Psyllid ID: psy875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Protein Sequence
MRFKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS
Secondary Structure (PSIPRED)
cccEEEEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccHHHHHHHHHccccEEEEEEHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHccccccEEEcccccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccHcccccccHHHHHHHcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MRFKIALSrgiglsdsldSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEigdlyelqekpfELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKldlnsssdeedtiledspnigddinleelsdlnsadeeskedqdkrtnrkraprshflikrndkdsnlnlyniesitisrnRLGAQEVRKLLSLLNADLLVHLNLsatletpttsllekprgetALHVAAARGNLTLVQSLLKqghpvkvqdsagwlplheaanhgHTDIVQALVsagadpndkvqdsagwlplheaanhgHTDIVQALVSAGAEVS
Flexible Loop (DISEMBL)
mrfkialsrgiglsdslDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALdlarqnkddkliRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALdlarqnkddkliRTVMRSMKklykkhdkftelEQIKTELKSLEEKldlnsssdeedtiledspnigddinleelsdlnsadeeskedqdkrtnrkraprshflikrndkdsnlnlYNIEsitisrnrlgAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS
Low Complexity Region (SEG)
MRFKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKllsllnadllvhlnlSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS
Disordered region (IsUnstruct)
******LSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLA****DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA*******LIRTVM*****LY****************************************************************************************NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE**RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG**********AGWLPLHEAANHGHTDIVQAL********
Disordered Region (DISOPRED)
MRFKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV*
Disordered Region (DISEMBL)
********RGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK***********TILEDSPNIGDDINLEELSDL********************PRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS
Disordered Region (DISPRO)
MRFKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRFKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKxxxxxxxxxxxxxxxxxxxxxxxxxxxxDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	480	2.2.26 [Sep-21-2011]
Q9VSA4	1405	Tonsoku-like protein OS=D	yes	N/A	0.795	0.271	0.265	1e-32
A9JR78	1427	Tonsoku-like protein OS=D	yes	N/A	0.202	0.067	0.469	3e-19
Q6UB98	2062	Ankyrin repeat domain-con	yes	N/A	0.220	0.051	0.434	3e-18
D4A615	1367	Tonsoku-like protein OS=R	no	N/A	0.195	0.068	0.474	3e-18
Q6NZL6	1363	Tonsoku-like protein OS=M	yes	N/A	0.195	0.068	0.474	3e-18
Q0P5G1	1374	Tonsoku-like protein OS=B	no	N/A	0.195	0.068	0.474	1e-17
Q96HA7	1378	Tonsoku-like protein OS=H	no	N/A	0.195	0.068	0.464	5e-17
Q8N7Z5	1873	Putative ankyrin repeat d	no	N/A	0.191	0.049	0.457	1e-16
Q99728	777	BRCA1-associated RING dom	no	N/A	0.197	0.122	0.431	2e-16
Q9QZH2	768	BRCA1-associated RING dom	no	N/A	0.185	0.115	0.453	5e-16

>sp|Q9VSA4|TONSL_DROME Tonsoku-like protein OS=Drosophila melanogaster GN=CG7457 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 212/493 (43%), Gaps = 111/493 (22%)

Query: 39  CYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTL--------------GEIGD 83
           CYIS++  Y   K     A+ + N  L + A+ FP  VK +              G+   
Sbjct: 205 CYISMSLLYICKKNDATAALRFCNMALEV-AKRFPNKVKKICETLITKAEILIKAGDFAS 263

Query: 84  LYELQEKSFEIVQSTHEKALDLARQNKD--------DKLIRTVMRSIKKLYKKHDNLDSA 135
             ++  K+++         +++ +Q +         D+L+ T      KL   ++ L   
Sbjct: 264 AKQILTKAYKKNTPDENDRVNIEKQLRIVVKVCQTLDELVLTSSVDYAKLKGLYEKLGDG 323

Query: 136 CSELHTV---------------LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180
           C  L                  L+ +  K L   Y+SL QTY+DN Q++ A++Y  KE  
Sbjct: 324 CCHLMNYEKALTYYQKMLENAELNQESGKSLVPIYVSLYQTYRDNGQFDKALEYLWKEFE 383

Query: 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ--NKDDKLIRTVMRSMK 238
           L+     EA  TL  I ++ E Q  PF  V   ++KAL  A +  +  DKL++  M  ++
Sbjct: 384 LNQDAPSEAFTTLCTIAEICEQQSHPFWTVHDVYQKALRQADKAGSCSDKLVKIAMVRLR 443

Query: 239 KLYKKHDKFTELEQIKTELKSLEEKLDLNSS--SDEEDT------ILEDSPNIGDDINLE 290
           +L  KH+    +E ++ +  +    LD   S   DEE++      + +++P+  DD +L 
Sbjct: 444 RLMLKHNMQVLVENLEADATAKGIDLDQEESVGDDEEESDGGGTAVQQNTPDWDDDFDLA 503

Query: 291 ELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQE 350
            L+D +++D +  E           PR     + N            ++ I +N      
Sbjct: 504 TLTDSDASDLDETE----------KPRPQRTTRGN-----------RTLVIKKNN----- 537

Query: 351 VRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410
                                            +GET LH A   GNL LV+ L+ QGH 
Sbjct: 538 ---------------------------------KGETQLHQACISGNLELVRRLIDQGHT 564

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP--NDKVQDSA-GWLPLHEAANHGHTD 467
           V V+D AGWLPLHEA NHG+ +IV+ L+  GA    NDK   S  G  PL +A ++G  D
Sbjct: 565 VNVRDHAGWLPLHEACNHGYREIVELLLDKGAASAINDKGGTSCDGITPLFDACSNGFLD 624

Query: 468 IVQALVSAGAEVS 480
           + + L+  GA+ +
Sbjct: 625 VAELLLDRGADAT 637

Drosophila melanogaster (taxid: 7227)

>sp|A9JR78|TONSL_DANRE Tonsoku-like protein OS=Danio rerio GN=tonsl PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           +GET LH A   GNL  VQ L++QGHPV V+D  GW PLHE+ N+GH +IV  L+  GA+
Sbjct: 522 KGETVLHRACIEGNLKQVQYLIEQGHPVNVRDYCGWTPLHESCNYGHQEIVAFLLDRGAN 581

Query: 444 PNDK-VQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            ND   ++  G  PLH+  + GH  + + LV  GA V+
Sbjct: 582 VNDPGGRECGGITPLHDTLSCGHFSVARLLVLRGASVT 619

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks.

Danio rerio (taxid: 7955)

>sp|Q6UB98|ANR12_HUMAN Ankyrin repeat domain-containing protein 12 OS=Homo sapiens GN=ANKRD12 PE=1 SV=3

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 9/115 (7%)

Query: 370 ATLETPTTSLLEK-------PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPL 422
           A  +TP++S  +K        RGET LH+AA RG++  V+ L+  G  V V+D AGW PL
Sbjct: 163 AQKKTPSSSSRQKDKVNKRNERGETPLHMAAIRGDVKQVKELISLGANVNVKDFAGWTPL 222

Query: 423 HEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           HEA N G+ D+ + L++AGAD N +  D     PLH++A+ GH DIV+ L+  G 
Sbjct: 223 HEACNVGYYDVAKILIAAGADVNTQGLDDD--TPLHDSASSGHRDIVKLLLRHGG 275

May recruit HDACs to the p160 coactivators/nuclear receptor complex to inhibit ligand-dependent transactivation.

Homo sapiens (taxid: 9606)

>sp|D4A615|TONSL_RAT Tonsoku-like protein OS=Rattus norvegicus GN=Tonsl PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-- 442
           GET LH A   G L  VQ L+KQGHP+  +D  GW PLHEA N+GH +IV+ L+  GA  
Sbjct: 529 GETLLHRACIEGQLRRVQDLVKQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAV 588

Query: 443 -DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            DP  +  D  G  PLH+A N GH ++ + L+  GA V+
Sbjct: 589 DDPGGQGCD--GITPLHDALNCGHFEVAELLIERGASVT 625

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Rattus norvegicus (taxid: 10116)

>sp|Q6NZL6|TONSL_MOUSE Tonsoku-like protein OS=Mus musculus GN=Tonsl PE=2 SV=2

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-- 442
           GET LH A   G L  VQ L+KQGHP+  +D  GW PLHEA N+GH +IV+ L+  GA  
Sbjct: 529 GETLLHRACIEGQLRRVQDLVKQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAV 588

Query: 443 -DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            DP  +  D  G  PLH+A N GH ++ + L+  GA V+
Sbjct: 589 DDPGGQGCD--GITPLHDALNCGHFEVAELLIERGASVT 625

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Mus musculus (taxid: 10090)

>sp|Q0P5G1|TONSL_BOVIN Tonsoku-like protein OS=Bos taurus GN=TONSL PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-- 442
           GET LH A   G L  VQ L++QGHP+  +D  GW PLHEA N+GH DIV+ L+  GA  
Sbjct: 527 GETLLHRACIEGQLGRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLDIVRFLLDHGAAV 586

Query: 443 -DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            DP  +  D  G  PLH+A N GH ++ + L+  GA V+
Sbjct: 587 DDPGGQGCD--GITPLHDALNCGHFEVAELLIERGASVT 623

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Bos taurus (taxid: 9913)

>sp|Q96HA7|TONSL_HUMAN Tonsoku-like protein OS=Homo sapiens GN=TONSL PE=1 SV=2

 Score = 89.7 bits (221), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 60/99 (60%), Gaps = 5/99 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-- 442
           GET LH A   G L  VQ L++QGHP+  +D  GW PLHEA N+GH +IV+ L+  GA  
Sbjct: 529 GETLLHRACIEGQLRRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAV 588

Query: 443 -DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            DP    Q   G  PLH+A N GH ++ + L+  GA V+
Sbjct: 589 DDPGG--QGCEGITPLHDALNCGHFEVAELLLERGASVT 625

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Homo sapiens (taxid: 9606)

>sp|Q8N7Z5|ANR31_HUMAN Putative ankyrin repeat domain-containing protein 31 OS=Homo sapiens GN=ANKRD31 PE=5 SV=2

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 384  RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            RGE+ LH+A  RGNL LV++L++ G  V + D+AGW PLHEA+N G  DI+  L+ AGA 
Sbjct: 1154 RGESQLHLAVRRGNLPLVKALIESGADVNLNDNAGWTPLHEASNEGSIDIIVELLKAGAK 1213

Query: 444  PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             N   ++  G LPLH+A  + H    + L+  GA
Sbjct: 1214 VN--CENIDGILPLHDAVANNHLKAAEILLQNGA 1245

Homo sapiens (taxid: 9606)

>sp|Q99728|BARD1_HUMAN BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 14/109 (12%)

Query: 375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIV 434
           P  ++    RGET LH+A+ +G++  V+ LL+ G    V+D AGW PLHEA NHGH  +V
Sbjct: 418 PNMAVKRNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 477

Query: 435 Q------ALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           +      ALV+     ND         PLH+AA +GH DIV+ L+S GA
Sbjct: 478 ELLLQHKALVNTTGYQNDS--------PLHDAAKNGHVDIVKLLLSYGA 518

Probable E3 ubiquitin-protein ligase. The BRCA1-BARD1 heterodimer specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Plays a central role in the control of the cell cycle in response to DNA damage. Acts by mediating ubiquitin E3 ligase activity that is required for its tumor suppressor function. Also forms a heterodimer with CSTF1/CSTF-50 to modulate mRNA processing and RNAP II stability by inhibiting pre-mRNA 3' cleavage.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9QZH2|BARD1_RAT BRCA1-associated RING domain protein 1 OS=Rattus norvegicus GN=Bard1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 8/97 (8%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           RGET LH+A+ +G+++ V+ LL+ G+   V+D AGW PLHEA +HGH  IV+ L+   A 
Sbjct: 417 RGETLLHIASIKGDISSVEYLLQNGNDPNVKDHAGWTPLHEACSHGHLKIVELLLQHNA- 475

Query: 444 PNDKVQDSAGW---LPLHEAANHGHTDIVQALVSAGA 477
               + ++ G+    PLH+AA +GH DIV+ L+S GA
Sbjct: 476 ----LVNTTGYHNDSPLHDAAKNGHIDIVKVLLSHGA 508

Probable E3 ubiquitin-protein ligase. The BRCA1-BARD1 heterodimer specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Plays a central role in the control of the cell cycle in response to DNA damage. Acts by mediating ubiquitin E3 ligase activity that is required for its tumor suppressor function. Also forms a heterodimer with CSTF1/CSTF-50 to modulate mRNA processing and RNAP II stability by inhibiting pre-mRNA 3' cleavage.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
195126439	1417	GI13076 [Drosophila mojavensis] gi|19391	0.795	0.269	0.280	1e-32
21392114	1405	RE28066p [Drosophila melanogaster]	0.795	0.271	0.267	2e-31
195378839	1406	GJ13826 [Drosophila virilis] gi|19415534	0.795	0.271	0.280	6e-31
24660357	1405	CG7457 [Drosophila melanogaster] gi|7502	0.795	0.271	0.265	7e-31
405966304	1411	NF-kappa-B inhibitor-like protein 2 [Cra	0.577	0.196	0.310	2e-30
194865399	1405	GG14941 [Drosophila erecta] gi|190653193	0.568	0.194	0.295	2e-29
242017152	1198	tpr and ank domain-containing protein, p	0.547	0.219	0.301	3e-29
194751231	1393	GF23769 [Drosophila ananassae] gi|190625	0.562	0.193	0.301	5e-29
195019868	1402	GH16854 [Drosophila grimshawi] gi|193898	0.575	0.196	0.298	7e-29
312383108	1256	hypothetical protein AND_03945 [Anophele	0.608	0.232	0.306	2e-28

>gi|195126439|ref|XP_002007678.1| GI13076 [Drosophila mojavensis] gi|193919287|gb|EDW18154.1| GI13076 [Drosophila mojavensis]

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 220/495 (44%), Gaps = 113/495 (22%)

Query: 39  CYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTL--------------GEIGD 83
           CYIS++  Y   K     A+ Y N    + A+  P  VK +              G+   
Sbjct: 205 CYISMSLLYNCKKNDAASALRYCNMAQEV-AKRLPNKVKKICETLITKSEILISAGDFAS 263

Query: 84  LYELQEKSF------EIVQSTHEKALDLARQ--NKDDKLIRTVMRSIKKLYKKHDNLDSA 135
           + ++  K++      E  ++T E++L +  +     D+L+ T   +  KL   ++ L   
Sbjct: 264 VKQILTKAYKKHSPDENDRATIERSLRVVVKICQTLDELVLTSSVNYAKLKDLYEKLGDG 323

Query: 136 CSEL---------------HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180
           C  L               +  L+ +  K L   Y+SL QTYKDNKQY+ A++Y  KE  
Sbjct: 324 CCHLLNYEKAIDYYKKMLENAELNGERGKSLVPIYVSLYQTYKDNKQYDKALEYLWKEYE 383

Query: 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR---QNKDDKLIRTVMRSM 237
           L+     EA  TL  I ++ EL  +PF  +   ++KAL  A    ++   KL +  +  +
Sbjct: 384 LNQDVPGEAFTTLCSIAEICELLAQPFWTIHDVYQKALRQAAKADESSSAKLEKIALVRL 443

Query: 238 KKLYKKHDKFTELEQIKTELKS-----LEEKLDLNSSSDEED----TILEDSPNIGDDIN 288
            KL  KH      E ++ E K+      EE   L+   D E      + +++P+ GDD++
Sbjct: 444 HKLQLKHKMTVLAENLEAEAKAKGINLAEEAAKLDEDEDAESDVPAALQQNTPDWGDDVD 503

Query: 289 LEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGA 348
           L+ L+D +++D    ++ DK       PR   + + N            ++TI RN    
Sbjct: 504 LDALTDSDASD---LDETDK-------PRPQRITRGN-----------RTLTIKRNN--- 539

Query: 349 QEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQG 408
                                              +GET LH A   GNL L + L++QG
Sbjct: 540 -----------------------------------KGETQLHQACIAGNLELARRLIEQG 564

Query: 409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP--NDKVQDSA-GWLPLHEAANHGH 465
           H V V+D AGWLPLHEA NHG+ DIV+ L+  GA    NDK   S  G  PL++A  +G+
Sbjct: 565 HTVNVRDHAGWLPLHEACNHGYRDIVELLLDKGATVAINDKGGTSCDGITPLYDACANGY 624

Query: 466 TDIVQALVSAGAEVS 480
            D+ + L+  GA+ +
Sbjct: 625 LDVAELLLERGADAT 639

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21392114|gb|AAM48411.1| RE28066p [Drosophila melanogaster]

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 212/493 (43%), Gaps = 111/493 (22%)

Query: 39  CYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTL--------------GEIGD 83
           CYIS++  Y   K     A+ + N  L + A+ FP  VK +              G+   
Sbjct: 205 CYISMSLLYICKKNDATAALRFCNMALEV-AKRFPNKVKKICETLITKAEILIKAGDFAS 263

Query: 84  LYELQEKSFEIVQSTHEKALDLARQNKD--------DKLIRTVMRSIKKLYKKHDNLDSA 135
             ++  K+++         +++ +Q +         D+L+ T      KL   ++ L   
Sbjct: 264 AKQILTKAYKKNTPDENDRVNIEKQLRIVVKVCQTLDELVLTSSVDYAKLKGLYEKLGDG 323

Query: 136 CSELHTV---------------LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180
           C  L                  L+ +  K L   Y+SL QTY+DN Q++ A++Y  KE  
Sbjct: 324 CCHLMNYEKALTYYQKMLENAELNQESGKSLVPIYVSLYQTYRDNGQFDKALEYLWKEFE 383

Query: 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ--NKDDKLIRTVMRSMK 238
           L+     EA  TL  I ++ E Q  PF  V   ++KAL  A +  +  DKL++  M  ++
Sbjct: 384 LNQDAPSEAFTTLCTIAEICEQQSHPFWTVHDVYQKALRQADKAGSCSDKLVKIAMVRLR 443

Query: 239 KLYKKHDKFTELEQIKTELKSLEEKLDLNSS--SDEEDT------ILEDSPNIGDDINLE 290
           +L  KH+    +E ++ +  +    LD   S   DEE++      + +++P+  DD +L 
Sbjct: 444 RLMLKHNMQVLVENLEADATAKGIDLDQEESVGDDEEESDGGGTAVQQNTPDWDDDFDLA 503

Query: 291 ELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQE 350
            L+D +++D +  E           PR     + N            ++ I RN      
Sbjct: 504 TLTDSDASDLDETE----------KPRPQRTTRGN-----------RTLVIKRNN----- 537

Query: 351 VRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410
                                            +GET LH A   GNL LV+ L+ QGH 
Sbjct: 538 ---------------------------------KGETQLHQACISGNLELVRRLIDQGHT 564

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP--NDKVQDSA-GWLPLHEAANHGHTD 467
           V V+D AGWLPLHEA NHG+ +IV+ L+  GA    NDK   S  G  PL +A ++G  D
Sbjct: 565 VNVRDHAGWLPLHEACNHGYREIVELLLDKGAASAINDKGGTSCDGITPLFDACSNGFLD 624

Query: 468 IVQALVSAGAEVS 480
           + + L+  GA+ +
Sbjct: 625 VAELLLDRGADAT 637

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195378839|ref|XP_002048189.1| GJ13826 [Drosophila virilis] gi|194155347|gb|EDW70531.1| GJ13826 [Drosophila virilis]

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 218/495 (44%), Gaps = 113/495 (22%)

Query: 39  CYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTL--------------GEIGD 83
           CYIS++  Y   K     A+ Y N  L++ A+  P  VK +              G+   
Sbjct: 205 CYISMSLLYNCKKNDAASALRYCNMALQV-AKRLPNKVKKICETLITKSEILIHAGDFAS 263

Query: 84  LYELQEKSF------EIVQSTHEKALDLARQNKD--DKLIRTVMRSIKKLYKKHDNLDSA 135
           + ++  K++      E  ++T E++L +  +     D+L+ T      KL   ++ L   
Sbjct: 264 VKQILTKAYKKHTPDENDRATIERSLRVVVKICQCLDELVLTSSVDYGKLKDLYEKLGDG 323

Query: 136 CSELHTV---------------LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180
           C  L                  L+ +  K L   Y+SL QTYKDNKQY+ A++Y  KE  
Sbjct: 324 CCHLLNYEKAIVYYQKMLECAELNEERGKSLVPIYVSLYQTYKDNKQYDKALEYLWKEFE 383

Query: 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD---KLIRTVMRSM 237
           L+     EA  TL  I ++ E Q +PF  V   ++KAL  A +  +    KL +  +  +
Sbjct: 384 LNQDVPAEAFTTLCSIAEICEQQAQPFWTVHDVYQKALRQAAKADESLSAKLEKIALVRL 443

Query: 238 KKLYKKHDKFTELEQIKTELKSLEEKLDLNSSS-DEED--------TILEDSPNIGDDIN 288
            KL  KH      E ++ E  +    L   ++  DEED         + +++P+  DD++
Sbjct: 444 HKLQVKHKMHVLAENLEAEANAKGINLAAETAKLDEEDDADGDVPAALQQNTPDWVDDVD 503

Query: 289 LEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGA 348
           L+ L+D +++D    ++ DK       PR   + + N            ++TI RN  G 
Sbjct: 504 LDALTDSDASD---LDETDK-------PRPQRVTRGN-----------RTLTIKRNNKG- 541

Query: 349 QEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQG 408
                                                ET LH A   GNL L + L++QG
Sbjct: 542 -------------------------------------ETQLHQACIAGNLELARRLIEQG 564

Query: 409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP--NDKVQDSA-GWLPLHEAANHGH 465
           H V V+D AGWLPLHEA NHG+ DIV+ L+  GA    NDK   S  G  PL++A  +G+
Sbjct: 565 HTVNVRDHAGWLPLHEACNHGYRDIVELLLDKGATVAINDKGGTSCDGITPLYDACANGY 624

Query: 466 TDIVQALVSAGAEVS 480
            D+ + L+  GA+ +
Sbjct: 625 LDVAELLLERGADAT 639

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24660357|ref|NP_648150.1| CG7457 [Drosophila melanogaster] gi|75027426|sp|Q9VSA4.1|TONSL_DROME RecName: Full=Tonsoku-like protein gi|7295200|gb|AAF50523.1| CG7457 [Drosophila melanogaster]

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 212/493 (43%), Gaps = 111/493 (22%)

Query: 39  CYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTL--------------GEIGD 83
           CYIS++  Y   K     A+ + N  L + A+ FP  VK +              G+   
Sbjct: 205 CYISMSLLYICKKNDATAALRFCNMALEV-AKRFPNKVKKICETLITKAEILIKAGDFAS 263

Query: 84  LYELQEKSFEIVQSTHEKALDLARQNKD--------DKLIRTVMRSIKKLYKKHDNLDSA 135
             ++  K+++         +++ +Q +         D+L+ T      KL   ++ L   
Sbjct: 264 AKQILTKAYKKNTPDENDRVNIEKQLRIVVKVCQTLDELVLTSSVDYAKLKGLYEKLGDG 323

Query: 136 CSELHTV---------------LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR 180
           C  L                  L+ +  K L   Y+SL QTY+DN Q++ A++Y  KE  
Sbjct: 324 CCHLMNYEKALTYYQKMLENAELNQESGKSLVPIYVSLYQTYRDNGQFDKALEYLWKEFE 383

Query: 181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ--NKDDKLIRTVMRSMK 238
           L+     EA  TL  I ++ E Q  PF  V   ++KAL  A +  +  DKL++  M  ++
Sbjct: 384 LNQDAPSEAFTTLCTIAEICEQQSHPFWTVHDVYQKALRQADKAGSCSDKLVKIAMVRLR 443

Query: 239 KLYKKHDKFTELEQIKTELKSLEEKLDLNSS--SDEEDT------ILEDSPNIGDDINLE 290
           +L  KH+    +E ++ +  +    LD   S   DEE++      + +++P+  DD +L 
Sbjct: 444 RLMLKHNMQVLVENLEADATAKGIDLDQEESVGDDEEESDGGGTAVQQNTPDWDDDFDLA 503

Query: 291 ELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQE 350
            L+D +++D +  E           PR     + N            ++ I +N      
Sbjct: 504 TLTDSDASDLDETE----------KPRPQRTTRGN-----------RTLVIKKNN----- 537

Query: 351 VRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP 410
                                            +GET LH A   GNL LV+ L+ QGH 
Sbjct: 538 ---------------------------------KGETQLHQACISGNLELVRRLIDQGHT 564

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP--NDKVQDSA-GWLPLHEAANHGHTD 467
           V V+D AGWLPLHEA NHG+ +IV+ L+  GA    NDK   S  G  PL +A ++G  D
Sbjct: 565 VNVRDHAGWLPLHEACNHGYREIVELLLDKGAASAINDKGGTSCDGITPLFDACSNGFLD 624

Query: 468 IVQALVSAGAEVS 480
           + + L+  GA+ +
Sbjct: 625 VAELLLDRGADAT 637

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405966304|gb|EKC31604.1| NF-kappa-B inhibitor-like protein 2 [Crassostrea gigas]

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 165/332 (49%), Gaps = 55/332 (16%)

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
           KD    Y+SLAQTY D+KQY  A+ Y+NKE+     +  +  KTL  I ++     + ++
Sbjct: 322 KDFIPIYVSLAQTYADDKQYKNAILYYNKEIEARGDDATQVCKTLLNIAEIEYSDGQDYD 381

Query: 209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNS 268
            +  T+ KA  LA++ +   L   V++++ ++ +  +K   L+Q   ++K ++EK D++S
Sbjct: 382 KISDTYLKAYKLAKKAQHHLLEFHVLKALTEVQRSFNKKGHLKQTSEQMKLVKEKYDIDS 441

Query: 269 SSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRNDKD 328
           S                    +ELSD            D+R ++K  P         D D
Sbjct: 442 S--------------------DELSD------------DERDSQKLYPE--------DDD 461

Query: 329 SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETA 388
           + L++  +    ++ + +            +AD+       A     +T   EK  GET 
Sbjct: 462 TQLSISELSESDVTDDEV------------SADVATSATGRARRVKASTKRNEK--GETP 507

Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDK- 447
           LH A   GNL  VQ L++QGHPV  +D  GW+PLHEAANH   +IVQ L+  GA  ND+ 
Sbjct: 508 LHRACIEGNLKKVQKLIEQGHPVNPRDHCGWIPLHEAANHDFLEIVQYLLEHGAAVNDRG 567

Query: 448 VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            Q   G  PL +AA+ G+ ++++ L+S GA V
Sbjct: 568 GQHCGGVTPLIDAASCGNMEVMELLISKGANV 599

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|194865399|ref|XP_001971410.1| GG14941 [Drosophila erecta] gi|190653193|gb|EDV50436.1| GG14941 [Drosophila erecta]

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 157/345 (45%), Gaps = 72/345 (20%)

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
           K L   Y+SL QTY+DN Q++ A++Y  KE  L+     EA  TL  I ++ E Q  PF 
Sbjct: 352 KSLVPIYVSLYQTYRDNGQFDKALEYLWKEFELNQDTPSEAFTTLCTIAEICEQQAHPFW 411

Query: 209 LVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266
            V   ++KAL  A +  +  DKL++  M  +++L  KH+    +E ++ +  +    LD 
Sbjct: 412 TVHDVYQKALRQADKAGSSTDKLVKIAMVRLRRLMLKHNMQVLVENLEADATAKGIDLDQ 471

Query: 267 NSS--------SDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRS 318
             S              + +++P+  DD +L  L+D +++D +  E           PR 
Sbjct: 472 EESVGDDDEDSDGGGTAVQQNTPDWDDDFDLATLTDSDASDLDETEK----------PRP 521

Query: 319 HFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS 378
               + N            ++ I +N                                  
Sbjct: 522 QRTTRGN-----------RTLVIKKNN--------------------------------- 537

Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
                +GET LH A   GNL LV+ L+ QGH V V+D AGWLPLHEA NHG+ +IV+ L+
Sbjct: 538 -----KGETQLHQACISGNLELVRRLIDQGHTVNVRDHAGWLPLHEACNHGYREIVELLL 592

Query: 439 SAGADP--NDKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAEVS 480
             GA    NDK   S  G  PL +A ++G  D+ + L+  GA+ +
Sbjct: 593 DKGAASAINDKGGTSCDGITPLFDACSNGFLDVAELLLDRGADAT 637

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017152|ref|XP_002429056.1| tpr and ank domain-containing protein, putative [Pediculus humanus corporis] gi|212513911|gb|EEB16318.1| tpr and ank domain-containing protein, putative [Pediculus humanus corporis]

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 161/342 (47%), Gaps = 79/342 (23%)

Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE-AVKTLGEIGDLYELQEKPFE 208
           ++  C   + +T+ + K+Y+ A+ Y ++EL+L+ +N PE A  T  + G L+EL+   ++
Sbjct: 349 NIIICIKLVIKTFAEGKEYSKALFYAHQELQLYLKNSPEKACYTYLKTGKLHELKGSDYD 408

Query: 209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLN- 267
            +   + +A D A + ++DK+    ++ +  + KK DK   +EQ   ELK L+ K + N 
Sbjct: 409 DISYAYFQAKDTAEKYENDKIKIKSLKRIINIGKKFDKPMVVEQATNELKCLKAKKEKNI 468

Query: 268 -----------SSSDEEDTILEDSPNIGDDINLEELSDLNSADEESKEDQDKRTNRKRAP 316
                       S D +  + ED   IG D    E  D+    E  +E+ D+   R+R  
Sbjct: 469 SSSESESDDNFYSFDSDICVDED---IGTD---SEFEDVLKESETEQEEFDRP--RERCK 520

Query: 317 RSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPT 376
           R+ +                   +I RN                                
Sbjct: 521 RTKY-------------------SIKRNE------------------------------- 530

Query: 377 TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
                  +GET LHVA  +GNL  VQ+L+ QGHPV  +D AGW PLHEA NHG+ DIV+ 
Sbjct: 531 -------KGETELHVATIKGNLKKVQNLISQGHPVNTRDGAGWTPLHEACNHGYLDIVKI 583

Query: 437 LVSAGADPNDKVQDSAGWL-PLHEAANHGHTDIVQALVSAGA 477
           LV  GAD NDK   +   + PLH+AA +G   +++ L+  GA
Sbjct: 584 LVENGADVNDKGGSACDLITPLHDAAINGQHKVIEYLIEKGA 625

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751231|ref|XP_001957930.1| GF23769 [Drosophila ananassae] gi|190625212|gb|EDV40736.1| GF23769 [Drosophila ananassae]

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 167/345 (48%), Gaps = 75/345 (21%)

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
           K L   Y+SL QTY+D+ QY+  ++Y  KE  ++     EA  TL  I ++ + Q +PF 
Sbjct: 352 KSLVPIYVSLYQTYRDSGQYDKTLEYLWKEYEVNQDVPSEAFTTLCTIAEVCDQQAQPFW 411

Query: 209 LVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266
            V   ++KAL  A +  +   KL +  +  +KKL +KH+    +E +  E K+  + +DL
Sbjct: 412 TVHDIYQKALRQAEKAGSSSSKLEKIALVRLKKLEQKHNMHVLVENLVAEAKA--KGIDL 469

Query: 267 NSSSDEED-------TILEDSPNIGDDINLEELSDLNSAD-EESKEDQDKRTNRKRAPRS 318
           N  +D++D        + +++P+  DD +L  L+D +++D +E+++ + +RT R      
Sbjct: 470 NDETDQDDDDDEGEEAVQQNTPDWDDDFDLNTLTDSDASDSDETEKHRPERTTR------ 523

Query: 319 HFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS 378
                            + S TI +N                                  
Sbjct: 524 ----------------GVRSFTIKKNN--------------------------------- 534

Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
                +GET LH A   GNL L + L+ QGH V V+D AGWLPLHEA NHG+ +IV+ L+
Sbjct: 535 -----KGETQLHQACISGNLELARRLIDQGHTVNVRDHAGWLPLHEACNHGYREIVELLL 589

Query: 439 SAGADP--NDKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAEVS 480
             GA    NDK   S  G  PL +A ++G  D+ + L+  GA+ +
Sbjct: 590 DKGAASAINDKGGTSCDGITPLFDACSNGFLDVAELLLDRGADAT 634

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195019868|ref|XP_001985072.1| GH16854 [Drosophila grimshawi] gi|193898554|gb|EDV97420.1| GH16854 [Drosophila grimshawi]

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 169/362 (46%), Gaps = 86/362 (23%)

Query: 136 CSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195
           C+EL+     +  K L   Y+SL QTYKDN QY+ A++Y   E  ++     EA  TL  
Sbjct: 343 CAELN----GERGKSLVPIYVSLYQTYKDNHQYDKALEYLWLEFEVNQDMPAEAFTTLCS 398

Query: 196 IGDLYELQEKPFELVVSTHEKALDLARQNKDD---KLIRTVMRSMKKLYKKHDKFTELEQ 252
           I ++ ELQ +PF  V   ++KAL  A +  ++   KL +  +  + KL  KH      E 
Sbjct: 399 IAEICELQAQPFWTVHDVYQKALRQATKADEESAAKLEKIALVRLHKLQLKHKMHVLAEN 458

Query: 253 IKTELKSLEEKLDLNSSSDEEDT-------------ILEDSPNIGDDINLEELSDLNSAD 299
           ++ E  +  + ++L + + +++              + +++P+  DD++L+ L+D +++D
Sbjct: 459 LEAEASA--KGINLVAEAAKQEEEDEDADSESAAAALQQNTPDWADDVDLDALTDSDASD 516

Query: 300 -EESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLL 358
            +ES++ + +RT R                         S+TI RN              
Sbjct: 517 LDESEKPRPQRTTRGN----------------------RSLTIKRNN------------- 541

Query: 359 NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG 418
                                    +GET LH A   GNL L + L+ QGH V V+D AG
Sbjct: 542 -------------------------KGETQLHQACIAGNLELARRLIDQGHTVNVRDHAG 576

Query: 419 WLPLHEAANHGHTDIVQALVSAGADP--NDKVQDSA-GWLPLHEAANHGHTDIVQALVSA 475
           WLPLHEA NHG+ DIV+ L+  GA    NDK   S  G  PL +A  +G  D+ + L+  
Sbjct: 577 WLPLHEACNHGYRDIVELLLDKGATVAINDKGGTSCDGITPLFDACANGFLDVAELLLER 636

Query: 476 GA 477
           GA
Sbjct: 637 GA 638

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383108|gb|EFR28318.1| hypothetical protein AND_03945 [Anopheles darlingi]

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 167/362 (46%), Gaps = 70/362 (19%)

Query: 144 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203
           + ++ + L  CY+SL QTY DN+QY  A+D+  KE  + +    EA  TL +I  LYE Q
Sbjct: 353 AGEVNRQLIPCYVSLYQTYTDNRQYEEALDFLWKEYAIISDEPKEAYHTLLQIAKLYERQ 412

Query: 204 E-KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE 262
           + + F      + KA   AR+    +L +  ++   KL + +      E ++ E  ++  
Sbjct: 413 KSRSFFETSDIYRKAQLEARKLGSTELEKVPIQLAVKLLRANCMDMMAEDLERE--AVAA 470

Query: 263 KLDLNSSS--------DEEDTIL---------------EDSPNIGDDINLEELSDLNSAD 299
            +DL +          D E  +L                D+PNIGDD+ L    D++ +D
Sbjct: 471 GIDLGTGPEPDSEEPPDSEGDLLAGPVGIIDEELQENDHDTPNIGDDVQL----DVDLSD 526

Query: 300 EESKEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLN 359
           +    D D ++  K +      +  ND DS +      S T  R                
Sbjct: 527 DA---DSDGQSGNKSS------VTSNDHDSTVAGTTPGSRTRKRG--------------- 562

Query: 360 ADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW 419
                           T ++    +GET LH AA  GN  L + L+ QGHPV V+D AGW
Sbjct: 563 ---------------TTFAVRRNNKGETQLHQAAISGNKALAERLIIQGHPVNVRDHAGW 607

Query: 420 LPLHEAANHGHTDIVQALVSAGADPNDKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAE 478
           LPLHEA  HGHT+IV+ L+  GA  NDK   S  G  PL++A ++G  D+V+ L+  GA 
Sbjct: 608 LPLHEACIHGHTEIVELLLDRGAHLNDKGGTSCDGITPLYDACSNGRLDVVELLLERGAN 667

Query: 479 VS 480
            +
Sbjct: 668 AT 669

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
FB|FBgn0035812	1405	CG7457 [Drosophila melanogaste	0.216	0.074	0.462	2.2e-33
ZFIN|ZDB-GENE-041111-230	1427	zgc:171416 "zgc:171416" [Danio	0.202	0.067	0.479	3.9e-29
UNIPROTKB|I3LJX9	1384	TONSL "Uncharacterized protein	0.2	0.069	0.463	3.6e-25
UNIPROTKB|E2RN92	1324	TONSL "Uncharacterized protein	0.2	0.072	0.453	1.1e-24
RGD|1307483	1367	Tonsl "tonsoku-like, DNA repai	0.2	0.070	0.474	1.7e-24
UNIPROTKB|Q96HA7	1378	TONSL "Tonsoku-like protein" [	0.2	0.069	0.463	1.9e-24
MGI|MGI:1919999	1363	Tonsl "tonsoku-like, DNA repai	0.2	0.070	0.474	1.7e-23
UNIPROTKB|Q0P5G1	1374	TONSL "Tonsoku-like protein" [	0.2	0.069	0.474	3.1e-23
RGD|1310118	345	Ankrd12 "ankyrin repeat domain	0.520	0.724	0.294	8.3e-17
UNIPROTKB|F1P8X2	728	BARD1 "Uncharacterized protein	0.222	0.146	0.423	9.9e-17

FB|FBgn0035812 CG7457 [Drosophila melanogaster (taxid:7227)]

 Score = 232 (86.7 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 50/108 (46%), Positives = 69/108 (63%)

Query:   377 TSLLEKP-RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQ 435
             T +++K  +GET LH A   GNL LV+ L+ QGH V V+D AGWLPLHEA NHG+ +IV+
Sbjct:   530 TLVIKKNNKGETQLHQACISGNLELVRRLIDQGHTVNVRDHAGWLPLHEACNHGYREIVE 589

Query:   436 ALVSAGADP--NDKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAEVS 480
              L+  GA    NDK   S  G  PL +A ++G  D+ + L+  GA+ +
Sbjct:   590 LLLDKGAASAINDKGGTSCDGITPLFDACSNGFLDVAELLLDRGADAT 637

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-041111-230 zgc:171416 "zgc:171416" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 3.9e-29, Sum P(2) = 3.9e-29
 Identities = 47/98 (47%), Positives = 62/98 (63%)

Query:   384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
             +GET LH A   GNL  VQ L++QGHPV V+D  GW PLHE+ N+GH +IV  L+  GA+
Sbjct:   522 KGETVLHRACIEGNLRQVQYLIEQGHPVNVRDYCGWTPLHESCNYGHQEIVAFLLDRGAN 581

Query:   444 PNDKV-QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
              ND   ++  G  PLH+  N GH  + + LV  GA V+
Sbjct:   582 VNDPGGRECGGITPLHDTLNCGHFSVARLLVLRGASVT 619

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043596 "nuclear replication fork" evidence=ISS

GO:0035101 "FACT complex" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0031297 "replication fork processing" evidence=ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|I3LJX9 TONSL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 224 (83.9 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
 Identities = 45/97 (46%), Positives = 59/97 (60%)

Query:   385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             GET LH A   G L  VQ L++QGHP+  +D  GW PLHEA N+GH DIV+ L+  GA  
Sbjct:   532 GETLLHRACIEGRLGRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLDIVRFLLDHGAAV 591

Query:   445 NDKV-QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
             +D   Q   G  PLH+A   GH ++ + L+  GA V+
Sbjct:   592 DDPGGQGCEGITPLHDALTCGHFEVAELLIERGASVT 628

GO:0042555 "MCM complex" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035101 "FACT complex" evidence=IEA

GO:0031297 "replication fork processing" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|E2RN92 TONSL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 44/97 (45%), Positives = 59/97 (60%)

Query:   385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             GET LH A   G L  VQ L++QGHP+  +D  GW PLHEA N+GH DIV+ L+  GA  
Sbjct:   526 GETLLHRACIEGRLARVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLDIVRFLLDHGAVV 585

Query:   445 NDKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAEVS 480
             +D   +   G  PLH+A   GH ++ + L+  GA V+
Sbjct:   586 DDPGGEGCEGITPLHDALTCGHFEVAELLIGRGASVT 622

GO:0042555 "MCM complex" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035101 "FACT complex" evidence=IEA

GO:0031297 "replication fork processing" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

RGD|1307483 Tonsl "tonsoku-like, DNA repair protein" [Rattus norvegicus (taxid:10116)]

 Score = 229 (85.7 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
 Identities = 46/97 (47%), Positives = 60/97 (61%)

Query:   385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             GET LH A   G L  VQ L+KQGHP+  +D  GW PLHEA N+GH +IV+ L+  GA  
Sbjct:   529 GETLLHRACIEGQLRRVQDLVKQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAV 588

Query:   445 NDKV-QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
             +D   Q   G  PLH+A N GH ++ + L+  GA V+
Sbjct:   589 DDPGGQGCDGITPLHDALNCGHFEVAELLIERGASVT 625

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005662 "DNA replication factor A complex" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0031297 "replication fork processing" evidence=ISO;ISS

GO:0035101 "FACT complex" evidence=ISO;ISS

GO:0042393 "histone binding" evidence=ISO;ISS

GO:0042555 "MCM complex" evidence=ISO;ISS

GO:0043596 "nuclear replication fork" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q96HA7 TONSL "Tonsoku-like protein" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
 Identities = 45/97 (46%), Positives = 60/97 (61%)

Query:   385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             GET LH A   G L  VQ L++QGHP+  +D  GW PLHEA N+GH +IV+ L+  GA  
Sbjct:   529 GETLLHRACIEGQLRRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAV 588

Query:   445 NDKV-QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
             +D   Q   G  PLH+A N GH ++ + L+  GA V+
Sbjct:   589 DDPGGQGCEGITPLHDALNCGHFEVAELLLERGASVT 625

GO:0005737 "cytoplasm" evidence=IEA

GO:0031297 "replication fork processing" evidence=IMP

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042555 "MCM complex" evidence=IDA

GO:0043596 "nuclear replication fork" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0035101 "FACT complex" evidence=IDA

GO:0005662 "DNA replication factor A complex" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0042994 "cytoplasmic sequestering of transcription factor" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1919999 Tonsl "tonsoku-like, DNA repair protein" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
 Identities = 46/97 (47%), Positives = 60/97 (61%)

Query:   385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             GET LH A   G L  VQ L+KQGHP+  +D  GW PLHEA N+GH +IV+ L+  GA  
Sbjct:   529 GETLLHRACIEGQLRRVQDLVKQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAV 588

Query:   445 NDKV-QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
             +D   Q   G  PLH+A N GH ++ + L+  GA V+
Sbjct:   589 DDPGGQGCDGITPLHDALNCGHFEVAELLIERGASVT 625

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0031297 "replication fork processing" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043596 "nuclear replication fork" evidence=ISO

UNIPROTKB|Q0P5G1 TONSL "Tonsoku-like protein" [Bos taurus (taxid:9913)]

 Score = 229 (85.7 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
 Identities = 46/97 (47%), Positives = 60/97 (61%)

Query:   385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             GET LH A   G L  VQ L++QGHP+  +D  GW PLHEA N+GH DIV+ L+  GA  
Sbjct:   527 GETLLHRACIEGQLGRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLDIVRFLLDHGAAV 586

Query:   445 NDKV-QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
             +D   Q   G  PLH+A N GH ++ + L+  GA V+
Sbjct:   587 DDPGGQGCDGITPLHDALNCGHFEVAELLIERGASVT 623

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0031297 "replication fork processing" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0035101 "FACT complex" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0043596 "nuclear replication fork" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

RGD|1310118 Ankrd12 "ankyrin repeat domain 12" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 8.3e-17, P = 8.3e-17
 Identities = 82/278 (29%), Positives = 127/278 (45%)

Query:   216 KALDLARQNKDDKLI-RTVMRSMK-KL--YKKHDKFTELEQIKT--ELKSLEEKLDLN-- 267
             K +     + D  ++ R   R  K K+  Y K  K    +  K   E  S++ KL     
Sbjct:     8 KPVQSENSDSDSSMVERPYGRKSKDKIASYSKTSKIDRGDMGKEIREKSSMKRKLPFTLS 67

Query:   268 -SSSDEEDTILEDSP-NIGDDINLEELSDLNSADEESKEDQDKRTNRKRAPRSHFLIKRN 325
              S ++E D+  +  P +  ++     +S   +  E  KE  +K+  RK A       K++
Sbjct:    68 PSRNEERDSDTDSDPGHTSENWGERLISSYRTYSE--KEGPEKKKTRKEAGT-----KKS 120

Query:   326 DKDSNLNLYNIESITISRNRLGAQEVRKXXXXXXXXXXXXXXXSATLETPTTSLLEKP-- 383
                S L  Y +      +  L  Q   +                A  +TP++S  +K   
Sbjct:   121 TPVSILFGYPLSER--KQMALLMQMTARDNSPDSTPSHPSQATPAQKKTPSSSSRQKDKI 178

Query:   384 -----RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
                  RGET LH+AA RG++  V+ L+  G  V V+D AGW PLHEA N G+ D+ + L+
Sbjct:   179 NKRNERGETPLHMAAIRGDVKQVKELISLGADVNVKDFAGWTPLHEACNVGYYDVAKILI 238

Query:   439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
             +AGAD N +  D     PLH++A+ GH DIV+ L+  G
Sbjct:   239 AAGADVNTQGLDDD--TPLHDSASSGHRDIVKLLLRHG 274

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1P8X2 BARD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
 Identities = 47/111 (42%), Positives = 69/111 (62%)

Query:   369 SATLETPT--TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAA 426
             SAT  +P   T++    RGET LH+A+ +G++  V+ LL+ G    V+D AGW PLHEA 
Sbjct:   361 SATKLSPNSLTAVKRNHRGETLLHIASIKGDVPSVEYLLQNGSDPNVKDHAGWTPLHEAC 420

Query:   427 NHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             NHGH  +V+ L+   A  N     +    PLH+AA +GH +IV+ L+++GA
Sbjct:   421 NHGHLKVVELLLQHQALVNTPGYQNDS--PLHDAARNGHLEIVKLLLASGA 469

GO:0085020 "protein K6-linked ubiquitination" evidence=IEA

GO:0070531 "BRCA1-A complex" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0046826 "negative regulation of protein export from nucleus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042325 "regulation of phosphorylation" evidence=IEA

GO:0031436 "BRCA1-BARD1 complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	480
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	7e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.003
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 96.3 bits (240), Expect = 7e-24
 Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA+ G+L +V+ LL+ G  V  +D+ G  PLH AA +GH +IV+ L+  GAD 
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N   +D  G  PLH AA +G+ D+V+ L+  GA+V+
Sbjct: 67  N--ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN 100

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
           LH+AA  GNL LV+ LL++G  V + D+     LH AA +G+ +IV+ L+  GAD N K 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAK- 57

Query: 449 QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            D  G   LH AA +G+ +IV+ L+  GA+++
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 88.6 bits (220), Expect = 3e-21
 Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 2/90 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            G T LH+AA  G+L +V+ LL++G  V  +D  G  PLH AA +G+ D+V+ L+  GAD
Sbjct: 39  DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD 98

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
            N   +D  G  PLH AA +GH ++V+ L+
Sbjct: 99  VN--ARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
           TALH+AA  GNL +V+ LL+ G  V  +D  G   LH AA +G+ +IV+ L+  GAD N 
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Query: 447 K 447
           K
Sbjct: 90  K 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
            +D  G  PLH AA++GH ++V+ L+  GAD N   +D+ G  PLH AA +GH +IV+ L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN--AKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 473 VSAGAEV 479
           +  GA+V
Sbjct: 60  LEKGADV 66

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
           G   LH+AA  G  ++V+ L+  G D N    D  G   LH AA +G+ ++++ L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR--TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
           TALH AA  G L LV+ LL++G  +   D  G   LH AA +G+ ++++ L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.0 bits (134), Expect = 7e-09
 Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 10/104 (9%)

Query: 385 GETALHVAAARGNLT-----LVQSLLKQG---HPVKVQDSAGWLPLHEAANHGHTDIVQA 436
           G+T LH+AA  GN       + + LL+ G       ++D  G  PLH AA +G  DIV+ 
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165

Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           L+ AGADPN +  +S G   L  AA +G  ++V+ L+  G  +S
Sbjct: 166 LLEAGADPNSR--NSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 54.6 bits (131), Expect = 6e-08
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
           +T LH A  +G+L  ++ L + G  V ++D  G  P+H A  H   DI++ L+  GA  N
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184

Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
             V+D+ G  PLH AA +G    ++ L+  G  + 
Sbjct: 185 --VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM 217

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDK 447
           G  PLH AA +GH ++V+ L+ AGAD N +
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 377 TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
            ++ ++ +G TALH A    +  L + LL  G  V + D     PLH A  H +  IV  
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219

Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANH-GHTDIVQALVSAGAEVS 480
           L+  GA  + +  D  G  PLH +  +    DI++ L+  G +V+
Sbjct: 220 LLENGASTDAR--DKCGNTPLHISVGYCKDYDILKLLLEHGVDVN 262

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA 425
            G T LH+AA  G L LVQ LLK G  + ++DS G   L  A
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V  LL  G P+ ++D  G+ PLH A  + + + V+ L+  GA+PN    +  G  PLH A
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV--NKYGDTPLHIA 232

Query: 461 ANHGHTDIVQALVSAGAEVS 480
             + + +I + L++ G  + 
Sbjct: 233 ILNNNKEIFKLLLNNGPSIK 252

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
           P   + L   A+ GN  L++ LLK      + DS G  PLH AA+ G+ D V  L+    
Sbjct: 523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC 582

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
           + +  ++D+ G   L  A +  H  I + L
Sbjct: 583 NVH--IRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 453 GWLPLHEAANHGHTDIVQALVSAGAEV 479
           G  PLH AA +GH ++V+ L+ AGA+V
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 404 LLKQGHP-VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           LL+ G   +   D  G  PLH AA +G  ++VQ L+  G D N  ++DS G   L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLN--LRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 29/125 (23%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL--VSAG 441
           +G T LH+AA++G    V  LLK    V ++D+ G   L  A +  H  I + L   ++ 
Sbjct: 557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASI 616

Query: 442 ADP---------------------------NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           +DP                           N   +D  G   L  A    H D+V+ L+ 
Sbjct: 617 SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676

Query: 475 AGAEV 479
            GA+V
Sbjct: 677 NGADV 681

Length = 823

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPND 446
           G  PLH AA +G+ ++V+ L+  GAD N 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKP 206
           DLA+   +LA   +    Y+ A++   K L L      + PE  + L  +  LY      
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD- 61

Query: 207 FELVVSTHEKALDLARQ 223
           ++  +   EKAL L   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 393 AARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSA 452
           AA G+    + LL  G     +D  G  PLH A  +GH  +V+ L+  GADP   + D  
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT--LLDKD 147

Query: 453 GWLPLHEAANHGHTDIVQALVS 474
           G  PL  A  +G  ++VQ L  
Sbjct: 148 GKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKS 91
           DLA+   +LA   +    Y+ A++   K L L      + PE  + L  +  LY      
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDY 62

Query: 92  FEIVQSTHEKALDLARQ 108
            E ++   EKAL L   
Sbjct: 63  DEALE-YLEKALALREA 78

Length = 78

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD 415
           G T LH+AA  G+L +V+ LL+ G  V  +D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPN 445
           G  PLH AA +G+ ++V+ L+  GAD N
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 40.2 bits (93), Expect = 0.001
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
           L    G T LH AA  G+  +V+ LL+ G     ++S G   L  AA +G  ++V+ L+ 
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Query: 440 AG 441
            G
Sbjct: 202 KG 203

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           GE+ LH AA  G+   ++ L+  G+ +  +   G+ PLH A  H  + I   L+   A  
Sbjct: 190 GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAI--ELLINNASI 247

Query: 445 NDKVQDSAGWLPLHEAANHG-HTDIVQALVSAGAEVS 480
           ND  QD  G  PLH A N     DI+  L+   A++S
Sbjct: 248 ND--QDIDGSTPLHHAINPPCDIDIIDILLYHKADIS 282

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
           + LH+A   G++  ++ L+     + ++D  G  PL  A   G   I + L+ +GA+ + 
Sbjct: 137 SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID- 195

Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
               +     L  A  +   DIV+  +  GA+
Sbjct: 196 YFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            G T LH+A     L +++ L+ +G    + ++  + PLH A   G    ++ L+   A 
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +  ++D  G  PL  A   G   I + L+ +GA +
Sbjct: 161 LD--IEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 385 GETALHVAAARGNL--TLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
           G T LH  A   +   +LV  LL  G  +  ++  G  PLH AA   +    + L++ GA
Sbjct: 222 GNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA 281

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQA 471
           D N     S G  PL     + +   V+A
Sbjct: 282 DIN--AVSSDGNTPLSLMVRNNNGRAVRA 308

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
           G T LH+A A G++ +V+ LL+ G    + D  G  PL  A  +G  ++VQ L  
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 384 RGETALHVAA--ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTD--IVQALVS 439
           R  + LH      +    +V+ L++ G      D  G  PLH  A        +V  L+ 
Sbjct: 186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI 245

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           AG   N   ++  G  PLH AA   +    + L++ GA+++
Sbjct: 246 AGISIN--ARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	480
KOG4412|consensus	226		99.96
KOG4412|consensus	226		99.93
KOG4626|consensus	966		99.93
KOG4626|consensus	966		99.93
PHA02791	284	ankyrin-like protein; Provisional	99.92
PHA02791	284	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.9
KOG1840|consensus	508		99.9
PHA02875	413	ankyrin repeat protein; Provisional	99.89
KOG0509|consensus	600		99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.89
KOG0508|consensus	615		99.89
KOG0509|consensus	600		99.88
PHA02874	434	ankyrin repeat protein; Provisional	99.88
PHA03100	480	ankyrin repeat protein; Provisional	99.88
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA03100	480	ankyrin repeat protein; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.87
KOG1840|consensus	508		99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.86
PHA02798	489	ankyrin-like protein; Provisional	99.86
KOG0508|consensus	615		99.85
PHA03095	471	ankyrin-like protein; Provisional	99.85
KOG1130|consensus	639		99.85
PHA02874	434	ankyrin repeat protein; Provisional	99.85
PHA02989	494	ankyrin repeat protein; Provisional	99.84
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
KOG0510|consensus	929		99.84
PHA02876	682	ankyrin repeat protein; Provisional	99.84
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.84
KOG1130|consensus	639		99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02946	446	ankyin-like protein; Provisional	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.83
PHA02859	209	ankyrin repeat protein; Provisional	99.83
PHA02946	446	ankyin-like protein; Provisional	99.83
PHA02917	661	ankyrin-like protein; Provisional	99.83
PHA02795	437	ankyrin-like protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
KOG4177|consensus	1143		99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0502|consensus	296		99.81
KOG0510|consensus	929		99.8
PHA02876	682	ankyrin repeat protein; Provisional	99.8
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
KOG1126|consensus	638		99.79
KOG0512|consensus	228		99.79
KOG1155|consensus	559		99.79
KOG0502|consensus	296		99.78
KOG0514|consensus	452		99.77
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.77
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
KOG1126|consensus	638		99.76
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.76
KOG0195|consensus	448		99.76
PHA02917	661	ankyrin-like protein; Provisional	99.76
PHA02730	672	ankyrin-like protein; Provisional	99.75
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
PHA02730	672	ankyrin-like protein; Provisional	99.73
KOG0505|consensus	527		99.73
KOG4177|consensus	1143		99.73
PHA02736	154	Viral ankyrin protein; Provisional	99.72
KOG0514|consensus	452		99.71
PHA02743	166	Viral ankyrin protein; Provisional	99.7
PHA02792	631	ankyrin-like protein; Provisional	99.7
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.69
KOG1155|consensus	559		99.69
KOG0512|consensus	228		99.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.69
PHA02741	169	hypothetical protein; Provisional	99.68
KOG0195|consensus	448		99.68
PHA02884	300	ankyrin repeat protein; Provisional	99.67
PHA02792	631	ankyrin-like protein; Provisional	99.66
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.66
PRK11189	296	lipoprotein NlpI; Provisional	99.66
KOG1173|consensus	611		99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
KOG4214|consensus	117		99.64
KOG0547|consensus	606		99.64
KOG3676|consensus	782		99.64
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.62
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.62
KOG1173|consensus	611		99.61
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.6
KOG4214|consensus	117		99.6
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.6
KOG1941|consensus	518		99.59
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.59
KOG0505|consensus	527		99.59
PRK12370	553	invasion protein regulator; Provisional	99.59
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.57
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.57
KOG0507|consensus	854		99.57
PRK12370	553	invasion protein regulator; Provisional	99.57
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.56
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.56
KOG1129|consensus	478		99.55
KOG0507|consensus	854		99.55
KOG1941|consensus	518		99.55
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.54
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.54
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.54
PRK11189	296	lipoprotein NlpI; Provisional	99.54
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.51
KOG1125|consensus	579		99.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.5
KOG0547|consensus	606		99.5
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.49
KOG2002|consensus	1018		99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
KOG2003|consensus	840		99.47
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.47
KOG1125|consensus	579		99.46
KOG0515|consensus	752		99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.45
KOG0515|consensus	752		99.45
KOG2002|consensus	1018		99.45
KOG0548|consensus	539		99.44
KOG3676|consensus	782		99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
KOG1129|consensus	478		99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.34
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.33
KOG1710|consensus	396		99.32
KOG0548|consensus	539		99.32
KOG2076|consensus	895		99.31
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.3
KOG1710|consensus	396		99.3
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.29
PRK04841	903	transcriptional regulator MalT; Provisional	99.29
KOG4369|consensus	2131		99.28
KOG2003|consensus	840		99.27
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.27
PRK04841	903	transcriptional regulator MalT; Provisional	99.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.23
KOG0624|consensus	504		99.23
KOG0550|consensus	486		99.23
KOG4369|consensus	2131		99.22
KOG0550|consensus	486		99.22
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.21
PRK15359	144	type III secretion system chaperone protein SscB;	99.21
PRK15359	144	type III secretion system chaperone protein SscB;	99.2
PLN02789	320	farnesyltranstransferase	99.2
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.18
KOG1174|consensus	564		99.16
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.15
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.13
PRK14574	822	hmsH outer membrane protein; Provisional	99.1
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.09
PLN02789	320	farnesyltranstransferase	99.09
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.08
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.08
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.08
KOG2076|consensus	895		99.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.04
KOG0553|consensus	304		99.03
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.01
KOG4162|consensus	799		99.0
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.0
PLN03218	1060	maturation of RBCL 1; Provisional	99.0
KOG0553|consensus	304		98.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.98
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.98
KOG0624|consensus	504		98.97
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.96
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.96
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.95
PLN03218	1060	maturation of RBCL 1; Provisional	98.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.95
PF13606	30	Ank_3: Ankyrin repeat	98.94
KOG1174|consensus	564		98.94
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.93
KOG1127|consensus	1238		98.93
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.92
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.91
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.91
KOG1127|consensus	1238		98.9
KOG3060|consensus	289		98.9
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.9
KOG1586|consensus	288		98.9
KOG1586|consensus	288		98.9
KOG0818|consensus	669		98.87
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.87
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.86
KOG1128|consensus	777		98.86
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
KOG1585|consensus	308		98.82
PF13606	30	Ank_3: Ankyrin repeat	98.81
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.8
KOG3060|consensus	289		98.78
KOG0818|consensus	669		98.78
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.76
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.76
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.75
KOG1156|consensus	700		98.75
PRK14574	822	hmsH outer membrane protein; Provisional	98.75
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.73
KOG2376|consensus	652		98.73
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.72
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.72
KOG1156|consensus	700		98.69
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.69
KOG0506|consensus	622		98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.68
KOG0543|consensus	397		98.68
PLN03077	857	Protein ECB2; Provisional	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
KOG0705|consensus	749		98.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.67
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.64
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.62
KOG1585|consensus	308		98.62
KOG0783|consensus	1267		98.62
KOG0522|consensus	560		98.61
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.6
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.59
KOG0495|consensus	913		98.56
KOG0705|consensus	749		98.55
KOG1128|consensus	777		98.55
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.54
KOG2300|consensus	629		98.54
PF12688	120	TPR_5: Tetratrico peptide repeat	98.53
KOG0495|consensus	913		98.52
KOG0543|consensus	397		98.51
KOG2300|consensus	629		98.5
KOG0782|consensus	1004		98.49
PF12688	120	TPR_5: Tetratrico peptide repeat	98.48
PLN03077	857	Protein ECB2; Provisional	98.48
PRK10803	263	tol-pal system protein YbgF; Provisional	98.47
PRK10803	263	tol-pal system protein YbgF; Provisional	98.46
KOG4162|consensus	799		98.46
KOG0506|consensus	622		98.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.45
KOG4340|consensus	459		98.43
KOG3617|consensus	1416		98.39
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.39
KOG0783|consensus	1267		98.38
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.36
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.35
KOG4555|consensus	175		98.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.33
KOG2047|consensus	835		98.28
KOG0521|consensus	785		98.27
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.27
KOG3785|consensus	557		98.25
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.25
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.22
KOG0782|consensus	1004		98.2
KOG4234|consensus	271		98.19
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.17
KOG2796|consensus	366		98.16
KOG3617|consensus	1416		98.15
KOG2376|consensus	652		98.15
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.15
KOG0522|consensus	560		98.14
PRK15331	165	chaperone protein SicA; Provisional	98.13
KOG0511|consensus	516		98.12
KOG4234|consensus	271		98.12
KOG4340|consensus	459		98.12
KOG2384|consensus	223		98.11
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.11
KOG0520|consensus	975		98.1
PRK15331	165	chaperone protein SicA; Provisional	98.1
KOG3609|consensus	822		98.1
KOG3616|consensus	1636		98.1
KOG3785|consensus	557		98.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.08
KOG4555|consensus	175		98.07
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.04
KOG1070|consensus	1710		98.04
KOG2047|consensus	835		98.02
PRK11906	458	transcriptional regulator; Provisional	98.02
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.02
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.99
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.99
KOG0511|consensus	516		97.97
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.97
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.95
KOG4648|consensus	536		97.91
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.91
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.9
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.89
KOG4648|consensus	536		97.89
KOG2384|consensus	223		97.88
KOG1070|consensus	1710		97.87
KOG1464|consensus	440		97.83
PF13371	73	TPR_9: Tetratricopeptide repeat	97.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.81
PF13512	142	TPR_18: Tetratricopeptide repeat	97.8
KOG1915|consensus	677		97.78
PF13371	73	TPR_9: Tetratricopeptide repeat	97.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.77
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.75
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.74
PRK11906	458	transcriptional regulator; Provisional	97.72
KOG4642|consensus	284		97.72
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.71
KOG0520|consensus	975		97.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.71
KOG1464|consensus	440		97.71
PF13512	142	TPR_18: Tetratricopeptide repeat	97.69
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.63
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.63
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.59
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.57
KOG0521|consensus	785		97.54
KOG0551|consensus	390		97.52
KOG1839|consensus	1236		97.51
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.5
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.5
KOG1915|consensus	677		97.48
KOG2471|consensus	696		97.44
KOG3081|consensus	299		97.42
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.4
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.38
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.37
KOG3081|consensus	299		97.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.35
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.35
KOG0551|consensus	390		97.34
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.32
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.29
KOG2796|consensus	366		97.28
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.27
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.25
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.24
KOG3616|consensus	1636		97.18
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.17
KOG1839|consensus	1236		97.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.1
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.07
KOG1463|consensus	411		97.06
KOG0545|consensus	329		97.03
KOG4642|consensus	284		96.99
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.99
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.96
PF13428	44	TPR_14: Tetratricopeptide repeat	96.88
KOG2610|consensus	491		96.86
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.85
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.84
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.83
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.8
KOG3609|consensus	822		96.76
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.76
PF13428	44	TPR_14: Tetratricopeptide repeat	96.74
KOG2505|consensus	591		96.72
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.7
KOG2471|consensus	696		96.69
KOG2505|consensus	591		96.65
KOG1550|consensus	552		96.64
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.61
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.56
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.52
PF13431	34	TPR_17: Tetratricopeptide repeat	96.5
KOG2053|consensus	932		96.46
KOG2041|consensus	1189		96.43
KOG1463|consensus	411		96.4
PF13431	34	TPR_17: Tetratricopeptide repeat	96.39
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.32
KOG2581|consensus	493		96.23
KOG0545|consensus	329		96.18
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.15
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.12
KOG4322|consensus	482		96.02
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.98
KOG1550|consensus	552		95.97
KOG2610|consensus	491		95.92
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.88
KOG2581|consensus	493		95.86
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.71
KOG0376|consensus	476		95.7
KOG1308|consensus	377		95.67
KOG0686|consensus	466		95.61
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.6
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	95.56
KOG0686|consensus	466		95.46
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.45
KOG2041|consensus	1189		95.33
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.31
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.31
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.03
KOG4814|consensus	872		94.92
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.82
KOG0985|consensus	1666		94.8
KOG4507|consensus	886		94.73
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.7
KOG0376|consensus	476		94.54
KOG1308|consensus	377		94.49
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.33
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.31
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.31
KOG4814|consensus	872		94.28
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.22
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.16
KOG0687|consensus	393		94.03
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.65
KOG4014|consensus	248		93.54
KOG2053|consensus	932		93.5
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.32
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.28
KOG3783|consensus	546		93.05
KOG2114|consensus	933		92.9
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	92.88
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.75
KOG4322|consensus	482		92.73
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.62
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.59
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.57
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.2
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.97
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	91.63
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	91.59
KOG4507|consensus	886		91.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.34
KOG0985|consensus	1666		91.29
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.97
KOG1538|consensus	1081		90.9
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.82
COG5187	412	RPN7 26S proteasome regulatory complex component,	90.44
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.25
KOG3807|consensus	556		90.13
KOG2114|consensus	933		89.91
KOG1497|consensus	399		89.01
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.99
KOG4521|consensus	1480		88.91
KOG3364|consensus	149		88.73
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	88.67
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.56
KOG4014|consensus	248		88.47
COG5187	412	RPN7 26S proteasome regulatory complex component,	88.14
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	87.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.68
PRK10941	269	hypothetical protein; Provisional	87.59
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	87.37
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.3
KOG1914|consensus	656		87.29
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	86.73
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.61
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.19
COG3014	449	Uncharacterized protein conserved in bacteria [Fun	85.93
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.77
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.59
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.05
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	85.0
PF12309	371	KBP_C: KIF-1 binding protein C terminal; InterPro:	84.98
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	84.9
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	84.62
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.14
COG3947	361	Response regulator containing CheY-like receiver a	83.91
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	83.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	83.61
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	83.6
KOG0890|consensus	2382		83.3
PRK10941	269	hypothetical protein; Provisional	83.29
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.24
KOG2908|consensus	380		82.48
KOG3364|consensus	149		81.93
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	81.28
KOG2561|consensus	568		81.22
KOG2561|consensus	568		81.11
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.01
PHA02537	230	M terminase endonuclease subunit; Provisional	80.89
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	80.76
KOG4521|consensus	1480		80.76
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.52
KOG0890|consensus	2382		80.49
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	80.26
KOG0687|consensus	393		80.09

>KOG4412|consensus

Probab=99.96  E-value=6.7e-29  Score=194.65  Aligned_cols=155  Identities=32%  Similarity=0.432  Sum_probs=140.5

Q ss_pred             hHhhhccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhcccc
Q psy875          307 DKRTNRKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLE  373 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~  373 (480)
                      ..+.++.|+||||+++..+            +..+|-.+..+.+|+|.|+..|+.++|+-|+.+ |+|+|...+      
T Consensus        31 ~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn------  104 (226)
T KOG4412|consen   31 NARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN------  104 (226)
T ss_pred             hccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC------
Confidence            3445557999999886654            444556678889999999999999999999999 999998754      


Q ss_pred             CCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCC
Q psy875          374 TPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG  453 (480)
Q Consensus       374 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g  453 (480)
                                .|.||||+|+..|..+++.+|+++|+.++.+|..|.||||.|+.-|.++++++|+..|+.+|  ++|+.|
T Consensus       105 ----------~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G  172 (226)
T KOG4412|consen  105 ----------GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYG  172 (226)
T ss_pred             ----------CCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccC
Confidence                      39999999999999999999999999999999999999999999999999999999999999  779999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          454 WLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       454 ~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +||||.|..-|+.++..+|+++||++
T Consensus       173 ~TpL~~al~e~~~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  173 FTPLHHALAEGHPDVAVLLVRAGADT  198 (226)
T ss_pred             ccHHHHHHhccCchHHHHHHHhccce
Confidence            99999999999999999999999986

>KOG4412|consensus

Probab=99.93  E-value=2.9e-26  Score=179.90  Aligned_cols=129  Identities=31%  Similarity=0.383  Sum_probs=118.4

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHh-cCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSL-LNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPV  411 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~  411 (480)
                      -++.++|||||..|+.++|.+|++ .+..++..                |..|+||||+|+..|+.++|+.|+.. |+|+
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk----------------DdaGWtPlhia~s~g~~evVk~Ll~r~~adv   99 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK----------------DDAGWTPLHIAASNGNDEVVKELLNRSGADV   99 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhcCCCCCCCc----------------cccCCchhhhhhhcCcHHHHHHHhcCCCCCc
Confidence            378899999999999999999995 44455443                34599999999999999999999999 9999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |..+..|.||||+|+..|..+++++|+++|+.++  +.|..|.||||-|+.-|.++++++|+..|+.+|
T Consensus       100 na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplHRAAavGklkvie~Li~~~a~~n  166 (226)
T KOG4412|consen  100 NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN  166 (226)
T ss_pred             ceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhHHHHhccchhhHHHHHhcCCCCC
Confidence            9999999999999999999999999999999999  559999999999999999999999999998775

>KOG4626|consensus

Probab=99.93  E-value=5.1e-25  Score=204.59  Aligned_cols=228  Identities=18%  Similarity=0.267  Sum_probs=120.1

Q ss_pred             HHhhccchhhhhhhHHHH-hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Q psy875            6 ALSRGIGLSDSLDSACTE-LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL   84 (480)
Q Consensus         6 ~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~   84 (480)
                      |-++|.+ +..-+..... ....+...+.+....+|++||.+|...+.|+.|+.+|.+|+.+    .+..+.++.++|.+
T Consensus       221 wsnLg~~-f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~i  295 (966)
T KOG4626|consen  221 WSNLGCV-FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACI  295 (966)
T ss_pred             ehhcchH-HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEE
Confidence            4455555 4333332222 1222333444556667777777777777777777777777766    56666666666666


Q ss_pred             HHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh
Q psy875           85 YELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD  164 (480)
Q Consensus        85 y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~  164 (480)
                      |+.+ |..+-|+..|++|+++.+      ....+|.|||......|+..+|..+|.+++...  +..+.+.+|||.+|.+
T Consensus       296 Yyeq-G~ldlAI~~Ykral~~~P------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  296 YYEQ-GLLDLAIDTYKRALELQP------NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYRE  366 (966)
T ss_pred             Eecc-ccHHHHHHHHHHHHhcCC------CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHH
Confidence            5555 666666666666666532      223445555555555555555555555555333  2333444555555555


Q ss_pred             hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875          165 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH  244 (480)
Q Consensus       165 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  244 (480)
                      +|.+++|..+|+++++.    .+..+.++.+||.+|.++|+ +++|+.+|++|+++      .+..++++.++|.+|..+
T Consensus       367 ~~~~e~A~~ly~~al~v----~p~~aaa~nNLa~i~kqqgn-l~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEV----FPEFAAAHNNLASIYKQQGN-LDDAIMCYKEALRI------KPTFADALSNMGNTYKEM  435 (966)
T ss_pred             hccchHHHHHHHHHHhh----ChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHHhc------CchHHHHHHhcchHHHHh
Confidence            55555555555555544    34444445555555555555 55555555555444      333444444444444444


Q ss_pred             CChHHHHHHHHHHH
Q psy875          245 DKFTELEQIKTELK  258 (480)
Q Consensus       245 g~~~~A~~~~~~~~  258 (480)
                      |+...|.+.+.+++
T Consensus       436 g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAI  449 (966)
T ss_pred             hhHHHHHHHHHHHH
Confidence            44444444444443

>KOG4626|consensus

Probab=99.93  E-value=1e-24  Score=202.65  Aligned_cols=234  Identities=17%  Similarity=0.233  Sum_probs=205.4

Q ss_pred             hhHHHhhccchhhhhhhHHHHh-hhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875            3 FKIALSRGIGLSDSLDSACTEL-HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI   81 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l   81 (480)
                      .+.|+|+|.+ +......-.++ -..+.....+..+.++-++|.+|+.+|+.+.||.+|++|+++    .|....+|+++
T Consensus       252 ~dAYiNLGnV-~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~Nl  326 (966)
T KOG4626|consen  252 LDAYINLGNV-YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNL  326 (966)
T ss_pred             hHHHhhHHHH-HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHH
Confidence            4679999999 55554422221 111223344566889999999999999999999999999999    77777899999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT  161 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~  161 (480)
                      |.. ....|+..+|..+|.+|+.+...      .+.+.+|||.+|..+|+++.|...|.+++...  +..+.++.|||.+
T Consensus       327 anA-Lkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i  397 (966)
T KOG4626|consen  327 ANA-LKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASI  397 (966)
T ss_pred             HHH-HHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHH
Confidence            999 77779999999999999998653      36788999999999999999999999999777  5678899999999


Q ss_pred             HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875          162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY  241 (480)
Q Consensus       162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  241 (480)
                      |.++|++++|+.+|++++++    .|..+.++.++|..|..+|+ ...|+..|.+|+.+      .+..+++..+|+.+|
T Consensus       398 ~kqqgnl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~------nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  398 YKQQGNLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQI------NPTFAEAHSNLASIY  466 (966)
T ss_pred             HHhcccHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhc------CcHHHHHHhhHHHHh
Confidence            99999999999999999999    78889999999999999999 99999999999988      788999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHH
Q psy875          242 KKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       242 ~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ...|+..+|++.|+.+..++
T Consensus       467 kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  467 KDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             hccCCcHHHHHHHHHHHccC
Confidence            99999999999999998765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.1e-24  Score=196.12  Aligned_cols=148  Identities=17%  Similarity=0.149  Sum_probs=114.4

Q ss_pred             cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||||+++..+           +.+++..+..+.++++.|+..|+.+++++|+++|++++....              
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~--------------  125 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK--------------  125 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCC--------------
Confidence            3567777765543           345556666777777777777777777777777777765432              


Q ss_pred             CCCC-chHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH-HH
Q psy875          382 KPRG-ETALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP-LH  458 (480)
Q Consensus       382 ~~~g-~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp-l~  458 (480)
                        .| .||||+|+..|+.+++++|++++.+.  .| ..|.||||+|+..|+.+++++|+++|++++  ..|..|.|| ||
T Consensus       126 --~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n--~~d~~g~t~~L~  199 (284)
T PHA02791        126 --TGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK  199 (284)
T ss_pred             --CCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCChHHH
Confidence              25 58899999999999999998886543  23 247899999999999999999999999998  458888876 99


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Q psy875          459 EAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|+..|+.+++++|+++|+++|
T Consensus       200 ~Aa~~~~~e~v~lLl~~Ga~in  221 (284)
T PHA02791        200 LAIDNKDLEMLQALFKYDINIY  221 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCc
Confidence            9999999999999999999885

>PHA02791 ankyrin-like protein; Provisional

Probab=99.91  E-value=8.2e-24  Score=190.42  Aligned_cols=148  Identities=20%  Similarity=0.195  Sum_probs=118.5

Q ss_pred             hccCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          311 NRKRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       311 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      +..|.||||+++..           .+.+++..  ++.+|++.|+..|+.++|++|+++|++++..+             
T Consensus        27 D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d-------------   91 (284)
T PHA02791         27 DVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFD-------------   91 (284)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC-------------
Confidence            44577777777543           34445443  35789999999999999999999999887653             


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-hHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW-LPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPL  457 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl  457 (480)
                         ..|.||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++++..    | ..|.|||
T Consensus        92 ---~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~----d~~~g~TpL  164 (284)
T PHA02791         92 ---DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCI  164 (284)
T ss_pred             ---CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc----ccccCccHH
Confidence               3489999999999999999999999999888887775 89999999999999999998875442    2 2478999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCC
Q psy875          458 HEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       458 ~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+|+..|+.+++++|+++|++++
T Consensus       165 h~Aa~~g~~eiv~lLL~~gAd~n  187 (284)
T PHA02791        165 HITIKNGHVDMMILLLDYMTSTN  187 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999999998875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.4e-23  Score=177.90  Aligned_cols=154  Identities=18%  Similarity=0.136  Sum_probs=131.7

Q ss_pred             hhccCCccchhhhccCCCc--------CCCCcCCCchHHHHHHhh--CcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          310 TNRKRAPRSHFLIKRNDKD--------SNLNLYNIESITISRNRL--GAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~--~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      ...++.||||.++..+..+        ++..+..+.+|++.|+..  ++.+++++|+++|++++....            
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~------------   84 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTR------------   84 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCC------------
Confidence            3556788898888877752        455667788999999875  489999999999999987632            


Q ss_pred             cCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875          380 LEKPRGETALHVAAAR---GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAAN--HGHTDIVQALVSAGADPNDKVQDSAGW  454 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~g~  454 (480)
                         ..|.||||+|+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++  ..|..|.
T Consensus        85 ---~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~  159 (209)
T PHA02859         85 ---DNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNN  159 (209)
T ss_pred             ---CCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCC
Confidence               2399999998864   47999999999999999999999999999876  468999999999999999  5699999


Q ss_pred             cHHHH-HHHcCCHHHHHHHHHcCCCCC
Q psy875          455 LPLHE-AANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       455 tpl~~-A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ||||. |+..++.+++++|+++|++++
T Consensus       160 t~Lh~~a~~~~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        160 NILYSYILFHSDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            99996 566789999999999999885

>KOG1840|consensus

Probab=99.90  E-value=4.6e-21  Score=182.77  Aligned_cols=241  Identities=20%  Similarity=0.293  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      ...++.....+|.+|..+++|.+|+..|++|+.+.    +.+++..+.++.+||.+|+.. |+|++|..++++|+++.++
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHH
Confidence            45667777789999999999999999999999997    678899999999999997666 9999999999999999877


Q ss_pred             C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      .  ..++.++..+.+++.++..++++++|+.++++++.+...      +.++.++.+||.+|..+|+|++|.++|++|+.
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            3  355788889999999999999999999999988865442      36788999999999999999999999999999


Q ss_pred             hhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875          181 LHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       181 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      +...    ........+.++|..|.+.++ +.+|...|.++..+.+..+ +.+.....|.+|+.+|..+|+++.|.++..
T Consensus       396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~  474 (508)
T KOG1840|consen  396 ILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE  474 (508)
T ss_pred             HHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            8644    467778899999999999999 9999999999999986655 667899999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCcccc
Q psy875          256 ELKSLEEKLDLNSSSDEEDT  275 (480)
Q Consensus       256 ~~~~l~~~~~~~~~~~~~~~  275 (480)
                      .+....+..+.......+++
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~  494 (508)
T KOG1840|consen  475 KVLNAREQRLGTASPTVEDE  494 (508)
T ss_pred             HHHHHHHHcCCCCCcchhHH
Confidence            99998888777555554444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.9e-22  Score=196.23  Aligned_cols=151  Identities=22%  Similarity=0.250  Sum_probs=103.4

Q ss_pred             cCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||||+|+..+..           +++.....+.++++.|+..|+.++|+.|++.|++++..               .
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---------------~   98 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDV---------------F   98 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccccc---------------c
Confidence            466777766554333           33344455667777777777777777777777654321               1


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~~A~  176 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLIIAM  176 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHHHHH
Confidence            2347777777777777777777777777777777777777777777777777777777777777  44777777777777


Q ss_pred             HcCCHHHHHHHHHcCCCCC
Q psy875          462 NHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ..|+.+++++|+++|++++
T Consensus       177 ~~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        177 AKGDIAICKMLLDSGANID  195 (413)
T ss_pred             HcCCHHHHHHHHhCCCCCC
Confidence            7777777777777777664

>KOG0509|consensus

Probab=99.89  E-value=2.4e-23  Score=195.21  Aligned_cols=154  Identities=30%  Similarity=0.304  Sum_probs=123.3

Q ss_pred             hhhccCCccchhhhccCCC-----------cCCCCc-CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCC
Q psy875          309 RTNRKRAPRSHFLIKRNDK-----------DSNLNL-YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPT  376 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~  376 (480)
                      ..++.|-++||.|..++..           ++|..+ .-+.+|+|||+++|+..+|.+|+++||||+..+          
T Consensus        73 ~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D----------  142 (600)
T KOG0509|consen   73 NPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKD----------  142 (600)
T ss_pred             CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceec----------
Confidence            3455788888888766544           445444 667788889999999999999999998888764          


Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875          377 TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP  456 (480)
Q Consensus       377 ~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp  456 (480)
                            ..|.+|||.|+..|+.-+|-+|+.+|++++.+|..|+||||+|+..|+...+..|++.|+.++.. .|..|.||
T Consensus       143 ------~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~-d~~~g~Tp  215 (600)
T KOG0509|consen  143 ------KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLT-DDNHGNTP  215 (600)
T ss_pred             ------CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccc-ccccCCch
Confidence                  34888999999999888888888888888888888999999988888887788888888888843 33788899


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Q psy875          457 LHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       457 l~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      ||+|+..|+..++.+|++.|++.
T Consensus       216 LHwa~~~gN~~~v~Ll~~g~~~~  238 (600)
T KOG0509|consen  216 LHWAVVGGNLTAVKLLLEGGADL  238 (600)
T ss_pred             HHHHHhcCCcceEehhhhcCCcc
Confidence            99999888888888666666653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.9e-22  Score=196.23  Aligned_cols=150  Identities=21%  Similarity=0.249  Sum_probs=132.0

Q ss_pred             cCCccchhhhccCCCcC------------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875          313 KRAPRSHFLIKRNDKDS------------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL  380 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~  380 (480)
                      .+.||+|+++..+..+.            +.....+.+|+++|+..|+.+++++|+++|++++...              
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~--------------  132 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN--------------  132 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC--------------
Confidence            35677777776655432            3344567899999999999999999999999998754              


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCC-CcHHHH
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG-WLPLHE  459 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g-~tpl~~  459 (480)
                        ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.  .+..| .||+|+
T Consensus       133 --~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~--~~~~~~~t~l~~  208 (413)
T PHA02875        133 --TDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY--FGKNGCVAALCY  208 (413)
T ss_pred             --CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc--CCCCCCchHHHH
Confidence              3499999999999999999999999999999999999999999999999999999999999994  46655 589999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC
Q psy875          460 AANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       460 A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+..|+.+++++|+++|+|+|
T Consensus       209 A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        209 AIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             HHHcCCHHHHHHHHHCCcCcc
Confidence            999999999999999999985

>KOG0508|consensus

Probab=99.89  E-value=5e-23  Score=185.19  Aligned_cols=128  Identities=31%  Similarity=0.383  Sum_probs=109.2

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.+++++|+..||+++||+|+.+|+++|.....                ..|||..||..|++++|++|+++|+|++.
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T----------------NStPLraACfDG~leivKyLvE~gad~~I  145 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT----------------NSTPLRAACFDGHLEIVKYLVEHGADPEI  145 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCcccccccc----------------CCccHHHHHhcchhHHHHHHHHcCCCCcc
Confidence            45668888888999999999999999888875432                45889999999999999999999999988


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      .|..|.|.||+||..|+.+++++|++.|+|+|  ..+..|+|+||.|+..|+.+++++|+.+|+.+
T Consensus       146 anrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i  209 (615)
T KOG0508|consen  146 ANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALHDCAESGSVDIVQLLLKHGAKI  209 (615)
T ss_pred             cccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHHhhhhcccHHHHHHHHhCCcee
Confidence            88889999999999999999999999999998  45888999999999999999999999888754

>KOG0509|consensus

Probab=99.88  E-value=2.9e-22  Score=188.00  Aligned_cols=155  Identities=28%  Similarity=0.343  Sum_probs=137.4

Q ss_pred             HhhhccCC-ccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCc
Q psy875          308 KRTNRKRA-PRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGE  386 (480)
Q Consensus       308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  386 (480)
                      ......|+ ..++.++...+.+++..+..+-+++|||+.+++.+++++|+++|+++|.....               -+.
T Consensus        49 v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~---------------l~s  113 (600)
T KOG0509|consen   49 VKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV---------------LGS  113 (600)
T ss_pred             hhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC---------------CCC
Confidence            34445555 23444455548888888889999999999999999999999999999986421               188


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875          387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT  466 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~  466 (480)
                      ||||||+++|+..+|.+|+++|+|++.+|..|.+|||.|+..|+..+|-+|+.+|++++  ++|.+|+||||+|+..|+.
T Consensus       114 tPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLmwAaykg~~  191 (600)
T KOG0509|consen  114 TPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLMWAAYKGFA  191 (600)
T ss_pred             CcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999  7799999999999999998


Q ss_pred             HHHHHHHHcCCCC
Q psy875          467 DIVQALVSAGAEV  479 (480)
Q Consensus       467 ~~~~~Ll~~ga~~  479 (480)
                      ..+..|+..|+.+
T Consensus       192 ~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  192 LFVRRLLKFGASL  204 (600)
T ss_pred             HHHHHHHHhcccc
Confidence            8899999999876

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.88  E-value=7.7e-22  Score=192.70  Aligned_cols=157  Identities=27%  Similarity=0.383  Sum_probs=134.0

Q ss_pred             hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhh-------hccccCCCccccCCCCCchHHHHHHH
Q psy875          322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNL-------SATLETPTTSLLEKPRGETALHVAAA  394 (480)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~l~~a~~  394 (480)
                      +...+.+++..+..+.++++.|+..|+.+++++|+++|+++......       ...+..+......+..|.||||+|+.
T Consensus        54 Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~  133 (434)
T PHA02874         54 FIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIK  133 (434)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHH
Confidence            34455677777778889999999999999999999999987532110       00112333445567789999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          395 RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       395 ~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      .|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.||||+|+..|+.+++++|++
T Consensus       134 ~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n--~~~~~g~tpL~~A~~~g~~~iv~~Ll~  211 (434)
T PHA02874        134 KGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN--VKDNNGESPLHNAAEYGDYACIKLLID  211 (434)
T ss_pred             CCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999  569999999999999999999999999


Q ss_pred             cCCCCC
Q psy875          475 AGAEVS  480 (480)
Q Consensus       475 ~ga~~~  480 (480)
                      +|++++
T Consensus       212 ~g~~i~  217 (434)
T PHA02874        212 HGNHIM  217 (434)
T ss_pred             CCCCCc
Confidence            999864

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.88  E-value=6.5e-22  Score=196.66  Aligned_cols=150  Identities=28%  Similarity=0.358  Sum_probs=136.8

Q ss_pred             cCCccchhhhccC-------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          313 KRAPRSHFLIKRN-------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       313 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      .|.||+|+++..+             +.+++..+..+.+|++.|+..|+.+++++|+++|++++....            
T Consensus       140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~------------  207 (480)
T PHA03100        140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDI------------  207 (480)
T ss_pred             CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCC------------
Confidence            4777888777766             566777777899999999999999999999999999986543            


Q ss_pred             cCCCCC------chHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC
Q psy875          380 LEKPRG------ETALHVAAARGN--LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS  451 (480)
Q Consensus       380 ~~~~~g------~~~l~~a~~~~~--~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  451 (480)
                          .|      .||||.|+..|+  .+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++  .+|.
T Consensus       208 ----~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n--~~d~  281 (480)
T PHA03100        208 ----ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN--LVNK  281 (480)
T ss_pred             ----CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCC
Confidence                25      899999999999  999999999999999999999999999999999999999999999999  6699


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          452 AGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      .|.||+|+|+..++.+++++|+++|++++
T Consensus       282 ~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        282 YGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            99999999999999999999999999874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.88  E-value=6.3e-22  Score=197.51  Aligned_cols=152  Identities=25%  Similarity=0.269  Sum_probs=129.8

Q ss_pred             hccCCccchhhh-------------ccCCCcCCCCcCCCchHHHHHHhhCc--HHHHHHHHhcCCchhhhhhhhccccCC
Q psy875          311 NRKRAPRSHFLI-------------KRNDKDSNLNLYNIESITISRNRLGA--QEVRKLLSLLNADLLVHLNLSATLETP  375 (480)
Q Consensus       311 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~v~~L~~~g~~~~~~~~~~~~~~~~  375 (480)
                      +..|.||||.++             ...+.++|..+..+.||||.|+..|+  .++|++|+++|+|++..+.        
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~--------  245 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV--------  245 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC--------
Confidence            345778888753             23678899999999999999999995  5999999999999997643        


Q ss_pred             CccccCCCCCchHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy875          376 TTSLLEKPRGETALHVA-------------------------------------AARGNLTLVQSLLKQGHPVKVQDSAG  418 (480)
Q Consensus       376 ~~~~~~~~~g~~~l~~a-------------------------------------~~~~~~~~~~~ll~~g~~~~~~~~~g  418 (480)
                              .|.||||+|                                     +..|+.++++.|++.|++++.+|..|
T Consensus       246 --------~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G  317 (764)
T PHA02716        246 --------NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAG  317 (764)
T ss_pred             --------CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCC
Confidence                    377777754                                     45678899999999999999999999


Q ss_pred             ChHHHHHHH--cCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH--------------cCCHHHHHHHHHcCCCCC
Q psy875          419 WLPLHEAAN--HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN--------------HGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       419 ~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~--------------~~~~~~~~~Ll~~ga~~~  480 (480)
                      +||||+|+.  .++.+++++|+++|++++  .+|..|+||||+|+.              .++.+++++|+++|++++
T Consensus       318 ~TPLH~Aaa~~~~~~eIVklLLe~GADIN--~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn  393 (764)
T PHA02716        318 RTCLHQYILRHNISTDIIKLLHEYGNDLN--EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT  393 (764)
T ss_pred             CCHHHHHHHHhCCCchHHHHHHHcCCCCc--cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC
Confidence            999999764  468899999999999999  569999999999865              368999999999999985

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.1e-21  Score=164.11  Aligned_cols=138  Identities=17%  Similarity=0.130  Sum_probs=119.0

Q ss_pred             CCCcCCCCcCCCchHHHHHHhhCcH----HHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHH-
Q psy875          325 NDKDSNLNLYNIESITISRNRLGAQ----EVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLT-  399 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~a~~~~~~----~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~-  399 (480)
                      ++.+++.......+.++.|++.|+.    +++++|++.|++++..+                ..|.||||+|+..|+.+ 
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d----------------~~g~t~Lh~Aa~~g~~~~   72 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYD----------------HHGRQCTHMVAWYDRANA   72 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccC----------------CCCCcHHHHHHHhCccCH
Confidence            3445555566677788889999988    66778888998877543                34999999999998765 


Q ss_pred             --HHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875          400 --LVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA  475 (480)
Q Consensus       400 --~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  475 (480)
                        ++++|+..|+++|.++ ..|.||||+|+..++.+++++|+. .|++++  .++..|.||||+|+..++.+++++|+++
T Consensus        73 ~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743         73 VMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence              4899999999999998 589999999999999999999995 799999  5699999999999999999999999999


Q ss_pred             CCCCC
Q psy875          476 GAEVS  480 (480)
Q Consensus       476 ga~~~  480 (480)
                      |++++
T Consensus       151 ga~~~  155 (166)
T PHA02743        151 GAVCD  155 (166)
T ss_pred             CCCCC
Confidence            99875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.1e-21  Score=193.78  Aligned_cols=102  Identities=31%  Similarity=0.474  Sum_probs=93.2

Q ss_pred             ccccCCCC-CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCc
Q psy875          377 TSLLEKPR-GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL  455 (480)
Q Consensus       377 ~~~~~~~~-g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t  455 (480)
                      ..+..+.. |.||||+|+..|+.+++++|++.|++++.+|..|+||||.|+..|+.+++++|++.|++++  .+|..|.|
T Consensus       159 din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in--~~d~~g~T  236 (477)
T PHA02878        159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD--ARDKCGNT  236 (477)
T ss_pred             CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCC
Confidence            34445566 9999999999999999999999999999999999999999999999999999999999999  56999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHcCCCCC
Q psy875          456 PLHEAANH-GHTDIVQALVSAGAEVS  480 (480)
Q Consensus       456 pl~~A~~~-~~~~~~~~Ll~~ga~~~  480 (480)
                      |||+|+.. ++.+++++|+++|++++
T Consensus       237 pLh~A~~~~~~~~iv~~Ll~~gadvn  262 (477)
T PHA02878        237 PLHISVGYCKDYDILKLLLEHGVDVN  262 (477)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            99999975 78999999999999975

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=194.76  Aligned_cols=150  Identities=27%  Similarity=0.348  Sum_probs=137.3

Q ss_pred             cCCccchhhh--c-----------cCCCcCCCCcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875          313 KRAPRSHFLI--K-----------RNDKDSNLNLYNIESITISRNRLG--AQEVRKLLSLLNADLLVHLNLSATLETPTT  377 (480)
Q Consensus       313 ~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~  377 (480)
                      .|.||+|+|+  .           ..+.+++..+..+.++++.|+..|  +.+++++|+++|++++..+.          
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~----------  174 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR----------  174 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC----------
Confidence            4777888877  3           456677788889999999999999  99999999999999987643          


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC------ChHHHHHHHcCC--HHHHHHHHHcCCCCCCccC
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG------WLPLHEAANHGH--TDIVQALVSAGADPNDKVQ  449 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~  449 (480)
                            .|.||||+|+..|+.+++++|+++|++++..+..|      .||||.|+..|+  .+++++|+++|++++  .+
T Consensus       175 ------~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din--~~  246 (480)
T PHA03100        175 ------YGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN--IK  246 (480)
T ss_pred             ------CCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC--CC
Confidence                  49999999999999999999999999999999888      899999999999  999999999999999  56


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          450 DSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       450 ~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |..|.||||+|+..|+.+++++|+++|++++
T Consensus       247 d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n  277 (480)
T PHA03100        247 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPN  277 (480)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.87  E-value=2e-21  Score=181.39  Aligned_cols=145  Identities=17%  Similarity=0.076  Sum_probs=122.4

Q ss_pred             hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875          322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV  401 (480)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~  401 (480)
                      +...|++++..  .+.++++.|+..|+.+++++|+++|++..-...          ....+..+.+|+|.++..++.+++
T Consensus       137 LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~----------~~l~~~~~~t~l~~a~~~~~~eIv  204 (437)
T PHA02795        137 MVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVK----------LDLYKIIQYTRGFLVDEPTVLEIY  204 (437)
T ss_pred             HHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCccccccc----------chhhhhhccchhHHHHhcCHHHHH
Confidence            33455566553  447899999999999999999999985432110          011112378999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC--------CHHHHHHHH
Q psy875          402 QSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG--------HTDIVQALV  473 (480)
Q Consensus       402 ~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~--------~~~~~~~Ll  473 (480)
                      ++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|        +.+++++|+
T Consensus       205 e~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL  282 (437)
T PHA02795        205 KLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLDVAVDRGSVIARRETHLKILEILL  282 (437)
T ss_pred             HHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999  56999999999999988        469999999


Q ss_pred             HcCCCCC
Q psy875          474 SAGAEVS  480 (480)
Q Consensus       474 ~~ga~~~  480 (480)
                      ++|++++
T Consensus       283 ~~gadI~  289 (437)
T PHA02795        283 REPLSID  289 (437)
T ss_pred             hCCCCCC
Confidence            9999875

>KOG1840|consensus

Probab=99.87  E-value=1.4e-19  Score=172.68  Aligned_cols=239  Identities=18%  Similarity=0.198  Sum_probs=206.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL  105 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~  105 (480)
                      .+..+....+...+|..|..+|+|++|+..++.|++..    ....+..+.....+|.+ +...++|.+|+..|++|+.+
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~-y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALV-YRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHH
Confidence            34445566777779999999999999999999999985    44566667777779999 55559999999999999987


Q ss_pred             hhc--CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875          106 ARQ--NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNK  177 (480)
Q Consensus       106 ~~~--~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~  177 (480)
                      ...  ..+++..+.++.+||.+|...|+|++|..++++++.+...      +.++..+.+++.++..++++++|+.++++
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            764  4567889999999999999999999999999988876544      56788899999999999999999999999


Q ss_pred             HHhhhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCChHHHH
Q psy875          178 ELRLHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD--DKLIRTVMRSMKKLYKKHDKFTELE  251 (480)
Q Consensus       178 al~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~  251 (480)
                      ++++...    +++..+.++.+||.+|+.+|+ |++|.++|++|+.+.++...  .......+..|+..|.+.+++.+|.
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            9999664    566889999999999999999 99999999999999988765  6777889999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCC
Q psy875          252 QIKTELKSLEEKLDLNSSSD  271 (480)
Q Consensus       252 ~~~~~~~~l~~~~~~~~~~~  271 (480)
                      +.+.++..+. .....+.++
T Consensus       430 ~l~~~~~~i~-~~~g~~~~~  448 (508)
T KOG1840|consen  430 QLFEEAKDIM-KLCGPDHPD  448 (508)
T ss_pred             HHHHHHHHHH-HHhCCCCCc
Confidence            9999999999 555544333

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.86  E-value=6.7e-21  Score=188.33  Aligned_cols=139  Identities=22%  Similarity=0.281  Sum_probs=93.8

Q ss_pred             hccCCCcCCCCcCC-CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHH
Q psy875          322 IKRNDKDSNLNLYN-IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTL  400 (480)
Q Consensus       322 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~  400 (480)
                      +...+.+++..+.. +.+|+|.|+..|+.+++++|++.|++++..+                ..|.||||.|+..|+.++
T Consensus       153 Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d----------------~~g~tpLh~A~~~~~~~i  216 (477)
T PHA02878        153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD----------------KTNNSPLHHAVKHYNKPI  216 (477)
T ss_pred             HHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcC----------------CCCCCHHHHHHHhCCHHH
Confidence            33445566655555 6777777777777777777777777766543                236777777777777777


Q ss_pred             HHHHHhcCCCCCCCCCCCChHHHHHHHc-CCHHHHHHHHHcCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          401 VQSLLKQGHPVKVQDSAGWLPLHEAANH-GHTDIVQALVSAGADPNDKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       401 ~~~ll~~g~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      ++.|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++.  .+. .|.||||+|  .++.+++++|+++|+|
T Consensus       217 v~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~--~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad  292 (477)
T PHA02878        217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA--KSYILGLTALHSS--IKSERKLKLLLEYGAD  292 (477)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc--cCCCCCCCHHHHH--ccCHHHHHHHHHCCCC
Confidence            7777777777777777777777777754 567777777777777773  343 577777777  3566777777777776


Q ss_pred             CC
Q psy875          479 VS  480 (480)
Q Consensus       479 ~~  480 (480)
                      +|
T Consensus       293 in  294 (477)
T PHA02878        293 IN  294 (477)
T ss_pred             CC
Confidence            64

>PHA02798 ankyrin-like protein; Provisional

Probab=99.86  E-value=5.9e-21  Score=189.00  Aligned_cols=152  Identities=18%  Similarity=0.180  Sum_probs=126.9

Q ss_pred             ccCCccchhhhcc--------------CCCcCCCCcCCCchHHHHHHhhCc---HHHHHHHHhcCCchhhhhhhhccccC
Q psy875          312 RKRAPRSHFLIKR--------------NDKDSNLNLYNIESITISRNRLGA---QEVRKLLSLLNADLLVHLNLSATLET  374 (480)
Q Consensus       312 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~a~~~~~---~~~v~~L~~~g~~~~~~~~~~~~~~~  374 (480)
                      ..|.||||+++..              .|++++..+..+.+|++.|+..|+   .+++++|+++|++++...+.      
T Consensus       107 ~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~------  180 (489)
T PHA02798        107 SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNK------  180 (489)
T ss_pred             CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCc------
Confidence            3588899888764              467888889999999999999988   99999999999999876421      


Q ss_pred             CCccccCCCCCchHHHHHHHc----CCHHHHHHHHhcCC---------------------------------------CC
Q psy875          375 PTTSLLEKPRGETALHVAAAR----GNLTLVQSLLKQGH---------------------------------------PV  411 (480)
Q Consensus       375 ~~~~~~~~~~g~~~l~~a~~~----~~~~~~~~ll~~g~---------------------------------------~~  411 (480)
                               .|.||||.++..    ++.+++++|+++|+                                       ++
T Consensus       181 ---------~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dv  251 (489)
T PHA02798        181 ---------EKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDI  251 (489)
T ss_pred             ---------CCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence                     266677766543    25566666665554                                       55


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||.|+..++.++++.|+++|++++
T Consensus       252 N~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin--~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        252 NQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN--IITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             CCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc--ccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            6677789999999999999999999999999999  669999999999999999999999999998863

>KOG0508|consensus

Probab=99.85  E-value=1.2e-21  Score=176.37  Aligned_cols=144  Identities=32%  Similarity=0.354  Sum_probs=129.7

Q ss_pred             ccCCccchhhh-----------ccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875          312 RKRAPRSHFLI-----------KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL  380 (480)
Q Consensus       312 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~  380 (480)
                      ..|.+||+.+.           .+.++++|.......+||-.||.-|+.++||+|+++|+|+++.+.             
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr-------------  148 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR-------------  148 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc-------------
Confidence            45667776553           334477888888888999999999999999999999999998654             


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                         .|.|+||+||..|+.+++++|++.|+|+|.++..|.|+||.|+..|+.+++++|+++|+.+.   .|..|.|||..|
T Consensus       149 ---hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~~A  222 (615)
T KOG0508|consen  149 ---HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLLLA  222 (615)
T ss_pred             ---CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHHHH
Confidence               49999999999999999999999999999999999999999999999999999999999887   367799999999


Q ss_pred             HHcCCHHHHHHHHH
Q psy875          461 ANHGHTDIVQALVS  474 (480)
Q Consensus       461 ~~~~~~~~~~~Ll~  474 (480)
                      +..|+.+++.+|++
T Consensus       223 a~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  223 AVTGHTDIVERLLQ  236 (615)
T ss_pred             hhhcchHHHHHHhc
Confidence            99999999999986

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=187.11  Aligned_cols=168  Identities=21%  Similarity=0.199  Sum_probs=116.6

Q ss_pred             hhccCCccchhhhcc-------------CCCcCCCCcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhhhhhhcc---
Q psy875          310 TNRKRAPRSHFLIKR-------------NDKDSNLNLYNIESITISRNRLG--AQEVRKLLSLLNADLLVHLNLSAT---  371 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~~~~~~~---  371 (480)
                      .+..|.||||+++..             .+.+++..+..+.+|++.++..+  +.+++++|+++|++++..+..+.+   
T Consensus       113 ~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh  192 (471)
T PHA03095        113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH  192 (471)
T ss_pred             CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            344567777776622             23455555666677777666544  567777777777776554211110   


Q ss_pred             ----------------ccCCCccccCCCCCchHHHHHHHcCCH--HHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHH
Q psy875          372 ----------------LETPTTSLLEKPRGETALHVAAARGNL--TLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI  433 (480)
Q Consensus       372 ----------------~~~~~~~~~~~~~g~~~l~~a~~~~~~--~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  433 (480)
                                      +..+......+..|.||||+|+..|+.  .++..|++.|+++|.+|..|+||||+|+..|+.++
T Consensus       193 ~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~  272 (471)
T PHA03095        193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA  272 (471)
T ss_pred             HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence                            012223344566778888888877764  56777888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          434 VQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       434 ~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +++|+++|++++  .+|..|.||||+|+..|+.++++.|++.|+++
T Consensus       273 v~~LL~~gad~n--~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        273 CRRLIALGADIN--AVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHcCCCCc--ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            888888888888  55888888888888888888888888888765

>KOG1130|consensus

Probab=99.85  E-value=1.9e-20  Score=166.57  Aligned_cols=262  Identities=14%  Similarity=0.078  Sum_probs=223.0

Q ss_pred             HHHhhccchhhhhhhHHHH-------hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHH
Q psy875            5 IALSRGIGLSDSLDSACTE-------LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAV   75 (480)
Q Consensus         5 ~~~~~g~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~   75 (480)
                      ||-.+|.. |-.+.++..+       +-+++...+....+.+.-+||+++..+|.|++|+.++.+-+.+.  .++.....
T Consensus        57 IYsQLGNA-yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~  135 (639)
T KOG1130|consen   57 IYSQLGNA-YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES  135 (639)
T ss_pred             HHHHhcch-hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence            56666776 5556654443       66677777777778889999999999999999999999999886  56666778


Q ss_pred             HHHHHHHHHHHHhh-------------------ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH
Q psy875           76 KTLGEIGDLYELQE-------------------KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC  136 (480)
Q Consensus        76 ~~~~~lg~~y~~~~-------------------~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~  136 (480)
                      .+++++|.+|....                   ..++.|.++|..-+++....++......+|.+||..|+-+|+|+.|+
T Consensus       136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai  215 (639)
T KOG1130|consen  136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI  215 (639)
T ss_pred             HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence            89999999987652                   12677888999999999999999899999999999999999999999


Q ss_pred             HHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875          137 SELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELV  210 (480)
Q Consensus       137 ~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A  210 (480)
                      .+-+.-+.+...    ...-.++.|||++|.-+|+|+.|+++|++++.+...  +....+...+.||..|.-.+. +++|
T Consensus       216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e-~~kA  294 (639)
T KOG1130|consen  216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKE-VQKA  294 (639)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHH-HHHH
Confidence            999876655443    223568999999999999999999999998777544  667778889999999999999 9999


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCC
Q psy875          211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNS  268 (480)
Q Consensus       211 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~  268 (480)
                      +.|+++-+.++++.++.....+++..|+..|..+|..++|+.+.+...++..++....
T Consensus       295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s  352 (639)
T KOG1130|consen  295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS  352 (639)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999999999999999988877765543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=183.68  Aligned_cols=150  Identities=24%  Similarity=0.306  Sum_probs=131.1

Q ss_pred             cCCc-cchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHH
Q psy875          313 KRAP-RSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHV  391 (480)
Q Consensus       313 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~  391 (480)
                      .|+. .+..++..++..++.....+.+|++.|+..|+.++|++|++.|++++....                .|.||||.
T Consensus        11 ~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~----------------~~~t~L~~   74 (434)
T PHA02874         11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINT----------------KIPHPLLT   74 (434)
T ss_pred             cCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------------CCCCHHHH
Confidence            3443 344555666777787888889999999999999999999999999986533                48999999


Q ss_pred             HHHcCCHHHHHHHHhcCC-----------------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Q psy875          392 AAARGNLTLVQSLLKQGH-----------------------PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV  448 (480)
Q Consensus       392 a~~~~~~~~~~~ll~~g~-----------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  448 (480)
                      |+..|+.+++++|+++|+                       +++.++..|.||||+|+..|+.+++++|+++|++++  .
T Consensus        75 A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n--~  152 (434)
T PHA02874         75 AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN--I  152 (434)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC--C
Confidence            999999999999987764                       567788899999999999999999999999999999  5


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          449 QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       449 ~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|..|.||||+|+..|+.+++++|+++|++++
T Consensus       153 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        153 EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence            69999999999999999999999999999874

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.3e-20  Score=184.98  Aligned_cols=152  Identities=15%  Similarity=0.186  Sum_probs=113.8

Q ss_pred             hhccCCccchhhhc--------------cCCCcC-CCCcCCCchHHHHHHh--hCcHHHHHHHHhcCCchhhhhhhhccc
Q psy875          310 TNRKRAPRSHFLIK--------------RNDKDS-NLNLYNIESITISRNR--LGAQEVRKLLSLLNADLLVHLNLSATL  372 (480)
Q Consensus       310 ~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~a~~--~~~~~~v~~L~~~g~~~~~~~~~~~~~  372 (480)
                      .+..|.||||.++.              ..|.++ +..+..+.+|+|.|+.  .++.++|++|+++|++++...      
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~------  177 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKT------  177 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc------
Confidence            34457777776543              234555 5666677777777654  357788888888888876521      


Q ss_pred             cCCCccccCCCCCchHHHHHHHcC----CHHHHHHHHhcCCCCCCCC---------------------------------
Q psy875          373 ETPTTSLLEKPRGETALHVAAARG----NLTLVQSLLKQGHPVKVQD---------------------------------  415 (480)
Q Consensus       373 ~~~~~~~~~~~~g~~~l~~a~~~~----~~~~~~~ll~~g~~~~~~~---------------------------------  415 (480)
                               +..|.||||+|+..+    +.+++++|+++|++++.++                                 
T Consensus       178 ---------~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~ad  248 (494)
T PHA02989        178 ---------SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIK  248 (494)
T ss_pred             ---------cccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCC
Confidence                     224889999887754    7889999999998766443                                 


Q ss_pred             -----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          416 -----SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       416 -----~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                           ..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.++++.|++.++.
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin--~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY--NVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence                 448888888888888888888888888888  8888888888888888888888888887764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=2e-20  Score=185.54  Aligned_cols=119  Identities=16%  Similarity=0.112  Sum_probs=99.9

Q ss_pred             hccCCccchhhhcc-------------CCCcCCCCcCCCchHHHHHHhhCcH--HHHHHHHhcCCchhhhhhhhccccCC
Q psy875          311 NRKRAPRSHFLIKR-------------NDKDSNLNLYNIESITISRNRLGAQ--EVRKLLSLLNADLLVHLNLSATLETP  375 (480)
Q Consensus       311 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~a~~~~~~--~~v~~L~~~g~~~~~~~~~~~~~~~~  375 (480)
                      +..|.||+|+++..             .+.+++..+..+.+|+|.|+..|+.  .+++.|++.|++++..+         
T Consensus       184 d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d---------  254 (471)
T PHA03095        184 DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN---------  254 (471)
T ss_pred             CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC---------
Confidence            45577777766543             3455667777788888888887764  57777888888877654         


Q ss_pred             CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN  445 (480)
Q Consensus       376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  445 (480)
                             ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++++.|++.+++++
T Consensus       255 -------~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        255 -------RYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             -------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence                   359999999999999999999999999999999999999999999999999999999998887

>PHA02798 ankyrin-like protein; Provisional

Probab=99.84  E-value=3.1e-20  Score=183.90  Aligned_cols=142  Identities=21%  Similarity=0.238  Sum_probs=123.5

Q ss_pred             ccCCCcCCCCcCCCchHHHHHHhhC---cHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC--
Q psy875          323 KRNDKDSNLNLYNIESITISRNRLG---AQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN--  397 (480)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~--  397 (480)
                      ...|.++|..+..+.||+|+|+..+   +.+++++|+++|+|++..+                ..|.||||+|+..++  
T Consensus        96 l~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d----------------~~g~tpL~~a~~~~~~~  159 (489)
T PHA02798         96 IENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLD----------------KDGFTMLQVYLQSNHHI  159 (489)
T ss_pred             HHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccC----------------CCCCcHHHHHHHcCCcc
Confidence            3467889999999999999999875   7899999999999998764                359999999999987  


Q ss_pred             -HHHHHHHHhcCCCCCCCC-CCCChHHHHHHHc----CCHHHHHHHHHcCCCCCCc------------------------
Q psy875          398 -LTLVQSLLKQGHPVKVQD-SAGWLPLHEAANH----GHTDIVQALVSAGADPNDK------------------------  447 (480)
Q Consensus       398 -~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~----~~~~~~~~Ll~~g~~~~~~------------------------  447 (480)
                       .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|++++..                        
T Consensus       160 ~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~  239 (489)
T PHA02798        160 DIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKK  239 (489)
T ss_pred             hHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchH
Confidence             999999999999999885 5789999998764    4789999999888765521                        


Q ss_pred             -------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          448 -------------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       448 -------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                                   .+|..|.||||+|+..|+.+++++|+++|||+|
T Consensus       240 ~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin  285 (489)
T PHA02798        240 NILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN  285 (489)
T ss_pred             HHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence                         346789999999999999999999999999986

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=3e-20  Score=156.24  Aligned_cols=129  Identities=20%  Similarity=0.264  Sum_probs=112.4

Q ss_pred             CCcCCCchHHHHHHhhCcHHHHHHHHhc------CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC----HHH
Q psy875          331 LNLYNIESITISRNRLGAQEVRKLLSLL------NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN----LTL  400 (480)
Q Consensus       331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~  400 (480)
                      ..+..+.+++|.|++.|+.++++.|+..      |++++..                |..|.||||+|+..|+    .++
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~----------------d~~g~T~Lh~A~~~g~~~~~~~i   79 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT----------------DDAGQMCIHIAAEKHEAQLAAEI   79 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc----------------CCCCCcHHHHHHHcCChHHHHHH
Confidence            4455677888999999999999998643      4555543                4459999999999998    589


Q ss_pred             HHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875          401 VQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA  477 (480)
Q Consensus       401 ~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  477 (480)
                      +++|++.|+++|.++. .|+||||+|+..++.+++++|+. .|++++  ..|..|+||||+|+..++.+++++|++.++
T Consensus        80 i~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         80 IDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             HHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999985 89999999999999999999998 599998  569999999999999999999999998765

>KOG0510|consensus

Probab=99.84  E-value=1e-20  Score=181.43  Aligned_cols=157  Identities=31%  Similarity=0.330  Sum_probs=135.5

Q ss_pred             hHhhhccCCccchhhhccCCCc--------------------------CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCC
Q psy875          307 DKRTNRKRAPRSHFLIKRNDKD--------------------------SNLNLYNIESITISRNRLGAQEVRKLLSLLNA  360 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~  360 (480)
                      ....+..|.+|||.++..|...                          +|-.+.++-+|+|.|++.|+.+.|..|+..|+
T Consensus       218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga  297 (929)
T KOG0510|consen  218 INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA  297 (929)
T ss_pred             cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence            3344556788888887665431                          24457788999999999999999999999999


Q ss_pred             chhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh-cCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q psy875          361 DLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK-QGH-PVKVQDSAGWLPLHEAANHGHTDIVQALV  438 (480)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  438 (480)
                      +++.++.                ++.||||.|+.+|+.++|+.|++ .|. ..|..|-.|+||||.|+..||.+++++|+
T Consensus       298 ~I~~kn~----------------d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl  361 (929)
T KOG0510|consen  298 SINSKNK----------------DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLL  361 (929)
T ss_pred             cccccCC----------------CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHH
Confidence            9998753                59999999999999999999999 554 46888999999999999999999999999


Q ss_pred             HcCCCCCC-ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          439 SAGADPND-KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       439 ~~g~~~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +.|+.... .-.|++|.||||.|+..|+..+|++|+.+||+|
T Consensus       362 ~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  362 NKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             hcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            99998873 113899999999999999999999999999997

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.84  E-value=3e-20  Score=191.75  Aligned_cols=152  Identities=22%  Similarity=0.223  Sum_probs=114.9

Q ss_pred             hccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHh-hCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875          311 NRKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNR-LGAQEVRKLLSLLNADLLVHLNLSATLETPTT  377 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~-~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~  377 (480)
                      +..|.||||+++..+            +.+++..+..+.++++.|+. .++.+++++|++.|++++..+           
T Consensus       304 d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d-----------  372 (682)
T PHA02876        304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARD-----------  372 (682)
T ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCC-----------
Confidence            445777777777655            34556666667777777766 356777777777777776543           


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCC-HHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH-TDIVQALVSAGADPNDKVQDSAGWLP  456 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~~g~tp  456 (480)
                           ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+. ..++++|+++|++++  .+|..|+||
T Consensus       373 -----~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin--~~d~~G~Tp  445 (682)
T PHA02876        373 -----YCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN--SKNKDLSTP  445 (682)
T ss_pred             -----CCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC--cCCCCCChH
Confidence                 348888888888888888888888888888888888888888876555 466788888888888  558888888


Q ss_pred             HHHHHHcC-CHHHHHHHHHcCCCCC
Q psy875          457 LHEAANHG-HTDIVQALVSAGAEVS  480 (480)
Q Consensus       457 l~~A~~~~-~~~~~~~Ll~~ga~~~  480 (480)
                      ||+|+..| +.+++++|+++|+++|
T Consensus       446 Lh~Aa~~~~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        446 LHYACKKNCKLDVIEMLLDNGADVN  470 (682)
T ss_pred             HHHHHHhCCcHHHHHHHHHCCCCCC
Confidence            88888765 6788888888888875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.84  E-value=2.5e-20  Score=186.19  Aligned_cols=144  Identities=18%  Similarity=0.207  Sum_probs=123.3

Q ss_pred             hhhhccCCCcCCCC-cCCCchHHHHHHh--hCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc
Q psy875          319 HFLIKRNDKDSNLN-LYNIESITISRNR--LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR  395 (480)
Q Consensus       319 ~~~~~~~~~~~~~~-~~~~~~~~~~a~~--~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~  395 (480)
                      .+++..+..++|.. +..+.+++|+|+.  .++.+++++|+++|++++..+.                .|.||||+|+..
T Consensus       159 k~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~----------------~G~TPLH~Aa~~  222 (764)
T PHA02716        159 KYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN----------------HLITPLHTYLIT  222 (764)
T ss_pred             HHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC----------------CCCCHHHHHHHc
Confidence            34444443888887 7888999998764  4678999999999999997643                499999999999


Q ss_pred             CC--HHHHHHHHhcCCCCCCCCCCCChHHHHH-------------------------------------HHcCCHHHHHH
Q psy875          396 GN--LTLVQSLLKQGHPVKVQDSAGWLPLHEA-------------------------------------ANHGHTDIVQA  436 (480)
Q Consensus       396 ~~--~~~~~~ll~~g~~~~~~~~~g~t~l~~a-------------------------------------~~~~~~~~~~~  436 (480)
                      |+  .++|++|+++|+++|.+|..|+||||+|                                     +..|+.+++++
T Consensus       223 g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVkl  302 (764)
T PHA02716        223 GNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYS  302 (764)
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHH
Confidence            95  5899999999999999999999999975                                     34577899999


Q ss_pred             HHHcCCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCC
Q psy875          437 LVSAGADPNDKVQDSAGWLPLHEAAN--HGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       437 Ll~~g~~~~~~~~~~~g~tpl~~A~~--~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+++|++++  .+|..|+||||+|+.  .++.+++++|+++|++++
T Consensus       303 LLe~GAdIN--~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN  346 (764)
T PHA02716        303 FLQPGVKLH--YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN  346 (764)
T ss_pred             HHhCCCcee--ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc
Confidence            999999999  569999999999764  468999999999999985

>KOG1130|consensus

Probab=99.84  E-value=5.9e-20  Score=163.44  Aligned_cols=235  Identities=17%  Similarity=0.232  Sum_probs=207.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~  107 (480)
                      ..+.+.+..+|..||+.|+..++|++|++|-.--+.+.  .++....+.+.-++|.+ +..+|.|++|+.+-.+-+.+++
T Consensus        48 TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt-lKv~G~fdeA~~cc~rhLd~ar  126 (639)
T KOG1130|consen   48 TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT-LKVKGAFDEALTCCFRHLDFAR  126 (639)
T ss_pred             chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch-hhhhcccchHHHHHHHHhHHHH
Confidence            45677889999999999999999999999987766665  56666778888899999 6666999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHhccccc----ccHHHHHHHHHHHHH
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKHDN--------------------LDSACSELHTVLSSDLC----KDLASCYISLAQTYK  163 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~~~--------------------~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~  163 (480)
                      +.++.-..+.+++|+|.+|...|+                    ++.|.++|+.-+.....    .....+|-+||+.|+
T Consensus       127 eLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY  206 (639)
T KOG1130|consen  127 ELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY  206 (639)
T ss_pred             HHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee
Confidence            999999999999999999999884                    67788888866654433    233678999999999


Q ss_pred             hhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875          164 DNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY  241 (480)
Q Consensus       164 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  241 (480)
                      -+|+|+.|+.+-+.-+++.+.  +....-.++.+||.+|.-+|+ ++.|+++|++++.++.+.++....+...+.|+..|
T Consensus       207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNty  285 (639)
T KOG1130|consen  207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTY  285 (639)
T ss_pred             eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHH
Confidence            999999999999998888776  555667889999999999999 99999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          242 KKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       242 ~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      .-..++++|+.|+.+...+++++..
T Consensus       286 tll~e~~kAI~Yh~rHLaIAqeL~D  310 (639)
T KOG1130|consen  286 TLLKEVQKAITYHQRHLAIAQELED  310 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888877654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=4.8e-20  Score=165.74  Aligned_cols=126  Identities=21%  Similarity=0.176  Sum_probs=109.4

Q ss_pred             cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy875          333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK  412 (480)
Q Consensus       333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~  412 (480)
                      ..+..+++++|+..|+.+++++|+++|+|++....            ..+..|.||||+|+..++.+++++|+++|+++|
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~------------~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN   97 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILKLGADPEAPFP------------LSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN   97 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC
Confidence            45667899999999999999999999999987531            012349999999999999999999999999999


Q ss_pred             CC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy875          413 VQ-DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL  472 (480)
Q Consensus       413 ~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  472 (480)
                      .. +..|.||||+|+..++.+++++|+.+|++++  ..|..|.||||+|+..++.+++.++
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~~A~~~~~~~~~~~~  156 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIELALMICNNFLAFMI  156 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHhCChhHHHHh
Confidence            86 4679999999999999999999999999999  5699999999999987665554443

>PHA02946 ankyin-like protein; Provisional

Probab=99.84  E-value=3.5e-20  Score=179.56  Aligned_cols=150  Identities=18%  Similarity=0.168  Sum_probs=108.7

Q ss_pred             CcCCCCcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhh-hhhhc----------------cccCCCccccCCCCCch
Q psy875          327 KDSNLNLYNIESITISRNRLG--AQEVRKLLSLLNADLLVH-LNLSA----------------TLETPTTSLLEKPRGET  387 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~-~~~~~----------------~~~~~~~~~~~~~~g~~  387 (480)
                      .++|..+..+.+|+++|+..+  ..+++++|+++|++++.. +..+.                .+..+......+..|.|
T Consensus        96 Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t  175 (446)
T PHA02946         96 ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKN  175 (446)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCC
Confidence            344555555666666655443  356666666666665531 11000                00122223344567999


Q ss_pred             HHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875          388 ALHVAAARGN--LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHG--HTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH  463 (480)
Q Consensus       388 ~l~~a~~~~~--~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~  463 (480)
                      |||+|+..++  .+++++|++.|++++.+|..|+||||+|+..+  +.+++++|+. |++++  .+|..|.||||+|+..
T Consensus       176 ~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin--~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        176 HIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN--KQNKFGDSPLTLLIKT  252 (446)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC--CCCCCCCCHHHHHHHh
Confidence            9999987654  68999999999999999999999999999886  7889999885 89999  5699999999999999


Q ss_pred             CCH-HHHHHHHHcCCCC
Q psy875          464 GHT-DIVQALVSAGAEV  479 (480)
Q Consensus       464 ~~~-~~~~~Ll~~ga~~  479 (480)
                      ++. +++++|+++|+++
T Consensus       253 ~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        253 LSPAHLINKLLSTSNVI  269 (446)
T ss_pred             CChHHHHHHHHhCCCCC
Confidence            884 8999999999865

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=6.7e-20  Score=181.74  Aligned_cols=142  Identities=18%  Similarity=0.215  Sum_probs=117.5

Q ss_pred             hccCCCcCCCCcCCCchHHHHHHhh---CcHHHHHHHHhcCCch-hhhhhhhccccCCCccccCCCCCchHHHHHHHc--
Q psy875          322 IKRNDKDSNLNLYNIESITISRNRL---GAQEVRKLLSLLNADL-LVHLNLSATLETPTTSLLEKPRGETALHVAAAR--  395 (480)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~--  395 (480)
                      +...|.++|..+..+.+|++.|+..   |+.++|++|+++|+|+ +..+.                .|.||||+|+..  
T Consensus        94 Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~----------------~g~tpLh~a~~~~~  157 (494)
T PHA02989         94 LLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS----------------RGYNLLHMYLESFS  157 (494)
T ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC----------------CCCCHHHHHHHhcc
Confidence            4467888998888899999877654   7899999999999999 55432                499999998764  


Q ss_pred             CCHHHHHHHHhcCCCCCC-C-CCCCChHHHHHHHcC----CHHHHHHHHHcCCCCCCc----------------------
Q psy875          396 GNLTLVQSLLKQGHPVKV-Q-DSAGWLPLHEAANHG----HTDIVQALVSAGADPNDK----------------------  447 (480)
Q Consensus       396 ~~~~~~~~ll~~g~~~~~-~-~~~g~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~----------------------  447 (480)
                      ++.+++++|+++|++++. . .. |.||||+|+..+    +.+++++|+++|++++..                      
T Consensus       158 ~~~~iv~~Ll~~Gadi~~~~~~~-g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~  236 (494)
T PHA02989        158 VKKDVIKILLSFGVNLFEKTSLY-GLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKE  236 (494)
T ss_pred             CCHHHHHHHHHcCCCcccccccc-CCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccc
Confidence            688999999999999876 2 24 479999988764    889999999999887632                      


Q ss_pred             --------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          448 --------------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       448 --------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                                    .+|..|+||||+|+..|+.+++++|+++|+|++
T Consensus       237 ~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin  283 (494)
T PHA02989        237 FKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY  283 (494)
T ss_pred             hHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc
Confidence                          235569999999999999999999999999985

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.4e-19  Score=157.46  Aligned_cols=126  Identities=17%  Similarity=0.202  Sum_probs=109.1

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARG--NLTLVQSLLKQGHPV  411 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~ll~~g~~~  411 (480)
                      ....+|+++|+..|+.++|+.|++.+...                   +..|.||||+|+..+  +.+++++|+++|+++
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~n~~-------------------~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv   79 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFVNDC-------------------NDLYETPIFSCLEKDKVNVEILKFLIENGADV   79 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhhhcc-------------------CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC
Confidence            34568999999999999999998753222                   234999999999854  899999999999999


Q ss_pred             CCCC-CCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCC
Q psy875          412 KVQD-SAGWLPLHEAANH---GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN--HGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       412 ~~~~-~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~--~~~~~~~~~Ll~~ga~~~  480 (480)
                      |.++ ..|+||||+|+..   ++.+++++|+++|++++  ..|..|.||||+|+.  .++.+++++|+++|++++
T Consensus        80 n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin--~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin  152 (209)
T PHA02859         80 NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT--EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL  152 (209)
T ss_pred             CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence            9997 5899999998764   47999999999999999  569999999999876  468999999999999975

>PHA02946 ankyin-like protein; Provisional

Probab=99.83  E-value=9.1e-20  Score=176.65  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=118.6

Q ss_pred             hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-------------------cCCCccc-cC
Q psy875          322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-------------------ETPTTSL-LE  381 (480)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-------------------~~~~~~~-~~  381 (480)
                      +...+.++|..+..+.||||+|+..|+.++|++|+++|++++..+..+.++                   ..+...+ ..
T Consensus        58 Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~  137 (446)
T PHA02946         58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSV  137 (446)
T ss_pred             HHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccccc
Confidence            344577889999999999999999999999999999999998764332111                   1111111 23


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHG--HTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                      +..|.|||| |+..++.++++.|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++  .+|..|.||||+
T Consensus       138 d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH~  214 (446)
T PHA02946        138 DEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLHI  214 (446)
T ss_pred             CCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHHH
Confidence            566888886 55667888888888888888888888888888877654  4678888888888888  558888899998


Q ss_pred             HHHcC--CHHHHHHHHHcCCCCC
Q psy875          460 AANHG--HTDIVQALVSAGAEVS  480 (480)
Q Consensus       460 A~~~~--~~~~~~~Ll~~ga~~~  480 (480)
                      |+..+  +.+++++|+. |+++|
T Consensus       215 Aa~~~~~~~~iv~lLl~-gadin  236 (446)
T PHA02946        215 VCSKTVKNVDIINLLLP-STDVN  236 (446)
T ss_pred             HHHcCCCcHHHHHHHHc-CCCCC
Confidence            88875  7788888874 78775

>PHA02917 ankyrin-like protein; Provisional

Probab=99.83  E-value=5.3e-20  Score=185.04  Aligned_cols=151  Identities=17%  Similarity=0.197  Sum_probs=123.1

Q ss_pred             hhccCCccchhhhccCCCcCC-------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCC
Q psy875          310 TNRKRAPRSHFLIKRNDKDSN-------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPT  376 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~  376 (480)
                      ++..|.||||+++..+..+++             .+..+..+++++|+..|+.++|++|+++|+|++..+.         
T Consensus        64 ~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~---------  134 (661)
T PHA02917         64 KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE---------  134 (661)
T ss_pred             cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC---------
Confidence            344689999999887764322             1112233677889999999999999999999997643         


Q ss_pred             ccccCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCCCCCC---CC-----------ChHHHHHHH-----------cC
Q psy875          377 TSLLEKPRGETALHVAA--ARGNLTLVQSLLKQGHPVKVQDS---AG-----------WLPLHEAAN-----------HG  429 (480)
Q Consensus       377 ~~~~~~~~g~~~l~~a~--~~~~~~~~~~ll~~g~~~~~~~~---~g-----------~t~l~~a~~-----------~~  429 (480)
                             .|.||||.++  ..|+.+++++|+++|+++|..|.   .|           .||||+|+.           .+
T Consensus       135 -------~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  207 (661)
T PHA02917        135 -------NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYV  207 (661)
T ss_pred             -------CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccC
Confidence                   4999999654  46899999999999999987653   23           599999986           46


Q ss_pred             CHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCC
Q psy875          430 HTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT--DIVQALVSAGAEV  479 (480)
Q Consensus       430 ~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~--~~~~~Ll~~ga~~  479 (480)
                      +.+++++|+++|++++  ..|.+|.||||+|+..|+.  +++++|++ |+++
T Consensus       208 ~~eiv~~Li~~Gadvn--~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        208 RPEVVKCLINHGIKPS--SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             cHHHHHHHHHCCCCcc--cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence            8999999999999999  5599999999999999985  79999975 8765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=1.2e-19  Score=169.53  Aligned_cols=130  Identities=16%  Similarity=0.113  Sum_probs=115.7

Q ss_pred             CCcCCCchHHHHHHh--hCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q psy875          331 LNLYNIESITISRNR--LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQG  408 (480)
Q Consensus       331 ~~~~~~~~~~~~a~~--~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g  408 (480)
                      ......+++||.++.  .|+.++|++|+++|||++..                  ++.||+|.|+..++.+++++|+.+|
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~------------------~~~t~lh~A~~~~~~eIVk~Lls~G  172 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI------------------ECLNAYFRGICKKESSVVEFILNCG  172 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC------------------CCCCHHHHHHHcCcHHHHHHHHhcC
Confidence            455668899998888  89999999999999999863                  2689999999999999999999999


Q ss_pred             CCCC-CCC-----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          409 HPVK-VQD-----SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       409 ~~~~-~~~-----~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++.. ..+     ..|.||+|.|+..++.+++++|+++|+++|  ..|..|.||||+|+..|+.+++++|+++|++++
T Consensus       173 a~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN  248 (437)
T PHA02795        173 IPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN  248 (437)
T ss_pred             CcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            8543 221     347899999999999999999999999999  569999999999999999999999999999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=1.6e-19  Score=188.64  Aligned_cols=137  Identities=19%  Similarity=0.197  Sum_probs=99.0

Q ss_pred             cCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHH
Q psy875          324 RNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQS  403 (480)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~  403 (480)
                      +.+.++|..+..+.+++|.|+..|+.+++++|+++|++++..+                .+|.||||+|+..|+.++++.
T Consensus       546 ~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d----------------~~G~TpL~~A~~~g~~~iv~~  609 (823)
T PLN03192        546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD----------------ANGNTALWNAISAKHHKIFRI  609 (823)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC----------------CCCCCHHHHHHHhCCHHHHHH
Confidence            3444555666666666666666666666666666666665442                236666666666666666666


Q ss_pred             HHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          404 LLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       404 ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+..++..+.  ..|.+|||.|+..|+.++++.|+++|+++|  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       610 L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        610 LYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQVAMAEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             HHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            6655544332  234566677778888888899999999999  569999999999999999999999999999985

>KOG4177|consensus

Probab=99.81  E-value=1.1e-19  Score=184.98  Aligned_cols=169  Identities=31%  Similarity=0.363  Sum_probs=146.9

Q ss_pred             HhhhccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhh------
Q psy875          308 KRTNRKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLS------  369 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~------  369 (480)
                      ......|.|++|++...+            +.++|.....+.++++.|+..|+.++++.|++.++..+......      
T Consensus       434 ~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhl  513 (1143)
T KOG4177|consen  434 NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHL  513 (1143)
T ss_pred             hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhh
Confidence            345667899999999988            56778889999999999999999999999999985544432211      


Q ss_pred             -----------ccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q psy875          370 -----------ATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV  438 (480)
Q Consensus       370 -----------~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  438 (480)
                                 ..+........++..|.||||.||.+|+.++|++|+++|++++.++..|+||||.||..|+.+|+.+|+
T Consensus       514 a~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLl  593 (1143)
T KOG4177|consen  514 AADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLL  593 (1143)
T ss_pred             hhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHH
Confidence                       112456666677778999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       439 ~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      ++|+++|  ..|.+|.|||++|++.|+.++++.|+..|++
T Consensus       594 k~GA~vn--a~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  594 KHGASVN--AADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HcCCCCC--cccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            9999999  6699999999999999999999999998876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=2.5e-19  Score=148.65  Aligned_cols=97  Identities=18%  Similarity=0.278  Sum_probs=89.0

Q ss_pred             CCCCchHHHHHHHcCCH---HHHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcH
Q psy875          382 KPRGETALHVAAARGNL---TLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLP  456 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~---~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tp  456 (480)
                      +..|.||||+|+..|+.   +++++|++.|++++.++ ..|+||||+|+..++.+++++|+. .|++++  ..|..|.||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tp  129 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTP  129 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCH
Confidence            45699999999999986   46889999999999998 489999999999999999999998 499999  569999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          457 LHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       457 l~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ||+|+..|+.+++++|+.+|++++
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999863

>KOG0502|consensus

Probab=99.81  E-value=1.2e-19  Score=147.34  Aligned_cols=132  Identities=27%  Similarity=0.229  Sum_probs=119.7

Q ss_pred             CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHH
Q psy875          325 NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL  404 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l  404 (480)
                      .+..+|..+..+.++|+||+..|++++|++|++.|+|+...-..                .+++|.+|++.|..++|++|
T Consensus       149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~----------------resALsLAt~ggytdiV~lL  212 (296)
T KOG0502|consen  149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY----------------RESALSLATRGGYTDIVELL  212 (296)
T ss_pred             hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh----------------hhhhHhHHhcCChHHHHHHH
Confidence            55567888899999999999999999999999999999876443                78999999999999999999


Q ss_pred             HhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875          405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA  475 (480)
Q Consensus       405 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  475 (480)
                      ++.+.|+|.-|.+|.|||-+|++.+|.+|++.|+..|++++  ..+..|.+++..|+..|.. +|+.++++
T Consensus       213 L~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  213 LTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             HhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            99999999999999999999999999999999999999999  4588999999999999988 56555554

>KOG0510|consensus

Probab=99.80  E-value=1.9e-19  Score=172.79  Aligned_cols=166  Identities=25%  Similarity=0.211  Sum_probs=137.0

Q ss_pred             hccCCccchhhhccCC----------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccC
Q psy875          311 NRKRAPRSHFLIKRND----------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLET  374 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~  374 (480)
                      +..|.+|+|.+++.+.                ..+|..+.++.+|+|.|+..|+++.++.+++.|........ ......
T Consensus       184 ~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~-~~~~q~  262 (929)
T KOG0510|consen  184 DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQL-DAMQQE  262 (929)
T ss_pred             cCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhh-HHHHHH
Confidence            4467777887776654                36788899999999999999999999999999875543210 001122


Q ss_pred             CCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCC-CCCCccCCCC
Q psy875          375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGA-DPNDKVQDSA  452 (480)
Q Consensus       375 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~-~~~~~~~~~~  452 (480)
                      ....+-.|.+|.||||+|+..|+.+.+..|+..|++++.++.++.||||.|+..|+..+|+.|++ .|. ..|  ..|..
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rlln--e~D~~  340 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLN--ESDLH  340 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccc--ccccc
Confidence            23344567789999999999999999999999999999999999999999999999999999999 432 334  35789


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          453 GWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       453 g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      |.||||+|++.||..++++|+++||+.
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~~GA~~  367 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLNKGALF  367 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHhcChhh
Confidence            999999999999999999999999975

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.80  E-value=9.9e-19  Score=180.48  Aligned_cols=151  Identities=25%  Similarity=0.209  Sum_probs=133.2

Q ss_pred             ccCCccchhhhccC------------CCcCCCCcCCCchHHHHHHhhC-cHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875          312 RKRAPRSHFLIKRN------------DKDSNLNLYNIESITISRNRLG-AQEVRKLLSLLNADLLVHLNLSATLETPTTS  378 (480)
Q Consensus       312 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~-~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~  378 (480)
                      ..|.||||+++..+            +.+++..+..+.+++|.|+..| +.+++++|+..|++++..+.           
T Consensus       271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~-----------  339 (682)
T PHA02876        271 DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR-----------  339 (682)
T ss_pred             CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCccc-----------
Confidence            35888888887654            4466777888999999999999 69999999999999987643           


Q ss_pred             ccCCCCCchHHHHHHHc-CCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875          379 LLEKPRGETALHVAAAR-GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL  457 (480)
Q Consensus       379 ~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl  457 (480)
                           .|.||||+|+.. ++.++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||
T Consensus       340 -----~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~L  412 (682)
T PHA02876        340 -----LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTAL  412 (682)
T ss_pred             -----CCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchH
Confidence                 499999999985 57899999999999999999999999999999999999999999999999  5588999999


Q ss_pred             HHHHHcCC-HHHHHHHHHcCCCCC
Q psy875          458 HEAANHGH-TDIVQALVSAGAEVS  480 (480)
Q Consensus       458 ~~A~~~~~-~~~~~~Ll~~ga~~~  480 (480)
                      |+|+..++ ..++++|+++|+++|
T Consensus       413 h~A~~~~~~~~~vk~Ll~~gadin  436 (682)
T PHA02876        413 HFALCGTNPYMSVKTLIDRGANVN  436 (682)
T ss_pred             HHHHHcCCHHHHHHHHHhCCCCCC
Confidence            99988765 567999999999985

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=1.3e-17  Score=170.10  Aligned_cols=212  Identities=16%  Similarity=0.149  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      +..+.+++.+|.++..+|++++|+.+|++++++    .+....++..+|.+| ...|++++|+.++++++++.+..    
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~----  398 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVTQSYIKRASMN-LELGDPDKAEEDFDKALKLNSED----  398 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC----
Confidence            344555666666666666666666666666665    444445555666663 33366666666666665542211    


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                        ..++..+|.+|..+|++++|+.+|++++...+.  ...++.++|.++..+|++++|+.+|+++++..    |..+.++
T Consensus       399 --~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~  470 (615)
T TIGR00990       399 --PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF----PEAPDVY  470 (615)
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHH
Confidence              234555666666666666666666666554432  22445555555555555555555555555542    2233445


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-----------------------------------cHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKD-----------------------------------DKLIRTVMRSMK  238 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------------------------~~~~~~~~~~l~  238 (480)
                      ..+|.++..+|+ +++|+..|++++.+......                                   .+....++..+|
T Consensus       471 ~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la  549 (615)
T TIGR00990       471 NYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA  549 (615)
T ss_pred             HHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            555555555555 55555555555543221100                                   122233566788


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          239 KLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       239 ~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      .++..+|++++|..+++++.++..+
T Consensus       550 ~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       550 QLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHhcc
Confidence            8888888888888888888776554

>KOG1126|consensus

Probab=99.79  E-value=1.8e-18  Score=163.56  Aligned_cols=236  Identities=18%  Similarity=0.229  Sum_probs=182.1

Q ss_pred             hHHHhhccchhhhhhh-HHHH-hhhhhh-hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-------------
Q psy875            4 KIALSRGIGLSDSLDS-ACTE-LHTVLS-SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-------------   67 (480)
Q Consensus         4 ~~~~~~g~~~~~~l~~-~~~~-~~~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------   67 (480)
                      .++-.+|.. +.++.. .|.+ +.+-++ -.......++...+|..|+..++|++|.++|+.+.+..             
T Consensus       318 ~llr~~~~~-~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~  396 (638)
T KOG1126|consen  318 ELLRGLGEG-YRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTT  396 (638)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence            455666777 555555 4544 222222 22333566899999999999999999999999987651             


Q ss_pred             -----------------hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC
Q psy875           68 -----------------ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD  130 (480)
Q Consensus        68 -----------------~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~  130 (480)
                                       ....+....+|..+|++|..+ ++++.|+++|++|+.+.      +..+.+|..+|.-+....
T Consensus       397 LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQld------p~faYayTLlGhE~~~~e  469 (638)
T KOG1126|consen  397 LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLD------PRFAYAYTLLGHESIATE  469 (638)
T ss_pred             HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccC------CccchhhhhcCChhhhhH
Confidence                             123344456788999997677 99999999999999883      445788889999999999


Q ss_pred             ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875          131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV  210 (480)
Q Consensus       131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  210 (480)
                      .|++|..+|++++...+  ....+|+.||.+|.++++++.|+-+|++|+++    .|........+|.++.+.|+ .++|
T Consensus       470 e~d~a~~~fr~Al~~~~--rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~-~d~A  542 (638)
T KOG1126|consen  470 EFDKAMKSFRKALGVDP--RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKR-KDKA  542 (638)
T ss_pred             HHHhHHHHHHhhhcCCc--hhhHHHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhh-hhHH
Confidence            99999999999996664  45588999999999999999999999999999    55666778889999999999 9999


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       211 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +.+|++|+.+-      +.-.-..+..+.++..++++++|+..+++..++
T Consensus       543 L~~~~~A~~ld------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  543 LQLYEKAIHLD------PKNPLCKYHRASILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             HHHHHHHHhcC------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence            99999998762      222223346677888888888888887776654

>KOG0512|consensus

Probab=99.79  E-value=1.4e-18  Score=135.90  Aligned_cols=123  Identities=26%  Similarity=0.340  Sum_probs=106.5

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      ++...+.+|+..+.++.|+.|++..++               ..+.+|.+|.||||.|+.+|+.++|+.|+..|++++.+
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an---------------~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~  126 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKAN---------------HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK  126 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccc---------------cccccccccccHHHHHHhcCchHHHHHHHHccCCcccc
Confidence            455677889999999999999887654               34556788999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHH
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT-DIVQALVS  474 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~-~~~~~Ll~  474 (480)
                      ...||||||.||.+...+|+..|+.+|+|+|  .+.....||||+|+...+. ..+.+|+.
T Consensus       127 T~~GWTPLhSAckWnN~~va~~LLqhgaDVn--A~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  127 TNEGWTPLHSACKWNNFEVAGRLLQHGADVN--AQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             cccCccchhhhhcccchhHHHHHHhccCccc--ccccccchhhHHhhcccchHHHHHHHhh
Confidence            9999999999999999999999999999999  5577789999999977654 45566653

>KOG1155|consensus

Probab=99.79  E-value=2.3e-17  Score=149.35  Aligned_cols=204  Identities=16%  Similarity=0.206  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      ..+..+|+.|..+++.++|+.+|++|+++    ++....+|..||.- +..+++...|+..|++|+++.+..      -.
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHE-yvEmKNt~AAi~sYRrAvdi~p~D------yR  399 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHE-YVEMKNTHAAIESYRRAVDINPRD------YR  399 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHH-HHHhcccHHHHHHHHHHHhcCchh------HH
Confidence            35667899999999999999999999999    88889999999999 666699999999999999986532      57


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      +++.||+.|..++...=|+.||++++...|...  ..+..||.+|.++++.++|+++|++++...    .....++..||
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs--Rlw~aLG~CY~kl~~~~eAiKCykrai~~~----dte~~~l~~La  473 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDS--RLWVALGECYEKLNRLEEAIKCYKRAILLG----DTEGSALVRLA  473 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHhccHHHHHHHHHHHHhcc----ccchHHHHHHH
Confidence            899999999999999999999999998776544  789999999999999999999999999883    33467899999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ++|.+.++ +++|..+|++.++.....+. .+....+...|+..+.+.+++++|..|..++..
T Consensus       474 kLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  474 KLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            99999999 99999999999986644443 344666777799999999999999998766543

>KOG0502|consensus

Probab=99.78  E-value=2e-18  Score=140.40  Aligned_cols=147  Identities=27%  Similarity=0.196  Sum_probs=128.9

Q ss_pred             CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875          314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA  393 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~  393 (480)
                      |..-.+-....++...|..+.-+.+++.+++...+++.+..+.++-.+  ..                |..|.|||.||+
T Consensus       107 ~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN--~~----------------De~GfTpLiWAa  168 (296)
T KOG0502|consen  107 GSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVN--AC----------------DEFGFTPLIWAA  168 (296)
T ss_pred             CCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcccc--Cc----------------cccCchHhHHHH
Confidence            344445555667777788888889999999999999998888765433  22                345999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875          394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV  473 (480)
Q Consensus       394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  473 (480)
                      ..|++.+|++|++.|+++........|+|.+|++.|..++|++|+.++.|+|  +-|.+|.|||-+|++.+|.+|++.|+
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceeeeeecCChHHHHHHHH
Confidence            9999999999999999999998888999999999999999999999999999  66999999999999999999999999


Q ss_pred             HcCCCCC
Q psy875          474 SAGAEVS  480 (480)
Q Consensus       474 ~~ga~~~  480 (480)
                      ..||+++
T Consensus       247 ~sGAd~t  253 (296)
T KOG0502|consen  247 NSGADVT  253 (296)
T ss_pred             hcCCCcc
Confidence            9999985

>KOG0514|consensus

Probab=99.77  E-value=4.4e-18  Score=148.74  Aligned_cols=149  Identities=25%  Similarity=0.331  Sum_probs=123.0

Q ss_pred             HhhhccCCccchhhhccCCC------------cCCCCcCCCchHHHHHHh-----hCcHHHHHHHHhcCCchhhhhhhhc
Q psy875          308 KRTNRKRAPRSHFLIKRNDK------------DSNLNLYNIESITISRNR-----LGAQEVRKLLSLLNADLLVHLNLSA  370 (480)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~a~~-----~~~~~~v~~L~~~g~~~~~~~~~~~  370 (480)
                      +-.+..|+|+|||++...+.            +++..+..+-++.+.++.     ..+.++|.-|...| |+|.+-..  
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ--  338 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ--  338 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh--
Confidence            34556799999998877665            445556666677766654     46778888887775 56655442  


Q ss_pred             cccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCccC
Q psy875          371 TLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQ  449 (480)
Q Consensus       371 ~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~  449 (480)
                                   .|.|+|++|+.+|..++|+.||..|+|+|..|.+|.|+|++||.+||.+++++|+.. ++|+.  ..
T Consensus       339 -------------~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--Lt  403 (452)
T KOG0514|consen  339 -------------HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LT  403 (452)
T ss_pred             -------------hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--ee
Confidence                         299999999999999999999999999999999999999999999999999999986 66666  66


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          450 DSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       450 ~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      |.+|.|+|.+|...||.+|.-+|..
T Consensus       404 D~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  404 DVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             cCCCchhhhhHHhcCchHHHHHHHH
Confidence            9999999999999999999877754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.77  E-value=7e-17  Score=164.79  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           33 CKDLASCYISLAQTYK---DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      .......+..+|..+.   ..++|++|+++|+++++. ....+..+.++..+|.+|... |++++|+.++++++.+.+  
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~-~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal~l~P--  362 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL-GKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSIELDP--  362 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC--
Confidence            3455555666665543   458999999999999987 444567788899999995555 999999999999998744  


Q ss_pred             CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                          ....++..+|.++..+|++++|+.+|++++...+  ....+++.+|.+|...|++++|+.+|++++++    .|..
T Consensus       363 ----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l----~P~~  432 (615)
T TIGR00990       363 ----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL----DPDF  432 (615)
T ss_pred             ----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CccC
Confidence                2356788999999999999999999999987754  44578999999999999999999999999998    4445


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ...+.++|.++..+|+ +++|+..|++++..
T Consensus       433 ~~~~~~la~~~~~~g~-~~eA~~~~~~al~~  462 (615)
T TIGR00990       433 IFSHIQLGVTQYKEGS-IASSMATFRRCKKN  462 (615)
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence            6778899999999999 99999999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.77  E-value=2.1e-16  Score=141.20  Aligned_cols=204  Identities=14%  Similarity=0.214  Sum_probs=171.5

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ...+..++.+|..+...|++++|+..++++++.    .+....++..+|.+|... |++++|+.++++++...+..    
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~----   98 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNN----   98 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC----
Confidence            456788999999999999999999999999988    555667888899995555 99999999999999875432    


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                        ..++.++|.++...|++++|+.++++++.....+.....+.++|.++...|++++|..++.++++..+    .....+
T Consensus        99 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~  172 (234)
T TIGR02521        99 --GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP----QRPESL  172 (234)
T ss_pred             --HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CChHHH
Confidence              35778999999999999999999999987554455567788999999999999999999999998843    335678


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ..+|.++...|+ +++|..++++++...   +.   ....+..++.++...|+.++|..+.+.+..
T Consensus       173 ~~la~~~~~~~~-~~~A~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       173 LELAELYYLRGQ-YKDARAYLERYQQTY---NQ---TAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            899999999999 999999999998871   12   234455788999999999999998877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=6.3e-18  Score=126.15  Aligned_cols=86  Identities=43%  Similarity=0.664  Sum_probs=80.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy875          389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI  468 (480)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~  468 (480)
                      ||+|+..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADIN--SQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT---BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccccc--ccCCCCCCHHHHHHHcCCHHH
Confidence            7999999999999999999988876    8899999999999999999999999999  558999999999999999999


Q ss_pred             HHHHHHcCCCCC
Q psy875          469 VQALVSAGAEVS  480 (480)
Q Consensus       469 ~~~Ll~~ga~~~  480 (480)
                      +++|+++|++++
T Consensus        75 ~~~Ll~~g~~~~   86 (89)
T PF12796_consen   75 VKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHTTT-TT
T ss_pred             HHHHHHcCCCCC
Confidence            999999999985

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG1126|consensus

Probab=99.76  E-value=1.2e-17  Score=158.06  Aligned_cols=201  Identities=13%  Similarity=0.161  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      -..+|..+|++|.-+++++.|+++|++|+.+    .+..+++|..+|.- +.....|+.|..+|++|+.+..      ..
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE-~~~~ee~d~a~~~fr~Al~~~~------rh  488 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHE-SIATEEFDKAMKSFRKALGVDP------RH  488 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCCh-hhhhHHHHhHHHHHHhhhcCCc------hh
Confidence            3457899999999999999999999999999    78888999999999 6666999999999999998744      33


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      -.+++.+|.+|.++++++.|..+|++|+.+.|...  .+...+|.++.++|+.++|+.+|++|+.+    .+..+-..+.
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~~~~~k~~d~AL~~~~~A~~l----d~kn~l~~~~  562 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRIQHQLKRKDKALQLYEKAIHL----DPKNPLCKYH  562 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHHHHHhhhhhHHHHHHHHHHhc----CCCCchhHHH
Confidence            56899999999999999999999999999987655  56677999999999999999999999999    3444566778


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .|.+++..++ |++|+..+++..++      .+....++..+|++|.+.|+.+.|+..+--+..+
T Consensus       563 ~~~il~~~~~-~~eal~~LEeLk~~------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  563 RASILFSLGR-YVEALQELEELKEL------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHhhcc-hHHHHHHHHHHHHh------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            9999999999 99999999998777      5677889999999999999999999888665543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.76  E-value=2.7e-16  Score=130.38  Aligned_cols=206  Identities=16%  Similarity=0.151  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .....+.+...||.-|...|++..|...+++|++.    .|....+|..++.+| ...|+.+.|.+.|++|+.+.+..  
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Y-q~~Ge~~~A~e~YrkAlsl~p~~--  102 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYY-QKLGENDLADESYRKALSLAPNN--  102 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHH-HHcCChhhHHHHHHHHHhcCCCc--
Confidence            44567889999999999999999999999999999    888888999999995 55599999999999999997655  


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                          +.+++|.|.....+|+|++|..+|++++....-+..+.++-|+|.|-.++|+++.|.++|++++++.    +....
T Consensus       103 ----GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d----p~~~~  174 (250)
T COG3063         103 ----GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD----PQFPP  174 (250)
T ss_pred             ----cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC----cCCCh
Confidence                5689999999999999999999999999776666778999999999999999999999999999994    44455


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ....++..++..|+ |..|..++++...-      .......+....++-...|+-..|.+|-.+..+
T Consensus       175 ~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         175 ALLELARLHYKAGD-YAPARLYLERYQQR------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHHHhccc-chHHHHHHHHHHhc------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            67789999999999 99999998876543      225667778888899999999999988877655

>KOG0195|consensus

Probab=99.76  E-value=2.2e-18  Score=145.89  Aligned_cols=151  Identities=24%  Similarity=0.259  Sum_probs=125.6

Q ss_pred             hccCC-ccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHH
Q psy875          311 NRKRA-PRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETAL  389 (480)
Q Consensus       311 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l  389 (480)
                      ++.|+ ......+.....|.|..+..+-+++|||++.|+..+|+.|+..|+.+|..+-                ...|||
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm----------------gddtpl   71 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM----------------GDDTPL   71 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC----------------CCCcch
Confidence            34444 2345566777788899999999999999999999999999999999997643                267999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875          390 HVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV  469 (480)
Q Consensus       390 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~  469 (480)
                      |+|+..|+.++|..|+...+|+|..+..|.||||+||..|...+.+-|+..|+.++  +.++.|.|||..|...-..-+.
T Consensus        72 hlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpldkakp~l~~~l~  149 (448)
T KOG0195|consen   72 HLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLDKAKPMLKNTLL  149 (448)
T ss_pred             hhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchhhhchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999  6699999999887533222233


Q ss_pred             HHHHHcCCCC
Q psy875          470 QALVSAGAEV  479 (480)
Q Consensus       470 ~~Ll~~ga~~  479 (480)
                      +.--++|-++
T Consensus       150 e~aek~gq~~  159 (448)
T KOG0195|consen  150 EIAEKHGQSP  159 (448)
T ss_pred             HHHHHhCCCC
Confidence            3334455554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.76  E-value=9.7e-18  Score=168.84  Aligned_cols=150  Identities=11%  Similarity=0.087  Sum_probs=117.6

Q ss_pred             hccCCccchhhh--------------ccCCCcCCCCcCCCchHHHHHHhhCcHH----HHHHHHhcCCchhhhhhhhccc
Q psy875          311 NRKRAPRSHFLI--------------KRNDKDSNLNLYNIESITISRNRLGAQE----VRKLLSLLNADLLVHLNLSATL  372 (480)
Q Consensus       311 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~v~~L~~~g~~~~~~~~~~~~~  372 (480)
                      +..|+||||+++              ...+.+++..+..+.|||++|+..|+.+    +++.|++.+...+..       
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~-------  101 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN-------  101 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC-------
Confidence            445777777642              2356677777778888888888888744    456777765433332       


Q ss_pred             cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHH--HHcCCHHHHHHHHHcCCCCCCccCC
Q psy875          373 ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA--ANHGHTDIVQALVSAGADPNDKVQD  450 (480)
Q Consensus       373 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~  450 (480)
                                 +..+++|.|+..++.++|++|+++|+++|..|..|+||||.+  +..|+.+++++|+++|++++.  .|
T Consensus       102 -----------~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~--~d  168 (661)
T PHA02917        102 -----------DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY--ED  168 (661)
T ss_pred             -----------CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc--cc
Confidence                       134677888899999999999999999999999999999964  457899999999999999983  23


Q ss_pred             C---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCC
Q psy875          451 S---AG-----------WLPLHEAAN-----------HGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       451 ~---~g-----------~tpl~~A~~-----------~~~~~~~~~Ll~~ga~~~  480 (480)
                      .   .|           .||||+|+.           .++.+++++|+++|+|+|
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn  223 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS  223 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc
Confidence            2   33           599999986           468999999999999986

>PHA02730 ankyrin-like protein; Provisional

Probab=99.75  E-value=8.1e-18  Score=165.09  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=122.6

Q ss_pred             CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCc----HHHHHHHHhcCCc--hhhhhhhhccccCCCccccCCCCCch
Q psy875          314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGA----QEVRKLLSLLNAD--LLVHLNLSATLETPTTSLLEKPRGET  387 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~v~~L~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~g~~  387 (480)
                      .+..+.-++...|+++|.. ..+.+|||.|+..++    .+++++|+++|++  ++..+                ..|.|
T Consensus       357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd----------------~~G~T  419 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVS----------------NNGRL  419 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccc----------------cCCCc
Confidence            3456666677778999986 678899998887764    8999999999984  65443                34999


Q ss_pred             HHHH---HHHcC---------CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC-CCC
Q psy875          388 ALHV---AAARG---------NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS-AGW  454 (480)
Q Consensus       388 ~l~~---a~~~~---------~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~  454 (480)
                      |||.   +...+         ..+++++|+.+|+++|.+|..|.||||+|+..++.+++++|+.+|++++  ..+. .|.
T Consensus       420 ~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN--~~d~~~g~  497 (672)
T PHA02730        420 CMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVN--TTSRSIIN  497 (672)
T ss_pred             hHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCcCCc
Confidence            9984   33232         2357999999999999999999999999999999999999999999999  5575 599


Q ss_pred             cHHHHHHH--cCCHHHHHHHHHcCCCC
Q psy875          455 LPLHEAAN--HGHTDIVQALVSAGAEV  479 (480)
Q Consensus       455 tpl~~A~~--~~~~~~~~~Ll~~ga~~  479 (480)
                      ||||.|+.  .++.+++++|+++|+++
T Consensus       498 TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        498 TAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             CHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            99999987  47999999999999986

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.74  E-value=2.1e-17  Score=172.88  Aligned_cols=126  Identities=25%  Similarity=0.269  Sum_probs=116.0

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      ...+.++.|+..|+.++++.|++.|+|++..+                ..|.||||+|+..|+.++++.|+++|+++|.+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d----------------~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~  587 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGD----------------SKGRTPLHIAASKGYEDCVLVLLKHACNVHIR  587 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCc
Confidence            45688899999999999999999999998754                45999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |..|+||||+|+..|+.+++++|+..++..+    ...|.+|||.|+..|+.++++.|+++|+|+|
T Consensus       588 d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~----~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin  649 (823)
T PLN03192        588 DANGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD  649 (823)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhcCcccC----cccCchHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999887665    3457899999999999999999999999986

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=2.6e-17  Score=122.78  Aligned_cols=87  Identities=40%  Similarity=0.516  Sum_probs=80.5

Q ss_pred             HHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy875          340 TISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW  419 (480)
Q Consensus       340 ~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~  419 (480)
                      |+.|++.|+.+++++|++.|.+++.                    |.||||+|+..|+.+++++|++.|++++.+|..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--------------------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~   60 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--------------------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGN   60 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--------------------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSS
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--------------------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCC
Confidence            6889999999999999999988764                    68899999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy875          420 LPLHEAANHGHTDIVQALVSAGADPND  446 (480)
Q Consensus       420 t~l~~a~~~~~~~~~~~Ll~~g~~~~~  446 (480)
                      ||||+|+..|+.+++++|+++|++++.
T Consensus        61 t~L~~A~~~~~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   61 TALHYAAENGNLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             BHHHHHHHTTHHHHHHHHHHTTT-TTS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999983

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.73  E-value=2e-17  Score=162.32  Aligned_cols=143  Identities=11%  Similarity=0.042  Sum_probs=118.7

Q ss_pred             hccCCCcCC-CCcCCCchHHHHHHhhC---cHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcC-
Q psy875          322 IKRNDKDSN-LNLYNIESITISRNRLG---AQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARG-  396 (480)
Q Consensus       322 ~~~~~~~~~-~~~~~~~~~~~~a~~~~---~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~-  396 (480)
                      ..+.+.++| ..+..+.|+||+|+..|   +.++|++|+++|||++..+.                .|.||||+|+..+ 
T Consensus        26 ~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~----------------~G~TPLh~Aa~~~~   89 (672)
T PHA02730         26 EIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN----------------EGLTPLGVYSKRKY   89 (672)
T ss_pred             HHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC----------------CCCChHHHHHHcCC
Confidence            334444555 56667888888888876   59999999999999997654                5999999999976 


Q ss_pred             -CHHHHHHHHhcCCC--CCCCCCCCChHHHHHHH--cCCHHHHHHHHH-cCCCCCCc--cCC-CCCCcHHHHHHHcCCHH
Q psy875          397 -NLTLVQSLLKQGHP--VKVQDSAGWLPLHEAAN--HGHTDIVQALVS-AGADPNDK--VQD-SAGWLPLHEAANHGHTD  467 (480)
Q Consensus       397 -~~~~~~~ll~~g~~--~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~-~g~~~~~~--~~~-~~g~tpl~~A~~~~~~~  467 (480)
                       +.++|++|++.|++  ++..+..+++|||.++.  +++.+++++|+. .+++++..  ..+ ..|.+|++++...++++
T Consensus        90 ~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~e  169 (672)
T PHA02730         90 VKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPE  169 (672)
T ss_pred             CcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchH
Confidence             79999999999654  57778889999999888  899999999996 67888743  111 37999999999999999


Q ss_pred             HHHHHHHcCCCCC
Q psy875          468 IVQALVSAGAEVS  480 (480)
Q Consensus       468 ~~~~Ll~~ga~~~  480 (480)
                      ++++|+++||+++
T Consensus       170 IvklLi~~g~~v~  182 (672)
T PHA02730        170 VLLWLLKSECYST  182 (672)
T ss_pred             HHHHHHHcCCccc
Confidence            9999999999974

>KOG0505|consensus

Probab=99.73  E-value=1.2e-17  Score=153.87  Aligned_cols=136  Identities=32%  Similarity=0.412  Sum_probs=116.0

Q ss_pred             CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy875          327 KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK  406 (480)
Q Consensus       327 ~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~  406 (480)
                      ...+..+.++.+++|.+|.-.+.++|++|+++|+++|..++                .|+||||.|+..|+..++++|+.
T Consensus        64 a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~----------------e~wtPlhaaascg~~~i~~~li~  127 (527)
T KOG0505|consen   64 ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN----------------EGWTPLHAAASCGYLNIVEYLIQ  127 (527)
T ss_pred             CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc----------------ccCCcchhhcccccHHHHHHHHH
Confidence            44577777888888888888888888888888888887654                48888888888888888888888


Q ss_pred             cCCCCCCC-----------------------------------------------------------CCCCChHHHHHHH
Q psy875          407 QGHPVKVQ-----------------------------------------------------------DSAGWLPLHEAAN  427 (480)
Q Consensus       407 ~g~~~~~~-----------------------------------------------------------~~~g~t~l~~a~~  427 (480)
                      +|+++-..                                                           +..|.|.||.|+.
T Consensus       128 ~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa  207 (527)
T KOG0505|consen  128 HGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAA  207 (527)
T ss_pred             hhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHh
Confidence            77654322                                                           2228899999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          428 HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       428 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|..++..+|+++|.+++  +.|.+||||||.|+..|+.+++++|+++|++++
T Consensus       208 ~Gy~e~~~lLl~ag~~~~--~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d  258 (527)
T KOG0505|consen  208 NGYTEVAALLLQAGYSVN--IKDYDGWTPLHAAAHWGQEDACELLVEHGADMD  258 (527)
T ss_pred             hhHHHHHHHHHHhccCcc--cccccCCCcccHHHHhhhHhHHHHHHHhhcccc
Confidence            999999999999999999  669999999999999999999999999999874

>KOG4177|consensus

Probab=99.73  E-value=1.7e-17  Score=169.34  Aligned_cols=170  Identities=28%  Similarity=0.401  Sum_probs=140.4

Q ss_pred             hhhccCCccchhhhccCCCc-----------CCCCcCCCchHHHHHHhhC-cHHHHHHHHhcCCchhhhhhhhccc----
Q psy875          309 RTNRKRAPRSHFLIKRNDKD-----------SNLNLYNIESITISRNRLG-AQEVRKLLSLLNADLLVHLNLSATL----  372 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~-~~~~v~~L~~~g~~~~~~~~~~~~~----  372 (480)
                      .....|-||+|.+...+..+           .+.....+.+++|.|+..| ..++...++..|++++.....+.+.    
T Consensus       402 ~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhla  481 (1143)
T KOG4177|consen  402 SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLA  481 (1143)
T ss_pred             cCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhh
Confidence            34456778888886665543           3455666788999988888 8889999999999998875443331    


Q ss_pred             -------------cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q psy875          373 -------------ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS  439 (480)
Q Consensus       373 -------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  439 (480)
                                   ......+...+.+.+++|.+...+...+++.++++|++++.++..|.||||.||..|+.++|++|++
T Consensus       482 aq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe  561 (1143)
T KOG4177|consen  482 AQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE  561 (1143)
T ss_pred             hccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhh
Confidence                         2222334445668888888888888899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       440 ~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|++++  ..++.|+||||.|+..|+.+|+.+|+++||+||
T Consensus       562 ~gAdv~--ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  562 HGADVN--AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             CCcccc--ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC
Confidence            999999  558999999999999999999999999999986

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.72  E-value=2.2e-17  Score=136.94  Aligned_cols=126  Identities=20%  Similarity=0.131  Sum_probs=106.6

Q ss_pred             hhhHhhhccCCccchhhhccCCC-cC--------C-------CCcCCCchHHHHHHhhCcH---HHHHHHHhcCCchhhh
Q psy875          305 DQDKRTNRKRAPRSHFLIKRNDK-DS--------N-------LNLYNIESITISRNRLGAQ---EVRKLLSLLNADLLVH  365 (480)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~-~~--------~-------~~~~~~~~~~~~a~~~~~~---~~v~~L~~~g~~~~~~  365 (480)
                      .+....+..|.||||+++..+.. +.        +       ..+..+.+++|.|+..|+.   +++++|++.|++++..
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            34445667799999999999862 11        1       1255788999999999987   4688999999999876


Q ss_pred             hhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          366 LNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP  444 (480)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  444 (480)
                      +.               ..|.||||+|+..++.+++++|+.+ |++++.+|..|+||||+|+..|+.+++++|+.+|+++
T Consensus        88 ~~---------------~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         88 ER---------------VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CC---------------CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            42               2499999999999999999999985 9999999999999999999999999999999999887


Q ss_pred             C
Q psy875          445 N  445 (480)
Q Consensus       445 ~  445 (480)
                      +
T Consensus       153 ~  153 (154)
T PHA02736        153 K  153 (154)
T ss_pred             C
Confidence            5

>KOG0514|consensus

Probab=99.71  E-value=1.8e-17  Score=144.95  Aligned_cols=128  Identities=32%  Similarity=0.374  Sum_probs=112.3

Q ss_pred             CCCCcCCCchHHHHHHhhCcHHHHHHHHhcC-CchhhhhhhhccccCCCccccCCCCCchHHHHHHHc-----CCHHHHH
Q psy875          329 SNLNLYNIESITISRNRLGAQEVRKLLSLLN-ADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR-----GNLTLVQ  402 (480)
Q Consensus       329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~-----~~~~~~~  402 (480)
                      +|+-+.++.+.||+++..+|+++|+.|++.| ++++..+.-                |.||+++++..     .+..+|.
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA----------------GYtpiMLaALA~lk~~~d~~vV~  324 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA----------------GYTPVMLAALAKLKQPADRTVVE  324 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccc----------------cccHHHHHHHHhhcchhhHHHHH
Confidence            4666778999999999999999999999999 577665442                99999998874     3567888


Q ss_pred             HHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875          403 SLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA  475 (480)
Q Consensus       403 ~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  475 (480)
                      .|+.-| ++|.+- ..|.|+|++|+.+|..++|+.|+..|+|+|  ++|.+|.|+|++|+.+||.+|+++||..
T Consensus       325 ~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  325 RLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             HHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            888775 788775 579999999999999999999999999999  7799999999999999999999999863

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.70  E-value=1.3e-16  Score=133.49  Aligned_cols=113  Identities=20%  Similarity=0.121  Sum_probs=97.5

Q ss_pred             CCCcCCCCcCCCchHHHHHHhhCcHHH---HHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875          325 NDKDSNLNLYNIESITISRNRLGAQEV---RKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV  401 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~---v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~  401 (480)
                      .+.+++..+..+.+++|+|+..|+.++   +++|+++|++++....               ..|.||||+|+..++.+++
T Consensus        46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~---------------~~g~TpLh~A~~~g~~~iv  110 (166)
T PHA02743         46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAREL---------------GTGNTLLHIAASTKNYELA  110 (166)
T ss_pred             cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC---------------CCCCcHHHHHHHhCCHHHH
Confidence            334456667788999999999988654   7999999999987542               2499999999999999999


Q ss_pred             HHHHh-cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875          402 QSLLK-QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW  454 (480)
Q Consensus       402 ~~ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~  454 (480)
                      ++|+. .|++++.+|..|+||||+|+..++.+++++|+.+|++++.+  +..|.
T Consensus       111 ~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~--~~~~~  162 (166)
T PHA02743        111 EWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP--LSIGL  162 (166)
T ss_pred             HHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc--ccCCc
Confidence            99995 79999999999999999999999999999999999999944  66554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.70  E-value=2.1e-16  Score=153.60  Aligned_cols=129  Identities=11%  Similarity=-0.003  Sum_probs=109.7

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCH---HHHHHHHhcCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNL---TLVQSLLKQGHPV  411 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~---~~~~~ll~~g~~~  411 (480)
                      .....++.|+..|+.++|++|+++|+|++..+..              ..+.||||+|+.....   +++++++.+|+++
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~--------------g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI  403 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN--------------IINIMPLFPTLSIHESDVLSILKLCKPYIDDI  403 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC--------------CCChhHHHHHHHhccHhHHHHHHHHHhcCCcc
Confidence            3455678889999999999999999999876431              1256999998776654   4688899999999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH---c-------CCHHHHHHHHHcCCCC
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN---H-------GHTDIVQALVSAGAEV  479 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~---~-------~~~~~~~~Ll~~ga~~  479 (480)
                      |.+|..|+||||+|+..++.+++++|+++|++++  ..|..|.||||+|+.   .       ...++++.|+++|+++
T Consensus       404 N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN--~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        404 NKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN--ITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            9999999999999999999999999999999999  569999999999975   2       2356799999999876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.69  E-value=7e-15  Score=142.37  Aligned_cols=206  Identities=14%  Similarity=0.175  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ...++..+|.++...|++++|+..+++++.. .... .....++..+|.+|... |++++|+.+|+++++..      +.
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~~------~~  139 (389)
T PRK11788         68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKA-GLLDRAEELFLQLVDEG------DF  139 (389)
T ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCC------cc
Confidence            3456677777777777777777777766554 1111 11234566667774433 77777777777766541      11


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      ...++..++.++...|++++|++.+++.+...+.+.   ....+..+|.++...|++++|+.+|+++++..    +....
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~  215 (389)
T PRK11788        140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD----PQCVR  215 (389)
T ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC----cCCHH
Confidence            234566677777777777777777776665443321   23345667777777777777777777777652    22344


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ++..+|.++...|+ +++|+..+++++..     ++.....++..++.+|...|++++|..+++++.+
T Consensus       216 ~~~~la~~~~~~g~-~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        216 ASILLGDLALAQGD-YAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56667777777777 77777777776654     1222334556667777777777777777766654

>KOG1155|consensus

Probab=99.69  E-value=4.8e-15  Score=134.46  Aligned_cols=205  Identities=18%  Similarity=0.241  Sum_probs=169.1

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHh----------------hccCch--------------HHHHHHHHHHHHHHh
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLH----------------ARNFPE--------------AVKTLGEIGDLYELQ   88 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------~~~~~~--------------~~~~~~~lg~~y~~~   88 (480)
                      +-...|.+.+.+.+|++|+..|+...+.-                .++...              ...++.-||+.|...
T Consensus       264 i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr  343 (559)
T KOG1155|consen  264 IKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR  343 (559)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence            44567888999999999999999987651                001000              111223347775555


Q ss_pred             hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875           89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus        89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~  168 (480)
                       ++.++|+.||++|+++.+.      ...++..+|.-|..+++...|++.|++|+.+.|..  ..+++.||+.|.-++-.
T Consensus       344 -~eHEKAv~YFkRALkLNp~------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRAWYGLGQaYeim~Mh  414 (559)
T KOG1155|consen  344 -SEHEKAVMYFKRALKLNPK------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRAWYGLGQAYEIMKMH  414 (559)
T ss_pred             -HhHHHHHHHHHHHHhcCcc------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHHHhhhhHHHHHhcch
Confidence             9999999999999998543      46788899999999999999999999999888654  47899999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q psy875          169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFT  248 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  248 (480)
                      .=|+-||++|.+.    .|.-...|..||.+|.+.++ .++|+.+|..|+...      .....++..||++|.++++.+
T Consensus       415 ~YaLyYfqkA~~~----kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~------dte~~~l~~LakLye~l~d~~  483 (559)
T KOG1155|consen  415 FYALYYFQKALEL----KPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLG------DTEGSALVRLAKLYEELKDLN  483 (559)
T ss_pred             HHHHHHHHHHHhc----CCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHhHH
Confidence            9999999999999    44446789999999999999 999999999999873      336678999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy875          249 ELEQIKTELKSLEEK  263 (480)
Q Consensus       249 ~A~~~~~~~~~l~~~  263 (480)
                      +|..+++++.+....
T Consensus       484 eAa~~yek~v~~~~~  498 (559)
T KOG1155|consen  484 EAAQYYEKYVEVSEL  498 (559)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999886533

>KOG0512|consensus

Probab=99.69  E-value=1.9e-16  Score=123.97  Aligned_cols=132  Identities=20%  Similarity=0.198  Sum_probs=113.5

Q ss_pred             CccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHH
Q psy875          315 APRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAA  394 (480)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  394 (480)
                      -+....+++.....+|..+.++-++||-|+.+|+.+||+.|+..|++++.+.+                .|+||||.||.
T Consensus        76 l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~----------------~GWTPLhSAck  139 (228)
T KOG0512|consen   76 LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN----------------EGWTPLHSACK  139 (228)
T ss_pred             HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc----------------cCccchhhhhc
Confidence            35566777778888999999999999999999999999999999999998755                39999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCH-HHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          395 RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT-DIVQALVS-AGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       395 ~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                      .++.+++-.|+.+|+|+|......+||||.||..... ..+.+|+. .+.++-  ..+..+.||+.+|.+.+
T Consensus       140 WnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFDIARRTS  209 (228)
T ss_pred             ccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHHHHHHhh
Confidence            9999999999999999999998999999999977664 44555554 455555  55788999999999875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.69  E-value=1.4e-14  Score=140.25  Aligned_cols=208  Identities=15%  Similarity=0.142  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +...+.+|..+...|++++|+..|+++++.    .+....++..+|.+|... |++++|+..+++++....  .......
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~--~~~~~~~  107 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPD--LTREQRL  107 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCC--CCHHHHH
Confidence            445677789999999999999999999998    556677888999995555 999999999999886321  1223345


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc-HHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGE  195 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~  195 (480)
                      .++..+|.+|...|++++|+.+|++++...  +....++..++.++...|++++|++.+++.++..+.+. ......+..
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  185 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            678999999999999999999999998654  34457889999999999999999999999887644322 234556788


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +|.++...|+ +++|+.+|+++++..      +....++..++.++.+.|++++|.++++++...
T Consensus       186 la~~~~~~~~-~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  243 (389)
T PRK11788        186 LAQQALARGD-LDAARALLKKALAAD------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ  243 (389)
T ss_pred             HHHHHHhCCC-HHHHHHHHHHHHhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999 999999999998762      223457788999999999999999999998764

>PHA02741 hypothetical protein; Provisional

Probab=99.68  E-value=2.8e-16  Score=132.12  Aligned_cols=97  Identities=28%  Similarity=0.434  Sum_probs=86.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCccCCC
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLK------QGHPVKVQDSAGWLPLHEAANHGH----TDIVQALVSAGADPNDKVQDS  451 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~------~g~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~~  451 (480)
                      +..|.||||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|+.+|++++  .++.
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin--~~~~   95 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN--AQEM   95 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC--CCCc
Confidence            3459999999999999999998853      368899999999999999999999    589999999999999  4474


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Q psy875          452 -AGWLPLHEAANHGHTDIVQALVS-AGAEVS  480 (480)
Q Consensus       452 -~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~  480 (480)
                       .|.||||+|+..++.+++++|+. .|++++
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~  126 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLH  126 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence             89999999999999999999997 598874

>KOG0195|consensus

Probab=99.68  E-value=1.3e-16  Score=135.27  Aligned_cols=101  Identities=40%  Similarity=0.527  Sum_probs=94.8

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL  457 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl  457 (480)
                      .+..|..|.+|||+||..|+..+++.|+..|+.+|..+....||||+|+.+||.++|+.|++..+|+|  ..+..|.|||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvn--avnehgntpl  104 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN--AVNEHGNTPL  104 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccc--hhhccCCCch
Confidence            34456679999999999999999999999999999999999999999999999999999999999999  6699999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCC
Q psy875          458 HEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       458 ~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+||..|...+++-|+..||-++
T Consensus       105 hyacfwgydqiaedli~~ga~v~  127 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVN  127 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceee
Confidence            99999999999999999999764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.67  E-value=4.9e-16  Score=139.94  Aligned_cols=135  Identities=18%  Similarity=0.065  Sum_probs=111.2

Q ss_pred             chhhhccCCCcCCCC----cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875          318 SHFLIKRNDKDSNLN----LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA  393 (480)
Q Consensus       318 ~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~  393 (480)
                      +.-.+...|.++|..    +..+.+|+|+|+..|+.+++++|+++|+|++....               ..|.||||+|+
T Consensus        48 ivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~---------------~~g~TpLh~Aa  112 (300)
T PHA02884         48 IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE---------------EAKITPLYISV  112 (300)
T ss_pred             HHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC---------------CCCCCHHHHHH
Confidence            333344566677765    35789999999999999999999999999997432               23999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875          394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV  473 (480)
Q Consensus       394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  473 (480)
                      ..++.+++++|+..|++++.+|..|+||||+|+..++..++..+.  |...     +..+.+|++++   ++.+++++|+
T Consensus       113 ~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNEI-----SNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCcc-----cccccChhhhh---ccHHHHHHHH
Confidence            999999999999999999999999999999999999888875554  3222     45577898875   4689999999


Q ss_pred             HcCC
Q psy875          474 SAGA  477 (480)
Q Consensus       474 ~~ga  477 (480)
                      ++++
T Consensus       183 sh~v  186 (300)
T PHA02884        183 SHFI  186 (300)
T ss_pred             HHHH
Confidence            8876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.66  E-value=3.4e-16  Score=152.14  Aligned_cols=146  Identities=15%  Similarity=0.102  Sum_probs=118.0

Q ss_pred             ccCCccchhhhccCCCcCC-------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875          312 RKRAPRSHFLIKRNDKDSN-------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS  378 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~  378 (480)
                      .+|.||+|.........++             .+..+...+...|+.+|+.|+|++|+++|||+|...+           
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n-----------  103 (631)
T PHA02792         35 YDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKN-----------  103 (631)
T ss_pred             cCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccC-----------
Confidence            3566888877544432221             3334444666779999999999999999999997654           


Q ss_pred             ccCCCCCchHHHHHHH-cCCHHHHHHHHhcCCCCC------------------------------------CCCCCCChH
Q psy875          379 LLEKPRGETALHVAAA-RGNLTLVQSLLKQGHPVK------------------------------------VQDSAGWLP  421 (480)
Q Consensus       379 ~~~~~~g~~~l~~a~~-~~~~~~~~~ll~~g~~~~------------------------------------~~~~~g~t~  421 (480)
                           .|.+|+|+|+. .++.+++++|+++|+++.                                    ..|..|.||
T Consensus       104 -----~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~  178 (631)
T PHA02792        104 -----GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTV  178 (631)
T ss_pred             -----CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCch
Confidence                 37899999976 699999999999998743                                    233459999


Q ss_pred             HHHHHHcC-------CHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHc
Q psy875          422 LHEAANHG-------HTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG--HTDIVQALVSA  475 (480)
Q Consensus       422 l~~a~~~~-------~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~--~~~~~~~Ll~~  475 (480)
                      ||+++..+       +.++++.|+.+|++++  ..|..|.||||+|+...  ..+++++|+..
T Consensus       179 L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~--~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        179 LYYYIITRSQDGYATSLDVINYLISHEKEMR--YYTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             HHHHHhhCCcccccCCHHHHHHHHhCCCCcC--ccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence            99999999       8999999999999999  45889999999999999  78999999873

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.66  E-value=1.8e-16  Score=165.08  Aligned_cols=141  Identities=18%  Similarity=0.106  Sum_probs=112.1

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.||+|.|+..|+.++|++|+++|++++..............  .....|.||||.|+..|+.+++++|+++|+|+|.
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~--~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV--DSFYHGESPLNAAACLGSPSIVALLSEDPADILT  203 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC--CcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence            45789999999999999999999999999965432111111110  0112489999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcC---------CHHHHHHHHHcCCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875          414 QDSAGWLPLHEAANHG---------HTDIVQALVSAGADPND-----KVQDSAGWLPLHEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  476 (480)
                      .|..|+||||+|+..+         ...+.+++++.+..+..     .+.|.+|.||||+|+..|+.+++++|++.+
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            9999999999999987         23466667766555421     155889999999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.66  E-value=1.2e-14  Score=133.88  Aligned_cols=205  Identities=12%  Similarity=0.048  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ...+..++.+|.+|...|++++|+..|++++++    .|....+|+.+|.+| ...|++++|+..|++|+++.+..    
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~Al~l~P~~----  131 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYL-TQAGNFDAAYEAFDSVLELDPTY----  131 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC----
Confidence            455788999999999999999999999999999    667788999999994 55599999999999999885432    


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                        ..++.++|.++...|++++|+..|++++...+.......+   ..+....+++++|+..+.+++.....  +    .+
T Consensus       132 --~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~--~----~~  200 (296)
T PRK11189        132 --NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW---LYLAESKLDPKQAKENLKQRYEKLDK--E----QW  200 (296)
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHccCCHHHHHHHHHHHHhhCCc--c----cc
Confidence              5678999999999999999999999999887764422222   23345678999999999887644211  1    11


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQN-KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                       ..+.++...|+ +.++ ..+..+....+.. ...+....++..+|.++.++|++++|..+++++.++.
T Consensus       201 -~~~~~~~~lg~-~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        201 -GWNIVEFYLGK-ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             -HHHHHHHHccC-CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence             13555666777 6544 2333333211110 1123456789999999999999999999999988654

>KOG1173|consensus

Probab=99.65  E-value=3.6e-15  Score=138.60  Aligned_cols=212  Identities=18%  Similarity=0.142  Sum_probs=181.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      .++++..+..|+..|..|...|.+.+|.++|.||-.+    .+..+.+|...|..|..+ +..++|+..|..|-++.+..
T Consensus       305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l----D~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL----DPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc----CccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhccCC
Confidence            3455667778999999999999999999999999998    777888999999996666 99999999999999998765


Q ss_pred             CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC---c
Q psy875          110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN---F  186 (480)
Q Consensus       110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~---~  186 (480)
                      .-+      +.-+|.-|..+++++.|.++|.+++.+.|...  .++..+|.+.+..+.|.+|..+|++++...+..   .
T Consensus       380 hlP------~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~  451 (611)
T KOG1173|consen  380 HLP------SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK  451 (611)
T ss_pred             cch------HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence            433      23578889999999999999999999987655  668899999999999999999999999665542   2


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      +.-...+.+||-++.++++ |++|+.++++++.+      .+.-..++..+|-+|..+|+++.|..++-++.-+.
T Consensus       452 ~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL~l------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~  519 (611)
T KOG1173|consen  452 IFWEPTLNNLGHAYRKLNK-YEEAIDYYQKALLL------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK  519 (611)
T ss_pred             cchhHHHHhHHHHHHHHhh-HHHHHHHHHHHHHc------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence            2345678999999999999 99999999999988      44456778899999999999999999999887653

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=4.4e-15  Score=118.86  Aligned_cols=122  Identities=39%  Similarity=0.527  Sum_probs=110.3

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.++++.|+..++.+++++|++.|++.+..                +..|.+|+|.|+..++.++++.|+..|++++.
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~----------------~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~   68 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAK----------------DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA   68 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcc----------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            45668888899999999999999999887443                33599999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV  473 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  473 (480)
                      .+..|.||+|+|+..++.+++++|+.+|.+++  ..+..|.||+++|...++.+++++|+
T Consensus        69 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          69 RDKDGNTPLHLAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999998888  45889999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.64  E-value=1.2e-15  Score=106.19  Aligned_cols=102  Identities=25%  Similarity=0.292  Sum_probs=91.7

Q ss_pred             HHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy875          339 ITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG  418 (480)
Q Consensus       339 ~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g  418 (480)
                      -..|+..+|.++-|+-.+..|.++|....                 |++|||+|+-.|+.+++++|+..|++++.+|..|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~g-----------------gR~plhyAAD~GQl~ilefli~iGA~i~~kDKyg   67 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYG-----------------GRTPLHYAADYGQLSILEFLISIGANIQDKDKYG   67 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHhC-----------------CcccchHhhhcchHHHHHHHHHhccccCCccccC
Confidence            46789999999999999999988887764                 9999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       419 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                      .|||-.|+..||.+||++|+..|++-..+  ..+|.+.+..
T Consensus        68 ITPLLsAvwEGH~~cVklLL~~GAdrt~~--~PdG~~~~ea  106 (117)
T KOG4214|consen   68 ITPLLSAVWEGHRDCVKLLLQNGADRTIH--APDGTALIEA  106 (117)
T ss_pred             CcHHHHHHHHhhHHHHHHHHHcCccccee--CCCchhHHhh
Confidence            99999999999999999999999999855  4457666543

>KOG0547|consensus

Probab=99.64  E-value=2.3e-14  Score=130.88  Aligned_cols=207  Identities=18%  Similarity=0.186  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      ..|..+|.+|....+-++..+.|.+|..+    .+....+|+..|++++. +++|++|+.-|+||+.+.+      ..+.
T Consensus       361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~fl-L~q~e~A~aDF~Kai~L~p------e~~~  429 (606)
T KOG0547|consen  361 SLYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFL-LQQYEEAIADFQKAISLDP------ENAY  429 (606)
T ss_pred             hHHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHH-HHHHHHHHHHHHHHhhcCh------hhhH
Confidence            34888999999999999999999999999    66667788899999544 4999999999999998843      4477


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH--HHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE--AVKTLGE  195 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~  195 (480)
                      .|..++-+.+++++++++...|+.+....  |....+|...|.++.++++|++|+++|++++++-+..+..  .+..+.+
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~  507 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH  507 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence            88899999999999999999999988665  4556788899999999999999999999999985542111  1222333


Q ss_pred             HHHHHHHh-CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875          196 IGDLYELQ-EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL  264 (480)
Q Consensus       196 l~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~  264 (480)
                      -|.+..+- ++ +..|+..+++|+++      ++.-..++..||.+-.++|+.++|+++++++..+..+.
T Consensus       508 Ka~l~~qwk~d-~~~a~~Ll~KA~e~------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  508 KALLVLQWKED-INQAENLLRKAIEL------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             hhHhhhchhhh-HHHHHHHHHHHHcc------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            33333332 45 99999999999988      66677889999999999999999999999999988764

>KOG3676|consensus

Probab=99.64  E-value=1.3e-15  Score=147.61  Aligned_cols=165  Identities=22%  Similarity=0.185  Sum_probs=135.5

Q ss_pred             hccCCccchhhhccCCCcCC-------------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc
Q psy875          311 NRKRAPRSHFLIKRNDKDSN-------------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT  371 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~  371 (480)
                      -.-|+|.||.++.......|                   ....-++++||.|+.+.+.++|++|++.|||++.+..-...
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF  219 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence            34589999999886444332                   23567899999999999999999999999999987543222


Q ss_pred             cc-CCCccc-cCC-----CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          372 LE-TPTTSL-LEK-----PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP  444 (480)
Q Consensus       372 ~~-~~~~~~-~~~-----~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  444 (480)
                      .. +...++ ..|     --|+.||-+||.-++.+++++|+++|+|++.+|..|+|.||..+..-..++-++++.+|++.
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~  299 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA  299 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            21 221220 000     01899999999999999999999999999999999999999999998899999999999993


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875          445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSA  475 (480)
Q Consensus       445 ~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  475 (480)
                      ...++|+.|-|||..|++.|..+|.+.+++.
T Consensus       300 l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  300 LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            3337799999999999999999999999987

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.62  E-value=7.2e-14  Score=142.53  Aligned_cols=64  Identities=11%  Similarity=-0.043  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL  103 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl  103 (480)
                      .-..++..+|.++...|++++|+..|++++++    .+....++..+|.+ +...|++++|+..+++++
T Consensus       108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~-l~~~g~~~eA~~~~~~~~  171 (656)
T PRK15174        108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLA----FSGNSQIFALHLRT-LVLMDKELQAISLARTQA  171 (656)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHH-HHHCCChHHHHHHHHHHH
Confidence            33556777777777777777777777777776    34444445555555 333355665555555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.62  E-value=6.9e-14  Score=146.18  Aligned_cols=198  Identities=12%  Similarity=0.026  Sum_probs=159.8

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      ....+|.++...|++++|+..|+++...    .+. ...+..+|.+ ....|++++|+.++++++...+.   .   ...
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~----~p~-~~a~~~la~a-ll~~Gd~~eA~~~l~qAL~l~P~---~---~~l  578 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKISLH----DMS-NEDLLAAANT-AQAAGNGAARDRWLQQAEQRGLG---D---NAL  578 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCC-cHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCc---c---HHH
Confidence            3566677778899999999999997654    222 1235677888 45559999999999999876421   1   233


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +..++......|++++|+..|++++...|.   ...+.++|.++.++|++++|+.+|++++.+    .|....++.++|.
T Consensus       579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l----~Pd~~~a~~nLG~  651 (987)
T PRK09782        579 YWWLHAQRYIPGQPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAALEL----EPNNSNYQAALGY  651 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence            445666666779999999999999987763   578899999999999999999999999998    4555678999999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      ++...|+ +++|+..|++++++      .|....++.++|.++..+|++++|+.+++++.++..
T Consensus       652 aL~~~G~-~eeAi~~l~~AL~l------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        652 ALWDSGD-IAQSREMLERAHKG------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999999 99999999999887      445567888999999999999999999999987663

>KOG1173|consensus

Probab=99.61  E-value=3.2e-14  Score=132.38  Aligned_cols=201  Identities=16%  Similarity=0.216  Sum_probs=166.7

Q ss_pred             hhHHHhhccchhhhhhhHHHH-hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875            3 FKIALSRGIGLSDSLDSACTE-LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI   81 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l   81 (480)
                      +-.|+..|+. |..++....+ -++++.....+..+.+|...|..+...|..++|+.+|..|-+++    +.-..-...+
T Consensus       312 a~sW~aVg~Y-Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~----~G~hlP~LYl  386 (611)
T KOG1173|consen  312 ALSWFAVGCY-YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM----PGCHLPSLYL  386 (611)
T ss_pred             CcchhhHHHH-HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc----cCCcchHHHH
Confidence            3458888888 7777764433 56666777778889999999999999999999999999999994    3322333566


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----ccHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----KDLASCYI  156 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~~  156 (480)
                      |.- +...++++.|.++|.+|+.+++..      ..++..+|.+.+..+.|.+|..+|++++...+.     +.+.....
T Consensus       387 gme-y~~t~n~kLAe~Ff~~A~ai~P~D------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  387 GME-YMRTNNLKLAEKFFKQALAIAPSD------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             HHH-HHHhccHHHHHHHHHHHHhcCCCc------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            777 555599999999999999997643      346789999999999999999999988832221     34567899


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      |||.+|.+++.|++|+.+|++++.+    .+..+.++..+|.+|..+|+ ++.|+++|.+|+.+
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l----~~k~~~~~asig~iy~llgn-ld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLL----SPKDASTHASIGYIYHLLGN-LDKAIDHFHKALAL  518 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHc----CCCchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhc
Confidence            9999999999999999999999999    45557889999999999999 99999999999987

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.60  E-value=1.4e-13  Score=149.99  Aligned_cols=205  Identities=18%  Similarity=0.181  Sum_probs=164.0

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH-------
Q psy875           42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL-------  114 (480)
Q Consensus        42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~-------  114 (480)
                      .+|..+...|++++|+..|+++++.    .+....++..+|.+|... |++++|+.+|+++++..+.......       
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~----~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~  348 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRA----NPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWESLLKV  348 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence            4588999999999999999999998    566678889999995555 9999999999999988765433211       


Q ss_pred             -HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH----
Q psy875          115 -IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA----  189 (480)
Q Consensus       115 -~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----  189 (480)
                       .......+|.++...|++++|+.+|++++...+.  ...++..+|.+|..+|++++|+.+|++++++.+.+....    
T Consensus       349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~  426 (1157)
T PRK11447        349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA  426 (1157)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence             1123446789999999999999999999987754  346788999999999999999999999998744422110    


Q ss_pred             ----------------------------------HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875          190 ----------------------------------VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR  235 (480)
Q Consensus       190 ----------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  235 (480)
                                                        ...+..+|.++...|+ +++|+..|++++++      .+....++.
T Consensus       427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~-~~eA~~~~~~Al~~------~P~~~~~~~  499 (1157)
T PRK11447        427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK-WAQAAELQRQRLAL------DPGSVWLTY  499 (1157)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHH
Confidence                                              1123456777888899 99999999999877      233345778


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          236 SMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       236 ~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .++.+|..+|++++|...++++.++
T Consensus       500 ~LA~~~~~~G~~~~A~~~l~~al~~  524 (1157)
T PRK11447        500 RLAQDLRQAGQRSQADALMRRLAQQ  524 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            9999999999999999999998764

>KOG4214|consensus

Probab=99.60  E-value=3.4e-15  Score=104.00  Aligned_cols=90  Identities=32%  Similarity=0.468  Sum_probs=83.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875          387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT  466 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~  466 (480)
                      --+.|++.+|.++-|+..+..|.++|.. ..|++|||+|+-.|..+++++|+..|++++.  .|+.|.|||-.|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~--kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQD--KDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCC--ccccCCcHHHHHHHHhhH
Confidence            4468999999999999999999888765 4899999999999999999999999999995  499999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q psy875          467 DIVQALVSAGAEV  479 (480)
Q Consensus       467 ~~~~~Ll~~ga~~  479 (480)
                      +||++|+++||+-
T Consensus        81 ~cVklLL~~GAdr   93 (117)
T KOG4214|consen   81 DCVKLLLQNGADR   93 (117)
T ss_pred             HHHHHHHHcCccc
Confidence            9999999999985

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.60  E-value=2.9e-13  Score=138.09  Aligned_cols=207  Identities=11%  Similarity=0.015  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCch-------------------------------HHHHHHHHHHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE-------------------------------AVKTLGEIGDL   84 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~lg~~   84 (480)
                      ...++..+|.++...|++++|+..+.+++.. ..+.+.                               .......++.+
T Consensus       143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~  221 (656)
T PRK15174        143 NSQIFALHLRTLVLMDKELQAISLARTQAQE-VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT  221 (656)
T ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            3445666677777777777777766665544 111111                               01111233445


Q ss_pred             HHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHH----HHHHHHHHhcccccccHHHHHHHHHH
Q psy875           85 YELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDS----ACSELHTVLSSDLCKDLASCYISLAQ  160 (480)
Q Consensus        85 y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~~~la~  160 (480)
                       +...|++++|+..+++++...+.      ...++.++|.+|...|++++    |+..|++++...|  ....++.++|.
T Consensus       222 -l~~~g~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P--~~~~a~~~lg~  292 (656)
T PRK15174        222 -LCAVGKYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS--DNVRIVTLYAD  292 (656)
T ss_pred             -HHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Confidence             33347777777777777665321      24566789999999999985    7999999987764  45578889999


Q ss_pred             HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875          161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL  240 (480)
Q Consensus       161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  240 (480)
                      ++..+|++++|+.++++++++    .|....++..+|.++...|+ +++|+..|++++..      .+........++.+
T Consensus       293 ~l~~~g~~~eA~~~l~~al~l----~P~~~~a~~~La~~l~~~G~-~~eA~~~l~~al~~------~P~~~~~~~~~a~a  361 (656)
T PRK15174        293 ALIRTGQNEKAIPLLQQSLAT----HPDLPYVRAMYARALRQVGQ-YTAASDEFVQLARE------KGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CccchHHHHHHHHH
Confidence            999999999999999999987    34445678889999999999 99999999888765      22223445567888


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHh
Q psy875          241 YKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       241 ~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      +...|++++|...++++.+....
T Consensus       362 l~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        362 LLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhChh
Confidence            99999999999999998776433

>KOG1941|consensus

Probab=99.59  E-value=3.3e-13  Score=118.99  Aligned_cols=244  Identities=16%  Similarity=0.131  Sum_probs=207.0

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc--hHHHHHHHHHHHHHHhhccHHHHHH
Q psy875           20 ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP--EAVKTLGEIGDLYELQEKSFEIVQS   97 (480)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~lg~~y~~~~~~~~~A~~   97 (480)
                      ..+.+..+...++..-.-.++.+++..+...-++.+++.+..-.+.+ .+..+  .-......+|.. +.-++.|+++++
T Consensus        66 a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~A-hlgls~fq~~Le  143 (518)
T KOG1941|consen   66 AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNA-HLGLSVFQKALE  143 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHH-hhhHHHHHHHHH
Confidence            44446666666666777889999999999999999999999888887 33222  122445568888 666699999999


Q ss_pred             HHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc--------cHHHHHHHHHHHHHhhccHH
Q psy875           98 THEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK--------DLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus        98 ~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~--------~~~~~~~~la~~y~~~~~~~  169 (480)
                      +|++|++++...+|+.....++..||.+|..+.++++|+.|..++..+...-        ....+++.++..+..+|+.-
T Consensus       144 sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg  223 (518)
T KOG1941|consen  144 SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG  223 (518)
T ss_pred             HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999988888899999999999999999999999888655431        12567788999999999999


Q ss_pred             HHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875          170 LAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       170 ~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  247 (480)
                      .|.++.+++.++.-.  +.+..+.+...+|++|...|+ .+.|..-|++|+......++...+..++...+++.....-.
T Consensus       224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd-~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~  302 (518)
T KOG1941|consen  224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD-LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ  302 (518)
T ss_pred             cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc-HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888443  788889999999999999999 99999999999999999999999999999999998877666


Q ss_pred             HH-----HHHHHHHHHHHHHhhcc
Q psy875          248 TE-----LEQIKTELKSLEEKLDL  266 (480)
Q Consensus       248 ~~-----A~~~~~~~~~l~~~~~~  266 (480)
                      .+     |+++-++.++++.+|+.
T Consensus       303 ~k~~~Crale~n~r~levA~~IG~  326 (518)
T KOG1941|consen  303 NKICNCRALEFNTRLLEVASSIGA  326 (518)
T ss_pred             hcccccchhHHHHHHHHHHHHhhh
Confidence            66     99999999999988876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.59  E-value=1.4e-14  Score=151.01  Aligned_cols=155  Identities=21%  Similarity=0.136  Sum_probs=117.4

Q ss_pred             hhHhhhccCCccchhhhccC--CCcCCCCcCCCchHHH-HHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCC
Q psy875          306 QDKRTNRKRAPRSHFLIKRN--DKDSNLNLYNIESITI-SRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK  382 (480)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~  382 (480)
                      .-.....+|+......+...  +.++|..+..+.++++ .|+.+++.+++++|++.|+.                    +
T Consensus        20 ~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~--------------------~   79 (743)
T TIGR00870        20 AFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCR--------------------G   79 (743)
T ss_pred             HHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCC--------------------C
Confidence            33445566666555544444  7778877888899999 99999999999999999871                    1


Q ss_pred             CCCchHHHHHHHcC---CHHHHHHHHhcCCC------CCC----CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccC
Q psy875          383 PRGETALHVAAARG---NLTLVQSLLKQGHP------VKV----QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ  449 (480)
Q Consensus       383 ~~g~~~l~~a~~~~---~~~~~~~ll~~g~~------~~~----~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  449 (480)
                      ..|.||||.|+..+   ...++..+...+.+      ++.    ....|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        80 ~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~  159 (743)
T TIGR00870        80 AVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC  159 (743)
T ss_pred             CcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC
Confidence            23999999998732   22344444444422      111    234699999999999999999999999999984321


Q ss_pred             ------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          450 ------------DSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       450 ------------~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                                  ...|.||||.|+..|+++++++|+++|+|++
T Consensus       160 ~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin  202 (743)
T TIGR00870       160 GDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL  202 (743)
T ss_pred             CchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence                        1258999999999999999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.59  E-value=1.8e-15  Score=139.57  Aligned_cols=152  Identities=28%  Similarity=0.308  Sum_probs=127.4

Q ss_pred             hhhccCCccchhhhc-----------cCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-----
Q psy875          309 RTNRKRAPRSHFLIK-----------RNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-----  372 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-----  372 (480)
                      ..+..|.|++|.++.           ..+.+||..++.+.+|+|.|+..|+..++++|+.+|+++...+.-+.-.     
T Consensus        68 ~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e  147 (527)
T KOG0505|consen   68 LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAE  147 (527)
T ss_pred             ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccccc
Confidence            345557788887654           4667889999999999999999999999999999999876543221100     


Q ss_pred             --------------------------------------cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          373 --------------------------------------ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       373 --------------------------------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                                                            .......+.++.|.|.||+|+..|..+++++|++.|.+++.+
T Consensus       148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~  227 (527)
T KOG0505|consen  148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIK  227 (527)
T ss_pred             CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccc
Confidence                                                  334444445667999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN  462 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~  462 (480)
                      |..||||||.|+.+|+.+++++|+++|++++  .....|.||+.+|..
T Consensus       228 D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d--~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  228 DYDGWTPLHAAAHWGQEDACELLVEHGADMD--AKTKMGETPLDVADE  273 (527)
T ss_pred             cccCCCcccHHHHhhhHhHHHHHHHhhcccc--hhhhcCCCCccchhh
Confidence            9999999999999999999999999999999  458899999998864

>PRK12370 invasion protein regulator; Provisional

Probab=99.59  E-value=2.3e-13  Score=136.63  Aligned_cols=197  Identities=8%  Similarity=-0.013  Sum_probs=155.8

Q ss_pred             HHHHHHHHHh---ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHhhh
Q psy875           39 CYISLAQTYK---DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--------EKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        39 ~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~--------~~~~~~A~~~~~kAl~~~~  107 (480)
                      .++..|..+.   ..+.+++|+.+|++|+++    .|....++..+|.+|...        .+++++|+..+++|+++.+
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP  335 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH  335 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence            3555565443   346789999999999999    666677788888875422        1448999999999998854


Q ss_pred             cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP  187 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~  187 (480)
                      ..      ..++..+|.++...|++++|+.+|++++...|  +.+.+++.+|.++...|++++|+.++++++++.+.+  
T Consensus       336 ~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--  405 (553)
T PRK12370        336 NN------PQALGLLGLINTIHSEYIVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--  405 (553)
T ss_pred             CC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--
Confidence            32      56788999999999999999999999997775  445778999999999999999999999999994432  


Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                        ...+..++.+++..|+ +++|+..+++++...     ++.....+..++.++..+|++++|...++++
T Consensus       406 --~~~~~~~~~~~~~~g~-~eeA~~~~~~~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        406 --AAAGITKLWITYYHTG-IDDAIRLGDELRSQH-----LQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             --hhhHHHHHHHHHhccC-HHHHHHHHHHHHHhc-----cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence              3334456667788999 999999999987552     2333456788999999999999999998764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.57  E-value=1.4e-13  Score=143.96  Aligned_cols=197  Identities=9%  Similarity=0.046  Sum_probs=163.7

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      .++.+|.++...|++++|+.+|+++++.    .+.....+..++.. ....|++++|+..+++|+.+.+      . ..+
T Consensus       544 a~~~la~all~~Gd~~eA~~~l~qAL~l----~P~~~~l~~~La~~-l~~~Gr~~eAl~~~~~AL~l~P------~-~~a  611 (987)
T PRK09782        544 DLLAAANTAQAAGNGAARDRWLQQAEQR----GLGDNALYWWLHAQ-RYIPGQPELALNDLTRSLNIAP------S-ANA  611 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCccHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCC------C-HHH
Confidence            3678899999999999999999999988    34444444555555 3344999999999999998754      1 457


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +.++|.++..+|++++|+..|++++...|+  ...++.++|.++...|++++|+.+|++++++    .|..+.++.++|.
T Consensus       612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l----~P~~~~a~~nLA~  685 (987)
T PRK09782        612 YVARATIYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDIAQSREMLERAHKG----LPDDPALIRQLAY  685 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence            889999999999999999999999987754  4478999999999999999999999999998    4555788999999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ++..+|+ +++|+.+|++++++      .+....+....+.+.....+++.|.+-+.+...+
T Consensus       686 al~~lGd-~~eA~~~l~~Al~l------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        686 VNQRLDD-MAATQHYARLVIDD------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             HHHHCCC-HHHHHHHHHHHHhc------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999 99999999999987      3455566667777888888888887777766554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.57  E-value=1.9e-13  Score=148.92  Aligned_cols=210  Identities=9%  Similarity=0.046  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch----
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK----  113 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~----  113 (480)
                      ..+..+|..+...|++++|+++|++++++    .|....++..+|.+|... |++++|+..+++++...+...+..    
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~-G~~~~A~~~l~~al~~~P~~~~~~~a~a  536 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQA-GQRSQADALMRRLAQQKPNDPEQVYAYG  536 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34567888899999999999999999998    555566778899995444 999999999998886543221100    


Q ss_pred             ----------------------------------------------------------------HHHHHHHHHHHHHHhc
Q psy875          114 ----------------------------------------------------------------LIRTVMRSIKKLYKKH  129 (480)
Q Consensus       114 ----------------------------------------------------------------~~~~~~~~l~~~y~~~  129 (480)
                                                                                      ....++..+|.+|...
T Consensus       537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~  616 (1157)
T PRK11447        537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR  616 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence                                                                            0012445788999999


Q ss_pred             CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHH
Q psy875          130 DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL  209 (480)
Q Consensus       130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (480)
                      |++++|+.+|++++...|.  ...++..+|.+|...|++++|+++++++++.    .+.....+..+|.++...|+ +++
T Consensus       617 g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~----~p~~~~~~~~la~~~~~~g~-~~e  689 (1157)
T PRK11447        617 GDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLAAARAQLAKLPAT----ANDSLNTQRRVALAWAALGD-TAA  689 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHhCCC-HHH
Confidence            9999999999999977654  4578899999999999999999999988776    33345667889999999999 999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       210 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      |..+|++++..............++..++.++...|++++|..+|+++..
T Consensus       690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999876543333223456777889999999999999999999974

>KOG0507|consensus

Probab=99.57  E-value=4e-15  Score=142.34  Aligned_cols=152  Identities=30%  Similarity=0.320  Sum_probs=130.9

Q ss_pred             hhhccCCccchhhhccCCCcC-----------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875          309 RTNRKRAPRSHFLIKRNDKDS-----------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT  377 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~  377 (480)
                      -...+|.+|+|++.+.+..++           |.....+.+++|.++..||.++|.+|+.+|+|+-..++          
T Consensus        77 l~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn----------  146 (854)
T KOG0507|consen   77 LCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNN----------  146 (854)
T ss_pred             hhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCc----------
Confidence            344799999999999887754           66778889999999999999999999999999977644          


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC--------CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccC
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK--------VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ  449 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~--------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  449 (480)
                            ++.|+|-.|+..|..++++.|+....++-        .++..+.+|||.|+.+||.+|++.|++.|.++|..  
T Consensus       147 ------s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~--  218 (854)
T KOG0507|consen  147 ------SKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT--  218 (854)
T ss_pred             ------ccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc--
Confidence                  59999999999999999999998754432        22345778999999999999999999999999943  


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          450 DSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       450 ~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      .. ..|+||.|+..|..+++.+|++.|++.
T Consensus       219 t~-~gtalheaalcgk~evvr~ll~~gin~  247 (854)
T KOG0507|consen  219 TE-DGTALHEAALCGKAEVVRFLLEIGINT  247 (854)
T ss_pred             cc-cchhhhhHhhcCcchhhhHHHhhcccc
Confidence            44 459999999999999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=99.57  E-value=5.3e-13  Score=133.99  Aligned_cols=202  Identities=13%  Similarity=0.040  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875           34 KDLASCYISLAQTYKD---------NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALD  104 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~  104 (480)
                      +..+.++..+|.+|..         .+++++|+..+++++++    .|....++..+|.++... |++++|+.+|++|++
T Consensus       292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~  366 (553)
T PRK12370        292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIH-SEYIVGSLLFKQANL  366 (553)
T ss_pred             CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH
Confidence            3445677777776653         35589999999999999    677777888999995554 999999999999999


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          105 LARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      +.+..      ..++..+|.++...|++++|+..+++++...|...  ..+..++.+++..|++++|+..++++++..  
T Consensus       367 l~P~~------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--  436 (553)
T PRK12370        367 LSPIS------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--AAGITKLWITYYHTGIDDAIRLGDELRSQH--  436 (553)
T ss_pred             hCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHhccCHHHHHHHHHHHHHhc--
Confidence            85432      45788999999999999999999999998887643  334456667778999999999999988762  


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                       ++..+..+..+|.++..+|+ +++|...+.+....      .+........++.+|...|+  +|...+++..+.
T Consensus       437 -~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~  502 (553)
T PRK12370        437 -LQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQ------EITGLIAVNLLYAEYCQNSE--RALPTIREFLES  502 (553)
T ss_pred             -cccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhc------cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence             23445678889999999999 99999999876433      33444556678888888884  777777665543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.56  E-value=3.1e-13  Score=145.33  Aligned_cols=196  Identities=19%  Similarity=0.171  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ...+..+|.++...|++++|++.|++++.. .++.    ..+..++.+| ...|++++|+..+++++...+.      ..
T Consensus       703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~l~~~~-~~~g~~~~A~~~~~~~l~~~~~------~~  770 (899)
T TIGR02917       703 ALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSS----QNAIKLHRAL-LASGNTAEAVKTLEAWLKTHPN------DA  770 (899)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCc----hHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC------CH
Confidence            345667778888888888888888888776 2222    4456677774 4448888888888887765332      14


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      .++..+|.+|...|++++|+.+|++++...+  ....++.++|.++...|+ .+|+.++++++++.+++    ...+..+
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~----~~~~~~~  843 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAP--DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI----PAILDTL  843 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC----cHHHHHH
Confidence            5677888888888888888888888886654  345677888888888888 77888888888874333    3456788


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      |.++...|+ +++|..+|+++++..      +....++..++.++.+.|++++|.+.++++.
T Consensus       844 ~~~~~~~g~-~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       844 GWLLVEKGE-ADRALPLLRKAVNIA------PEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            888888999 999999999888763      2245677788889999999999998888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.56  E-value=2.5e-13  Score=112.93  Aligned_cols=169  Identities=17%  Similarity=0.132  Sum_probs=144.6

Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH
Q psy875           73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA  152 (480)
Q Consensus        73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~  152 (480)
                      ..+.+...+|.-|... |++..|..-+++|+++.+.      ...++..++.+|...|+.+.|-+.|++++...++  .+
T Consensus        33 ~aa~arlqLal~YL~~-gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--~G  103 (250)
T COG3063          33 EAAKARLQLALGYLQQ-GDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--NG  103 (250)
T ss_pred             HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--cc
Confidence            3456778889996566 9999999999999998543      3567889999999999999999999999987754  45


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT  232 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  232 (480)
                      .+++|.|.-++.+|+|++|..+|.+|+...  .-+..+.++.|+|.+..+.|+ ++.|.++|++++++      .+....
T Consensus       104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P--~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~------dp~~~~  174 (250)
T COG3063         104 DVLNNYGAFLCAQGRPEEAMQQFERALADP--AYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALEL------DPQFPP  174 (250)
T ss_pred             chhhhhhHHHHhCCChHHHHHHHHHHHhCC--CCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHh------CcCCCh
Confidence            889999999999999999999999998752  234557889999999999999 99999999999988      344445


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          233 VMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       233 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ....++..+.+.|++-.|..+++.+..
T Consensus       175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~  201 (250)
T COG3063         175 ALLELARLHYKAGDYAPARLYLERYQQ  201 (250)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHh
Confidence            667889999999999999999987754

>KOG1129|consensus

Probab=99.55  E-value=1.5e-13  Score=119.48  Aligned_cols=230  Identities=16%  Similarity=0.113  Sum_probs=182.5

Q ss_pred             hhHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Q psy875            3 FKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG   82 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg   82 (480)
                      ++-|+.+|+. -++-.+..+.+...       .....+..|+.+|.+..+...|+..|.+.++.    .|.....+..++
T Consensus       230 gkCylrLgm~-r~AekqlqssL~q~-------~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~A  297 (478)
T KOG1129|consen  230 GKCYLRLGMP-RRAEKQLQSSLTQF-------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQA  297 (478)
T ss_pred             HHHHHHhcCh-hhhHHHHHHHhhcC-------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhH
Confidence            4566777776 44444433333211       23557888899999999999999999998887    666666778889


Q ss_pred             HHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHH
Q psy875           83 DLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTY  162 (480)
Q Consensus        83 ~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y  162 (480)
                      .+ +..++++++|.++|+.+++.-...      ..+...+|.-|+.-++.+-|+.||++.++..-.  ....+.|+|.++
T Consensus       298 Ri-~eam~~~~~a~~lYk~vlk~~~~n------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC  368 (478)
T KOG1129|consen  298 RI-HEAMEQQEDALQLYKLVLKLHPIN------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCC  368 (478)
T ss_pred             HH-HHHHHhHHHHHHHHHHHHhcCCcc------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHH
Confidence            99 555599999999999998764322      334456788899999999999999998865432  236789999999


Q ss_pred             HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875          163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK  242 (480)
Q Consensus       163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  242 (480)
                      +..++++-++..|++|+....+ +...+.+|+|+|.+....|+ +..|..+|+-++.-      ......++.+|+.+-.
T Consensus       369 ~yaqQ~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~------d~~h~ealnNLavL~~  440 (478)
T KOG1129|consen  369 LYAQQIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTS------DAQHGEALNNLAVLAA  440 (478)
T ss_pred             HhhcchhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccc-hHHHHHHHHHHhcc------CcchHHHHHhHHHHHh
Confidence            9999999999999999988554 45678999999999999999 99999999888754      5667889999999999


Q ss_pred             HcCChHHHHHHHHHHHHHH
Q psy875          243 KHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       243 ~~g~~~~A~~~~~~~~~l~  261 (480)
                      +.|+.++|..++..+..+.
T Consensus       441 r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  441 RSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             hcCchHHHHHHHHHhhhhC
Confidence            9999999999998876643

>KOG0507|consensus

Probab=99.55  E-value=1.1e-14  Score=139.50  Aligned_cols=142  Identities=30%  Similarity=0.350  Sum_probs=126.6

Q ss_pred             CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875          314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA  393 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~  393 (480)
                      ++.++...  .....+|..+.++.+++|.|+.+|+.+++++|++..+-++..+.                +|.+|||+|+
T Consensus        29 r~~~l~~~--trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~----------------kg~~plhlaa   90 (854)
T KOG0507|consen   29 RSGLLFFT--TRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT----------------KGILPLHLAA   90 (854)
T ss_pred             CCCCCCCC--CCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc----------------cCcceEEehh
Confidence            44454443  33445677788999999999999999999999999987776542                4999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875          394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV  473 (480)
Q Consensus       394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  473 (480)
                      +.|+.++++.++.++..+|..+..|.||||.|+..||.+++.+|+.+|+++.  ++|..+.|+|..|++.|..++++.|+
T Consensus        91 w~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~--i~nns~~t~ldlA~qfgr~~Vvq~ll  168 (854)
T KOG0507|consen   91 WNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF--IRNNSKETVLDLASRFGRAEVVQMLL  168 (854)
T ss_pred             hcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc--ccCcccccHHHHHHHhhhhHHHHHHh
Confidence            9999999999999998899999999999999999999999999999999999  66999999999999999999999998


Q ss_pred             Hc
Q psy875          474 SA  475 (480)
Q Consensus       474 ~~  475 (480)
                      +.
T Consensus       169 ~~  170 (854)
T KOG0507|consen  169 QK  170 (854)
T ss_pred             hh
Confidence            86

>KOG1941|consensus

Probab=99.55  E-value=1.8e-12  Score=114.33  Aligned_cols=228  Identities=15%  Similarity=0.142  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC----
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK----  110 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~----  110 (480)
                      .++...+|..+...+.|++++++|++|+++.  ..+..-....+..+|.+ +.++.|+++|+-+..+|.++....+    
T Consensus       122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl-f~~l~D~~Kal~f~~kA~~lv~s~~l~d~  200 (518)
T KOG1941|consen  122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL-FAQLKDYEKALFFPCKAAELVNSYGLKDW  200 (518)
T ss_pred             chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH-HHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence            3566779999999999999999999999996  33333456678899999 7888999999999999999887655    


Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--  184 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--  184 (480)
                      .......+++.|+..+..+|..-.|.++.+++.+....    +..+.+...+|.+|...|+.+.|..-|+.|+.+...  
T Consensus       201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g  280 (518)
T KOG1941|consen  201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG  280 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence            22556778899999999999999999999977654432    445778888999999999999999999999988655  


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCchHH-----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          185 NFPEAVKTLGEIGDLYELQEKPFEL-----VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      +......++...|++.....- ..+     |++.-++.++++..++....+......++.+|..+|.-++-......+.+
T Consensus       281 drmgqv~al~g~Akc~~~~r~-~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  281 DRMGQVEALDGAAKCLETLRL-QNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            566677888888888877665 455     99999999999999999999999999999999999999988888877777


Q ss_pred             HHHhhcc
Q psy875          260 LEEKLDL  266 (480)
Q Consensus       260 l~~~~~~  266 (480)
                      ....+..
T Consensus       360 ~~~e~~L  366 (518)
T KOG1941|consen  360 CVEETEL  366 (518)
T ss_pred             HHHHHhh
Confidence            6655443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.54  E-value=9.3e-13  Score=117.56  Aligned_cols=200  Identities=17%  Similarity=0.106  Sum_probs=150.8

Q ss_pred             hhHHHhhccchhhhhhhHHHHhh-hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875            3 FKIALSRGIGLSDSLDSACTELH-TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI   81 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l   81 (480)
                      .+.++++|.. +...++....+. +.+.....+....++..+|.++...|++++|+++++++++.    .+.....+..+
T Consensus        31 ~~~~~~la~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~  105 (234)
T TIGR02521        31 AKIRVQLALG-YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHH
Confidence            3556666666 333333222211 11112223345678899999999999999999999999998    44455677889


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT  161 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~  161 (480)
                      |.+|... |++++|+.++++++....    .+.....+.++|.++...|++++|..++.+++...+.  ....+..+|.+
T Consensus       106 ~~~~~~~-g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~  178 (234)
T TIGR02521       106 GTFLCQQ-GKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAEL  178 (234)
T ss_pred             HHHHHHc-ccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHHH
Confidence            9995555 999999999999997432    2223456788999999999999999999999977654  34678899999


Q ss_pred             HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      +...|++++|+.+++++++..    +.....+..++.++...|+ .++|..+.+....
T Consensus       179 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~  231 (234)
T TIGR02521       179 YYLRGQYKDARAYLERYQQTY----NQTAESLWLGIRIARALGD-VAAAQRYGAQLQK  231 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence            999999999999999999882    2234556678899999999 9999888776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.54  E-value=9.4e-13  Score=141.65  Aligned_cols=204  Identities=20%  Similarity=0.220  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc---------
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ---------  108 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~---------  108 (480)
                      ..++..|..+..+|++++|+..+.++++.    .|....++..+|.+|... |++++|+..+++++.....         
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~a   97 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQK----DPNDAEARFLLGKIYLAL-GDYAAAEKELRKALSLGYPKNQVLPLLA   97 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCChhhhHHHHH
Confidence            34555566666666666666666666665    444445555666663333 6666666666665543211         


Q ss_pred             --------------------CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875          109 --------------------NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus       109 --------------------~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~  168 (480)
                                          ....+....++..+|.+|...|++++|+..|++++...+.  ...++..+|.++...|++
T Consensus        98 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~  175 (899)
T TIGR02917        98 RAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALAENRF  175 (899)
T ss_pred             HHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHCCCH
Confidence                                1123445667788999999999999999999988876654  346778888899999999


Q ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q psy875          169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFT  248 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  248 (480)
                      ++|+..++++++..    +.....+..+|.++...|+ +++|...|++++..      .+....++..++.++...|+++
T Consensus       176 ~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~g~~~  244 (899)
T TIGR02917       176 DEARALIDEVLTAD----PGNVDALLLKGDLLLSLGN-IELALAAYRKAIAL------RPNNPAVLLALATILIEAGEFE  244 (899)
T ss_pred             HHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHH
Confidence            99999998888763    3345677788888888888 88888888888765      1222345566677777777777


Q ss_pred             HHHHHHHHHHH
Q psy875          249 ELEQIKTELKS  259 (480)
Q Consensus       249 ~A~~~~~~~~~  259 (480)
                      +|...++++.+
T Consensus       245 ~A~~~~~~~~~  255 (899)
T TIGR02917       245 EAEKHADALLK  255 (899)
T ss_pred             HHHHHHHHHHH
Confidence            77776666544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.54  E-value=1.1e-12  Score=119.93  Aligned_cols=223  Identities=13%  Similarity=0.105  Sum_probs=170.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~  107 (480)
                      ...+...+..|...|..|...+++++|.++|.++..+.  .++....+.++...+.+ +.. .++++|+.+|++|+.++.
T Consensus        28 ~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~-~~~~~Ai~~~~~A~~~y~  105 (282)
T PF14938_consen   28 KPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKK-GDPDEAIECYEKAIEIYR  105 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHH-TTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHh-hCHHHHHHHHHHHHHHHH
Confidence            45778889999999999999999999999999999987  44455567788888988 566 599999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      ..+.....+.++..+|.+|... |++++|+++|++++.....    .....++..+|.++..+|+|++|++.|++.....
T Consensus       106 ~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  106 EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999 9999999999999865433    2336788899999999999999999999988764


Q ss_pred             hc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHH
Q psy875          183 AR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH--DKFTELEQIKTE  256 (480)
Q Consensus       183 ~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~  256 (480)
                      ..   ........+...+.+++..|+ +..|...+++........... ........|...+...  ..+..|..-|+.
T Consensus       186 l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~e~f~~av~~~d~  262 (282)
T PF14938_consen  186 LENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDVEAFTEAVAEYDS  262 (282)
T ss_dssp             CCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred             hcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence            33   233444566788889999999 999988888876553333333 3444556666666543  345555555543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.54  E-value=9.7e-13  Score=121.21  Aligned_cols=199  Identities=14%  Similarity=0.034  Sum_probs=141.1

Q ss_pred             hhhHHHhhccchhhhhhhHHHH-hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHH
Q psy875            2 RFKIALSRGIGLSDSLDSACTE-LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE   80 (480)
Q Consensus         2 ~~~~~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   80 (480)
                      +++.|+.+|.+ +...+..... ..+.+.....+....+++.+|.++...|++++|+..|++++++    .|....++.+
T Consensus        63 ~a~~~~~~g~~-~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~  137 (296)
T PRK11189         63 RAQLHYERGVL-YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAYLN  137 (296)
T ss_pred             hHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHH
Confidence            46778899998 6666663332 2222333344556789999999999999999999999999999    6777788999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHH
Q psy875           81 IGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQ  160 (480)
Q Consensus        81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~  160 (480)
                      +|.+|+.. |++++|+..+++++...+..   +. ...+   ..+....+++++|+..+.+.....+.+..     ..+.
T Consensus       138 lg~~l~~~-g~~~eA~~~~~~al~~~P~~---~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~-----~~~~  204 (296)
T PRK11189        138 RGIALYYG-GRYELAQDDLLAFYQDDPND---PY-RALW---LYLAESKLDPKQAKENLKQRYEKLDKEQW-----GWNI  204 (296)
T ss_pred             HHHHHHHC-CCHHHHHHHHHHHHHhCCCC---HH-HHHH---HHHHHccCCHHHHHHHHHHHHhhCCcccc-----HHHH
Confidence            99996555 99999999999999875532   21 1111   12345578999999999876643322221     1345


Q ss_pred             HHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          161 TYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       161 ~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ++...|++.++ ..++.+.+....   ..+....+|+++|.++...|+ +++|+.+|++|++.
T Consensus       205 ~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-~~~A~~~~~~Al~~  265 (296)
T PRK11189        205 VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-LDEAAALFKLALAN  265 (296)
T ss_pred             HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence            55556666544 234443322211   134567899999999999999 99999999999976

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=1.9e-13  Score=122.12  Aligned_cols=129  Identities=35%  Similarity=0.466  Sum_probs=116.4

Q ss_pred             CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC-----HHHHHHH
Q psy875          330 NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN-----LTLVQSL  404 (480)
Q Consensus       330 ~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~-----~~~~~~l  404 (480)
                      .........+++.++..+...++++++..|++++..+                ..|.||||+|+..++     .++++.|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~~g~t~l~~a~~~~~~~~~~~~~~~~l  130 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKD----------------ADGDTPLHLAALNGNPPEGNIEVAKLL  130 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccccc----------------CCCCcHHHHHHhcCCcccchHHHHHHH
Confidence            3444556788999999999999999999999997654                359999999999999     9999999


Q ss_pred             HhcCC---CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875          405 LKQGH---PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       405 l~~g~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  476 (480)
                      ++.|+   ..+.+|..|+||||+|+..|+.++++.|++.|++++  ..+..|.||++.|+..++.+++..++..|
T Consensus       131 l~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999   566679999999999999999999999999999999  55899999999999999999999999865

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.51  E-value=2.5e-12  Score=115.13  Aligned_cols=180  Identities=12%  Similarity=0.061  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ..+..+..++.+|..+...|++++|+..+++++.. .+..+....++..+|.+|+.. |++++|+..++++++..+... 
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~~-  104 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLHPNHP-  104 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCC-
Confidence            44667889999999999999999999999999988 444555566789999995555 999999999999998876433 


Q ss_pred             chHHHHHHHHHHHHHHhc--------CChHHHHHHHHHHhcccccccHH---------------HHHHHHHHHHHhhccH
Q psy875          112 DKLIRTVMRSIKKLYKKH--------DNLDSACSELHTVLSSDLCKDLA---------------SCYISLAQTYKDNKQY  168 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~--------~~~~~A~~~~~~~l~~~~~~~~~---------------~~~~~la~~y~~~~~~  168 (480)
                        ....++..+|.++...        |++++|+..|++++...+.....               .....+|.+|...|++
T Consensus       105 --~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~  182 (235)
T TIGR03302       105 --DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY  182 (235)
T ss_pred             --chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence              3345678888888876        88999999999998777664321               1124689999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875          169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL  218 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al  218 (480)
                      .+|+..++++++..++. +....++..+|.++...|+ +++|..+++...
T Consensus       183 ~~A~~~~~~al~~~p~~-~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~  230 (235)
T TIGR03302       183 VAAINRFETVVENYPDT-PATEEALARLVEAYLKLGL-KDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence            99999999999886543 5567899999999999999 999999877653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125|consensus

Probab=99.51  E-value=7e-13  Score=124.11  Aligned_cols=203  Identities=15%  Similarity=0.142  Sum_probs=175.8

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      +..|..+.+.|+..+|.=.|+.|+.-    .|..+.+|..+|.+ +...++-..|+..+++|+++.+..      ..++.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~-qaENE~E~~ai~AL~rcl~LdP~N------leaLm  357 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGIT-QAENENEQNAISALRRCLELDPTN------LEALM  357 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhH-hhhccchHHHHHHHHHHHhcCCcc------HHHHH
Confidence            66788999999999999999999888    89999999999999 777799999999999999985433      56788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhccccc---------------------------------------c--cHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLC---------------------------------------K--DLASCYISLA  159 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~---------------------------------------~--~~~~~~~~la  159 (480)
                      .||..|...|.-.+|++++.+-+...+.                                       +  .-..++.-||
T Consensus       358 aLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG  437 (579)
T KOG1125|consen  358 ALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG  437 (579)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence            9999999999999999999865432211                                       1  2245677899


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy875          160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK  239 (480)
Q Consensus       160 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  239 (480)
                      .+|.-.|+|++|+.+|+.||..    .|.-...|+.||..+..-.+ ..+|+..|++|+++      .|...++.++||.
T Consensus       438 VLy~ls~efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqL------qP~yVR~RyNlgI  506 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNR-SEEAISAYNRALQL------QPGYVRVRYNLGI  506 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhc------CCCeeeeehhhhh
Confidence            9999999999999999999998    66668899999999999999 99999999999998      7788899999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          240 LYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       240 ~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                      .+..+|.|++|..++-.++.+...-.
T Consensus       507 S~mNlG~ykEA~~hlL~AL~mq~ks~  532 (579)
T KOG1125|consen  507 SCMNLGAYKEAVKHLLEALSMQRKSR  532 (579)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhccc
Confidence            99999999999999999998876633

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1e-11  Score=108.22  Aligned_cols=212  Identities=12%  Similarity=0.171  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ..+....+...||+.|.++|..+.||..-+..++--.-.......+...+|.- |+..|-++.|+..|....+.      
T Consensus        64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D-ym~aGl~DRAE~~f~~L~de------  136 (389)
T COG2956          64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD-YMAAGLLDRAEDIFNQLVDE------  136 (389)
T ss_pred             cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHhcc------
Confidence            34567788999999999999999999998876654111123356678889999 55559999999888776543      


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC---KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE  188 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~  188 (480)
                      +..-..+...|-.+|....++++|++.-++.....+.   -.++..|..||..+....+.+.|+..+.+|++.    .+.
T Consensus       137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa----~~~  212 (389)
T COG2956         137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA----DKK  212 (389)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh----Ccc
Confidence            2223457788999999999999999999987766554   456888999999999999999999999999998    556


Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .+.+-..+|+++...|+ |+.|++.++.+++.     ++.....+...|..+|.++|+.++...++.++.+.
T Consensus       213 cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         213 CVRASIILGRVELAKGD-YQKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             ceehhhhhhHHHHhccc-hHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            66777889999999999 99999999998765     56778899999999999999999999999988763

>KOG0547|consensus

Probab=99.50  E-value=1.1e-12  Score=120.24  Aligned_cols=182  Identities=18%  Similarity=0.163  Sum_probs=153.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875           26 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL  105 (480)
Q Consensus        26 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~  105 (480)
                      +....++.+.-..+|+..|.+++-.++|++|+.-|++++++    .|..+..+..++.+.|.+ +.++++...|+.+.+-
T Consensus       383 F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkk  457 (606)
T KOG0547|consen  383 FNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL----DPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKK  457 (606)
T ss_pred             HHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            34444555566778999999999999999999999999999    888899999999995666 8999999999999988


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH----HHHHHHHHHHHHhh-ccHHHHHHHHHHHHh
Q psy875          106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL----ASCYISLAQTYKDN-KQYNLAVDYFNKELR  180 (480)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~~~la~~y~~~-~~~~~A~~~~~~al~  180 (480)
                      ++..      ..+|.-.|.++..+++|++|+++|.+++...+....    +..+..-|.+..+. +++..|+..+.+|++
T Consensus       458 FP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e  531 (606)
T KOG0547|consen  458 FPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE  531 (606)
T ss_pred             CCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence            7655      567888999999999999999999999977765221    23345555555444 899999999999999


Q ss_pred             hhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                      +    .|..-.++..||.+..++|+ .++|+++|+++..+++.
T Consensus       532 ~----Dpkce~A~~tlaq~~lQ~~~-i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  532 L----DPKCEQAYETLAQFELQRGK-IDEAIELFEKSAQLART  569 (606)
T ss_pred             c----CchHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHh
Confidence            9    67777889999999999999 99999999999988763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.49  E-value=4.8e-13  Score=106.90  Aligned_cols=96  Identities=45%  Similarity=0.713  Sum_probs=89.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                      +.+|.||||+|+..++.+++++|++.|.+++.++..|.||+|.|+..+..+++++|+..|++++  ..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN--ARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHH
Confidence            4569999999999999999999999999989999999999999999999999999999998888  45888999999999


Q ss_pred             HcCCHHHHHHHHHcCCCC
Q psy875          462 NHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~ga~~  479 (480)
                      ..++.+++++|+++|.++
T Consensus        82 ~~~~~~~~~~L~~~~~~~   99 (126)
T cd00204          82 RNGNLDVVKLLLKHGADV   99 (126)
T ss_pred             HcCcHHHHHHHHHcCCCC
Confidence            999999999999998654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG2002|consensus

Probab=99.48  E-value=4.9e-12  Score=125.01  Aligned_cols=208  Identities=15%  Similarity=0.141  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ..+.+.|+..++..|+|+.+.....-++.. .......+..++.+|..|+.+ |+|++|..||.+++......     ..
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~-t~~~~~~aes~Y~~gRs~Ha~-Gd~ekA~~yY~~s~k~~~d~-----~~  342 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKN-TENKSIKAESFYQLGRSYHAQ-GDFEKAFKYYMESLKADNDN-----FV  342 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccCCCC-----cc
Confidence            446788999999999999999999998887 555566778899999997777 99999999999998765432     23


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK----QYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                      ..+..+|.+|...|+++.|+.+|++.+...|+  .......||.+|...+    .-++|..+..++++.    .+....+
T Consensus       343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~--~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~----~~~d~~a  416 (1018)
T KOG2002|consen  343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN--NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ----TPVDSEA  416 (1018)
T ss_pred             ccccchhHHHHHhchHHHHHHHHHHHHHhCcc--hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc----ccccHHH
Confidence            45678999999999999999999998866644  4466777888887775    667888888888877    4556788


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      |..+|.++....-  ..++.+|.+|+.+....... .-..++.++|..+...|++.+|...+.++...
T Consensus       417 ~l~laql~e~~d~--~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  417 WLELAQLLEQTDP--WASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             HHHHHHHHHhcCh--HHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence            9999999976544  55599999999887776655 56788999999999999999999999998775

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=4.8e-14  Score=93.81  Aligned_cols=55  Identities=49%  Similarity=0.748  Sum_probs=32.7

Q ss_pred             HHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          404 LLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       404 ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                      |++.| .++|.+|..|.||||+||..|+.+++++|++.|++++  ++|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~--~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN--AKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC--CCcCCCCCHHHhC
Confidence            56777 8899999999999999999999999999999999999  6699999999987

>KOG2003|consensus

Probab=99.47  E-value=3.1e-12  Score=116.08  Aligned_cols=199  Identities=13%  Similarity=0.115  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +.+..+.|++-+..|++++|.++|++|+.-    ...-..+++++|.. +..+|+.++|+.+|-|.-.+...      -+
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt-~e~~~~ldeald~f~klh~il~n------n~  558 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILLN------NA  558 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHHh------hH
Confidence            456677888888888999999999888765    55556778888888 44448899998888776655432      26


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      .++..++.+|..+.+..+|++.|.++....|..  ..++..||.+|-+.|+-.+|..++-.+.+.+    |....+-..|
T Consensus       559 evl~qianiye~led~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryf----p~nie~iewl  632 (840)
T KOG2003|consen  559 EVLVQIANIYELLEDPAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYF----PCNIETIEWL  632 (840)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhccccc----CcchHHHHHH
Confidence            677888888888888899998888877555432  3567778888888888888888877776663    3334455567


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      |..|....- .++|+.||++|--+      .+.+......++.++.+.|+|.+|...|+...+
T Consensus       633 ~ayyidtqf-~ekai~y~ekaali------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  633 AAYYIDTQF-SEKAINYFEKAALI------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             HHHHHhhHH-HHHHHHHHHHHHhc------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            777777777 78888888887544      344555556678888888888888887776543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.47  E-value=7.6e-12  Score=114.45  Aligned_cols=183  Identities=17%  Similarity=0.170  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----c
Q psy875           74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----K  149 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~  149 (480)
                      .+..|...|.. +...++|++|...|.+|..+..+.++....+..|...+.+|... ++++|+.+|++++.....    .
T Consensus        34 Aa~~y~~Aa~~-fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   34 AADLYEKAANC-FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHH-HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHH-HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            34566666888 45559999999999999999988888888899999999998777 999999999998865443    3


Q ss_pred             cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-
Q psy875          150 DLASCYISLAQTYKDN-KQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-  225 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-  225 (480)
                      ..+.++..+|.+|... |++++|+++|++|++++..  .+.....++..+|.++...|+ |++|++.|++........+ 
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l  190 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR-YEEAIEIYEEVAKKCLENNL  190 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccc
Confidence            4478999999999999 9999999999999999776  345667888999999999999 9999999999876533333 


Q ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          226 DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ........+...+.++...|++..|...++++..
T Consensus       191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            2344556667788899999999999888877644

>KOG1125|consensus

Probab=99.46  E-value=3.5e-12  Score=119.50  Aligned_cols=213  Identities=15%  Similarity=0.169  Sum_probs=168.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           29 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        29 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      ...-.+.-+.++..||.+....++-..|+.-+++++++    .|....++..+|..|-.+ |.-.+|+.++.+-+....+
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----dP~NleaLmaLAVSytNe-g~q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL----DPTNLEALMALAVSYTNE-GLQNQALKMLDKWIRNKPK  385 (579)
T ss_pred             HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc----CCccHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCcc
Confidence            33445667899999999999999999999999999999    777778888999995555 8888999998888643311


Q ss_pred             C---------C---------Cch-------------------HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875          109 N---------K---------DDK-------------------LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL  151 (480)
Q Consensus       109 ~---------~---------~~~-------------------~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~  151 (480)
                      .         .         +..                   .-..++..||.+|...|+|++|+.+|+.+|...|.  -
T Consensus       386 y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn--d  463 (579)
T KOG1125|consen  386 YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN--D  463 (579)
T ss_pred             chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc--h
Confidence            0         0         000                   12334558999999999999999999999977754  4


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHH-
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLI-  230 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-  230 (480)
                      ...++.||.++..-.+.++|+..|.+|+++    .|....+.+|+|..+..+|- |++|.++|-.||.+-++....... 
T Consensus       464 ~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~-ykEA~~hlL~AL~mq~ks~~~~~~~  538 (579)
T KOG1125|consen  464 YLLWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGA-YKEAVKHLLEALSMQRKSRNHNKAP  538 (579)
T ss_pred             HHHHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhh-HHHHHHHHHHHHHhhhcccccccCC
Confidence            588999999999999999999999999999    67778899999999999999 999999999999987763322211 


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHH
Q psy875          231 ---RTVMRSMKKLYKKHDKFTELEQI  253 (480)
Q Consensus       231 ---~~~~~~l~~~~~~~g~~~~A~~~  253 (480)
                         ..++..|-.+...+++.+.+...
T Consensus       539 ~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  539 MASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             cchHHHHHHHHHHHHHcCCchHHHHh
Confidence               23444455666677777654443

>KOG0515|consensus

Probab=99.46  E-value=1.9e-13  Score=125.40  Aligned_cols=89  Identities=38%  Similarity=0.553  Sum_probs=83.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy875          389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI  468 (480)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~  468 (480)
                      |.-|+..|-+++|+-.+..--|+...|..|.|+||-|+..||.+||++||+.|+++|  ..|++||||||+|+..++..|
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN--a~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN--AADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc--CccCCCCchhhhhhhcCchHH
Confidence            456888999999999998888999999999999999999999999999999999999  669999999999999999999


Q ss_pred             HHHHHHcCCCC
Q psy875          469 VQALVSAGAEV  479 (480)
Q Consensus       469 ~~~Ll~~ga~~  479 (480)
                      ++.|++.|+-|
T Consensus       632 ckqLVe~Gaav  642 (752)
T KOG0515|consen  632 CKQLVESGAAV  642 (752)
T ss_pred             HHHHHhccceE
Confidence            99999999864

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2e-13  Score=90.43  Aligned_cols=54  Identities=50%  Similarity=0.716  Sum_probs=27.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875          418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV  473 (480)
Q Consensus       418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  473 (480)
                      |+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din--~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN--AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT---B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4555555555555555555555555555  33555555555555555555555553

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2.2e-13  Score=90.27  Aligned_cols=54  Identities=48%  Similarity=0.726  Sum_probs=46.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV  438 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  438 (480)
                      |.||||+|+..|+.+++++|++.|.++|.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999986

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.45  E-value=3.2e-11  Score=107.95  Aligned_cols=179  Identities=9%  Similarity=0.002  Sum_probs=144.3

Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-cc
Q psy875           72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KD  150 (480)
Q Consensus        72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~  150 (480)
                      ......++..|..|+.. |++++|+..+++++...+.   .+....++..+|.+|...|++++|+..|++++...|+ +.
T Consensus        30 ~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        30 EWPAEELYEEAKEALDS-GDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            44567888999995555 9999999999999887543   3445567899999999999999999999999987775 33


Q ss_pred             HHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHhhhhcCcHH-H------------HHHHHHHHHHHHHhCCchHH
Q psy875          151 LASCYISLAQTYKDN--------KQYNLAVDYFNKELRLHARNFPE-A------------VKTLGEIGDLYELQEKPFEL  209 (480)
Q Consensus       151 ~~~~~~~la~~y~~~--------~~~~~A~~~~~~al~~~~~~~~~-~------------~~~~~~l~~~~~~~~~~~~~  209 (480)
                      ...+++.+|.++...        |++++|++.++++++..+.+... .            ......+|.+|+.+|+ +.+
T Consensus       106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~  184 (235)
T TIGR03302       106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA-YVA  184 (235)
T ss_pred             hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hHH
Confidence            456788899999876        89999999999999885553211 0            1123478999999999 999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       210 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      |+..++++++..   ++.+....++..++.++.++|++++|..+++...
T Consensus       185 A~~~~~~al~~~---p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       185 AINRFETVVENY---PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHHHC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999988653   3345667889999999999999999999887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0515|consensus

Probab=99.45  E-value=2.5e-13  Score=124.58  Aligned_cols=127  Identities=24%  Similarity=0.273  Sum_probs=108.2

Q ss_pred             CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875          331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP  410 (480)
Q Consensus       331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~  410 (480)
                      ...+++..+|..|+..|.+++|+-.+..--|+..-                +..|.|+||-|+..|+.+||++|++.|++
T Consensus       545 RvrfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqp----------------NdEGITaLHNAiCaghyeIVkFLi~~gan  608 (752)
T KOG0515|consen  545 RVRFNPLALLLDAALEGELDLVQRIIYEVTDPSQP----------------NDEGITALHNAICAGHYEIVKFLIEFGAN  608 (752)
T ss_pred             ceecchHHHHHhhhhcchHHHHHHHHHhhcCCCCC----------------CccchhHHhhhhhcchhHHHHHHHhcCCc
Confidence            34678889999999999999999988776665543                23599999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH--HHcCCHHHHHHHHH
Q psy875          411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA--ANHGHTDIVQALVS  474 (480)
Q Consensus       411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A--~~~~~~~~~~~Ll~  474 (480)
                      +|..|.+||||||+|+..+...+++.|++.|+-+... .=+++.||..-+  ...|..+|.++|..
T Consensus       609 VNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAs-TlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  609 VNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFAS-TLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             ccCccCCCCchhhhhhhcCchHHHHHHHhccceEEee-ecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999988742 335788987765  34577788888853

>KOG2002|consensus

Probab=99.45  E-value=1.2e-11  Score=122.38  Aligned_cols=214  Identities=16%  Similarity=0.213  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ...+..+|++|..|..+|+|++|..+|.+++.. .++.  ....+..+|+. +...|+++.|+.+|++.+...+..    
T Consensus       304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-~~d~--~~l~~~GlgQm-~i~~~dle~s~~~fEkv~k~~p~~----  375 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-DNDN--FVLPLVGLGQM-YIKRGDLEESKFCFEKVLKQLPNN----  375 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-CCCC--ccccccchhHH-HHHhchHHHHHHHHHHHHHhCcch----
Confidence            356788999999999999999999999999988 3322  35677899999 455599999999999999875533    


Q ss_pred             HHHHHHHHHHHHHHhcC----ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcHH
Q psy875          114 LIRTVMRSIKKLYKKHD----NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFPE  188 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~  188 (480)
                        ..+...+|.+|...+    ..++|..+..+++...  +....+|..+|.+|....-+.. +.+|.+|+.+... ....
T Consensus       376 --~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~i  450 (1018)
T KOG2002|consen  376 --YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQI  450 (1018)
T ss_pred             --HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCC
Confidence              345567888888875    7788999999988655  5556889999999988766665 9999999977554 2334


Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD----KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      .+..++++|..++..|. +.+|..+|.+|+.......+.    .......++++.++..+++++.|.+.|+...+..
T Consensus       451 p~E~LNNvaslhf~~g~-~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  451 PPEVLNNVASLHFRLGN-IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             CHHHHHhHHHHHHHhcC-hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            56789999999999999 999999999999874422221    1234567899999999999999999998877654

>KOG0548|consensus

Probab=99.44  E-value=1.8e-11  Score=113.90  Aligned_cols=212  Identities=17%  Similarity=0.221  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-C
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK-D  111 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~-~  111 (480)
                      ....+...-.+|+..+...++..|+++|.+++++    . ....-+.+++-+|+.. |.+.+.+..-.+|++...... +
T Consensus       220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el----~-~~it~~~n~aA~~~e~-~~~~~c~~~c~~a~E~gre~rad  293 (539)
T KOG0548|consen  220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL----A-TDITYLNNIAAVYLER-GKYAECIELCEKAVEVGRELRAD  293 (539)
T ss_pred             HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH----h-hhhHHHHHHHHHHHhc-cHHHHhhcchHHHHHHhHHHHHH
Confidence            3456778899999999999999999999999999    3 3344456778885544 899988888888876544332 2


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------------------------ccHHHHHHHHHHHHHhhcc
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------------------------KDLASCYISLAQTYKDNKQ  167 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------------------------~~~~~~~~~la~~y~~~~~  167 (480)
                      ...++.++..+|..|..+++++.|+.+|++++.....                        +..+.--..-|+.++..|+
T Consensus       294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD  373 (539)
T ss_pred             HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence            3557778888999999999999999999988854333                        2223334445999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875          168 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       168 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  247 (480)
                      |..|+.+|.+++..    .|..+..|.|.|.+|.+++. +..|+.-.++++++      .+.....|...|.++..+.+|
T Consensus       374 y~~Av~~YteAIkr----~P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~~mk~y  442 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKR----DPEDARLYSNRAACYLKLGE-YPEALKDAKKCIEL------DPNFIKAYLRKGAALRAMKEY  442 (539)
T ss_pred             HHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHH
Confidence            99999999999988    57778899999999999999 99999999999988      677888899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy875          248 TELEQIKTELKSLE  261 (480)
Q Consensus       248 ~~A~~~~~~~~~l~  261 (480)
                      ++|++.|+++.++.
T Consensus       443 dkAleay~eale~d  456 (539)
T KOG0548|consen  443 DKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988754

>KOG3676|consensus

Probab=99.44  E-value=5.7e-13  Score=129.47  Aligned_cols=141  Identities=30%  Similarity=0.329  Sum_probs=116.0

Q ss_pred             CCCcCCCCcCCCchHHHHHHh---hCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875          325 NDKDSNLNLYNIESITISRNR---LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV  401 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~a~~---~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~  401 (480)
                      -+.+++..+..|.+++|.|..   .++.++++.|++.-..+--  ..         ...+.-.|.||||.|+.+.+.++|
T Consensus       132 ~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lin--d~---------~~~eeY~GqSaLHiAIv~~~~~~V  200 (782)
T KOG3676|consen  132 TDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIN--DI---------YTSEEYYGQSALHIAIVNRDAELV  200 (782)
T ss_pred             hhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhh--hh---------hhhHhhcCcchHHHHHHhccHHHH
Confidence            345667778889999998876   5677999999987552211  00         000112399999999999999999


Q ss_pred             HHHHhcCCCCCCCC---------C--------------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875          402 QSLLKQGHPVKVQD---------S--------------AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH  458 (480)
Q Consensus       402 ~~ll~~g~~~~~~~---------~--------------~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~  458 (480)
                      ++|++.|+|++++-         .              .|..||-+|+..++.+++++|+++|+|++  .+|++|+|.||
T Consensus       201 ~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~--aqDS~GNTVLH  278 (782)
T KOG3676|consen  201 RLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN--AQDSNGNTVLH  278 (782)
T ss_pred             HHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC--ccccCCChHHH
Confidence            99999999998652         1              26789999999999999999999999999  77999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCC
Q psy875          459 EAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      ..+.+-..+|..+++++|++
T Consensus       279 ~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  279 MLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             HHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=1e-12  Score=133.77  Aligned_cols=87  Identities=34%  Similarity=0.505  Sum_probs=83.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875          387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT  466 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~  466 (480)
                      ++|+.|+..|+.+.++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn--~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT--LLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCcH
Confidence            46889999999999999999999999999999999999999999999999999999999  5699999999999999999


Q ss_pred             HHHHHHHHc
Q psy875          467 DIVQALVSA  475 (480)
Q Consensus       467 ~~~~~Ll~~  475 (480)
                      +++++|+.+
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            999999998

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.41  E-value=2.7e-12  Score=117.99  Aligned_cols=197  Identities=15%  Similarity=0.134  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      .+..++.+ ...+++++|++++.++.+. .++    ...+..+..+| ...++++++...+.++.....    .+.-...
T Consensus        80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~-~~~----~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~~~----~~~~~~~  148 (280)
T PF13429_consen   80 DYERLIQL-LQDGDPEEALKLAEKAYER-DGD----PRYLLSALQLY-YRLGDYDEAEELLEKLEELPA----APDSARF  148 (280)
T ss_dssp             --------------------------------------------H-H-HHTT-HHHHHHHHHHHHH-T-------T-HHH
T ss_pred             cccccccc-ccccccccccccccccccc-ccc----cchhhHHHHHH-HHHhHHHHHHHHHHHHHhccC----CCCCHHH
Confidence            34444444 4556666666666655544 111    12223344553 334777777777777664221    1223456


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +..+|.++...|++++|+.+|++++...|+..  .+...++.++...|+++++.+.+....+..+.+    +..+..+|.
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~--~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~----~~~~~~la~  222 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELDPDDP--DARNALAWLLIDMGDYDEAREALKRLLKAAPDD----PDLWDALAA  222 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS----CCHCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH----HHHHHHHHH
Confidence            77888888888888888888888887775533  556778888888888888777777766653332    235667888


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ++..+|+ +++|+.+|+++++.      .+.-..++..+|.++...|++++|..+++++.+
T Consensus       223 ~~~~lg~-~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  223 AYLQLGR-YEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHT--HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT-----------------
T ss_pred             Hhccccc-cccccccccccccc------ccccccccccccccccccccccccccccccccc
Confidence            9999999 99999999988765      333445666888999999999999888887764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=1.8e-12  Score=131.85  Aligned_cols=105  Identities=28%  Similarity=0.315  Sum_probs=93.9

Q ss_pred             HHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy875          339 ITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG  418 (480)
Q Consensus       339 ~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g  418 (480)
                      .++.|+..|+.+++++|++.|++++..+                ..|.||||+|+..|+.+++++|++.|++++.+|..|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d----------------~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G  148 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRD----------------YDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG  148 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcC----------------CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            4778888999999999999999998754                359999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHc-------CCCCCCccCCCCCCcHHHHHH
Q psy875          419 WLPLHEAANHGHTDIVQALVSA-------GADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       419 ~t~l~~a~~~~~~~~~~~Ll~~-------g~~~~~~~~~~~g~tpl~~A~  461 (480)
                      +||||+|+..|+.+++++|+.+       |++++  ..+..|.+|+..+.
T Consensus       149 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~~~~  196 (664)
T PTZ00322        149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAK--PDSFTGKPPSLEDS  196 (664)
T ss_pred             CCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCC--ccccCCCCccchhh
Confidence            9999999999999999999998       88887  44677877776554

>KOG1129|consensus

Probab=99.38  E-value=5.6e-12  Score=109.89  Aligned_cols=198  Identities=13%  Similarity=0.072  Sum_probs=165.5

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      -..+|.+|.+.|-+.+|.+.++.+++.     .....++..++.+ |....+...|+..+.+.++.++..      ...+
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskv-Y~ridQP~~AL~~~~~gld~fP~~------VT~l  293 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKV-YQRIDQPERALLVIGEGLDSFPFD------VTYL  293 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHH-HHHhccHHHHHHHHhhhhhcCCch------hhhh
Confidence            467999999999999999999999986     3345667788999 455599999999999998775432      3345


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~  199 (480)
                      ..++.++..++++++|.++|+.+++..+.  ...+...+|..|+..++.+-|+.||.+.+++    ....+..++|+|.+
T Consensus       294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~--nvEaiAcia~~yfY~~~PE~AlryYRRiLqm----G~~speLf~NigLC  367 (478)
T KOG1129|consen  294 LGQARIHEAMEQQEDALQLYKLVLKLHPI--NVEAIACIAVGYFYDNNPEMALRYYRRILQM----GAQSPELFCNIGLC  367 (478)
T ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHhcCCc--cceeeeeeeeccccCCChHHHHHHHHHHHHh----cCCChHHHhhHHHH
Confidence            68899999999999999999999976643  3345556888899999999999999999998    33446789999999


Q ss_pred             HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ++..++ ++-++..|++|+..+.   ++....+++++|+.+....|++..|.+.++-+..
T Consensus       368 C~yaqQ-~D~~L~sf~RAlstat---~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~  423 (478)
T KOG1129|consen  368 CLYAQQ-IDLVLPSFQRALSTAT---QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT  423 (478)
T ss_pred             HHhhcc-hhhhHHHHHHHHhhcc---CcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence            999999 9999999999998764   3445678999999999999999999999987654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=6.6e-13  Score=88.29  Aligned_cols=44  Identities=39%  Similarity=0.521  Sum_probs=30.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEA  425 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a  425 (480)
                      |..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus        13 d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   13 DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            44599999999999999999999999999999999999999987

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.34  E-value=2e-10  Score=119.92  Aligned_cols=206  Identities=10%  Similarity=-0.009  Sum_probs=158.1

Q ss_pred             HHHHHH-HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           37 ASCYIS-LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        37 ~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ..+... +|.+ ...|++++|+..|+++++. ....+..+..  .+|.+|.. .|++++|+.+|++++...+..  ....
T Consensus       237 ~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~-~~~~P~~a~~--~la~~yl~-~g~~e~A~~~l~~~l~~~p~~--~~~~  309 (765)
T PRK10049        237 QRARIDRLGAL-LARDRYKDVISEYQRLKAE-GQIIPPWAQR--WVASAYLK-LHQPEKAQSILTELFYHPETI--ADLS  309 (765)
T ss_pred             HHHHHHHHHHH-HHhhhHHHHHHHHHHhhcc-CCCCCHHHHH--HHHHHHHh-cCCcHHHHHHHHHHhhcCCCC--CCCC
Confidence            334343 4444 5779999999999998876 3333444433  35888444 599999999999988643221  1111


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      ......++.++...|++++|+.+++++....|.             +....++..+|.++...|++++|+..+++++...
T Consensus       310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~  389 (765)
T PRK10049        310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA  389 (765)
T ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            234567778889999999999999988866542             1234577889999999999999999999999884


Q ss_pred             hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          183 ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                          |.....+..+|.++...|+ +++|+..+++++.+      .|....++..++.++..+|++++|+..++++.+.
T Consensus       390 ----P~n~~l~~~lA~l~~~~g~-~~~A~~~l~~al~l------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        390 ----PGNQGLRIDYASVLQARGW-PRAAENELKKAEVL------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             ----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence                4446789999999999999 99999999999987      3444457778899999999999999999888764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=4.9e-10  Score=97.97  Aligned_cols=203  Identities=14%  Similarity=0.126  Sum_probs=166.3

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      |..|.-+.-..+.++|+..|...++.    .+....+...+|.+ +...|..+.|+...+-.+.-....  ......+..
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnL-fRsRGEvDRAIRiHQ~L~~spdlT--~~qr~lAl~  111 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE----DPETFEAHLTLGNL-FRSRGEVDRAIRIHQTLLESPDLT--FEQRLLALQ  111 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc----CchhhHHHHHHHHH-HHhcchHHHHHHHHHHHhcCCCCc--hHHHHHHHH
Confidence            34455566678999999999999887    78888899999999 555599999998877655432211  233456788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDL  199 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~  199 (480)
                      .||.=|...|-++.|...|........-  ...+...|..+|....+|++|++...+-.++... .....+..|+.+|..
T Consensus       112 qL~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~  189 (389)
T COG2956         112 QLGRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence            9999999999999999999987654322  2367888999999999999999999988888555 567889999999999


Q ss_pred             HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      +....+ .+.|...+.+|+..      .+.-.++-..+|+++...|+|+.|.+.++.+.+
T Consensus       190 ~~~~~~-~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e  242 (389)
T COG2956         190 ALASSD-VDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLE  242 (389)
T ss_pred             Hhhhhh-HHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence            999999 99999999999987      445566777899999999999999999988765

>KOG1710|consensus

Probab=99.32  E-value=6.3e-12  Score=107.04  Aligned_cols=114  Identities=22%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             hhhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchH
Q psy875          309 RTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETA  388 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  388 (480)
                      ....+++|--..++..+...+|..+.+++++|..|+..|+.++|++|+++|+|+|.+..               ..+.||
T Consensus        18 e~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh---------------g~~YTp   82 (396)
T KOG1710|consen   18 EAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH---------------GTLYTP   82 (396)
T ss_pred             HHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc---------------cccccH
Confidence            34456777777777777777899999999999999999999999999999999998643               238899


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q psy875          389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL  437 (480)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  437 (480)
                      ||+|+.+|+.++.++|++.|+.+...|.-|+|+-.+|+.-|+.+||..+
T Consensus        83 LmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   83 LMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            9999999999999999999999999999999999999999999988765

>KOG0548|consensus

Probab=99.32  E-value=5.3e-10  Score=104.28  Aligned_cols=195  Identities=16%  Similarity=0.197  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH---ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      -...+.+.+.+|+..|.+.+.+....++++.-   -.+...++.++..+|..|... ++++.|+.+|++++...+.....
T Consensus       256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~-~~~~~ai~~~~kaLte~Rt~~~l  334 (539)
T KOG0548|consen  256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR-EDYEGAIKYYQKALTEHRTPDLL  334 (539)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH-HhHHHHHHHHHHHhhhhcCHHHH
Confidence            34556788899999999999999999888872   111223556666788895555 99999999999999765542111


Q ss_pred             --------------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875          113 --------------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV  172 (480)
Q Consensus       113 --------------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~  172 (480)
                                          +..+.-...-|..++..|+|..|+..|.+++...  |+-+..|.|.|.+|..++.+..|+
T Consensus       335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL  412 (539)
T KOG0548|consen  335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEAL  412 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHH
Confidence                                2223334477999999999999999999988666  566789999999999999999999


Q ss_pred             HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875          173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH  244 (480)
Q Consensus       173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  244 (480)
                      .-.++++++    .|.....|..-|.++..+++ |++|++.|+++++.      .+....+...+.++...+
T Consensus       413 ~Da~~~ieL----~p~~~kgy~RKg~al~~mk~-ydkAleay~eale~------dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  413 KDAKKCIEL----DPNFIKAYLRKGAALRAMKE-YDKALEAYQEALEL------DPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHhc----CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHh
Confidence            999999999    77788999999999999999 99999999999987      344455555555555554

>KOG2076|consensus

Probab=99.31  E-value=3.3e-10  Score=111.63  Aligned_cols=96  Identities=14%  Similarity=0.122  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR  231 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  231 (480)
                      ...|..++..|.+.|+|.+|+.++-......   .......|..+|.+|..+|. |++|+++|++++..      .|...
T Consensus       414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~---~~~~~~vw~~~a~c~~~l~e-~e~A~e~y~kvl~~------~p~~~  483 (895)
T KOG2076|consen  414 VDLYLDLADALTNIGKYKEALRLLSPITNRE---GYQNAFVWYKLARCYMELGE-YEEAIEFYEKVLIL------APDNL  483 (895)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhcCc---cccchhhhHHHHHHHHHHhh-HHHHHHHHHHHHhc------CCCch
Confidence            4467778888888888888888887766542   22236688889999999999 99999999988877      45556


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          232 TVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       232 ~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      ++...|+.++.++|++++|.+.+...
T Consensus       484 D~Ri~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  484 DARITLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             hhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence            67778888999999998888777553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.30  E-value=3e-10  Score=108.56  Aligned_cols=208  Identities=12%  Similarity=-0.000  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ++.+.+|..+|.++...|+++.+.+.+.++.... .............|.++... |++++|...+++++...+..   .
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~---~   77 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIA-GDLPKALALLEQLLDDYPRD---L   77 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCc---H
Confidence            3457789999999999999999999988888773 32223334445567774555 99999999999999875422   1


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLS--SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                         .++.. +..+...|.+..+.....+++.  ....+.....+..+|.++..+|++++|+..+++++++.+.    ...
T Consensus        78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~----~~~  149 (355)
T cd05804          78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD----DAW  149 (355)
T ss_pred             ---HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CcH
Confidence               22222 4444444444333333333332  1223555677788999999999999999999999998443    356


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      .+..+|.++...|+ +++|+.++++++.....  .+......+..++.++..+|++++|...++++
T Consensus       150 ~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         150 AVHAVAHVLEMQGR-FKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            78889999999999 99999999999876432  23334456778999999999999999999987

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1710|consensus

Probab=99.30  E-value=2.8e-11  Score=103.13  Aligned_cols=122  Identities=29%  Similarity=0.301  Sum_probs=103.3

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      .+..+|..+...+..+-..-|++---.+|                ..||+|.+||..|+..|+.+++++|++.|+|+|..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn----------------~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~   74 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVN----------------QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK   74 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhh----------------ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc
Confidence            44566777777777777777776532233                45678999999999999999999999999999875


Q ss_pred             -CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          415 -DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       415 -~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                       +..+.||||+|+..|..++..+|++.|+.+.  ..++-|+|+-..|+.-|+.+||..+-.
T Consensus        75 qhg~~YTpLmFAALSGn~dvcrllldaGa~~~--~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   75 QHGTLYTPLMFAALSGNQDVCRLLLDAGARMY--LVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cccccccHHHHHHHcCCchHHHHHHhccCccc--cccchhhhHHHHHHHhcchHHHHHHhc
Confidence             4678999999999999999999999999998  668999999999999999999987643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.29  E-value=1.7e-11  Score=112.70  Aligned_cols=201  Identities=17%  Similarity=0.161  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      -...+..+|.+....++++.|+..|++.+..    .+.....+..++.+ ... +++++|+.++.++.+...   ++   
T Consensus        43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~----~~~~~~~~~~l~~l-~~~-~~~~~A~~~~~~~~~~~~---~~---  110 (280)
T PF13429_consen   43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS----DKANPQDYERLIQL-LQD-GDPEEALKLAEKAYERDG---DP---  110 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccc----cccccccccccccc-ccc-cccccccccccccccccc---cc---
Confidence            3466777888888999999999999998887    33333344555555 444 889999998888775432   22   


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                       ..+.....++...++++++...+.++......+.-...+..+|.++.+.|++++|+..|+++++.    .|....+...
T Consensus       111 -~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~P~~~~~~~~  185 (280)
T PF13429_consen  111 -RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL----DPDDPDARNA  185 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----TT-HHHHHH
T ss_pred             -chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHH
Confidence             23345667889999999999999987654433455678889999999999999999999999999    4444567788


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ++.++...|+ ++++.+.+.........  ++    ..+..+|.+|..+|++++|+.+++++...
T Consensus       186 l~~~li~~~~-~~~~~~~l~~~~~~~~~--~~----~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  186 LAWLLIDMGD-YDEAREALKRLLKAAPD--DP----DLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             HHHHHCTTCH-HHHHHHHHHHHHHH-HT--SC----CHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCC-hHHHHHHHHHHHHHCcC--HH----HHHHHHHHHhccccccccccccccccccc
Confidence            9999999999 99988877776655421  11    24457899999999999999999998763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.29  E-value=3.7e-09  Score=113.92  Aligned_cols=229  Identities=12%  Similarity=0.039  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-h-c--cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-A-R--NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK  110 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~-~--~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~  110 (480)
                      ....++..+|.++...|+++.|..++.+++.+. . .  ........+..+|.+++.. |++++|...+.+++.+.....
T Consensus       529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~  607 (903)
T PRK04841        529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLEVLSNYQ  607 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHhhhccC
Confidence            344566667777777777777777777776664 1 1  1111233344566664444 777777777777776655433


Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-H----HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-L----ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN  185 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~  185 (480)
                       ......++..+|.++...|++++|...+.++........ .    ..........+...|+.+.|..++..........
T Consensus       608 -~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~  686 (903)
T PRK04841        608 -PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN  686 (903)
T ss_pred             -chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence             222344556677777777777777777766654322111 0    0000011233344566666666655543321111


Q ss_pred             cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                      .......+..+|.++...|+ +++|...+++++...+..+.......++..++.++...|+.++|...+.++.++....+
T Consensus       687 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        687 NHFLQGQWRNIARAQILLGQ-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             chhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence            11122335678999999999 99999999999999888888888888999999999999999999999999999886544


Q ss_pred             c
Q psy875          266 L  266 (480)
Q Consensus       266 ~  266 (480)
                      .
T Consensus       766 ~  766 (903)
T PRK04841        766 F  766 (903)
T ss_pred             h
Confidence            3

>KOG4369|consensus

Probab=99.28  E-value=3.5e-12  Score=126.80  Aligned_cols=152  Identities=22%  Similarity=0.260  Sum_probs=87.6

Q ss_pred             CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875          314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA  393 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~  393 (480)
                      |..-+..++...+.++...+..+.++++.|+..||..+|+.|+.+.+++..+.               |..+.|+|-+||
T Consensus       768 gh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQs---------------drtkdt~lSlac  832 (2131)
T KOG4369|consen  768 GHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQS---------------DRTKDTMLSLAC  832 (2131)
T ss_pred             ccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhc---------------ccccCceEEEec
Confidence            33333333333444444444444555555555555555555555555554432               223566666666


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875          394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV  473 (480)
Q Consensus       394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  473 (480)
                      ..|..++|++||..|++-..++-...|||.+|...|.+++|+.|+.+|..+|.....+.|..||+.|..+||.+.++.|+
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            66666666666666666656655566666666666666666666666666665444556666666666666666666666


Q ss_pred             HcCCCCC
Q psy875          474 SAGAEVS  480 (480)
Q Consensus       474 ~~ga~~~  480 (480)
                      +.|.|||
T Consensus       913 ~~gsdiN  919 (2131)
T KOG4369|consen  913 QPGSDIN  919 (2131)
T ss_pred             cccchhc
Confidence            6666654

>KOG2003|consensus

Probab=99.27  E-value=1.4e-09  Score=99.25  Aligned_cols=200  Identities=14%  Similarity=0.112  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      ......+++++|..+..+|+.++|+.+|.+.-.+    ....+..+..++.+| ..+.+..+|++++.++..+.+.   +
T Consensus       520 dasc~ealfniglt~e~~~~ldeald~f~klh~i----l~nn~evl~qianiy-e~led~aqaie~~~q~~slip~---d  591 (840)
T KOG2003|consen  520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI----LLNNAEVLVQIANIY-ELLEDPAQAIELLMQANSLIPN---D  591 (840)
T ss_pred             chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----HHhhHHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCC---C
Confidence            3456778999999999999999999999998777    445567788999995 5559999999999999877543   2


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                         ..++..||.+|-+.|+-.+|..|+-.+....|.  .....-.||..|.+..-+++|+.||+++--+    .|.....
T Consensus       592 ---p~ilskl~dlydqegdksqafq~~ydsyryfp~--nie~iewl~ayyidtqf~ekai~y~ekaali----qp~~~kw  662 (840)
T KOG2003|consen  592 ---PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC--NIETIEWLAAYYIDTQFSEKAINYFEKAALI----QPNQSKW  662 (840)
T ss_pred             ---HHHHHHHHHHhhcccchhhhhhhhhhcccccCc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CccHHHH
Confidence               346788999999999999999998877655543  2355667999999999999999999998777    4566677


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      ..-++.++.+.|+ |++|.+.|+..-..   .   +.-.+++..|.++.-.+|-. +|.+|.++.
T Consensus       663 qlmiasc~rrsgn-yqka~d~yk~~hrk---f---pedldclkflvri~~dlgl~-d~key~~kl  719 (840)
T KOG2003|consen  663 QLMIASCFRRSGN-YQKAFDLYKDIHRK---F---PEDLDCLKFLVRIAGDLGLK-DAKEYADKL  719 (840)
T ss_pred             HHHHHHHHHhccc-HHHHHHHHHHHHHh---C---ccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence            7788999999999 99999999876543   2   33345666677776666642 344444433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.27  E-value=5.1e-11  Score=106.25  Aligned_cols=97  Identities=41%  Similarity=0.614  Sum_probs=89.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC--CCCCccCCCCCCc
Q psy875          383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH-----TDIVQALVSAGA--DPNDKVQDSAGWL  455 (480)
Q Consensus       383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~g~--~~~~~~~~~~g~t  455 (480)
                      ..+.+++|.++..+...++.+++..|++++.++..|.||||+|+..++     .++++.|++.|+  +++. .+|..|.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~-~~~~~g~t  149 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN-LRDEDGNT  149 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc-ccCCCCCc
Confidence            348899999999999999999999999999999999999999999999     999999999999  3442 45999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          456 PLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       456 pl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |||+|+..|+.+++.+|++.|++++
T Consensus       150 pl~~A~~~~~~~~~~~ll~~~~~~~  174 (235)
T COG0666         150 PLHWAALNGDADIVELLLEAGADPN  174 (235)
T ss_pred             hhHHHHHcCchHHHHHHHhcCCCCc
Confidence            9999999999999999999999864

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.24  E-value=1.1e-08  Score=110.41  Aligned_cols=227  Identities=11%  Similarity=0.019  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ...+...+|.++...|++++|..++++++... .........+...+|.++.. .|++++|..++.+++......+....
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~  529 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHY  529 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHH
Confidence            45566678999999999999999999999863 22222244566788999544 49999999999999999887777777


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFP  187 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~  187 (480)
                      ...++.++|.++...|++++|..++++++.....      +....++..+|.++...|++++|...+.+++.+... .+.
T Consensus       530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  609 (903)
T PRK04841        530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence            7778899999999999999999999988765332      112445677899999999999999999999988654 233


Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--------------------------------------
Q psy875          188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL--------------------------------------  229 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------------------------  229 (480)
                      ....++..+|.++...|+ +++|...+.++..+.........                                      
T Consensus       610 ~~~~~~~~la~~~~~~G~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~  688 (903)
T PRK04841        610 QQLQCLAMLAKISLARGD-LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH  688 (903)
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence            456677889999999999 99999999999876543321100                                      


Q ss_pred             -HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875          230 -IRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL  264 (480)
Q Consensus       230 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~  264 (480)
                       .......++.++..+|++++|...++++.......
T Consensus       689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~  724 (903)
T PRK04841        689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSL  724 (903)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence             01113467888899999999999999988876443

>TIGR00540 hemY_coli hemY protein

Probab=99.23  E-value=2.7e-09  Score=103.40  Aligned_cols=213  Identities=9%  Similarity=0.031  Sum_probs=148.0

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc---------
Q psy875           42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD---------  112 (480)
Q Consensus        42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~---------  112 (480)
                      ..+.++...|+++.|+..+++..+.    .|....++..++.+ +...|++++|++.+.+..+.....+..         
T Consensus       158 ~~a~l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~-~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~  232 (409)
T TIGR00540       158 ARTRILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEA-YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE  232 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3477777778888888887777777    45445666778888 455599998888877766431110000         


Q ss_pred             -----------------------h----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875          113 -----------------------K----LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN  165 (480)
Q Consensus       113 -----------------------~----~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~  165 (480)
                                             +    ....++..++..+...|++++|++.++++++..++........-........
T Consensus       233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~  312 (409)
T TIGR00540       233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP  312 (409)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence                                   0    1234455788889999999999999999998776644221112233444556


Q ss_pred             ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875          166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD  245 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  245 (480)
                      ++.+.+++.++++++..++++.  +.....+|.+++..|+ +++|.++|+++.....    .+... .+..++.++.++|
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~----~p~~~-~~~~La~ll~~~g  384 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGE-FIEAADAFKNVAACKE----QLDAN-DLAMAADAFDQAG  384 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhc----CCCHH-HHHHHHHHHHHcC
Confidence            7888899999888887443321  3678899999999999 9999999996443321    12122 2448899999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhccC
Q psy875          246 KFTELEQIKTELKSLEEKLDLN  267 (480)
Q Consensus       246 ~~~~A~~~~~~~~~l~~~~~~~  267 (480)
                      +.++|.++++++..+.-.+...
T Consensus       385 ~~~~A~~~~~~~l~~~~~~~~~  406 (409)
T TIGR00540       385 DKAEAAAMRQDSLGLMLAIQDN  406 (409)
T ss_pred             CHHHHHHHHHHHHHHHhccccc
Confidence            9999999999998877665543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0624|consensus

Probab=99.23  E-value=5e-09  Score=92.39  Aligned_cols=208  Identities=11%  Similarity=0.080  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +.-++.+|.-+...|++..|+..|..|++.    .|....+++..|.+|... |.-.-|+.-+.+.+++.+      ...
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVlelKp------DF~  106 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLELKP------DFM  106 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhh-cCCccchhhHHHHHhcCc------cHH
Confidence            455788999999999999999999999999    788888899999996666 999999999999998743      345


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-------------HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-------------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-------------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      -+-...|.+++++|++++|+.-|...++..+....             ...+......+...|++..|+++....+++  
T Consensus       107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--  184 (504)
T KOG0624|consen  107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--  184 (504)
T ss_pred             HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--
Confidence            56678899999999999999999999977764211             122334456667779999999999999998  


Q ss_pred             cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH------------
Q psy875          184 RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE------------  251 (480)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------------  251 (480)
                        .+.-+..+...+.+|...|+ ..+|+.-++.+-++..      ...+.++.++.++...|+.+.++            
T Consensus       185 --~~Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~------DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd  255 (504)
T KOG0624|consen  185 --QPWDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQ------DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD  255 (504)
T ss_pred             --CcchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccc------cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence              67778888899999999999 9999999988876632      22234444555555555544443            


Q ss_pred             -----HHHHHHHHHHHhhcc
Q psy875          252 -----QIKTELKSLEEKLDL  266 (480)
Q Consensus       252 -----~~~~~~~~l~~~~~~  266 (480)
                           ..|++..++.+++.+
T Consensus       256 HK~Cf~~YKklkKv~K~les  275 (504)
T KOG0624|consen  256 HKLCFPFYKKLKKVVKSLES  275 (504)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence                 455555566666655

>KOG0550|consensus

Probab=99.23  E-value=3.6e-10  Score=101.89  Aligned_cols=178  Identities=19%  Similarity=0.076  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc--
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD--  112 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~--  112 (480)
                      ....+....+.++...|++++|++.--..+++    .+....++...|.+++.. .+.+.|+.+|++++.+.+...+.  
T Consensus       167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~-~~~~ka~~hf~qal~ldpdh~~sk~  241 (486)
T KOG0550|consen  167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYN-DNADKAINHFQQALRLDPDHQKSKS  241 (486)
T ss_pred             hhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhcccccccc-cchHHHHHHHhhhhccChhhhhHHh
Confidence            34556677888899999999999988888877    555666777788887776 89999999999999887654433  


Q ss_pred             ----hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc
Q psy875          113 ----KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF  186 (480)
Q Consensus       113 ----~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~  186 (480)
                          +........-|.-..+.|+|.+|.++|..++.+.|.  ...+.+|.+.|.+...+|+..+|+.-.++++++    .
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D  317 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----D  317 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----C
Confidence                333456668899999999999999999999999887  455889999999999999999999999999999    7


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      +....++..-|.++..+++ |++|.+.|++++....
T Consensus       318 ~syikall~ra~c~l~le~-~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  318 SSYIKALLRRANCHLALEK-WEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence            8889999999999999999 9999999999987744

>KOG4369|consensus

Probab=99.22  E-value=5.2e-12  Score=125.57  Aligned_cols=132  Identities=32%  Similarity=0.401  Sum_probs=119.9

Q ss_pred             CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875          331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP  410 (480)
Q Consensus       331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~  410 (480)
                      ....+..+.|..||.+||.|+|++|+..|+++..+                |+.|.+||..|+..|+..+|..|+.+.++
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehr----------------dkkgf~plImaatagh~tvV~~llk~ha~  815 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHR----------------DKKGFVPLIMAATAGHITVVQDLLKAHAD  815 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhccccccc----------------ccccchhhhhhcccCchHHHHHHHhhhhh
Confidence            34566778899999999999999999999998875                45699999999999999999999999999


Q ss_pred             CCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          411 VKV-QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       411 ~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +.. .|..+.|+|-+||..|+.++|++|+.+|++-.  .++-...|||.+|...|..+++..|+.+|+.||
T Consensus       816 veaQsdrtkdt~lSlacsggr~~vvelLl~~ganke--hrnvsDytPlsla~Sggy~~iI~~llS~GseIn  884 (2131)
T KOG4369|consen  816 VEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE--HRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN  884 (2131)
T ss_pred             hhhhcccccCceEEEecCCCcchHHHHHHHhhcccc--ccchhhcCchhhhcCcchHHHHHHHhhcccccc
Confidence            865 47889999999999999999999999998777  567788999999999999999999999998875

>KOG0550|consensus

Probab=99.22  E-value=4.1e-10  Score=101.52  Aligned_cols=217  Identities=13%  Similarity=0.108  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC---
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD---  111 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~---  111 (480)
                      .++.-....|..++....|..|+..|..|+++    .++.+..|.+.+.. ++.+++|++|.-..++.+++...-..   
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~-~m~~~~~~~a~~dar~~~r~kd~~~k~~~  121 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAAT-LMMLGRFEEALGDARQSVRLKDGFSKGQL  121 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHH-HHHHHhHhhcccchhhheecCCCcccccc
Confidence            44555666777777788888888888888877    33335555555555 44446666665555444433211000   


Q ss_pred             -------------------------------------------ch----------------------------------H
Q psy875          112 -------------------------------------------DK----------------------------------L  114 (480)
Q Consensus       112 -------------------------------------------~~----------------------------------~  114 (480)
                                                                 .+                                  .
T Consensus       122 r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~  201 (486)
T KOG0550|consen  122 REGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT  201 (486)
T ss_pred             chhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc
Confidence                                                       00                                  0


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH----------HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL----------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      -..+....|.++...++.++|+..|++++...|....          ...+-.-|+-.++.|+|.+|.+.|.++|.+-+.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~  281 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS  281 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence            0112224556666677788888888888877776322          233444588889999999999999999999888


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      +....+..|.+.|.+...+|+ ..+|+.-++.|+++      .+....++...|.++..++++++|.+.++++.++..+
T Consensus       282 n~~~naklY~nra~v~~rLgr-l~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  282 NKKTNAKLYGNRALVNIRLGR-LREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             ccchhHHHHHHhHhhhcccCC-chhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            878889999999999999999 99999999999998      7888999999999999999999999999999886544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.21  E-value=2.7e-09  Score=111.52  Aligned_cols=204  Identities=14%  Similarity=0.114  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ..+.++..+|.++...|++++|++.|+++++.    .|....++..+|.+ +...|++++|+..+++++...+..     
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~-l~~~g~~~eA~~~l~~~l~~~P~~-----  116 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILT-LADAGQYDEALVKAKQLVSGAPDK-----  116 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence            34567999999999999999999999999998    55555667788988 555599999999999999874432     


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHH------------------
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN------------------  176 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~------------------  176 (480)
                       .. +..+|.++...|++++|+..+++++...|..  ..++..+|.++...++.++|+..++                  
T Consensus       117 -~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~--~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~  192 (765)
T PRK10049        117 -AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT--QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA  192 (765)
T ss_pred             -HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence             23 6788999999999999999999999877654  3555667777777777766665554                  


Q ss_pred             ----------------------------HHHhhhhcCc---HHHHHHHHH-HHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          177 ----------------------------KELRLHARNF---PEAVKTLGE-IGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       177 ----------------------------~al~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                                                  +.++..+.++   +....+... ++ ++...|+ +++|+..|+++++..   
T Consensus       193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~-~~eA~~~~~~ll~~~---  267 (765)
T PRK10049        193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDR-YKDVISEYQRLKAEG---  267 (765)
T ss_pred             HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhh-HHHHHHHHHHhhccC---
Confidence                                        2222211111   112222222 34 3457788 999999999976551   


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          225 KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       225 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ...+..  +...++.+|..+|++++|+..++++..
T Consensus       268 ~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~  300 (765)
T PRK10049        268 QIIPPW--AQRWVASAYLKLHQPEKAQSILTELFY  300 (765)
T ss_pred             CCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence            111222  223368899999999999999998764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.21  E-value=2.8e-10  Score=92.60  Aligned_cols=109  Identities=13%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875           96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF  175 (480)
Q Consensus        96 ~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~  175 (480)
                      ..++++|+++.+.         .+..+|.++...|++++|+.+|++++...+  ....++.++|.++...|++++|+..|
T Consensus        13 ~~~~~~al~~~p~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y   81 (144)
T PRK15359         13 EDILKQLLSVDPE---------TVYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFY   81 (144)
T ss_pred             HHHHHHHHHcCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3567888877432         145689999999999999999999997764  45688999999999999999999999


Q ss_pred             HHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       176 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ++++.+    .|..+..++++|.++...|+ +++|+..|++++.+
T Consensus        82 ~~Al~l----~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~  121 (144)
T PRK15359         82 GHALML----DASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHhc----CCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence            999998    45567889999999999999 99999999999987

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.20  E-value=4.3e-10  Score=91.51  Aligned_cols=126  Identities=11%  Similarity=-0.000  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH
Q psy875           57 VDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC  136 (480)
Q Consensus        57 ~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~  136 (480)
                      ..++++++++    .|..   +...|.+ ....|++++|+.+|++++.+.+.      ...++.++|.++..+|++++|+
T Consensus        13 ~~~~~~al~~----~p~~---~~~~g~~-~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~   78 (144)
T PRK15359         13 EDILKQLLSV----DPET---VYASGYA-SWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAI   78 (144)
T ss_pred             HHHHHHHHHc----CHHH---HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHH
Confidence            3577888887    4443   4467888 44559999999999999877432      3677889999999999999999


Q ss_pred             HHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH
Q psy875          137 SELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL  202 (480)
Q Consensus       137 ~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~  202 (480)
                      ..|++++...+  ....+++++|.++..+|++++|+..|++++++.+    ..+..+.+.|.+...
T Consensus        79 ~~y~~Al~l~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p----~~~~~~~~~~~~~~~  138 (144)
T PRK15359         79 NFYGHALMLDA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY----ADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHH
Confidence            99999997664  4558899999999999999999999999999843    334555555555443

>PLN02789 farnesyltranstransferase

Probab=99.20  E-value=4.1e-09  Score=97.04  Aligned_cols=202  Identities=11%  Similarity=0.013  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhcCCCc
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      +....++-.+-.++...+.+++|+..+.+++++    .|....+|...|.+ ...++ ++++++..+.+++...++.   
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~i-L~~L~~~l~eeL~~~~~~i~~npkn---  105 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLC-LEALDADLEEELDFAEDVAEDNPKN---  105 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHH-HHHcchhHHHHHHHHHHHHHHCCcc---
Confidence            344556656666677889999999999999999    88888899999999 45556 6899999999999875433   


Q ss_pred             hHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNL--DSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV  190 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  190 (480)
                         ..++...+.++..+|+.  ++++.++.+++...++  ...++...+.++...|+|++|++++.++++.    .+...
T Consensus       106 ---yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk--Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~----d~~N~  176 (320)
T PLN02789        106 ---YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK--NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE----DVRNN  176 (320)
T ss_pred             ---hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCch
Confidence               34678888888888874  7889999999977654  4578899999999999999999999999998    34446


Q ss_pred             HHHHHHHHHHHHh---CCch----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q psy875          191 KTLGEIGDLYELQ---EKPF----ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTELKS  259 (480)
Q Consensus       191 ~~~~~l~~~~~~~---~~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  259 (480)
                      .+|...+.+....   |. +    ++++.+..+++.+      .+.-..++..++.++..    +++..+|.....++..
T Consensus       177 sAW~~R~~vl~~~~~l~~-~~~~~e~el~y~~~aI~~------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~  249 (320)
T PLN02789        177 SAWNQRYFVITRSPLLGG-LEAMRDSELKYTIDAILA------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS  249 (320)
T ss_pred             hHHHHHHHHHHhcccccc-ccccHHHHHHHHHHHHHh------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence            7888888887765   33 3    4677888888877      33444566677777776    3455667666655433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.18  E-value=2.4e-09  Score=103.18  Aligned_cols=196  Identities=9%  Similarity=0.051  Sum_probs=129.5

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC------------
Q psy875           44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD------------  111 (480)
Q Consensus        44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~------------  111 (480)
                      +.++...|++++|+..+++..+.    .|....++..++.+| ...|++++|+..+.+..+.....+.            
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~----~P~~~~al~ll~~~~-~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~  234 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEV----APRHPEVLRLAEQAY-IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG  234 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            56666666666666666666666    344444555666663 3347777777555544422111000            


Q ss_pred             ------------------------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc
Q psy875          112 ------------------------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ  167 (480)
Q Consensus       112 ------------------------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~  167 (480)
                                              .+....+...++..+...|+.++|...+++++...+++.....+.     ....++
T Consensus       235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~-----~l~~~~  309 (398)
T PRK10747        235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIP-----RLKTNN  309 (398)
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHh-----hccCCC
Confidence                                    011122344667777888888888888887776444333222221     123477


Q ss_pred             HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875          168 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       168 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  247 (480)
                      ++++++.+++.++.    +|..+..+..+|.++...++ +++|.++|+++++.      .|. ...+..++.++.++|+.
T Consensus       310 ~~~al~~~e~~lk~----~P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~------~P~-~~~~~~La~~~~~~g~~  377 (398)
T PRK10747        310 PEQLEKVLRQQIKQ----HGDTPLLWSTLGQLLMKHGE-WQEASLAFRAALKQ------RPD-AYDYAWLADALDRLHKP  377 (398)
T ss_pred             hHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHHcCCH
Confidence            88888888777766    44556788899999999999 99999999999876      222 23456899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy875          248 TELEQIKTELKSLE  261 (480)
Q Consensus       248 ~~A~~~~~~~~~l~  261 (480)
                      ++|.++++++..+.
T Consensus       378 ~~A~~~~~~~l~~~  391 (398)
T PRK10747        378 EEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887754

>KOG1174|consensus

Probab=99.16  E-value=1.1e-09  Score=98.79  Aligned_cols=199  Identities=14%  Similarity=0.122  Sum_probs=156.2

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      .-++.-|...+..++|..|+.+-.|++..    .+....++..-|.+ ....++.++|.-.|+.|..+.      +.-..
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~l-L~~~~R~~~A~IaFR~Aq~La------p~rL~  369 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRL-LIALERHTQAVIAFRTAQMLA------PYRLE  369 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHH-HHhccchHHHHHHHHHHHhcc------hhhHH
Confidence            34566677788888999999999999988    55556667777888 777799999999999998774      33467


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH-HHHHhh-ccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA-QTYKDN-KQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la-~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      +|..|-..|...|++.+|...-..+....  +..+.++..+| .++... ---++|.+++++++++    .|....+-..
T Consensus       370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~----~P~Y~~AV~~  443 (564)
T KOG1174|consen  370 IYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI----NPIYTPAVNL  443 (564)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc----CCccHHHHHH
Confidence            88899999999999999998888766444  33345566665 444433 3357899999999988    6667777888


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      +|.++...|+ +++++..+++++....       -......||++....+.+++|+.+|..+.++.
T Consensus       444 ~AEL~~~Eg~-~~D~i~LLe~~L~~~~-------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  444 IAELCQVEGP-TKDIIKLLEKHLIIFP-------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHhhCc-cchHHHHHHHHHhhcc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            9999999999 9999999999987632       12345689999999999999999999998764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.15  E-value=1.7e-08  Score=96.43  Aligned_cols=224  Identities=11%  Similarity=-0.021  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ....+...+|.++...|++++|+..+++++++    .+.....+..+|.+|+.. |++++|+.++++++...+.  ++..
T Consensus       112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~--~~~~  184 (355)
T cd05804         112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDC--SSML  184 (355)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCC--Ccch
Confidence            33456667778888888888888888888887    444456667778885444 8888888888888876543  1222


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHH--HHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYI--SLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEA  189 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~--~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~  189 (480)
                      ....+..+|.++...|++++|+..|++++...+. ......+.  .+...+...|....+..+ +........  ..+..
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~  263 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGL  263 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccc
Confidence            3345667888888888888888888877644431 11111111  112222222322222222 111111000  00111


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ---NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      .......+.++...|+ .++|...+.......+.   .+.......+....+.++..+|++++|...+.++..+...+++
T Consensus       264 ~~~~~~~a~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg  342 (355)
T cd05804         264 AFNDLHAALALAGAGD-KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG  342 (355)
T ss_pred             hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            2222357888888999 99999999988877766   4445556677778899999999999999999999999988877


Q ss_pred             C
Q psy875          267 N  267 (480)
Q Consensus       267 ~  267 (480)
                      .
T Consensus       343 s  343 (355)
T cd05804         343 S  343 (355)
T ss_pred             c
Confidence            3

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.13  E-value=4.2e-09  Score=90.48  Aligned_cols=121  Identities=19%  Similarity=0.171  Sum_probs=55.9

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH-HHhhcc-
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT-YKDNKQ-  167 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y~~~~~-  167 (480)
                      ++.++++..++++++..+..      ...+..+|.+|...|++++|+..|++++...++  ...++..+|.+ |...|+ 
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--~~~~~~~lA~aL~~~~g~~  124 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--NAELYAALATVLYYQAGQH  124 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCC
Confidence            33444444454444442211      234445555555555555555555555544322  22444445543 234344 


Q ss_pred             -HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          168 -YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       168 -~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                       +++|...++++++.    .+....++..+|.+++..|+ |++|+.+++++++....
T Consensus       125 ~~~~A~~~l~~al~~----dP~~~~al~~LA~~~~~~g~-~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        125 MTPQTREMIDKALAL----DANEVTALMLLASDAFMQAD-YAQAIELWQKVLDLNSP  176 (198)
T ss_pred             CcHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence             25555555555554    22333444555555555555 55555555555544433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.10  E-value=9.3e-09  Score=106.03  Aligned_cols=199  Identities=11%  Similarity=0.073  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ..+...+..+.+.++.|+++.|+..|+++++.    .|........+..+ +...|++++|+.++++++  .+.    +.
T Consensus        32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~----~P~~~~av~dll~l-~~~~G~~~~A~~~~eka~--~p~----n~  100 (822)
T PRK14574         32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKA----GPLQSGQVDDWLQI-AGWAGRDQEVIDVYERYQ--SSM----NI  100 (822)
T ss_pred             cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CccchhhHHHHHHH-HHHcCCcHHHHHHHHHhc--cCC----CC
Confidence            35667888999999999999999999999998    33332111266666 344499999999999998  111    11


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ....+..+|.+|..+|+|++|++.|++++...|..  ..++..++.+|.+.+++++|++.++++......     ...+.
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~l  173 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNYM  173 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHHH
Confidence            13345566889999999999999999999888765  466678899999999999999999998877332     22234


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      .++.++...++ +.+|+..++++++.      .|....++..+..+....|-...|.+..++.-
T Consensus       174 ~layL~~~~~~-~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p  230 (822)
T PRK14574        174 TLSYLNRATDR-NYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPALRLAKENP  230 (822)
T ss_pred             HHHHHHHhcch-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence            45556655677 76799999999887      45556667777788888898888887776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.09  E-value=1e-08  Score=103.81  Aligned_cols=166  Identities=10%  Similarity=0.030  Sum_probs=128.9

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      -.+-.+....+...++...+-+++.+ ..+.+....++.++|.+ ....|.+++|+..++.++++.+..      ..+..
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~La~i-~~~~g~~~ea~~~l~~~~~~~Pd~------~~a~~  124 (694)
T PRK15179         53 QQARQVLERHAAVHKPAAALPELLDY-VRRYPHTELFQVLVARA-LEAAHRSDEGLAVWRGIHQRFPDS------SEAFI  124 (694)
T ss_pred             HHHHHHHHHhhhhcchHhhHHHHHHH-HHhccccHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhhCCCc------HHHHH
Confidence            33444555556666666666666666 55566667888888888 777799999999999888886533      56777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                      +++.+..+++++++|+..+++++...+  +.+..++.+|.++.++|+|++|+.+|++++.-    .+....++..+|.++
T Consensus       125 ~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----~p~~~~~~~~~a~~l  198 (694)
T PRK15179        125 LMLRGVKRQQGIEAGRAEIELYFSGGS--SSAREILLEAKSWDEIGQSEQADACFERLSRQ----HPEFENGYVGWAQSL  198 (694)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCcHHHHHHHHHHH
Confidence            888899999999999999998886664  44577888899999999999999999988873    345567888889999


Q ss_pred             HHhCCchHHHHHHHHHHHHHH
Q psy875          201 ELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       201 ~~~~~~~~~A~~~~~~al~~~  221 (480)
                      ...|+ .++|...|++|++..
T Consensus       199 ~~~G~-~~~A~~~~~~a~~~~  218 (694)
T PRK15179        199 TRRGA-LWRARDVLQAGLDAI  218 (694)
T ss_pred             HHcCC-HHHHHHHHHHHHHhh
Confidence            99999 899999999988764

>PLN02789 farnesyltranstransferase

Probab=99.09  E-value=1.7e-08  Score=92.94  Aligned_cols=190  Identities=11%  Similarity=0.006  Sum_probs=145.0

Q ss_pred             hHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHhhh
Q psy875           31 DLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSF--EIVQSTHEKALDLAR  107 (480)
Q Consensus        31 ~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~--~~A~~~~~kAl~~~~  107 (480)
                      ...+.-..++...|.++...| ++++++.++.++++.    .+....+|+..+.+ ...++..  ++++.++.++++...
T Consensus        65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----npknyqaW~~R~~~-l~~l~~~~~~~el~~~~kal~~dp  139 (320)
T PLN02789         65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED----NPKNYQIWHHRRWL-AEKLGPDAANKELEFTRKILSLDA  139 (320)
T ss_pred             HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----CCcchHHhHHHHHH-HHHcCchhhHHHHHHHHHHHHhCc
Confidence            344455678889999998888 689999999999998    66667778888888 4444653  778999999998754


Q ss_pred             cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh---ccH----HHHHHHHHHHHh
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN---KQY----NLAVDYFNKELR  180 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~---~~~----~~A~~~~~~al~  180 (480)
                      +.      ..++...+.++..+|++++|++++.+++...+..  ..+++..+.+....   |.+    +++++|..+++.
T Consensus       140 kN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~  211 (320)
T PLN02789        140 KN------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL  211 (320)
T ss_pred             cc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence            33      5688899999999999999999999999877554  36777888777665   333    578999999999


Q ss_pred             hhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875          181 LHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH  244 (480)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  244 (480)
                      +    .|....+|..++.++..    .++ +.+|...+.+++..      .+.-..++..|+++|...
T Consensus       212 ~----~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~------~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        212 A----NPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSK------DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             h----CCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcc------cCCcHHHHHHHHHHHHhh
Confidence            8    44446788889998887    455 67788888776652      223345677788888753

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.08  E-value=6.7e-10  Score=80.19  Aligned_cols=72  Identities=31%  Similarity=0.589  Sum_probs=51.5

Q ss_pred             cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      .++.++.++|.+|..+|+|++|+++|++++++...   +++..+.++.++|.++..+|+ +++|++++++++++.+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhc
Confidence            45667777788888778888888888877777332   234557777788888888888 8888888888777754

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.08  E-value=5.8e-09  Score=89.64  Aligned_cols=121  Identities=12%  Similarity=0.133  Sum_probs=104.4

Q ss_pred             hcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH-HHhCCc
Q psy875          128 KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY-ELQEKP  206 (480)
Q Consensus       128 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~~~~  206 (480)
                      ..++.++++..+++++...+  .....+..+|.+|...|++++|+..|++++++    .+....++..+|.++ ...|+ 
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~-  123 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQ-  123 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCC-
Confidence            36788999999999997664  44578999999999999999999999999999    455578889999975 56666 


Q ss_pred             h--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          207 F--ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       207 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      +  ++|...++++++.      .+....++..+|..+..+|++++|..+++++.++.
T Consensus       124 ~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        124 HMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             CCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4  9999999999988      45566789999999999999999999999998765

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.08  E-value=3.1e-08  Score=85.82  Aligned_cols=169  Identities=18%  Similarity=0.161  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      .....++..|..++..|+|.+|++.|++.+.. -+..+....+...+|.+|+.. |+|+.|+..+++-+...+..   +.
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~-~~y~~A~~~~~~fi~~yP~~---~~   77 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQ-GDYEEAIAAYERFIKLYPNS---PK   77 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHH-TT----TT
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCC---cc
Confidence            34678899999999999999999999999988 566677778889999997666 99999999999999887654   44


Q ss_pred             HHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhcccccc---------------cHHHHHHHHHHHHHhhccH
Q psy875          115 IRTVMRSIKKLYKKH-----------DNLDSACSELHTVLSSDLCK---------------DLASCYISLAQTYKDNKQY  168 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~-----------~~~~~A~~~~~~~l~~~~~~---------------~~~~~~~~la~~y~~~~~~  168 (480)
                      ...++..+|.++..+           +...+|+..|+..+...|+.               .++.--..+|..|.+.|.|
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y  157 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY  157 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            556777777776544           34568999999888777662               2233445579999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875          169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV  210 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  210 (480)
                      ..|+..++..++..++ .+....++..++..|..+|. .+.|
T Consensus       158 ~aA~~r~~~v~~~yp~-t~~~~~al~~l~~~y~~l~~-~~~a  197 (203)
T PF13525_consen  158 KAAIIRFQYVIENYPD-TPAAEEALARLAEAYYKLGL-KQAA  197 (203)
T ss_dssp             HHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred             HHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhCC-hHHH
Confidence            9999999999998776 45566789999999999999 6643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.08  E-value=5.1e-09  Score=105.92  Aligned_cols=140  Identities=9%  Similarity=0.048  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .|...+.++++||.+....|.+++|...++.++++    .|+...+..+++.+ ..+.+.+++|+..+++++...+..  
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~-L~~~~~~eeA~~~~~~~l~~~p~~--  153 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRG-VKRQQGIEAGRAEIELYFSGGSSS--  153 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHH-HHHhccHHHHHHHHHHHhhcCCCC--
Confidence            34456889999999999999999999999999999    78888888999999 666699999999999999885543  


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                          +.++..+|.++..+|++++|+.+|++++.  +.+....++.++|..+...|+.++|...|+++++....
T Consensus       154 ----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        154 ----AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             ----HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence                67788999999999999999999999997  44566789999999999999999999999999998554

>KOG2076|consensus

Probab=99.04  E-value=6.2e-08  Score=95.97  Aligned_cols=205  Identities=12%  Similarity=0.095  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      .+.+...|+..+.+|++++|++.+.++++.    .+....+|..+|.+ +.+.|+.+++......|-.+.++..      
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----dp~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~------  207 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ----DPRNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDY------  207 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CccchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCCh------
Confidence            456777788888889999999999999999    77778889999999 5555999999999988887755432      


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH-HHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE-AVKTLGE  195 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~  195 (480)
                      ..+..++....++|.+.+|.-||.++++..|..  ...+...+.+|.++|++..|...|.+.+...+..... ....-..
T Consensus       208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~  285 (895)
T KOG2076|consen  208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSN--WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR  285 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence            456788999999999999999999999877654  4677889999999999999999999999985532222 2233345


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .+..+...++ -+.|.+.++.++..-    ....-...+..++.++.+...++.|.........
T Consensus       286 ~~~~~~~~~~-~e~a~~~le~~~s~~----~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~  344 (895)
T KOG2076|consen  286 VAHYFITHNE-RERAAKALEGALSKE----KDEASLEDLNILAELFLKNKQSDKALMKIVDDRN  344 (895)
T ss_pred             HHHHHHHhhH-HHHHHHHHHHHHhhc----cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence            5778888888 688999998888721    1222234455788999999999999877655444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.04  E-value=9.1e-09  Score=86.58  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQY  168 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~  168 (480)
                      ..|..+...+.+-++    .......+.++.++|.++..+|++++|+..|++++...+++ ..+.++.++|.+|...|++
T Consensus        13 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033         13 KTFTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cccccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            345555555533322    22334467888999999999999999999999998776543 3467899999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH-------HhCCchHHHHHHHHHHHHHHHHc
Q psy875          169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE-------LQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                      ++|+.++++++.+.+.    ....+.++|.++.       .+|+ ++.|...+.+++...++.
T Consensus        89 ~eA~~~~~~Al~~~~~----~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033         89 TKALEYYFQALERNPF----LPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHH
Confidence            9999999999988333    2344445555555       8999 999999999998876543

>KOG0553|consensus

Probab=99.03  E-value=4.5e-09  Score=91.62  Aligned_cols=102  Identities=24%  Similarity=0.311  Sum_probs=93.5

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      ...++.-+.+-|.-..+.++|++|+..|.+|++..|.  -+..|.+.|.+|.++|.|+.|++-++.|+.+    .+....
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----Dp~ysk  150 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSI----DPHYSK  150 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhc----ChHHHH
Confidence            4556677788999999999999999999999987754  4577999999999999999999999999999    889999


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +|..||.+|..+|+ |++|++.|++|+++
T Consensus       151 ay~RLG~A~~~~gk-~~~A~~aykKaLel  178 (304)
T KOG0553|consen  151 AYGRLGLAYLALGK-YEEAIEAYKKALEL  178 (304)
T ss_pred             HHHHHHHHHHccCc-HHHHHHHHHhhhcc
Confidence            99999999999999 99999999999988

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.03  E-value=5.9e-08  Score=86.14  Aligned_cols=173  Identities=13%  Similarity=0.067  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      .....+..|..+...|+|++|++.|++.+.. .+..+....+...+|.+|+.. ++|++|+.++++.++..+..   +..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~---~~~  105 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTH---PNI  105 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCC---Cch
Confidence            4556888999999999999999999999998 555666667788999996666 99999999999999987654   455


Q ss_pred             HHHHHHHHHHHHhcC---------------C---hHHHHHHHHHHhccccccc---------------HHHHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHD---------------N---LDSACSELHTVLSSDLCKD---------------LASCYISLAQTY  162 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~---------------~---~~~A~~~~~~~l~~~~~~~---------------~~~~~~~la~~y  162 (480)
                      ..+++.+|.++..++               +   -.+|+..|++.+...|+..               ++.--..+|..|
T Consensus       106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y  185 (243)
T PRK10866        106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYY  185 (243)
T ss_pred             HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788887764443               1   3468888888887777622               233344579999


Q ss_pred             HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875          163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHE  215 (480)
Q Consensus       163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  215 (480)
                      .+.|.|..|+.-++..++-.++ .+....++..++.+|...|. .++|..+..
T Consensus       186 ~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~-~~~a~~~~~  236 (243)
T PRK10866        186 TKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQL-NAQADKVAK  236 (243)
T ss_pred             HHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCC-hHHHHHHHH
Confidence            9999999999999999988766 45577889999999999999 888876553

>TIGR00540 hemY_coli hemY protein

Probab=99.01  E-value=1.2e-07  Score=92.02  Aligned_cols=28  Identities=21%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          232 TVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .....+|.++.+.|++++|.++++++..
T Consensus       336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a  363 (409)
T TIGR00540       336 CINRALGQLLMKHGEFIEAADAFKNVAA  363 (409)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence            5666899999999999999999996444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162|consensus

Probab=99.00  E-value=1e-07  Score=92.87  Aligned_cols=212  Identities=22%  Similarity=0.188  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-------
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK-------  110 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~-------  110 (480)
                      .+.++++.-|..+++.+.|+.+.++++++   +..+.+.+|..++.+...+ +++..|+....-|++....+.       
T Consensus       479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l---~~~~~~~~whLLALvlSa~-kr~~~Al~vvd~al~E~~~N~~l~~~~~  554 (799)
T KOG4162|consen  479 LVIFYLALQYAEQRQLTSALDYAREALAL---NRGDSAKAWHLLALVLSAQ-KRLKEALDVVDAALEEFGDNHVLMDGKI  554 (799)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence            67899999999999999999999999998   2334566778888884444 888888888877776544300       


Q ss_pred             -------Cc-----------------------------------------------------------------------
Q psy875          111 -------DD-----------------------------------------------------------------------  112 (480)
Q Consensus       111 -------~~-----------------------------------------------------------------------  112 (480)
                             +.                                                                       
T Consensus       555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp  634 (799)
T KOG4162|consen  555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP  634 (799)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence                   00                                                                       


Q ss_pred             ------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          113 ------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       113 ------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                                  ......+...+..+...+..++|..++.++-.+.  +..+..|+..|.++...|++.+|.+.|..|+.
T Consensus       635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence                        0000111255666777777777777777776555  45567888899999999999999999999999


Q ss_pred             hhhcCcHHHHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVS--THEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      +    .|....+...+|.++.+.|+ ..-|..  .+..++++      .+...++++.+|.++.++|+.+.|-+.|+-+.
T Consensus       713 l----dP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  713 L----DPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRL------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             c----CCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            8    55556778889999999998 777777  88888887      77788899999999999999999999999999


Q ss_pred             HHHHhhcc
Q psy875          259 SLEEKLDL  266 (480)
Q Consensus       259 ~l~~~~~~  266 (480)
                      ++.++...
T Consensus       782 qLe~S~PV  789 (799)
T KOG4162|consen  782 QLEESNPV  789 (799)
T ss_pred             hhccCCCc
Confidence            98776433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.00  E-value=4e-08  Score=100.41  Aligned_cols=143  Identities=16%  Similarity=0.178  Sum_probs=118.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           29 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        29 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      ..+..+....++..|...|...+++++|+..+..+++.    .|.....|+..|.+|+.. +++..|...  .++.+...
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----~P~~i~~yy~~G~l~~q~-~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE----HKKSISALYISGILSLSR-RPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCcceehHHHHHHHHHhh-cchhhhhhh--hhhhhccc
Confidence            34455567788999999999999999999999999998    788888888999985555 888888665  66666554


Q ss_pred             CCCc-------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875          109 NKDD-------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF  175 (480)
Q Consensus       109 ~~~~-------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~  175 (480)
                      ..+.             .....++..+|.+|.++|++++|...|++++...  +.-+.+++++|..|... +.++|++++
T Consensus        96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~  172 (906)
T PRK14720         96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYL  172 (906)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            4321             2222577899999999999999999999999887  45568899999999999 999999999


Q ss_pred             HHHHhh
Q psy875          176 NKELRL  181 (480)
Q Consensus       176 ~~al~~  181 (480)
                      .+|+..
T Consensus       173 ~KAV~~  178 (906)
T PRK14720        173 KKAIYR  178 (906)
T ss_pred             HHHHHH
Confidence            999877

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.00  E-value=1e-07  Score=101.32  Aligned_cols=131  Identities=9%  Similarity=0.087  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      +|..+...|.+.|++++|+..|.+.....-.|+ ..+|..+...|.+.|++++|.+++++..+.-   ......+|..+.
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G---~~pd~~tynsLI  691 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG---IKLGTVSYSSLM  691 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHH
Confidence            445555555555555555555555443322222 2345555566666666666666665554331   111134566666


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      ..|.+.|+ +++|...|++..+.    +-.+ -...+..|...|.+.|++++|.++++++.
T Consensus       692 ~ay~k~G~-~eeA~~lf~eM~~~----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        692 GACSNAKN-WKKALELYEDIKSI----KLRP-TVSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHhCCC-HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            66667777 77776666654321    1111 12446666777777777777777776654

>KOG0553|consensus

Probab=98.99  E-value=1.3e-08  Score=88.77  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      ..+-.-|.- .+..++|.+|+..|.+|+.+.+..      +..|.+.+.+|.++|+|+.|++-++.++.++  +....+|
T Consensus        82 E~LK~eGN~-~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay  152 (304)
T KOG0553|consen   82 ESLKNEGNK-LMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAY  152 (304)
T ss_pred             HHHHHHHHH-HHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHH
Confidence            333444666 555588999999999998885433      5677888899999999999999998888776  4566888


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE  204 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~  204 (480)
                      ..||.+|..+|+|++|++.|++++++-+.+    .....+|..+-.+++
T Consensus       153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~N----e~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  153 GRLGLAYLALGKYEEAIEAYKKALELDPDN----ESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHHHHHHccCcHHHHHHHHHhhhccCCCc----HHHHHHHHHHHHHhc
Confidence            889999999999999999999998884433    344555554444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.98  E-value=8.8e-09  Score=74.28  Aligned_cols=77  Identities=18%  Similarity=0.315  Sum_probs=68.0

Q ss_pred             cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      +|..+.++.++|.+|..+|+ |++|+.+|++++++.+..++.. ....++.++|.++..+|++++|+++++++.++.++
T Consensus         1 H~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            46778899999999999999 9999999999999977777554 56999999999999999999999999999988653

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.98  E-value=1.4e-07  Score=91.09  Aligned_cols=192  Identities=11%  Similarity=0.069  Sum_probs=100.1

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875           44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAV-KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSI  122 (480)
Q Consensus        44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l  122 (480)
                      +.+...+|+++.|..++.++.+.    .++.. ......+.++ ...|++++|+..+++..+..+..      ..++..+
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~-l~~g~~~~Al~~l~~~~~~~P~~------~~al~ll  193 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAEL----ADNDQLPVEITRVRIQ-LARNENHAARHGVDKLLEVAPRH------PEVLRLA  193 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCC------HHHHHHH
Confidence            44445666666666666666554    22211 1111225553 33366666666666665554322      2344555


Q ss_pred             HHHHHhcCChHHHHHHHHHHhccccc----------------------------------------ccHHHHHHHHHHHH
Q psy875          123 KKLYKKHDNLDSACSELHTVLSSDLC----------------------------------------KDLASCYISLAQTY  162 (480)
Q Consensus       123 ~~~y~~~~~~~~A~~~~~~~l~~~~~----------------------------------------~~~~~~~~~la~~y  162 (480)
                      +.+|...|++++|+..+.+..+....                                        +....+...+|..+
T Consensus       194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l  273 (398)
T PRK10747        194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL  273 (398)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence            66666666666666544422211000                                        11122344445555


Q ss_pred             HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875          163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK  242 (480)
Q Consensus       163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  242 (480)
                      ...|+.++|...++++++.  ...+.....+   +.  ...++ +++++..+++.++.      .|.-...+..+|.++.
T Consensus       274 ~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~---~~--l~~~~-~~~al~~~e~~lk~------~P~~~~l~l~lgrl~~  339 (398)
T PRK10747        274 IECDDHDTAQQIILDGLKR--QYDERLVLLI---PR--LKTNN-PEQLEKVLRQQIKQ------HGDTPLLWSTLGQLLM  339 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCCHHHHHHH---hh--ccCCC-hHHHHHHHHHHHhh------CCCCHHHHHHHHHHHH
Confidence            5666666666666555552  1111111111   11  12244 55555555554422      2333456778899999


Q ss_pred             HcCChHHHHHHHHHHHHH
Q psy875          243 KHDKFTELEQIKTELKSL  260 (480)
Q Consensus       243 ~~g~~~~A~~~~~~~~~l  260 (480)
                      ..+++++|..+++++.+.
T Consensus       340 ~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        340 KHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             HCCCHHHHHHHHHHHHhc
Confidence            999999999999998775

>KOG0624|consensus

Probab=98.97  E-value=1.4e-07  Score=83.39  Aligned_cols=205  Identities=14%  Similarity=0.147  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      +........++..|++..|+++....+++    .+..+..+...+.+| ...|+...|+.-++.|-++....      ..
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~Wda~l~~~Rakc~-i~~~e~k~AI~Dlk~askLs~Dn------Te  224 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEI----QPWDASLRQARAKCY-IAEGEPKKAIHDLKQASKLSQDN------TE  224 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhc----CcchhHHHHHHHHHH-HhcCcHHHHHHHHHHHHhccccc------hH
Confidence            34455556677789999999999999999    888888888889995 44499999999999988876543      34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH-HHHHHH---------HHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-SCYISL---------AQTYKDNKQYNLAVDYFNKELRLHARNFP  187 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~~~l---------a~~y~~~~~~~~A~~~~~~al~~~~~~~~  187 (480)
                      .++.++.+++..|+.+.++...++.++..|+...- ..|-.+         +.-..+.++|.++++-.++.++.-+...+
T Consensus       225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~  304 (504)
T KOG0624|consen  225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM  304 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence            57789999999999999999999999888874331 122222         34455678888888888888877444455


Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ........+..++...++ +-+|+..+.+++.+      .+.-..++...+..|..-..|+.|+.-|+.+.++
T Consensus       305 ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  305 IRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDI------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eeeeeeheeeecccccCC-HHHHHHHHHHHHhc------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            556677788999999999 99999999999987      6777889999999999999999999999988764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.96  E-value=5.6e-08  Score=83.24  Aligned_cols=163  Identities=15%  Similarity=0.106  Sum_probs=127.0

Q ss_pred             CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875           71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus        71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      .|....+ .+++..|+.. |+-+.+..+..++.....+   +   ......+|......|+|..|+..++++....+.  
T Consensus        63 ~p~d~~i-~~~a~a~~~~-G~a~~~l~~~~~~~~~~~~---d---~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~--  132 (257)
T COG5010          63 NPEDLSI-AKLATALYLR-GDADSSLAVLQKSAIAYPK---D---RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT--  132 (257)
T ss_pred             CcchHHH-HHHHHHHHhc-ccccchHHHHhhhhccCcc---c---HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC--
Confidence            3444444 6777775555 8888888887776544322   2   223344899999999999999999999876654  


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHH
Q psy875          151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLI  230 (480)
Q Consensus       151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  230 (480)
                      -...++.+|.+|.+.|++++|..-|.+++++...    .+.+..|+|..+.-.|+ ++.|..++..+...      ...-
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----~p~~~nNlgms~~L~gd-~~~A~~lll~a~l~------~~ad  201 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN----EPSIANNLGMSLLLRGD-LEDAETLLLPAYLS------PAAD  201 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC----CchhhhhHHHHHHHcCC-HHHHHHHHHHHHhC------CCCc
Confidence            4478999999999999999999999999999544    35678899999999999 99999999888654      3334


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHH
Q psy875          231 RTVMRSMKKLYKKHDKFTELEQIK  254 (480)
Q Consensus       231 ~~~~~~l~~~~~~~g~~~~A~~~~  254 (480)
                      ..+..+|+.+...+|++++|...-
T Consensus       202 ~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         202 SRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             hHHHHHHHHHHhhcCChHHHHhhc
Confidence            567789999999999999987643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.96  E-value=2e-08  Score=81.17  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=93.6

Q ss_pred             HHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875           98 THEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK  177 (480)
Q Consensus        98 ~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~  177 (480)
                      .+++++...+      ....+...+|..+...|++++|+..+++++...+  ....++..+|.+|..+|++++|+.++++
T Consensus         5 ~~~~~l~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~   76 (135)
T TIGR02552         5 TLKDLLGLDS------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYAL   76 (135)
T ss_pred             hHHHHHcCCh------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566665432      2245678999999999999999999999987654  4457889999999999999999999999


Q ss_pred             HHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          178 ELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       178 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      +++.    .+.....+..+|.++...|+ +++|+..++++++..
T Consensus        77 ~~~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  115 (135)
T TIGR02552        77 AAAL----DPDDPRPYFHAAECLLALGE-PESALKALDLAIEIC  115 (135)
T ss_pred             HHhc----CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc
Confidence            9988    34457788999999999999 999999999998874

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.95  E-value=1e-07  Score=77.87  Aligned_cols=119  Identities=15%  Similarity=0.134  Sum_probs=60.7

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQY  168 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~  168 (480)
                      ++...+...+++...-   .++...-..+...+|.++...|++++|+..|++++...+++.+ ..+...||.++...|+|
T Consensus        25 ~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            4444444444433332   2223333445555566666666666666666655554433322 34455556666666666


Q ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy875          169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKA  217 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  217 (480)
                      ++|+..++...     ..+..+..+..+|.++...|+ +++|...|++|
T Consensus       102 d~Al~~L~~~~-----~~~~~~~~~~~~Gdi~~~~g~-~~~A~~~y~~A  144 (145)
T PF09976_consen  102 DEALATLQQIP-----DEAFKALAAELLGDIYLAQGD-YDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHhcc-----CcchHHHHHHHHHHHHHHCCC-HHHHHHHHHHh
Confidence            66666654411     123334455556666666666 66666666555

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.95  E-value=2e-07  Score=99.08  Aligned_cols=203  Identities=10%  Similarity=0.054  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      .+|..+-..|.+.|++++|++.|++..+. .  ......+|+.+... +.+.|++++|+..|.+.....-.    +. ..
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~-g--i~p~~~tynsLI~a-y~k~G~~deAl~lf~eM~~~Gv~----PD-~~  650 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEY-N--IKGTPEVYTIAVNS-CSQKGDWDFALSIYDDMKKKGVK----PD-EV  650 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C--CCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCC----CC-HH
Confidence            35666667777777777777777776654 1  12223456667677 44448888888888877653211    11 45


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      +|..+...|.+.|++++|.+++++.......++ ..+|..+...|.+.|++++|++.|++..+...  .| ...+|..+.
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~--~P-dvvtyN~LI  726 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSIKL--RP-TVSTMNALI  726 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CC-CHHHHHHHH
Confidence            788899999999999999999998876543333 46799999999999999999999998765311  12 245689999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ..|.+.|+ +++|.+.|++....    +-.+ -..+|..+...+.+.|++++|.+++.++.+
T Consensus       727 ~gy~k~G~-~eeAlelf~eM~~~----Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        727 TALCEGNQ-LPKALEVLSEMKRL----GLCP-NTITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHHCCC-HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999 99999999986532    2222 234566677899999999999999998865

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.95  E-value=2.1e-08  Score=84.42  Aligned_cols=138  Identities=10%  Similarity=0.004  Sum_probs=102.7

Q ss_pred             ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875          131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV  210 (480)
Q Consensus       131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  210 (480)
                      .|..+...+.+.+........+.++..+|.++..+|++++|+.+|++++.+..+ +...+.++.++|.++...|+ +++|
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~-~~eA   91 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGE-HTKA   91 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCC-HHHH
Confidence            455666666555444444556788999999999999999999999999988443 34456789999999999999 9999


Q ss_pred             HHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCCCC
Q psy875          211 VSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSS  270 (480)
Q Consensus       211 ~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~  270 (480)
                      +.++++++.+...... ......++..++..+..+|++++|..+++++...-......+|.
T Consensus        92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033         92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999987322211 12233445555555559999999999999998876665554443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.2e-09  Score=61.59  Aligned_cols=29  Identities=45%  Similarity=0.700  Sum_probs=20.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          452 AGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|+||||+|+..|+.+++++|+++|+|||
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36777777777777777777777777765

>KOG1174|consensus

Probab=98.94  E-value=9.1e-08  Score=86.67  Aligned_cols=172  Identities=14%  Similarity=0.060  Sum_probs=144.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      .+..+.-..++...|......++.++|+-.|+.|..+    .|....+|..+-.+|... |.+.+|....+.++......
T Consensus       327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----ap~rL~~Y~GL~hsYLA~-~~~kEA~~~An~~~~~~~~s  401 (564)
T KOG1174|consen  327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML----APYRLEIYRGLFHSYLAQ-KRFKEANALANWTIRLFQNS  401 (564)
T ss_pred             hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHhhcc
Confidence            3445556778999999999999999999999999999    778889999999997777 99999999999999876644


Q ss_pred             CCchHHHHHHHHHH-HHHH-hcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875          110 KDDKLIRTVMRSIK-KLYK-KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP  187 (480)
Q Consensus       110 ~~~~~~~~~~~~l~-~~y~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~  187 (480)
                            +.++..+| .++. .----++|.+++++++.+.  |....+-..+|.++...|.++.++..+++.+..+.+   
T Consensus       402 ------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D---  470 (564)
T KOG1174|consen  402 ------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD---  470 (564)
T ss_pred             ------hhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc---
Confidence                  44555565 3333 3345789999999999776  556677788999999999999999999999988554   


Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                        ...+..||+++...+. +++|+++|..|+.+
T Consensus       471 --~~LH~~Lgd~~~A~Ne-~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  471 --VNLHNHLGDIMRAQNE-PQKAMEYYYKALRQ  500 (564)
T ss_pred             --cHHHHHHHHHHHHhhh-HHHHHHHHHHHHhc
Confidence              3457789999999999 99999999999987

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.94  E-value=4.4e-07  Score=78.66  Aligned_cols=170  Identities=11%  Similarity=0.087  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHH
Q psy875           74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLA  152 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~  152 (480)
                      ....++..|..++.. |+|.+|+..|++.....+.   .+....+...+|.+|...|+|++|+..+++.+...|. +...
T Consensus         4 ~~~~lY~~a~~~~~~-g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen    4 TAEALYQKALEALQQ-GDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             -HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            345667888884444 9999999999999887654   4555678889999999999999999999999988776 4456


Q ss_pred             HHHHHHHHHHHhh-----------ccHHHHHHHHHHHHhhhhcCc-------------HHHHHHHHHHHHHHHHhCCchH
Q psy875          153 SCYISLAQTYKDN-----------KQYNLAVDYFNKELRLHARNF-------------PEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       153 ~~~~~la~~y~~~-----------~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      .+++.+|.++..+           +...+|+..|++.++..++..             ...+.--..+|..|++.|. |.
T Consensus        80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~-y~  158 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK-YK  158 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--HH
T ss_pred             hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence            7888888886654           344589999999888766521             2234556778999999999 99


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875          209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE  251 (480)
Q Consensus       209 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  251 (480)
                      -|+..++.+++   ..++.+....++..++..|.++|..+.|.
T Consensus       159 aA~~r~~~v~~---~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  159 AAIIRFQYVIE---NYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHH---HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999988754   46777888899999999999999998554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.93  E-value=4.7e-08  Score=79.05  Aligned_cols=113  Identities=9%  Similarity=0.011  Sum_probs=87.0

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHH
Q psy875           59 YFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSE  138 (480)
Q Consensus        59 ~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~  138 (480)
                      .+++++..    .+........+|..|... |++++|+..+++++...+.      ...++.++|.+|..+|++++|+.+
T Consensus         5 ~~~~~l~~----~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~   73 (135)
T TIGR02552         5 TLKDLLGL----DSEQLEQIYALAYNLYQQ-GRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDA   73 (135)
T ss_pred             hHHHHHcC----ChhhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666    555566677888885444 8899999998888876432      246677889999999999999999


Q ss_pred             HHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          139 LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       139 ~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      +++++...+  .....++.+|.+|...|++++|+.+++++++..+.
T Consensus        74 ~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        74 YALAAALDP--DDPRPYFHAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             HHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            998876654  34577888999999999999999999998888544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1127|consensus

Probab=98.93  E-value=9.8e-08  Score=95.34  Aligned_cols=222  Identities=15%  Similarity=0.080  Sum_probs=162.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           29 SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        29 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      .......++.++..||.+|..-.+...|.++|++|.++    .+..+.+.-.++.. +....+++.|......+-+..+ 
T Consensus       484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adt-yae~~~we~a~~I~l~~~qka~-  557 (1238)
T KOG1127|consen  484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADT-YAEESTWEEAFEICLRAAQKAP-  557 (1238)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHH-hhccccHHHHHHHHHHHhhhch-
Confidence            33444556777777777777777777777788877777    55555556666777 4444777777655222222111 


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH
Q psy875          109 NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE  188 (480)
Q Consensus       109 ~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~  188 (480)
                         ...-...+..+|..|...+++.+|+..|+.++...|+  -..++..+|.+|...|+|..|++.|.++..+    .|.
T Consensus       558 ---a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L----rP~  628 (1238)
T KOG1127|consen  558 ---AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLL----RPL  628 (1238)
T ss_pred             ---HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhc----CcH
Confidence               1111223335899999999999999999999977654  4478999999999999999999999999988    566


Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ-NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      .....+-.+.+....|+ |.+|+..+.+.+..... ..-......++..++..+...|=+.+|..++++.++..--+-.
T Consensus       629 s~y~~fk~A~~ecd~Gk-Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGK-YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             hHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            66777788999999999 99999999988865432 2233456777888888888889899999999888776544333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.93  E-value=5e-07  Score=80.22  Aligned_cols=175  Identities=12%  Similarity=0.081  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLAS  153 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~  153 (480)
                      ...++..|..+... |+|++|+..|++.+...+   ..+....+...+|.+|.+.++|++|+.++++.+...|. +....
T Consensus        32 ~~~~Y~~A~~~~~~-g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         32 PSEIYATAQQKLQD-GNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            33455677774444 999999999999998765   34566667889999999999999999999999988876 56678


Q ss_pred             HHHHHHHHHHhhc------------------cHHHHHHHHHHHHhhhhcC-------------cHHHHHHHHHHHHHHHH
Q psy875          154 CYISLAQTYKDNK------------------QYNLAVDYFNKELRLHARN-------------FPEAVKTLGEIGDLYEL  202 (480)
Q Consensus       154 ~~~~la~~y~~~~------------------~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~l~~~~~~  202 (480)
                      +++.+|.++...+                  ...+|+..|++.++..++.             ....+.--..+|..|++
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~  187 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK  187 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999998764443                  2357788888888776652             12234455678999999


Q ss_pred             hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          203 QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      .|. |.-|+.-++..++   ..++.+...+++..+...|..+|..++|..+....
T Consensus       188 ~~~-y~AA~~r~~~v~~---~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        188 RGA-YVAVVNRVEQMLR---DYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             cCc-hHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            999 9998888877754   56677788899999999999999999999877654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.92  E-value=1.4e-07  Score=77.06  Aligned_cols=121  Identities=11%  Similarity=0.084  Sum_probs=100.2

Q ss_pred             hcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875          128 KHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP  206 (480)
Q Consensus       128 ~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (480)
                      ..++..++...+++.....+.. ....+...+|.++...|++++|...|++++... .++.....+...+|.++..+|+ 
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~-  100 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQ-  100 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCC-
Confidence            5778888888888877766654 336778889999999999999999999999865 3455667788999999999999 


Q ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          207 FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       207 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      |++|+..++.       .........+...+|++|..+|++++|...|+++
T Consensus       101 ~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  101 YDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            9999988855       2334456667889999999999999999999876

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.91  E-value=1.1e-08  Score=74.91  Aligned_cols=83  Identities=23%  Similarity=0.264  Sum_probs=49.5

Q ss_pred             cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875          129 HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      +|+|++|+.++++.+...+.......+..+|.+|+..|+|++|+.++++ .+.    .+........+|.+++.+|+ |+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~----~~~~~~~~~l~a~~~~~l~~-y~   75 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL----DPSNPDIHYLLARCLLKLGK-YE   75 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----HHCHHHHHHHHHHHHHHTT--HH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----CCCCHHHHHHHHHHHHHhCC-HH
Confidence            4667777777777666555321334455567777777777777777766 333    22234445555777777777 77


Q ss_pred             HHHHHHHHH
Q psy875          209 LVVSTHEKA  217 (480)
Q Consensus       209 ~A~~~~~~a  217 (480)
                      +|+..++++
T Consensus        76 eAi~~l~~~   84 (84)
T PF12895_consen   76 EAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            777766654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.91  E-value=3.2e-08  Score=79.07  Aligned_cols=103  Identities=7%  Similarity=0.074  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                      .......+.+|..+...|++++|...|+-.....  +.....+++||.++..+|+|++|+..|.+++.+.    +..+..
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----~ddp~~  105 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----IDAPQA  105 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchH
Confidence            3445567789999999999999999999887665  5566889999999999999999999999999994    445678


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      +.++|.+++..|+ .+.|.+.|+.|+....
T Consensus       106 ~~~ag~c~L~lG~-~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        106 PWAAAECYLACDN-VCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHHHhc
Confidence            9999999999999 9999999999998863

>KOG1127|consensus

Probab=98.90  E-value=1.5e-07  Score=94.04  Aligned_cols=191  Identities=15%  Similarity=0.128  Sum_probs=156.9

Q ss_pred             cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q psy875           50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH  129 (480)
Q Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~  129 (480)
                      +.+...|+..|-+++++    .+..+.++..+|.+|... .+...|.++|+||.++..      ..+.+...++..|...
T Consensus       471 rK~~~~al~ali~alrl----d~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~  539 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRL----DVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEE  539 (1238)
T ss_pred             hhhHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhcc
Confidence            45588899999999998    788899999999996555 689999999999998833      3355566788999999


Q ss_pred             CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHH
Q psy875          130 DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL  209 (480)
Q Consensus       130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (480)
                      .+++.|......+-+..+.......+...|-.|.+.+++..|+..|+-++++    .|.-..+|..+|.+|...|+ |.-
T Consensus       540 ~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----dPkD~n~W~gLGeAY~~sGr-y~~  614 (1238)
T KOG1127|consen  540 STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----DPKDYNLWLGLGEAYPESGR-YSH  614 (1238)
T ss_pred             ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----CchhHHHHHHHHHHHHhcCc-eeh
Confidence            9999999986655554444333344556999999999999999999999998    67778899999999999999 999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       210 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      |++.|.+|..+      +|.-.-+.+..+-+....|+|.+|...+.+......
T Consensus       615 AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  615 ALKVFTKASLL------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             HHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            99999999877      555555666778888999999999999888766443

>KOG3060|consensus

Probab=98.90  E-value=1.5e-06  Score=74.04  Aligned_cols=173  Identities=16%  Similarity=0.119  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ..++....|-....+....|+.+.|..++++....+    |........-|.. +...|+|++|+++|..-++-.     
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~-lEa~~~~~~A~e~y~~lL~dd-----  116 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAML-LEATGNYKEAIEYYESLLEDD-----  116 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHH-HHHhhchhhHHHHHHHHhccC-----
Confidence            445667777778888888999999999999877762    3333333344666 444499999999998877532     


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                       +.-..++...-.+...+|+.-+|++-+.+.+......  ..++..++.+|...|+|++|.-++++.+-+    .|..+.
T Consensus       117 -pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--~EAW~eLaeiY~~~~~f~kA~fClEE~ll~----~P~n~l  189 (289)
T KOG3060|consen  117 -PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--QEAWHELAEIYLSEGDFEKAAFCLEELLLI----QPFNPL  189 (289)
T ss_pred             -cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc----CCCcHH
Confidence             2223445555566778899899999998888766544  478899999999999999999999999887    566677


Q ss_pred             HHHHHHHHHHHhC---CchHHHHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQE---KPFELVVSTHEKALDLAR  222 (480)
Q Consensus       192 ~~~~l~~~~~~~~---~~~~~A~~~~~~al~~~~  222 (480)
                      .+..+|++++.+|   + +.-|.++|.+++++..
T Consensus       190 ~f~rlae~~Yt~gg~eN-~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  190 YFQRLAEVLYTQGGAEN-LELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHhCh
Confidence            7888898888877   4 6789999999998843

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.90  E-value=6e-08  Score=81.86  Aligned_cols=101  Identities=15%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      ....+.+++.+|..+...|++++|+.+|+++++. ..+.+.....+..+|.+| ...|++++|+.++++++...+.    
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~----  104 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIY-ASNGEHDKALEYYHQALELNPK----  104 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcc----
Confidence            3345566777777777777777777777777766 333333455666777773 3347777777777777765322    


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHT  141 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~  141 (480)
                        ....+..+|.+|...|+...|...+.+
T Consensus       105 --~~~~~~~lg~~~~~~g~~~~a~~~~~~  131 (172)
T PRK02603        105 --QPSALNNIAVIYHKRGEKAEEAGDQDE  131 (172)
T ss_pred             --cHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence              134455666666666665555544443

>KOG1586|consensus

Probab=98.90  E-value=5.7e-07  Score=75.44  Aligned_cols=169  Identities=14%  Similarity=0.116  Sum_probs=101.5

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhh
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD----LASCYISLAQTYKDN  165 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~~la~~y~~~  165 (480)
                      ++|..|-..|.+|-++..+.++....+..|...+.+|.+- +.++|+.++++++++.....    -+.-+..+|.+|...
T Consensus        48 K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd  126 (288)
T KOG1586|consen   48 KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD  126 (288)
T ss_pred             HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh
Confidence            4555555555555555444444444555555555555444 66666666666665554421    134466778777654


Q ss_pred             -ccHHHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHH
Q psy875          166 -KQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLY  241 (480)
Q Consensus       166 -~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~  241 (480)
                       .++++|+.+|+++-+.++++  ......++.-.+..--..++ |.+|+..|++...-.-..+- ......-+..-+.++
T Consensus       127 l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh  205 (288)
T KOG1586|consen  127 LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH  205 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh
Confidence             88888888888888876662  33344566667777777788 88888888876543221111 112233444556667


Q ss_pred             HHcCChHHHHHHHHHHHHH
Q psy875          242 KKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       242 ~~~g~~~~A~~~~~~~~~l  260 (480)
                      ....+.-.+...++++.++
T Consensus       206 l~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  206 LCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HhcccHHHHHHHHHHHHhc
Confidence            7777777777777776553

>KOG1586|consensus

Probab=98.90  E-value=1.2e-06  Score=73.58  Aligned_cols=187  Identities=19%  Similarity=0.157  Sum_probs=142.1

Q ss_pred             hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      +-+++.+..+..-|+.|....+++.|=..|.++-++.  .++..+.+.+|...+.+ +.. .+..+|..++++|++++..
T Consensus        28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk-~~~~eAv~cL~~aieIyt~  105 (288)
T KOG1586|consen   28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKK-VDPEEAVNCLEKAIEIYTD  105 (288)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhc-cChHHHHHHHHHHHHHHHh
Confidence            3567788899999999999999999999999999887  55666788899999999 677 7999999999999999998


Q ss_pred             CCCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          109 NKDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       109 ~~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      .+.-..-+.-+..+|.+|..- .++++|+.+|+++-.-...    .....++...|..-..+++|.+|+..|++.....-
T Consensus       106 ~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  106 MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            887777788888999999866 8999999999977644332    12245677778888899999999999999766544


Q ss_pred             cCcHH--HH-HHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          184 RNFPE--AV-KTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       184 ~~~~~--~~-~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +++..  .+ ..++.-|.+++-..+ .--+...+++..++
T Consensus       186 ~n~LLKys~KdyflkAgLChl~~~D-~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  186 DNNLLKYSAKDYFLKAGLCHLCKAD-EVNAQRALEKYQEL  224 (288)
T ss_pred             cchHHHhHHHHHHHHHHHHhHhccc-HHHHHHHHHHHHhc
Confidence            43221  12 233445556655555 44444444444443

>KOG0818|consensus

Probab=98.87  E-value=1.2e-08  Score=93.56  Aligned_cols=85  Identities=35%  Similarity=0.502  Sum_probs=79.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875          388 ALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT  466 (480)
Q Consensus       388 ~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~  466 (480)
                      .||.+++.|+.++.--|+..|+++|..+. .|.||||.|+..|...-+++|+-+|+|++  .+|.+|.||+.+|-..||-
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~--a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG--AQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC--CCCCCCCcHHHHHHhcCch
Confidence            48999999999998889999999999874 69999999999999999999999999999  6799999999999999999


Q ss_pred             HHHHHHHH
Q psy875          467 DIVQALVS  474 (480)
Q Consensus       467 ~~~~~Ll~  474 (480)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            98887775

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.87  E-value=1.9e-07  Score=78.80  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=80.9

Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                      .....+.++.++|..+...|++++|+.+|++++...+.+ ....++.++|.+|...|++++|+.++++++++.    +..
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~  105 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN----PKQ  105 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc
Confidence            345567788999999999999999999999998766543 346789999999999999999999999999983    344


Q ss_pred             HHHHHHHHHHHHHhCC------chHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEK------PFELVVSTHEKALDL  220 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~------~~~~A~~~~~~al~~  220 (480)
                      ...+..+|.++...|+      ++++|+..+++|++.
T Consensus       106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~  142 (172)
T PRK02603        106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY  142 (172)
T ss_pred             HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence            5666777777777665      044455555555443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.86  E-value=1.2e-07  Score=75.88  Aligned_cols=99  Identities=13%  Similarity=0.045  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      .....+.+|..++..|++++|.+.|+-...+    .+....-|+++|.+ +..+|+|.+|+..|.+|+.+.+..      
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~-~Q~~g~~~~AI~aY~~A~~L~~dd------  102 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----DAWSFDYWFRLGEC-CQAQKHWGEAIYAYGRAAQIKIDA------  102 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCCC------
Confidence            3444555555555666666666666655555    45555555566666 333366666666666665554321      


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSS  145 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~  145 (480)
                      ...+.++|.+|+..|+.+.|.+.|+.++..
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            234455555555555555555555555533

>KOG1128|consensus

Probab=98.86  E-value=4.8e-08  Score=94.63  Aligned_cols=189  Identities=17%  Similarity=0.122  Sum_probs=144.0

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875           44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK  123 (480)
Q Consensus        44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~  123 (480)
                      ..+|...|+..+|-.+..+-++     .+.....|..+|.+ ..+       -.+|++|.++.+..     .+.+...+|
T Consensus       431 i~CY~~lg~~~kaeei~~q~le-----k~~d~~lyc~LGDv-~~d-------~s~yEkawElsn~~-----sarA~r~~~  492 (777)
T KOG1128|consen  431 ILCYLLLGQHGKAEEINRQELE-----KDPDPRLYCLLGDV-LHD-------PSLYEKAWELSNYI-----SARAQRSLA  492 (777)
T ss_pred             HHHHHHhcccchHHHHHHHHhc-----CCCcchhHHHhhhh-ccC-------hHHHHHHHHHhhhh-----hHHHHHhhc
Confidence            3444555566666666655443     24445566667776 333       35677777765432     234566677


Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ  203 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~  203 (480)
                      ......++|+++.+.++.++.+.+  -...+|+.+|.+..+.++++.|.++|..++.+    .|....+|+|++.+|...
T Consensus       493 ~~~~~~~~fs~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  493 LLILSNKDFSEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRL  566 (777)
T ss_pred             cccccchhHHHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHH
Confidence            777889999999999999997764  44578999999999999999999999999998    677789999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          204 EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       204 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      ++ -.+|...+++|++.-      ..-..+..+-..+..+.|.+++|.+.+.+...+.+.
T Consensus       567 ~~-k~ra~~~l~EAlKcn------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  567 KK-KKRAFRKLKEALKCN------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             hh-hHHHHHHHHHHhhcC------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            99 999999999999873      222344556667788999999999999988876654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.85  E-value=1.3e-06  Score=85.53  Aligned_cols=92  Identities=18%  Similarity=0.226  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT  232 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  232 (480)
                      ++++.+|..|...|++++|++++++|++.    .|..+..|...|.++...|+ +.+|.+.++.|-.+      +..-..
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~-~~~Aa~~~~~Ar~L------D~~DRy  263 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGD-LKEAAEAMDEAREL------DLADRY  263 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhC------ChhhHH
Confidence            45555566666666666666666666655    44555556666666666666 66666665555444      222222


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHH
Q psy875          233 VMRSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       233 ~~~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      +-...+....+.|+.++|.....
T Consensus       264 iNsK~aKy~LRa~~~e~A~~~~~  286 (517)
T PF12569_consen  264 INSKCAKYLLRAGRIEEAEKTAS  286 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH
Confidence            33344555556666666555543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=2.4e-07  Score=79.44  Aligned_cols=158  Identities=13%  Similarity=0.071  Sum_probs=127.1

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      ..++..+...|+-+.+..+..++...    .+.........|.. ....|+|..|+..+++|..+.+..      ..+++
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~d~~ll~~~gk~-~~~~g~~~~A~~~~rkA~~l~p~d------~~~~~  138 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA----YPKDRELLAAQGKN-QIRNGNFGEAVSVLRKAARLAPTD------WEAWN  138 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc----CcccHHHHHHHHHH-HHHhcchHHHHHHHHHHhccCCCC------hhhhh
Confidence            77888888888888888888876555    33333334447777 555599999999999999885533      56889


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                      .+|.+|.+.|+++.|..-|.++++..+...  .+..|+|..|.-.|+++.|..++.++...    ++.-..+..+++.+.
T Consensus       139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~~v~~NLAl~~  212 (257)
T COG5010         139 LLGAALDQLGRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLS----PAADSRVRQNLALVV  212 (257)
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCchHHHHHHHHHH
Confidence            999999999999999999999998776544  77899999999999999999999998776    333456778999999


Q ss_pred             HHhCCchHHHHHHHHH
Q psy875          201 ELQEKPFELVVSTHEK  216 (480)
Q Consensus       201 ~~~~~~~~~A~~~~~~  216 (480)
                      -.+|+ +++|.....+
T Consensus       213 ~~~g~-~~~A~~i~~~  227 (257)
T COG5010         213 GLQGD-FREAEDIAVQ  227 (257)
T ss_pred             hhcCC-hHHHHhhccc
Confidence            99999 8888765543

>KOG1585|consensus

Probab=98.82  E-value=1.4e-06  Score=73.70  Aligned_cols=202  Identities=13%  Similarity=0.039  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChH
Q psy875           54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLD  133 (480)
Q Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~  133 (480)
                      .+|.+...+.......+....+..|..-+.. +...++|++|...+.||.+..+.......-+.+|-..+.+...+..+.
T Consensus        10 ~ea~e~~a~t~~~wkad~dgaas~yekAAva-fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls   88 (308)
T KOG1585|consen   10 SEADEMTALTLTRWKADWDGAASLYEKAAVA-FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS   88 (308)
T ss_pred             HHHHHHHHHHhhccCCCchhhHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence            3344443333332234444556666666777 444488888888888888877776666666778888888888888888


Q ss_pred             HHHHHHHHHhccccc---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHHHhCCchH
Q psy875          134 SACSELHTVLSSDLC---KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       134 ~A~~~~~~~l~~~~~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      ++..+|+++......   ++.+..-...|-=..+..++++|+..|++++.+...+  .......+...+.++.+..+ |.
T Consensus        89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~  167 (308)
T KOG1585|consen   89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FT  167 (308)
T ss_pred             HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hh
Confidence            888888887754432   4443333333444456678999999999999887663  23345566778889999999 99


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       209 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      +|-..+.+-.....+..........+.....+|.-..+|..|...++..
T Consensus       168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~  216 (308)
T KOG1585|consen  168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC  216 (308)
T ss_pred             HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence            9998888887777777777777777777777788888998888888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.81  E-value=7e-09  Score=58.41  Aligned_cols=29  Identities=48%  Similarity=0.697  Sum_probs=22.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          417 AGWLPLHEAANHGHTDIVQALVSAGADPN  445 (480)
Q Consensus       417 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  445 (480)
                      .|+||||+||..|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36777777777777777777777777776

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.80  E-value=9.2e-08  Score=99.63  Aligned_cols=201  Identities=12%  Similarity=0.137  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      .+|..+...+...|++++|.+.+...++. .  .+....+++.+...| .+.|++++|.+.|++..+     ++    ..
T Consensus       326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g--~~~d~~~~~~Li~~y-~k~G~~~~A~~vf~~m~~-----~d----~~  392 (697)
T PLN03081        326 FTFSIMIRIFSRLALLEHAKQAHAGLIRT-G--FPLDIVANTALVDLY-SKWGRMEDARNVFDRMPR-----KN----LI  392 (697)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHh-C--CCCCeeehHHHHHHH-HHCCCHHHHHHHHHhCCC-----CC----ee
Confidence            35666666677777777777777666654 1  111122344445552 223666666555554321     01    23


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH----------
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP----------  187 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~----------  187 (480)
                      +|+.+...|.+.|+.++|++.|++.......|+ ..+|..+...+...|+.++|.++|++..+...-.+.          
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            455555555555666666665555443322222 233444555555555555555555544332110000          


Q ss_pred             --------------------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875          188 --------------------EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       188 --------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  247 (480)
                                          ....+|..+...+...|+ ++.|...+++.+.+      .+.....|..|+.+|.+.|++
T Consensus       472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~-~~~a~~~~~~l~~~------~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN-LELGRLAAEKLYGM------GPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHhCC------CCCCCcchHHHHHHHHhCCCH
Confidence                                012234444444444444 45444444443322      122234567788888888888


Q ss_pred             HHHHHHHHHHHH
Q psy875          248 TELEQIKTELKS  259 (480)
Q Consensus       248 ~~A~~~~~~~~~  259 (480)
                      ++|.+.+++..+
T Consensus       545 ~~A~~v~~~m~~  556 (697)
T PLN03081        545 AEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877654

>KOG3060|consensus

Probab=98.78  E-value=3.2e-06  Score=72.04  Aligned_cols=194  Identities=12%  Similarity=0.055  Sum_probs=146.3

Q ss_pred             ccccHHHHHHHHHHHHHHh-hc-cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy875           49 DNKQYNLAVDYFNKELRLH-AR-NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLY  126 (480)
Q Consensus        49 ~~~~~~~A~~~~~~al~~~-~~-~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y  126 (480)
                      ...+.++-++++...+... .+ ..++....|-....+ ....+..+-|..++++....++..      ..+...-|..+
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IA-Ald~~~~~lAq~C~~~L~~~fp~S------~RV~~lkam~l   96 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIA-ALDTGRDDLAQKCINQLRDRFPGS------KRVGKLKAMLL   96 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhCCCC------hhHHHHHHHHH
Confidence            3567788888888887775 23 344555555555555 455588999999998876665332      23445667889


Q ss_pred             HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875          127 KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP  206 (480)
Q Consensus       127 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (480)
                      ...|++++|+++|...++.+|...  .++...-.+...+|+.-+|++.+.+-++.+..+    ..+|..++.+|+..|+ 
T Consensus        97 Ea~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D----~EAW~eLaeiY~~~~~-  169 (289)
T KOG3060|consen   97 EATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQGKNLEAIKELNEYLDKFMND----QEAWHELAEIYLSEGD-  169 (289)
T ss_pred             HHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhHhH-
Confidence            999999999999999997775443  556666667778888889999999988885444    6789999999999999 


Q ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHH
Q psy875          207 FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD---KFTELEQIKTELKSLEE  262 (480)
Q Consensus       207 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~l~~  262 (480)
                      |++|.-++++.+-+      .|........+++++.-+|   |++-|.+||.++.++..
T Consensus       170 f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  170 FEKAAFCLEELLLI------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            99999999998866      4445556667788777776   56678899988887654

>KOG0818|consensus

Probab=98.78  E-value=2.2e-08  Score=91.91  Aligned_cols=91  Identities=30%  Similarity=0.341  Sum_probs=80.7

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      ....-||..++.|+.++---|+..|+++|....               ..|.||||.|+..|+..-+++|+-.|+|++..
T Consensus       132 ~LsrQLhasvRt~nlet~LRll~lGA~~N~~hp---------------ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~  196 (669)
T KOG0818|consen  132 DLSKQLHSSVRTGNLETCLRLLSLGAQANFFHP---------------EKGNTPLHVAAKAGQILQAELLAVYGADPGAQ  196 (669)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHcccccCCCCc---------------ccCCchhHHHHhccchhhhhHHhhccCCCCCC
Confidence            334567899999999999999999999998643               23999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHc
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSA  440 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~  440 (480)
                      |..|+||+.+|-..||-++.+.|++.
T Consensus       197 d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            99999999999999998887777654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.78  E-value=1.3e-07  Score=74.49  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      +++.+|..+...|++++|++.|.+++.. .++.+....+++.+|.+|+.. |++++|+.++++++...+..   +....+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~---~~~~~~   78 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKS---PKAPDA   78 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCC---CcccHH
Confidence            4455555555555555555555555554 222222234444555553222 55555555555555443211   112233


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDL  147 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~  147 (480)
                      +..+|.++..+|++++|+.++.+++...|
T Consensus        79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        79 LLKLGMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence            44555555555555555555555544433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.76  E-value=4.1e-07  Score=94.79  Aligned_cols=195  Identities=11%  Similarity=0.038  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      +|+.+...|...|++++|++.|.+..+.  +-.++ ..+|..+... +...|.+++|.+.+...++..-..     -..+
T Consensus       292 t~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd-~~t~~~ll~a-~~~~g~~~~a~~i~~~m~~~g~~~-----d~~~  362 (697)
T PLN03081        292 AWNSMLAGYALHGYSEEALCLYYEMRDS--GVSID-QFTFSIMIRI-FSRLALLEHAKQAHAGLIRTGFPL-----DIVA  362 (697)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC-HHHHHHHHHH-HHhccchHHHHHHHHHHHHhCCCC-----Ceee
Confidence            4555555555555555555555554332  11111 2234444444 333355666655555554432111     1234


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +..+...|.+.|++++|.+.|++...    ++ ..+|+.+...|.+.|+.++|++.|++..+.  +..|. ..++..+-.
T Consensus       363 ~~~Li~~y~k~G~~~~A~~vf~~m~~----~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd-~~T~~~ll~  434 (697)
T PLN03081        363 NTALVDLYSKWGRMEDARNVFDRMPR----KN-LISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPN-HVTFLAVLS  434 (697)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHhCCC----CC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCC-HHHHHHHHH
Confidence            55666666666777777766665432    11 245666777777777777777777665543  11111 334555666


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      .+...|. .++|..+|++..+.   .+..+ ....|..+...+.+.|++++|.+.++
T Consensus       435 a~~~~g~-~~~a~~~f~~m~~~---~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        435 ACRYSGL-SEQGWEIFQSMSEN---HRIKP-RAMHYACMIELLGREGLLDEAYAMIR  486 (697)
T ss_pred             HHhcCCc-HHHHHHHHHHHHHh---cCCCC-CccchHhHHHHHHhcCCHHHHHHHHH
Confidence            6666777 77777766665432   11111 22345566777777777777776654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.76  E-value=6e-08  Score=67.98  Aligned_cols=64  Identities=30%  Similarity=0.498  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE-KPFELVVSTHEKALDL  220 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~A~~~~~~al~~  220 (480)
                      +.++..+|.++...|+|++|+.+|.+++++    .+..+.++.++|.++..+| + +++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~-~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKD-YEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHc
Confidence            345666666666666666666666666666    4445566666666666666 5 66666666666654

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.75  E-value=1.7e-07  Score=73.82  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      .+++.+|..+...|++++|+..|.+++...+. +....+++.+|.++...|++++|+.+|++++...++. +....++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~   81 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-PKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-CcccHHHHH
Confidence            46788999999999999999999999876654 3336788999999999999999999999999875442 234567899


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      +|.++...|+ +++|..+++++++..
T Consensus        82 ~~~~~~~~~~-~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        82 LGMSLQELGD-KEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHHhCC-hHHHHHHHHHHHHHC
Confidence            9999999999 999999999998763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1156|consensus

Probab=98.75  E-value=1.4e-06  Score=83.50  Aligned_cols=205  Identities=11%  Similarity=0.046  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      .-....-..|......|+-++|..+...++..    ......+|..+|.+|... ++|++|+++|+.|+.+.+.+     
T Consensus        39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~~dN-----  108 (700)
T KOG1156|consen   39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSD-KKYDEAIKCYRNALKIEKDN-----  108 (700)
T ss_pred             ccchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCc-----
Confidence            44567788899999999999999999988876    555667889999995555 99999999999999885533     


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAV  190 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~  190 (480)
                       ..++..++.+..++++|+-....-.+.++..+.  .-..|...|..+.-.|+|..|.+..+...+....    ......
T Consensus       109 -~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~--~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s  185 (700)
T KOG1156|consen  109 -LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS--QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS  185 (700)
T ss_pred             -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence             567889999999999999888887777766644  3356778889999999999999888877665432    223445


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .+......+..+.|. +++|.+.+.+--.-      ...........+.++.+++++++|...+...+.
T Consensus       186 e~~Ly~n~i~~E~g~-~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  186 ELLLYQNQILIEAGS-LQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             HHHHHHHHHHHHccc-HHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            566666777788888 77777766553221      222334445678899999999999888776654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.75  E-value=2.4e-06  Score=88.49  Aligned_cols=206  Identities=8%  Similarity=-0.037  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ..+....-.+....+++.++++.|+..... ....|..  +....|..|... ++.++|+..|++++.-.......+.-.
T Consensus       292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y--~~~a~adayl~~-~~P~kA~~l~~~~~~~~~~~~~~~~~~  367 (822)
T PRK14574        292 QRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDY--ARRWAASAYIDR-RLPEKAAPILSSLYYSDGKTFRNSDDL  367 (822)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHH--HHHHHHHHHHhc-CCcHHHHHHHHHHhhccccccCCCcch
Confidence            445555556667789999999999876554 3233443  445678885555 999999999999976442111111112


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccc-------------cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDL-------------CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~-------------~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      .....|-..|...++|++|..++++.....|             +++.......++.++...|++.+|++.+++.+..  
T Consensus       368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--  445 (822)
T PRK14574        368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--  445 (822)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            2235677889999999999999997765333             3566788888999999999999999999999888  


Q ss_pred             cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          184 RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                        .|........+|.++..+|. +.+|+..++.++.+      .+....+...++.++..+|++.+|....+..
T Consensus       446 --aP~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~~l------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        446 --APANQNLRIALASIYLARDL-PRKAEQELKAVESL------APRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             --CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhh------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence              45556778899999999999 99999999887766      4555677789999999999999998777554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.74  E-value=9.4e-08  Score=66.98  Aligned_cols=65  Identities=29%  Similarity=0.462  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhh
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLA  106 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~  106 (480)
                      +.++..+|.++...|+|++|+.+|.+++++    .+....++.++|.+|... | ++++|+.++++|+++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999    777888999999995555 8 8999999999999874

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.74  E-value=1.4e-07  Score=89.11  Aligned_cols=95  Identities=21%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +...|...+..|+|++|+.+|.+++...+.  ...++.++|.+|..+|++++|+..+++++++    .+....+++.+|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----~P~~~~a~~~lg~   78 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIEL----DPSLAKAYLRKGT   78 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHH
Confidence            345678888999999999999999977654  4578999999999999999999999999998    4555778999999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +++.+|+ |++|+..|++++.+
T Consensus        79 ~~~~lg~-~~eA~~~~~~al~l   99 (356)
T PLN03088         79 ACMKLEE-YQTAKAALEKGASL   99 (356)
T ss_pred             HHHHhCC-HHHHHHHHHHHHHh
Confidence            9999999 99999999999987

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.73  E-value=9.5e-08  Score=69.87  Aligned_cols=84  Identities=24%  Similarity=0.288  Sum_probs=66.3

Q ss_pred             hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875          164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  243 (480)
                      ++|+|++|+.++++.++..+.++  ....++.+|.+++..|+ |++|+..+++ ...      .+........+|.++.+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGK-YEEAIELLQK-LKL------DPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTH------HHCHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCC------CCCCHHHHHHHHHHHHH
Confidence            36899999999999999855432  55677889999999999 9999999988 433      22234556677999999


Q ss_pred             cCChHHHHHHHHHH
Q psy875          244 HDKFTELEQIKTEL  257 (480)
Q Consensus       244 ~g~~~~A~~~~~~~  257 (480)
                      +|++++|+..++++
T Consensus        71 l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   71 LGKYEEAIKALEKA   84 (84)
T ss_dssp             TT-HHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhcC
Confidence            99999999999875

>KOG2376|consensus

Probab=98.73  E-value=2.8e-06  Score=80.74  Aligned_cols=197  Identities=17%  Similarity=0.143  Sum_probs=136.0

Q ss_pred             HHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q psy875           45 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKK  124 (480)
Q Consensus        45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~  124 (480)
                      ..+...++|++|.+...+.+.. .++......+   - .+...+.+.|++|+...++-...       .......+..+.
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~-~pdd~~a~~c---K-vValIq~~ky~~ALk~ikk~~~~-------~~~~~~~fEKAY   87 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSI-VPDDEDAIRC---K-VVALIQLDKYEDALKLIKKNGAL-------LVINSFFFEKAY   87 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhc-CCCcHhhHhh---h-HhhhhhhhHHHHHHHHHHhcchh-------hhcchhhHHHHH
Confidence            4566789999999999999888 4433333222   1 12245667888887433322111       111222268889


Q ss_pred             HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--------------------
Q psy875          125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--------------------  184 (480)
Q Consensus       125 ~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--------------------  184 (480)
                      +.+++++.++|+..++ .+..    ....+...-|++++++|+|++|+..|+..++...+                    
T Consensus        88 c~Yrlnk~Dealk~~~-~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   88 CEYRLNKLDEALKTLK-GLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             HHHHcccHHHHHHHHh-cccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            9999999999999998 2211    11245666799999999999999999876432111                    


Q ss_pred             -------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC---C------cHHHHHHHHHHHHHHHHcCChH
Q psy875          185 -------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK---D------DKLIRTVMRSMKKLYKKHDKFT  248 (480)
Q Consensus       185 -------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~~  248 (480)
                             .+......++|.|.++...|+ |.+|++.+++|+++.++.-   +      ...+..+...|+.++..+|+.+
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence                   122345678999999999999 9999999999977665421   1      1233455668999999999999


Q ss_pred             HHHHHHHHHHH
Q psy875          249 ELEQIKTELKS  259 (480)
Q Consensus       249 ~A~~~~~~~~~  259 (480)
                      +|...|...++
T Consensus       242 ea~~iy~~~i~  252 (652)
T KOG2376|consen  242 EASSIYVDIIK  252 (652)
T ss_pred             HHHHHHHHHHH
Confidence            99998877665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.72  E-value=4.6e-06  Score=81.69  Aligned_cols=207  Identities=14%  Similarity=0.190  Sum_probs=121.9

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc------
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD------  112 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~------  112 (480)
                      +......++...|++++|++++.+....    ..+....+-..|.+ +..+|++++|...|..-+...+....-      
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~l-l~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~   80 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAEL-LLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE   80 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            4444555555666666666666554443    44444444555666 444466666666666655554322110      


Q ss_pred             -------------hHHHHHHHHHHHHH-------------HhcCChHHHHHHHH-HHhcccccccHHHHHHHHHHHHHhh
Q psy875          113 -------------KLIRTVMRSIKKLY-------------KKHDNLDSACSELH-TVLSSDLCKDLASCYISLAQTYKDN  165 (480)
Q Consensus       113 -------------~~~~~~~~~l~~~y-------------~~~~~~~~A~~~~~-~~l~~~~~~~~~~~~~~la~~y~~~  165 (480)
                                   .....+|-.++.-|             ..-..|......|- ..+    ...+.....+|-.+|...
T Consensus        81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l----~KgvPslF~~lk~Ly~d~  156 (517)
T PF12569_consen   81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL----RKGVPSLFSNLKPLYKDP  156 (517)
T ss_pred             HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHH----hcCCchHHHHHHHHHcCh
Confidence                         11111111111111             11123333333322 222    123445666676677655


Q ss_pred             ccHHHHHHHHHHHHhh---------h----hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875          166 KQYNLAVDYFNKELRL---------H----ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT  232 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~---------~----~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  232 (480)
                      .+..-....+..-+..         .    ...+.....+++.+|..|...|+ +++|+++.++|++.      .|...+
T Consensus       157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~-~~~Al~~Id~aI~h------tPt~~e  229 (517)
T PF12569_consen  157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD-YEKALEYIDKAIEH------TPTLVE  229 (517)
T ss_pred             hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc------CCCcHH
Confidence            4444333333332211         1    12445557788999999999999 99999999999987      677789


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          233 VMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       233 ~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      .|...|+++...|++.+|..+.+.+..+.
T Consensus       230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD  258 (517)
T PF12569_consen  230 LYMTKARILKHAGDLKEAAEAMDEARELD  258 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            99999999999999999999999998764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.72  E-value=9e-06  Score=73.91  Aligned_cols=212  Identities=14%  Similarity=0.140  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ..+.-..+|..-+..-..+|+++.|-.+..++-+. .++.  ........+.+ ....|+++.|..-..++++..+..  
T Consensus       113 ~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~--~l~v~ltrarl-ll~~~d~~aA~~~v~~ll~~~pr~--  186 (400)
T COG3071         113 HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDD--TLAVELTRARL-LLNRRDYPAARENVDQLLEMTPRH--  186 (400)
T ss_pred             cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCc--hHHHHHHHHHH-HHhCCCchhHHHHHHHHHHhCcCC--
Confidence            33334445555666666677777777777776665 2221  22233445566 344477777777777766654432  


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc---cc-------------------------------------ccH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD---LC-------------------------------------KDL  151 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~---~~-------------------------------------~~~  151 (480)
                          ..++.....+|...|++.....+..+.-+..   +.                                     ..-
T Consensus       187 ----~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~  262 (400)
T COG3071         187 ----PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND  262 (400)
T ss_pred             ----hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence                3445566778888888888777665221100   00                                     111


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---------------------------CcHHHHHHHHHHHHHHHHhC
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---------------------------NFPEAVKTLGEIGDLYELQE  204 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---------------------------~~~~~~~~~~~l~~~~~~~~  204 (480)
                      ..+-..++.-+.+.|++++|.+..+.+++-..+                           .++..+..+..||..+++.+
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~  342 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK  342 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence            334455677788999999999999888764111                           13344578899999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          205 KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       205 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      . |.+|..+|+.|++..       .-...+..+|.++.++|+..+|.+.++++..+.
T Consensus       343 ~-w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         343 L-WGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             H-HHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            9 999999999988762       234456789999999999999999999988543

>KOG1156|consensus

Probab=98.69  E-value=2.5e-06  Score=81.98  Aligned_cols=202  Identities=12%  Similarity=0.060  Sum_probs=158.7

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      .++..+.-.+..+||.+.++..+..++-    .+....++...|.. ...+|+-++|..+-..++....      ....+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----~~eHgeslAmkGL~-L~~lg~~~ea~~~vr~glr~d~------~S~vC   77 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK----FPEHGESLAMKGLT-LNCLGKKEEAYELVRLGLRNDL------KSHVC   77 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh----CCccchhHHhccch-hhcccchHHHHHHHHHHhccCc------ccchh
Confidence            3455555667889999999999999886    55556666677888 6666999999999998887432      23568


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +..+|.+++..++|++|+++|+.|+.+.++.  ..++..++.+-.++++|+-..+.-.+-++.    .+..-..|...+.
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN--~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~~ra~w~~~Av  151 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDN--LQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPSQRASWIGFAV  151 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhHHHHHHHHH
Confidence            8899999999999999999999999887554  478999999999999999988887777777    5666778999999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDK--LIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      .+...|+ |..|....+..........+..  ...........+..+.|.+++|++.+....
T Consensus       152 s~~L~g~-y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e  212 (700)
T KOG1156|consen  152 AQHLLGE-YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE  212 (700)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence            9999999 9999998887766544223322  334455566777888888888887766554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=5.6e-07  Score=74.62  Aligned_cols=99  Identities=16%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             ChhhHHHhhccchhhhhhh-HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHH
Q psy875            1 MRFKIALSRGIGLSDSLDS-ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG   79 (480)
Q Consensus         1 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   79 (480)
                      .|+.+.|.+|.. ||+++- ......+.......+.++.+++.+|..+...|+|+.|.+.|...+++    .|..-.+..
T Consensus        63 eRA~l~fERGvl-YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----Dp~y~Ya~l  137 (297)
T COG4785          63 ERAQLLFERGVL-YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHL  137 (297)
T ss_pred             HHHHHHHHhcch-hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----CCcchHHHh
Confidence            378899999999 999998 55566666777788899999999999999999999999999999999    666667778


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875           80 EIGDLYELQEKSFEIVQSTHEKALDL  105 (480)
Q Consensus        80 ~lg~~y~~~~~~~~~A~~~~~kAl~~  105 (480)
                      +.|...|.- |+|.-|.+-+.+-..-
T Consensus       138 NRgi~~YY~-gR~~LAq~d~~~fYQ~  162 (297)
T COG4785         138 NRGIALYYG-GRYKLAQDDLLAFYQD  162 (297)
T ss_pred             ccceeeeec-CchHhhHHHHHHHHhc
Confidence            888884454 9999998777665443

>KOG0506|consensus

Probab=98.69  E-value=2.5e-08  Score=91.25  Aligned_cols=91  Identities=30%  Similarity=0.454  Sum_probs=83.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCCcHHHHHH
Q psy875          383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~tpl~~A~  461 (480)
                      .++..++++|+..|++..++-+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++. +.+++  ..|.-|+|||.-|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~--~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD--PKDRWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCC--hhhccCCCcchHhH
Confidence            3466789999999999999999999999999999999999999999999999999985 67777  56999999999999


Q ss_pred             HcCCHHHHHHHHHc
Q psy875          462 NHGHTDIVQALVSA  475 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~  475 (480)
                      ..+|.+++++|-+.
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            99999999999764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.68  E-value=2.1e-07  Score=69.59  Aligned_cols=96  Identities=29%  Similarity=0.390  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      ++.++|.++...|++++|+.++++++...+..  ..++..+|.++...+++++|+.++++++.....+    ..++..+|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~   75 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN----AKAYYNLG   75 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHH
Confidence            46789999999999999999999998776543  3678899999999999999999999999874332    36788999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .++...|+ +++|..++.+++..
T Consensus        76 ~~~~~~~~-~~~a~~~~~~~~~~   97 (100)
T cd00189          76 LAYYKLGK-YEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHh-HHHHHHHHHHHHcc
Confidence            99999999 99999999888754

>KOG0543|consensus

Probab=98.68  E-value=3.7e-07  Score=83.29  Aligned_cols=133  Identities=21%  Similarity=0.238  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      +.....-|..|++.|+|..|..-|++++..-..             .....++.||+.+|.++++|.+|+.+..++|++ 
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence            445567899999999999999999987743321             123568999999999999999999999999999 


Q ss_pred             hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q psy875          183 ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTEL-EQIKTELKS  259 (480)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  259 (480)
                         .+....+++.-|.++..+|+ |+.|+..|++++++      .|....+...|..+..+...+.+. .+.|..+..
T Consensus       287 ---~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  287 ---DPNNVKALYRRGQALLALGE-YDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             ---CCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               55567899999999999999 99999999999988      333345555666666665555443 444544443

>PLN03077 Protein ECB2; Provisional

Probab=98.68  E-value=2.7e-05  Score=83.41  Aligned_cols=127  Identities=15%  Similarity=0.158  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      .+|+.+...|.+.|++++|.+.|++...    ++ ..+|+.+...|.+.|++++|++.|++..+..-  .|. ..++..+
T Consensus       324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~--~Pd-~~t~~~l  395 (857)
T PLN03077        324 SVCNSLIQMYLSLGSWGEAEKVFSRMET----KD-AVSWTAMISGYEKNGLPDKALETYALMEQDNV--SPD-EITIASV  395 (857)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCC-ceeHHHH
Confidence            4566777777777777777777776432    11 24566777777777777777777776543311  111 1233444


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      -..+...|+ +++|.+.+..+.+.    +.. ....++..|...|.+.|++++|.+.+++.
T Consensus       396 l~a~~~~g~-~~~a~~l~~~~~~~----g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m  450 (857)
T PLN03077        396 LSACACLGD-LDVGVKLHELAERK----GLI-SYVVVANALIEMYSKCKCIDKALEVFHNI  450 (857)
T ss_pred             HHHHhccch-HHHHHHHHHHHHHh----CCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            446666777 77777776665432    111 22346667788888888888888877653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=3.4e-08  Score=57.47  Aligned_cols=29  Identities=48%  Similarity=0.785  Sum_probs=21.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          452 AGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|.||||+|+..|+.+++++|+++|++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            36777777777777777777777777764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705|consensus

Probab=98.67  E-value=8.3e-08  Score=89.96  Aligned_cols=97  Identities=25%  Similarity=0.274  Sum_probs=80.3

Q ss_pred             chHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy875          337 ESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS  416 (480)
Q Consensus       337 ~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~  416 (480)
                      ..-|+.|........+-+|+.+|........            ..+++|+|+||+||..|+..+.++|+.+|+|+-.+|.
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t------------~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda  692 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNET------------CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA  692 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhcc------------ccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc
Confidence            3456677777788888889999876654432            2355689999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          417 AGWLPLHEAANHGHTDIVQALVSAGADPN  445 (480)
Q Consensus       417 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  445 (480)
                      .|+|+|.+|-..|.-+|+.+|+.+|+...
T Consensus       693 ~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  693 HGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             CCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            99999999999999999999999987655

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.67  E-value=4.4e-07  Score=85.76  Aligned_cols=113  Identities=16%  Similarity=0.173  Sum_probs=81.7

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875           80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA  159 (480)
Q Consensus        80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la  159 (480)
                      ..|...+.. |+|++|+.+|.+|+.+.+..      ..++.++|.+|..+|++++|+..+++++...+  ....+++.+|
T Consensus         7 ~~a~~a~~~-~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg   77 (356)
T PLN03088          7 DKAKEAFVD-DDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKG   77 (356)
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHH
Confidence            345554555 88888888888888764432      45677888888888888888888888887664  4456788888


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC
Q psy875          160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK  205 (480)
Q Consensus       160 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (480)
                      .+|..+|+|++|+.+|++++++...+    ..+...++.+......
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P~~----~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAPGD----SRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHh
Confidence            88888888888888888888884433    3445556666555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.64  E-value=3.9e-07  Score=68.08  Aligned_cols=94  Identities=22%  Similarity=0.340  Sum_probs=49.1

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      ++.+|.++...|++++|+..+.++++.    .+....++..+|.+|... +++++|+.++++++...+...      .++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~------~~~   71 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNA------KAY   71 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcch------hHH
Confidence            455555666666666666666666555    222224445555553333 556666666665555433211      344


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhc
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLS  144 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~  144 (480)
                      ..+|.++...|++++|..++.+++.
T Consensus        72 ~~~~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          72 YNLGLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHc
Confidence            4555555555555555555555443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.62  E-value=6.5e-08  Score=56.27  Aligned_cols=28  Identities=57%  Similarity=0.807  Sum_probs=14.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          418 GWLPLHEAANHGHTDIVQALVSAGADPN  445 (480)
Q Consensus       418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  445 (480)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            4455555555555555555555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG1585|consensus

Probab=98.62  E-value=1.7e-05  Score=67.22  Aligned_cols=163  Identities=13%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      -+.+|-..|........+.++..+|++|..++  .+...-.+.++-.-|.+ ... .++++|++.|++++.+....+...
T Consensus        70 AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-len-v~Pd~AlqlYqralavve~~dr~~  147 (308)
T KOG1585|consen   70 AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA-LEN-VKPDDALQLYQRALAVVEEDDRDQ  147 (308)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhc-CCHHHHHHHHHHHHHHHhccchHH
Confidence            45555556666666666666666666666665  22233334444444555 333 566666666666666665554444


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                      .-...+...+.++.+..+|++|-..+.+.....    .-+.....+...-.+|....+|..|..+++..-++..-..+..
T Consensus       148 ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed  227 (308)
T KOG1585|consen  148 MAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSED  227 (308)
T ss_pred             HHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHH
Confidence            444555566666666666666666665433211    1133334444455555556666666666666555533344444


Q ss_pred             HHHHHHHHHHH
Q psy875          190 VKTLGEIGDLY  200 (480)
Q Consensus       190 ~~~~~~l~~~~  200 (480)
                      ..+..+|-..|
T Consensus       228 ~r~lenLL~ay  238 (308)
T KOG1585|consen  228 SRSLENLLTAY  238 (308)
T ss_pred             HHHHHHHHHHh
Confidence            55555555444

>KOG0783|consensus

Probab=98.62  E-value=1.9e-08  Score=98.07  Aligned_cols=79  Identities=33%  Similarity=0.497  Sum_probs=73.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                      |.-|+|+||.++..+...++++|+.+|++++..|. .|+||||-|...|+++|+-.|+.+|....  +.|+.|.+||..-
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~--i~Dkeglsplq~~  126 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR--IKDKEGLSPLQFL  126 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE--EecccCCCHHHHH
Confidence            33499999999999999999999999999999985 69999999999999999999999998888  6699999999987


Q ss_pred             HH
Q psy875          461 AN  462 (480)
Q Consensus       461 ~~  462 (480)
                      ++
T Consensus       127 ~r  128 (1267)
T KOG0783|consen  127 SR  128 (1267)
T ss_pred             hh
Confidence            76

>KOG0522|consensus

Probab=98.61  E-value=1.2e-07  Score=88.50  Aligned_cols=87  Identities=31%  Similarity=0.544  Sum_probs=73.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          387 TALHVAAARGNLTLVQSLLKQ--GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~--g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                      .|+|+++.....+-+...+..  +..++.+|..|.||||.|+..|+...++.|+..|+++.  ++|..||+|||-|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~--~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS--IKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc--ccccccccHHHHHHHcC
Confidence            458999998877655553332  45678889999999999999999999999999999999  66999999999999999


Q ss_pred             CHHHHHHHHHc
Q psy875          465 HTDIVQALVSA  475 (480)
Q Consensus       465 ~~~~~~~Ll~~  475 (480)
                      +.+++..++.+
T Consensus       100 ~~q~i~~vlr~  110 (560)
T KOG0522|consen  100 NEQIITEVLRH  110 (560)
T ss_pred             CHHHHHHHHHH
Confidence            99988776653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.60  E-value=1.9e-06  Score=88.45  Aligned_cols=154  Identities=14%  Similarity=0.135  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ..-.+++.+|.+|-.+|++++|...|++++++    .+..+.+++++|.. +... ++++|+.++.+|+..         
T Consensus       114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~n~~aLNn~AY~-~ae~-dL~KA~~m~~KAV~~---------  178 (906)
T PRK14720        114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKA----DRDNPEIVKKLATS-YEEE-DKEKAITYLKKAIYR---------  178 (906)
T ss_pred             hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CcccHHHHHHHHHH-HHHh-hHHHHHHHHHHHHHH---------
Confidence            33468899999999999999999999999999    67888899999999 4554 999999999999876         


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------------------ccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------------------KDLASCYISLAQTYKDNKQYNLAVDYFN  176 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------------------~~~~~~~~~la~~y~~~~~~~~A~~~~~  176 (480)
                                 |...++|.++.+++.+.+...+.                  ...+..+.-+=..|...++|++++++++
T Consensus       179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence                       33334555555555544433332                  2334455556689999999999999999


Q ss_pred             HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      .++++.+.    ...+...++.+|.  ++ |.. ...+++.+++..
T Consensus       248 ~iL~~~~~----n~~a~~~l~~~y~--~k-Y~~-~~~~ee~l~~s~  285 (906)
T PRK14720        248 KILEHDNK----NNKAREELIRFYK--EK-YKD-HSLLEDYLKMSD  285 (906)
T ss_pred             HHHhcCCc----chhhHHHHHHHHH--HH-ccC-cchHHHHHHHhc
Confidence            99999444    3455777888886  44 544 667777777644

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=4e-06  Score=78.22  Aligned_cols=147  Identities=11%  Similarity=0.034  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      .+.+..+..++.. |++++|+..++..+...+   +.   .+.....+.++...++.++|.+.+++++...|..  ....
T Consensus       307 aa~YG~A~~~~~~-~~~d~A~~~l~~L~~~~P---~N---~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~  377 (484)
T COG4783         307 AAQYGRALQTYLA-GQYDEALKLLQPLIAAQP---DN---PYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQ  377 (484)
T ss_pred             HHHHHHHHHHHHh-cccchHHHHHHHHHHhCC---CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHH
Confidence            3445556664443 677777766666443322   22   2333456777777777777777777777665543  3556


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR  235 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  235 (480)
                      .++|.+|.+.|++.+|+..++..+.-    .+..+..|..||.+|..+|+ -.+|...+                     
T Consensus       378 ~~~a~all~~g~~~eai~~L~~~~~~----~p~dp~~w~~LAqay~~~g~-~~~a~~A~---------------------  431 (484)
T COG4783         378 LNLAQALLKGGKPQEAIRILNRYLFN----DPEDPNGWDLLAQAYAELGN-RAEALLAR---------------------  431 (484)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhc----CCCCchHHHHHHHHHHHhCc-hHHHHHHH---------------------
Confidence            67777777777777777777766554    34445667777777777777 55444333                     


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH
Q psy875          236 SMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       236 ~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                        ++.|.-.|++++|...+..+.+
T Consensus       432 --AE~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         432 --AEGYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             --HHHHHhCCCHHHHHHHHHHHHH
Confidence              4445556666666666655544

>KOG0495|consensus

Probab=98.56  E-value=1e-05  Score=77.85  Aligned_cols=200  Identities=13%  Similarity=0.066  Sum_probs=152.6

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      .+...+..++..|+...|...+.+|.+. .+++.++   |..--.+ .....+++.|...+.+|.....       ...+
T Consensus       586 lwlM~ake~w~agdv~~ar~il~~af~~-~pnseei---wlaavKl-e~en~e~eraR~llakar~~sg-------TeRv  653 (913)
T KOG0495|consen  586 LWLMYAKEKWKAGDVPAARVILDQAFEA-NPNSEEI---WLAAVKL-EFENDELERARDLLAKARSISG-------TERV  653 (913)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCcHHH---HHHHHHH-hhccccHHHHHHHHHHHhccCC-------cchh
Confidence            4556677778889999999999999988 4443333   3333333 3444789999999999887433       1356


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      ++.-+.+...+++.++|+.+++++++..+  .....|..+|+++.++++.+.|.+.|...++.++    .....|..++.
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp--~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP----~~ipLWllLak  727 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFP--DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP----NSIPLWLLLAK  727 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCC--chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC----CCchHHHHHHH
Confidence            66777888889999999999999997774  5568899999999999999999999999988854    44557888999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      +-...|+ .-.|...++++.--      .|.....+....++-.+.|+.+.|.....++++-..+
T Consensus       728 leEk~~~-~~rAR~ildrarlk------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  728 LEEKDGQ-LVRARSILDRARLK------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHHHhcc-hhhHHHHHHHHHhc------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            9999998 99999999888533      2223344555666778899999999999888774433

>KOG0705|consensus

Probab=98.55  E-value=2.5e-07  Score=86.88  Aligned_cols=88  Identities=27%  Similarity=0.338  Sum_probs=77.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCC--CC--CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          389 LHVAAARGNLTLVQSLLKQGHPV--KV--QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~g~~~--~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                      |..|+...+...+-+|+.+|...  |.  -+..|+|+||+||+.|+..+.++|+=+|+|+-  .+|..|+|+|.+|.+.|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~--~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM--ARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce--ecccCCchhhhhHhhcc
Confidence            56677777888889999998653  32  24578999999999999999999999999999  67999999999999999


Q ss_pred             CHHHHHHHHHcCCC
Q psy875          465 HTDIVQALVSAGAE  478 (480)
Q Consensus       465 ~~~~~~~Ll~~ga~  478 (480)
                      .-+|+.+|+.+|+-
T Consensus       706 sqec~d~llq~gcp  719 (749)
T KOG0705|consen  706 SQECIDVLLQYGCP  719 (749)
T ss_pred             cHHHHHHHHHcCCC
Confidence            99999999999974

>KOG1128|consensus

Probab=98.55  E-value=1.5e-06  Score=84.50  Aligned_cols=167  Identities=16%  Similarity=0.152  Sum_probs=130.6

Q ss_pred             HHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q psy875           45 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKK  124 (480)
Q Consensus        45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~  124 (480)
                      ..|...|++-.=..+|++|.++ .++...  .+...+|...+.+ ++|.++.++++.++++..      ....+++.+|.
T Consensus       458 ~lyc~LGDv~~d~s~yEkawEl-sn~~sa--rA~r~~~~~~~~~-~~fs~~~~hle~sl~~np------lq~~~wf~~G~  527 (777)
T KOG1128|consen  458 RLYCLLGDVLHDPSLYEKAWEL-SNYISA--RAQRSLALLILSN-KDFSEADKHLERSLEINP------LQLGTWFGLGC  527 (777)
T ss_pred             hhHHHhhhhccChHHHHHHHHH-hhhhhH--HHHHhhccccccc-hhHHHHHHHHHHHhhcCc------cchhHHHhccH
Confidence            3444555655566677777777 322222  2344555553444 999999999999998843      34678999999


Q ss_pred             HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875          125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE  204 (480)
Q Consensus       125 ~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~  204 (480)
                      +..+.++++.|.++|...+...|  +.+.+++|++..|...++-.+|...+++|++-.    .....+|.|.-.+....|
T Consensus       528 ~ALqlek~q~av~aF~rcvtL~P--d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn----~~~w~iWENymlvsvdvg  601 (777)
T KOG1128|consen  528 AALQLEKEQAAVKAFHRCVTLEP--DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN----YQHWQIWENYMLVSVDVG  601 (777)
T ss_pred             HHHHHhhhHHHHHHHHHHhhcCC--CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC----CCCCeeeechhhhhhhcc
Confidence            99999999999999999997765  455889999999999999999999999999873    334567778888889999


Q ss_pred             CchHHHHHHHHHHHHHHHHcCCcH
Q psy875          205 KPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       205 ~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                      . +++|+..|.+-+.+.+...++.
T Consensus       602 e-~eda~~A~~rll~~~~~~~d~~  624 (777)
T KOG1128|consen  602 E-FEDAIKAYHRLLDLRKKYKDDE  624 (777)
T ss_pred             c-HHHHHHHHHHHHHhhhhcccch
Confidence            9 9999999999998877666544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=7.2e-06  Score=76.57  Aligned_cols=152  Identities=18%  Similarity=0.106  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ....+.|-.+..++..|++++|...++..+..    .|+..+.+...+.+ +...++.++|.+.+++++...+..     
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i-~~~~nk~~~A~e~~~kal~l~P~~-----  373 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA----QPDNPYYLELAGDI-LLEANKAKEAIERLKKALALDPNS-----  373 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCc-----
Confidence            45567888999999999999999999997666    55666666778999 555599999999999999885422     


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                       .....++|..|.+.|++.+|+..++..+...+  +....|..||..|..+|+-.+|...+                   
T Consensus       374 -~~l~~~~a~all~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~-------------------  431 (484)
T COG4783         374 -PLLQLNLAQALLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLAR-------------------  431 (484)
T ss_pred             -cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHH-------------------
Confidence             44567999999999999999999999886554  44477899999999999988876554                   


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                        +..|+..|+ +++|+..+..+.+..
T Consensus       432 --AE~~~~~G~-~~~A~~~l~~A~~~~  455 (484)
T COG4783         432 --AEGYALAGR-LEQAIIFLMRASQQV  455 (484)
T ss_pred             --HHHHHhCCC-HHHHHHHHHHHHHhc
Confidence              555667888 999999988887654

>KOG2300|consensus

Probab=98.54  E-value=3.9e-05  Score=71.46  Aligned_cols=224  Identities=12%  Similarity=0.055  Sum_probs=167.4

Q ss_pred             HHHHHHHHHHH--hccccHHHHHHHHHHHHHHh--hccCchHH--------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875           37 ASCYISLAQTY--KDNKQYNLAVDYFNKELRLH--ARNFPEAV--------KTLGEIGDLYELQEKSFEIVQSTHEKALD  104 (480)
Q Consensus        37 ~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~--~~~~~~~~--------~~~~~lg~~y~~~~~~~~~A~~~~~kAl~  104 (480)
                      ..++..+-.+-  ...|-|++|.++-.+++...  .+..+...        ..+-.+..+ ....|++.+|++-...+.+
T Consensus       273 icaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c-~lv~~~~~~al~~i~dm~~  351 (629)
T KOG2300|consen  273 ICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMC-RLVRGDYVEALEEIVDMKN  351 (629)
T ss_pred             hHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence            33444443333  34688999999999998875  11111111        122333555 5566999999999999998


Q ss_pred             hhhcCCCc----hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875          105 LARQNKDD----KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKEL  179 (480)
Q Consensus       105 ~~~~~~~~----~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al  179 (480)
                      .....+.+    ...+.+...+|......+.|+.|...|..+.......++ +.+-.++|.+|...++-+.   ++ +++
T Consensus       352 w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed---~y-~~l  427 (629)
T KOG2300|consen  352 WCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED---LY-KAL  427 (629)
T ss_pred             HHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH---HH-HHH
Confidence            88877654    334567888999999999999999999988876655444 7778889999999876443   32 333


Q ss_pred             hhhhc-------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875          180 RLHAR-------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ  252 (480)
Q Consensus       180 ~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  252 (480)
                      +....       .....+.+++..|...+.+++ +.||...+.+.++++...+........+..|+.+....||..++.+
T Consensus       428 d~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~-lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n  506 (629)
T KOG2300|consen  428 DLIGPLNTNSLSSQRLEASILYVYGLFAFKQND-LNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN  506 (629)
T ss_pred             HhcCCCCCCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence            33221       123456778888999999999 9999999999999997777778888889999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q psy875          253 IKTELKSLEEKLDL  266 (480)
Q Consensus       253 ~~~~~~~l~~~~~~  266 (480)
                      ..+-+..+..++..
T Consensus       507 mvrpamqlAkKi~D  520 (629)
T KOG2300|consen  507 MVRPAMQLAKKIPD  520 (629)
T ss_pred             ccchHHHHHhcCCC
Confidence            99999998887654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.53  E-value=2.6e-06  Score=65.92  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=28.5

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALD  104 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~  104 (480)
                      .+.+|.++-..|+.++|+.+|++++.. .-..+....++..+|.. +..+|++++|+..+++++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~last-lr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLAST-LRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence            444444444455555555555554443 22223333444444444 2333455555544444443

>KOG0495|consensus

Probab=98.52  E-value=2.4e-05  Score=75.48  Aligned_cols=200  Identities=16%  Similarity=0.099  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      ++|+.-+.+...+++.++|+++++++++.    .+.....|..+|++ +.+.++.+.|...|...++..+..      .-
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi-~e~~~~ie~aR~aY~~G~k~cP~~------ip  720 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKS----FPDFHKLWLMLGQI-EEQMENIEMAREAYLQGTKKCPNS------IP  720 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCchHHHHHHHhHH-HHHHHHHHHHHHHHHhccccCCCC------ch
Confidence            34555566666677777777777777776    55555666677777 444477777777776666554322      22


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc-----------
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF-----------  186 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~-----------  186 (480)
                      .+..++.+-...|+.-+|...+.++....|+.  ...|...-..-.+.|+.++|.....+|++-++++.           
T Consensus       721 LWllLakleEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~  798 (913)
T KOG0495|consen  721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP  798 (913)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence            34456666666777777777777766444432  24455555556667788888777777776543310           


Q ss_pred             ---------------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875          187 ---------------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE  251 (480)
Q Consensus       187 ---------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  251 (480)
                                     ...+..+..+|.+++...+ +++|.+.|.+|+++      .+...+++..+-.++...|.-+.-.
T Consensus       799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k-~~kar~Wf~Ravk~------d~d~GD~wa~fykfel~hG~eed~k  871 (913)
T KOG0495|consen  799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK-IEKAREWFERAVKK------DPDNGDAWAWFYKFELRHGTEEDQK  871 (913)
T ss_pred             CcccchHHHHHHHhccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHcc------CCccchHHHHHHHHHHHhCCHHHHH
Confidence                           0112456677888888888 88888888888776      4556666667777777777766666


Q ss_pred             HHHHHH
Q psy875          252 QIKTEL  257 (480)
Q Consensus       252 ~~~~~~  257 (480)
                      +.+.++
T Consensus       872 ev~~~c  877 (913)
T KOG0495|consen  872 EVLKKC  877 (913)
T ss_pred             HHHHHH
Confidence            655554

>KOG0543|consensus

Probab=98.51  E-value=4.1e-06  Score=76.64  Aligned_cols=131  Identities=19%  Similarity=0.193  Sum_probs=88.2

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhhhcCC--Cc-------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875           81 IGDLYELQEKSFEIVQSTHEKALDLARQNK--DD-------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL  151 (480)
Q Consensus        81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~--~~-------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~  151 (480)
                      -|..|+.. |+|..|...|++|+.......  +.       .....++.|++.+|.++++|.+|+....++|...+.  .
T Consensus       214 ~Gn~~fK~-gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--N  290 (397)
T KOG0543|consen  214 RGNVLFKE-GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--N  290 (397)
T ss_pred             hhhHHHhh-chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--c
Confidence            35553433 666666666666654433111  00       122457889999999999999999999999977754  4


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL  218 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al  218 (480)
                      ..+++.-|.++..+++|+.|+..|++++++.+.+    -.+...|..+..+.....+...+.|.+.+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N----ka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSN----KAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999999999995554    33444455554444441223344554444

>KOG2300|consensus

Probab=98.50  E-value=0.00018  Score=67.16  Aligned_cols=212  Identities=11%  Similarity=0.017  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCch-------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE-------AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .+-.+..+..-.|++.+|++-...+.+.. ...+.       .+.....+|.. ....+.|+.|...|..|.+....   
T Consensus       325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGly-s~sv~~~enAe~hf~~a~k~t~~---  399 (629)
T KOG2300|consen  325 LLEHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLY-SHSVNCYENAEFHFIEATKLTES---  399 (629)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhH-hhhcchHHHHHHHHHHHHHhhhH---
Confidence            34456667777999999999999998884 22222       23445556665 55558999999999999977543   


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--  184 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--  184 (480)
                      ....+.+-.|+|.+|...|+-+.-.+.++..-.....     ...+.+++--|...+.++++.||..++.+.+++...  
T Consensus       400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed  479 (629)
T KOG2300|consen  400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED  479 (629)
T ss_pred             HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence            3446777889999999988765544444432211111     122556777788889999999999999999998644  


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q psy875          185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK--FTELEQIKTE  256 (480)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~  256 (480)
                      .....+..+..+|.+....|+ -.++....+-++.++++..+.+.+......+-++|...|+  .+.+.+.++.
T Consensus       480 ~~rL~a~~LvLLs~v~lslgn-~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  480 LNRLTACSLVLLSHVFLSLGN-TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            344556778889999999999 9999999999999999999999999999999999999999  5555555544

>KOG0782|consensus

Probab=98.49  E-value=5.7e-07  Score=84.27  Aligned_cols=93  Identities=33%  Similarity=0.452  Sum_probs=84.1

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHP--VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL  457 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl  457 (480)
                      .++|+..+.||+|+..|+-++|++++++|..  .+..|..|.|+||-|+..++..+.++|++.|+.+-  ..|..|.||-
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~--ktd~kg~tp~  971 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLR--KTDSKGKTPQ  971 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe--ecccCCCChH
Confidence            3456789999999999999999999999875  46778899999999999999999999999999998  5699999999


Q ss_pred             HHHHHcCCHHHHHHHHH
Q psy875          458 HEAANHGHTDIVQALVS  474 (480)
Q Consensus       458 ~~A~~~~~~~~~~~Ll~  474 (480)
                      .-|-..|.+++.-+|-.
T Consensus       972 eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  972 ERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHhcCCchHHHHHhh
Confidence            99999999999988855

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.48  E-value=3.4e-06  Score=65.30  Aligned_cols=101  Identities=13%  Similarity=0.055  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      .+.+++|.++-.+|+.++|+.+|++++..... +....++..+|.+|..+|++++|+..+++++.-.+++ +........
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-ELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHH
Confidence            35678999999999999999999999975543 4446789999999999999999999999998764432 223445556


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      ++.++...|+ +++|+..+..++.
T Consensus        81 ~Al~L~~~gr-~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGR-PKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCC-HHHHHHHHHHHHH
Confidence            7889999999 9999999877764

>PLN03077 Protein ECB2; Provisional

Probab=98.48  E-value=7.1e-06  Score=87.78  Aligned_cols=191  Identities=13%  Similarity=0.156  Sum_probs=120.3

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875           42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS  121 (480)
Q Consensus        42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~  121 (480)
                      .+-..|.+.|++++|.+.|.+.        .....+|+.+... +...|+.++|+..|++..+..... +    ..+|..
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~-~~~~G~~~~A~~lf~~M~~~g~~P-d----~~T~~~  594 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH--------EKDVVSWNILLTG-YVAHGKGSMAVELFNRMVESGVNP-D----EVTFIS  594 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc--------CCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCC-C----cccHHH
Confidence            3445666667777776666553        1123456666666 344488888888887766432211 1    233445


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH
Q psy875          122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE  201 (480)
Q Consensus       122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~  201 (480)
                      +-..+.+.|..++|.++|+.......-......|..+...|.+.|++++|.+.+++. .+    .|. ..+|..|-..+.
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~----~pd-~~~~~aLl~ac~  668 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PI----TPD-PAVWGALLNACR  668 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CC----CCC-HHHHHHHHHHHH
Confidence            556677778888888888766532222222356777788888888888888877653 11    111 344555555665


Q ss_pred             HhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          202 LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       202 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ..|+ .+.+....++.+++      .+.....|..|+.+|...|++++|.+..+...+
T Consensus       669 ~~~~-~e~~e~~a~~l~~l------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        669 IHRH-VELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HcCC-hHHHHHHHHHHHhh------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            6666 77777666666655      233445677889999999999999988887765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.47  E-value=3.5e-06  Score=75.38  Aligned_cols=91  Identities=8%  Similarity=0.015  Sum_probs=47.2

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~  168 (480)
                      |+|++|+..|++.+..++.   ......+++.+|.+|+..|++++|+.+|++.+...++ +....+++.+|.+|..+|++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence            5555555555555554432   2223344455555555555555555555555544433 23345555555555555555


Q ss_pred             HHHHHHHHHHHhhhh
Q psy875          169 NLAVDYFNKELRLHA  183 (480)
Q Consensus       169 ~~A~~~~~~al~~~~  183 (480)
                      ++|..+|++.++.++
T Consensus       234 ~~A~~~~~~vi~~yP  248 (263)
T PRK10803        234 AKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHHHHHHHCc
Confidence            555555555555433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.46  E-value=2.2e-06  Score=76.64  Aligned_cols=103  Identities=10%  Similarity=0.073  Sum_probs=87.2

Q ss_pred             HHHHHHHHHH-HhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          117 TVMRSIKKLY-KKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       117 ~~~~~l~~~y-~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...+..+..+ ...|+|++|+..|++.+...|+... ..+++.+|.+|+..|+|++|+.+|++.++..++ ++....+++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhHHHH
Confidence            3445555544 6679999999999999988877543 678999999999999999999999999988665 466788999


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      .+|.++..+|+ +++|...|++.++..
T Consensus       222 klg~~~~~~g~-~~~A~~~~~~vi~~y  247 (263)
T PRK10803        222 KVGVIMQDKGD-TAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHHC
Confidence            99999999999 999999999887653

>KOG4162|consensus

Probab=98.46  E-value=5.2e-05  Score=74.63  Aligned_cols=209  Identities=17%  Similarity=0.151  Sum_probs=144.1

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      .|+.++..|...|.-..|+...++.... .. .+.....+...+.+|....+.+++++.|..+|+.... .........+
T Consensus       359 ~w~~~als~saag~~s~Av~ll~~~~~~-~~-~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~-~~~~~l~~~~  435 (799)
T KOG4162|consen  359 RWYQLALSYSAAGSDSKAVNLLRESLKK-SE-QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLG-GQRSHLKPRG  435 (799)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHhhccc-cc-CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhh-hhhhhhhhhH
Confidence            3444444444444444555544444443 11 1333455566677778888999999999999998662 2233445667


Q ss_pred             HHHHHHHHHhcC-----------ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875          119 MRSIKKLYKKHD-----------NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP  187 (480)
Q Consensus       119 ~~~l~~~y~~~~-----------~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~  187 (480)
                      +..+|..|..+-           ...++++.++++++..+...  .+.+.++.-|..+++.+.|..+..+++++..+   
T Consensus       436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp--~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~---  510 (799)
T KOG4162|consen  436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP--LVIFYLALQYAEQRQLTSALDYAREALALNRG---  510 (799)
T ss_pred             HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC---
Confidence            778888776653           36678888888887776544  66788999999999999999999999998443   


Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      ..+.+|..++.++..+++ +.+|+.....+++.....      .........+-...++.++|+........+-+
T Consensus       511 ~~~~~whLLALvlSa~kr-~~~Al~vvd~al~E~~~N------~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we  578 (799)
T KOG4162|consen  511 DSAKAWHLLALVLSAQKR-LKEALDVVDAALEEFGDN------HVLMDGKIHIELTFNDREEALDTCIHKLALWE  578 (799)
T ss_pred             ccHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhhhh------hhhchhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence            346788999999999999 999999999998764321      11122234445557888888877776666544

>KOG0506|consensus

Probab=98.45  E-value=2.2e-07  Score=85.17  Aligned_cols=92  Identities=27%  Similarity=0.307  Sum_probs=82.5

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPVK  412 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~  412 (480)
                      ....-.++.|+..|.+..++.+.-.|.|++..+                -+.+|+||+|+..|+.+++++|++. +.+++
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~D----------------yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~  567 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKD----------------YDDRTALHVAAAEGHVEVVKFLLNACKVDPD  567 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccc----------------cccchhheeecccCceeHHHHHHHHHcCCCC
Confidence            444556788999999999999999999988753                4589999999999999999999987 89999


Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q psy875          413 VQDSAGWLPLHEAANHGHTDIVQALVSAG  441 (480)
Q Consensus       413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  441 (480)
                      .+|.+|+|||.-|..++|.+++++|-+.-
T Consensus       568 ~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  568 PKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            99999999999999999999999998863

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.45  E-value=9.8e-06  Score=79.96  Aligned_cols=139  Identities=14%  Similarity=0.197  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHh
Q psy875           36 LASCYISLAQTYKDN---KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-------SFEIVQSTHEKALDL  105 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-------~~~~A~~~~~kAl~~  105 (480)
                      .+.-++..|.-|...   ++..+|+.+|++|+++    .|+.+.++..++.+|....+       +...+.....+++.+
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS----EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            455667777776654   5588999999999999    77777777777777544311       223333444443333


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875          106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN  185 (480)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~  185 (480)
                      ..    .+....++..+|..+...|++++|...+++++...+  . +.+|..+|.++...|++++|++.|++|+.+.+..
T Consensus       414 ~~----~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        414 PE----LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             cc----CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            11    122246788889999999999999999999998875  3 5789999999999999999999999999985543

>KOG4340|consensus

Probab=98.43  E-value=3.2e-05  Score=67.59  Aligned_cols=194  Identities=11%  Similarity=0.053  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-chHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-DKLIR  116 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~~~~~  116 (480)
                      ..+..+|.+|+...+|..|-.+|++.-.+    .|....--..-++..|.- +.|..|+....       ...| +....
T Consensus        45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql----~P~~~qYrlY~AQSLY~A-~i~ADALrV~~-------~~~D~~~L~~  112 (459)
T KOG4340|consen   45 AGLSLLGYCYYRLQEFALAAECYEQLGQL----HPELEQYRLYQAQSLYKA-CIYADALRVAF-------LLLDNPALHS  112 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHh-cccHHHHHHHH-------HhcCCHHHHH
Confidence            35667788888888888888888876655    444433222234442233 55555544332       2222 33344


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      .+...-+.+.+..+++.-+....++    .+..+.+...++.|.+.++.|+|+.|++-|+.|++...    ..+..-+++
T Consensus       113 ~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG----yqpllAYni  184 (459)
T KOG4340|consen  113 RVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG----YQPLLAYNL  184 (459)
T ss_pred             HHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC----CCchhHHHH
Confidence            4555556666666666666555543    23335567788999999999999999999999999832    334456789


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHc------------------CC-----cHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQN------------------KD-----DKLIRTVMRSMKKLYKKHDKFTELEQ  252 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~  252 (480)
                      +.+++..|+ |+.|+++..+.++..-+.                  ++     ......++...+-++.+.|+++-|.+
T Consensus       185 ALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e  262 (459)
T KOG4340|consen  185 ALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE  262 (459)
T ss_pred             HHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence            999999999 999999988877543221                  11     12334555566667777777766553

>KOG3617|consensus

Probab=98.39  E-value=7.2e-05  Score=74.05  Aligned_cols=220  Identities=15%  Similarity=0.195  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHH----h--hccCchHH----------HHHHHHHHHHHHhhccHHHHHHHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRL----H--ARNFPEAV----------KTLGEIGDLYELQEKSFEIVQSTH   99 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~----------~~~~~lg~~y~~~~~~~~~A~~~~   99 (480)
                      +-..|++.|.....+++.+.|+++|+|+-..    .  ..+.+...          ..|...|.. ....|+.+.|+.+|
T Consensus       857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY-lES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY-LESVGEMDAALSFY  935 (1416)
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH-HhcccchHHHHHHH
Confidence            4457888899888999999999999997332    1  11111111          233444665 66669999999999


Q ss_pred             HHHHHhhhcCCCc---------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHHH-----
Q psy875          100 EKALDLARQNKDD---------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLAS-----  153 (480)
Q Consensus       100 ~kAl~~~~~~~~~---------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~-----  153 (480)
                      .+|-..+....-.               ..-..+.+.||..|...|++.+|+.+|.++..-.      .....-.     
T Consensus       936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen  936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred             HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9987654322100               1112356789999999999999999998654221      1111111     


Q ss_pred             -------HHHHHHHHHHhhc-cHHHHHHHHHHH------Hhh------------hhc--CcHHHHHHHHHHHHHHHHhCC
Q psy875          154 -------CYISLAQTYKDNK-QYNLAVDYFNKE------LRL------------HAR--NFPEAVKTLGEIGDLYELQEK  205 (480)
Q Consensus       154 -------~~~~la~~y~~~~-~~~~A~~~~~~a------l~~------------~~~--~~~~~~~~~~~l~~~~~~~~~  205 (480)
                             -....|..|.+.| +++.|...|.+|      +++            ..+  ++..-+..+..-++.+....+
T Consensus      1016 al~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred             HhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence                   1223466666676 788888777653      333            111  222335566677788888788


Q ss_pred             chHHHHHHHHHHHHHHHHc-----------------------C--CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          206 PFELVVSTHEKALDLARQN-----------------------K--DDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       206 ~~~~A~~~~~~al~~~~~~-----------------------~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                       |++|...+-.+-++....                       +  +......++..++++..++|.|..|-+-+.++
T Consensus      1096 -yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1096 -YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence             999988776655322111                       1  12345678889999999999999988766655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.39  E-value=0.00018  Score=63.71  Aligned_cols=207  Identities=20%  Similarity=0.231  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      .......+..+...+.+..++..+..+...  .........+..+|.. ....+.+..++..+.+++......      .
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~  129 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLL-LEALGKYEEALELLEKALALDPDP------D  129 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHH-HHHHhhHHHHHHHHHHHHcCCCCc------c
Confidence            456777888888899999999999888762  1145566677788888 455588999999999998765543      1


Q ss_pred             HHHHHHHH-HHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          117 TVMRSIKK-LYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       117 ~~~~~l~~-~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ......+. ++...|++++|..+|.+++...+. ......+...+..+...+++++|+..+.+++......   ....+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~  206 (291)
T COG0457         130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---DAEALL  206 (291)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---chHHHH
Confidence            11222333 899999999999999999763331 3456677777888889999999999999999884332   467788


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      .++..+...++ +++|...+.+++.....      .......++..+...+.++++...+.+......
T Consensus       207 ~~~~~~~~~~~-~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         207 NLGLLYLKLGK-YEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HhhHHHHHccc-HHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99999999999 99999999999887432      344556666677777778888888887766443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.39  E-value=1.9e-06  Score=59.37  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=27.6

Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          158 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       158 la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      +|..+...|+|++|+..|+++++.    .|....++..+|.++..+|+ +++|+.+|+++++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGR-YDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence            444455555555555555555444    33344445555555555555 5555555554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.39  E-value=1.8e-06  Score=59.55  Aligned_cols=62  Identities=18%  Similarity=0.387  Sum_probs=54.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .+|..+...|+|++|+..|++++...  |....++..+|.++..+|++++|+.+|+++++..++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            57899999999999999999999776  556789999999999999999999999999988443

>KOG0783|consensus

Probab=98.38  E-value=3.8e-07  Score=89.32  Aligned_cols=89  Identities=24%  Similarity=0.317  Sum_probs=75.9

Q ss_pred             hhhhhHhhhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCC
Q psy875          303 KEDQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK  382 (480)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~  382 (480)
                      .....+-+++-|++++|.++..+..                      +++++|+.+|+|++.++.-              
T Consensus        41 c~n~anikD~~GR~alH~~~S~~k~----------------------~~l~wLlqhGidv~vqD~E--------------   84 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSENKN----------------------SFLRWLLQHGIDVFVQDEE--------------   84 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccchh----------------------HHHHHHHhcCceeeecccc--------------
Confidence            3344566777788888887766555                      8999999999999998653              


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHc
Q psy875          383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANH  428 (480)
Q Consensus       383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~  428 (480)
                       +|.||||.|..+|+++++-.|+.+|......|.+|.+||...++-
T Consensus        85 -SG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   85 -SGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             -ccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhc
Confidence             499999999999999999999999999999999999999987773

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.36  E-value=0.0002  Score=62.11  Aligned_cols=173  Identities=13%  Similarity=0.086  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLAS  153 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~  153 (480)
                      ...+++-|.. ..+.|+|++|..+|++.....+   -.+....+...++..+.+.++|++|+.+.++.+...|. ++...
T Consensus        34 ~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p---~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          34 ASELYNEGLT-ELQKGNYEEAIKYFEALDSRHP---FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCC---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            4456666777 5666999999999988775433   33444677888999999999999999999998887765 66677


Q ss_pred             HHHHHHHHHHhh--------ccHHHHHHHHHHHHhhhhcC-------------cHHHHHHHHHHHHHHHHhCCchHHHHH
Q psy875          154 CYISLAQTYKDN--------KQYNLAVDYFNKELRLHARN-------------FPEAVKTLGEIGDLYELQEKPFELVVS  212 (480)
Q Consensus       154 ~~~~la~~y~~~--------~~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~A~~  212 (480)
                      +++..|.++...        .-..+|+.-|++.+.-+++.             ....+..-..+|..|.+.|. |--|..
T Consensus       110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~-~~AA~n  188 (254)
T COG4105         110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA-YVAAIN  188 (254)
T ss_pred             HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHH
Confidence            888888777633        33345666666666554441             11234445678999999999 999998


Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875          213 THEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       213 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      .++..++-   ..+.+....++..+...|.++|-.++|....+
T Consensus       189 R~~~v~e~---y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~  228 (254)
T COG4105         189 RFEEVLEN---YPDTSAVREALARLEEAYYALGLTDEAKKTAK  228 (254)
T ss_pred             HHHHHHhc---cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            88887654   55667788899999999999999999887654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=5.5e-05  Score=63.09  Aligned_cols=203  Identities=12%  Similarity=0.049  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .+.-+..++..|..|-..|-..-|.--|.+++.+    .|....+++.+|.. +...|+|+.|.+.|...+++.+.    
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai----~P~m~~vfNyLG~Y-l~~a~~fdaa~eaFds~~ELDp~----  131 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIY-LTQAGNFDAAYEAFDSVLELDPT----  131 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----CCCcHHHHHHHHHH-HHhcccchHHHHHhhhHhccCCc----
Confidence            4567888999999999999999999999999999    78888888889877 56669999999999999988443    


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH-HHhhhhcCcHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK-ELRLHARNFPEAVK  191 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~-al~~~~~~~~~~~~  191 (480)
                        .-.+..|.|..+..-|+|+-|.+-+.+-.+.++....-..+..+-.   ..-++.+|..-+.+ +....+ .......
T Consensus       132 --y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~-e~WG~~i  205 (297)
T COG4785         132 --YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDK-EQWGWNI  205 (297)
T ss_pred             --chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccH-hhhhHHH
Confidence              2456788999999999999999999888877766544333333322   22356666655433 332211 1111111


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                             +-+..|+ ..+ ...++++..-++... -.....+++..||+.|...|+.++|...++-++.
T Consensus       206 -------V~~yLgk-iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         206 -------VEFYLGK-ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             -------HHHHHhh-ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                   1122233 211 122333332222111 1234567888899999999999998888887654

>KOG4555|consensus

Probab=98.34  E-value=4.1e-05  Score=58.33  Aligned_cols=101  Identities=20%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ...+-..|......|+.+.|++.|.+++.+    -|..+.+|++.++.|..+ |+.++|+.-+++|++++...  .+...
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~--trtac  115 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCL----APERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQ--TRTAC  115 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHh----cccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCcc--chHHH
Confidence            444555677777888999999999999888    777788888888886666 88899999999998886532  44556


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhc
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLS  144 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~  144 (480)
                      .++...|.+|..+|+-+.|..-|..+-.
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence            6788888888888888888888886653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.33  E-value=0.00017  Score=62.57  Aligned_cols=171  Identities=13%  Similarity=0.086  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      -+.-+++-|....+.|+|++|++.|+..... -...+..-.+...++.+++.. ++|+.|+.+.++-+.+.+..   +..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~-~~y~~A~~~~drFi~lyP~~---~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKN-GEYDLALAYIDRFIRLYPTH---PNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCC---CCh
Confidence            4567889999999999999999999999877 444444556778889996666 99999999999999887654   445


Q ss_pred             HHHHHHHHHHHHhcC--------ChHHHHHHHHHHhcccccc---------------cHHHHHHHHHHHHHhhccHHHHH
Q psy875          116 RTVMRSIKKLYKKHD--------NLDSACSELHTVLSSDLCK---------------DLASCYISLAQTYKDNKQYNLAV  172 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~--------~~~~A~~~~~~~l~~~~~~---------------~~~~~~~~la~~y~~~~~~~~A~  172 (480)
                      ..+++..|..+...=        --.+|+.-++..+...|+.               .++.--..+|..|.+.|.|.-|+
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~  187 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI  187 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            566777777765442        2345666777777766662               12333445799999999999999


Q ss_pred             HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHH
Q psy875          173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVST  213 (480)
Q Consensus       173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  213 (480)
                      ..+++.++..+. .+..-.++..+..+|..+|- .++|...
T Consensus       188 nR~~~v~e~y~~-t~~~~eaL~~l~eaY~~lgl-~~~a~~~  226 (254)
T COG4105         188 NRFEEVLENYPD-TSAVREALARLEEAYYALGL-TDEAKKT  226 (254)
T ss_pred             HHHHHHHhcccc-ccchHHHHHHHHHHHHHhCC-hHHHHHH
Confidence            999999988554 44556788889999999999 8877553

>KOG2047|consensus

Probab=98.28  E-value=0.00016  Score=69.91  Aligned_cols=216  Identities=14%  Similarity=0.150  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC----
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK----  110 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~----  110 (480)
                      .....+..+|..|...|+.+.|...|++|.+.--+...+.+..|...|.. -....+++.|+...++|...-+...    
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem-Elrh~~~~~Al~lm~~A~~vP~~~~~~~y  463 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM-ELRHENFEAALKLMRRATHVPTNPELEYY  463 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence            35667899999999999999999999999987333345678889999988 6666899999999999986543311    


Q ss_pred             --Cc------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          111 --DD------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       111 --~~------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                        ..      .....++...+.+-...|-++.-...|.+.+...-.  ...+-.|.|..+....-+++|.+.|++.+.++
T Consensus       464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--TPqii~NyAmfLEeh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--TPQIIINYAMFLEEHKYFEESFKAYERGISLF  541 (835)
T ss_pred             cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence              11      222345667788888889999999999988865432  23566788888889899999999999999987


Q ss_pred             hc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          183 AR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       183 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      +- +.......|......-+...+ .+.|...|++|++...    +.....+|...+.+-...|--..|+..|+++.
T Consensus       542 k~p~v~diW~tYLtkfi~rygg~k-lEraRdLFEqaL~~Cp----p~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  542 KWPNVYDIWNTYLTKFIKRYGGTK-LERARDLFEQALDGCP----PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             CCccHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            64 223333444444444333446 8999999999998431    34445566677777777888888887777653

>KOG0521|consensus

Probab=98.27  E-value=9.6e-07  Score=89.99  Aligned_cols=88  Identities=43%  Similarity=0.585  Sum_probs=81.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875          384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH  463 (480)
Q Consensus       384 ~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~  463 (480)
                      .|.|+||.|+..+...++++|+++|+++|.+|..|+||+|.+...|+...+..|+++|++.+  +.+..|.+|+++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~--a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN--AFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc--ccCccCcchhhHHhhh
Confidence            48999999999999999999999999999999999999999999999999999999999999  5589999999999877


Q ss_pred             CCHHHHHHHH
Q psy875          464 GHTDIVQALV  473 (480)
Q Consensus       464 ~~~~~~~~Ll  473 (480)
                      .+.+++.++.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            7777766553

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.27  E-value=0.0014  Score=60.10  Aligned_cols=216  Identities=10%  Similarity=0.002  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ..+.....-|..-...|+|.+|.+...++-+.    .+.-..+|..-+.. -.++|+++.|-.|+.+|-+....   +. 
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~----~e~p~l~~l~aA~A-A~qrgd~~~an~yL~eaae~~~~---~~-  152 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----GEQPVLAYLLAAEA-AQQRGDEDRANRYLAEAAELAGD---DT-  152 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----CcchHHHHHHHHHH-HHhcccHHHHHHHHHHHhccCCC---ch-
Confidence            34666777888888899999999999987665    45555556666777 66669999999999988766432   22 


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh-------------
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL-------------  181 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-------------  181 (480)
                       ..++...+.+....|+++.|..-..+.+...+.+.  .+......+|...|+|.+...+..+.-+.             
T Consensus       153 -l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~  229 (400)
T COG3071         153 -LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ  229 (400)
T ss_pred             -HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence             34566788999999999999999999987775543  56666789999999999888776543211             


Q ss_pred             ------hhc-----Cc--------------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH---------H-----
Q psy875          182 ------HAR-----NF--------------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA---------R-----  222 (480)
Q Consensus       182 ------~~~-----~~--------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~---------~-----  222 (480)
                            .++     ..              ...+..-..++.-+...|. .++|.+..+++++-.         .     
T Consensus       230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~-~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~  308 (400)
T COG3071         230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD-HDEAQEIIEDALKRQWDPRLCRLIPRLRPG  308 (400)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhccChhHHHHHhhcCCC
Confidence                  000     00              0113344556777788899 999999999988411         0     


Q ss_pred             -----------HcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          223 -----------QNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       223 -----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                                 .....+.....+..||..+.+.+.+.+|..+++.+.....+
T Consensus       309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s  360 (400)
T COG3071         309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS  360 (400)
T ss_pred             CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence                       00111222266778999999999999999999977765443

>KOG3785|consensus

Probab=98.25  E-value=6.6e-05  Score=67.24  Aligned_cols=211  Identities=14%  Similarity=0.091  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----------H
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL----------D  104 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl----------~  104 (480)
                      +....-.++|.+++..|+|++|+..|.-+.+-    ..--+..+.++|.+++.. |.|.+|.....+|-          .
T Consensus        55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyL-g~Y~eA~~~~~ka~k~pL~~RLlfh  129 (557)
T KOG3785|consen   55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFYL-GQYIEAKSIAEKAPKTPLCIRLLFH  129 (557)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHH-HHHHHHHHHHhhCCCChHHHHHHHH
Confidence            33567788999999999999999999876553    223345567888885555 99999988766652          2


Q ss_pred             hhhcCCCchHHHHHHH----------HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875          105 LARQNKDDKLIRTVMR----------SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY  174 (480)
Q Consensus       105 ~~~~~~~~~~~~~~~~----------~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~  174 (480)
                      ++-+.++.+.+.....          .++.+.+..-.|.+|++.|++.+...  ++....-.++|.+|.++.=|+-+.+.
T Consensus       130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqev  207 (557)
T KOG3785|consen  130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEV  207 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence            3344445444444333          55666777778999999999998655  55556677899999999999888877


Q ss_pred             HHHHHhhhhcCcHHHHHHHHHHHHHHHHh--CC---------------chHHHHHHHHHHHHHHHHc--------CCcHH
Q psy875          175 FNKELRLHARNFPEAVKTLGEIGDLYELQ--EK---------------PFELVVSTHEKALDLARQN--------KDDKL  229 (480)
Q Consensus       175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~--~~---------------~~~~A~~~~~~al~~~~~~--------~~~~~  229 (480)
                      ++--++-.++    ...+.+..+...++.  |+               .|..+...++.-+-+++..        +-...
T Consensus       208 l~vYL~q~pd----StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~  283 (557)
T KOG3785|consen  208 LKVYLRQFPD----STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH  283 (557)
T ss_pred             HHHHHHhCCC----cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence            7666655332    222333333333332  22               0112221111111000000        00122


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          230 IRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                      +.++..+|.-.|.++++.++|....+.
T Consensus       284 IPEARlNL~iYyL~q~dVqeA~~L~Kd  310 (557)
T KOG3785|consen  284 IPEARLNLIIYYLNQNDVQEAISLCKD  310 (557)
T ss_pred             ChHhhhhheeeecccccHHHHHHHHhh
Confidence            345667888899999999998876653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.25  E-value=2.8e-05  Score=73.41  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=101.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                      .|-.++...++++.|+..+++.....+  +   +...++.++...++..+|+..++++++..    +..+..+...+..+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p--e---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~----p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDP--E---VAVLLARVYLLMNEEVEAIRLLNEALKEN----PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCC--c---HHHHHHHHHHhcCcHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence            344556667899999999999876653  2   34558999999999999999999999763    33377888899999


Q ss_pred             HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      ...++ ++.|+...++|..+      .|.....+..|+.+|..+|++++|+..+..+
T Consensus       245 l~k~~-~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  245 LSKKK-YELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HhcCC-HHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999 99999999999988      6778889999999999999999999877644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.22  E-value=3.4e-05  Score=76.16  Aligned_cols=135  Identities=19%  Similarity=0.121  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHH--hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC--------ChHHHHHHHHHHhc
Q psy875           75 VKTLGEIGDLYEL--QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD--------NLDSACSELHTVLS  144 (480)
Q Consensus        75 ~~~~~~lg~~y~~--~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~--------~~~~A~~~~~~~l~  144 (480)
                      +..++..|.-|..  ..+++..|+.+|++|+++.+.      .+.++..++.+|....        +..++....++++.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            3344444554322  235588999999999998543      3555555566554432        23455555666555


Q ss_pred             ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          145 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       145 ~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      ....+....+|..+|..+...|++++|..++++|+.+.    +. ..+|..+|.++...|+ +++|++.|++|+.+.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps-~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L~  483 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MS-WLNYVLLGKVYELKGD-NRLAADAYSTAFNLR  483 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC
Confidence            43344446788889999999999999999999999993    33 6789999999999999 999999999998773

>KOG0782|consensus

Probab=98.20  E-value=1.7e-05  Score=74.63  Aligned_cols=102  Identities=26%  Similarity=0.291  Sum_probs=87.3

Q ss_pred             CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHH
Q psy875          325 NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL  404 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l  404 (480)
                      ++.+.-..+...-++||.|+..|+.++|++++++|..-....              .+..|+|+||-|+..++..+..+|
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~--------------~de~get~lhkaa~~~~r~vc~~l  953 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDM--------------ADETGETALHKAACQRNRAVCQLL  953 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHH--------------HhhhhhHHHHHHHHhcchHHHHHH
Confidence            444455666777799999999999999999999997543321              123499999999999999999999


Q ss_pred             HhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy875          405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA  440 (480)
Q Consensus       405 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  440 (480)
                      ++.|+..-..|..|.||-..|-..|..++..||-.+
T Consensus       954 vdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  954 VDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999999998765

>KOG4234|consensus

Probab=98.19  E-value=3.5e-05  Score=63.41  Aligned_cols=98  Identities=20%  Similarity=0.250  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLC---KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      .+..-|.-++..|+|++|..-|..++...+.   .....+|.|-|.+..+++.++.|++-..+++++    .|....++.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----~pty~kAl~  172 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----NPTYEKALE  172 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----CchhHHHHH
Confidence            3445678889999999999999999987765   233678899999999999999999999999999    566677888


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ..|.+|.++.+ |++|++-|++.++.
T Consensus       173 RRAeayek~ek-~eealeDyKki~E~  197 (271)
T KOG4234|consen  173 RRAEAYEKMEK-YEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHh
Confidence            88999999999 99999999998876

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.17  E-value=1.7e-05  Score=72.43  Aligned_cols=153  Identities=17%  Similarity=0.094  Sum_probs=100.9

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875           80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA  159 (480)
Q Consensus        80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la  159 (480)
                      ..|.+ +...|++++|++.+.+.       ++    .........+|..+++++.|.+.++.......+..    ..+++
T Consensus       107 ~~A~i-~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~----l~qLa  170 (290)
T PF04733_consen  107 LAATI-LFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI----LTQLA  170 (290)
T ss_dssp             HHHHH-HCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH----HHHHH
T ss_pred             HHHHH-HHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH----HHHHH
Confidence            33566 44458888877666442       11    23334566789999999999999988776654422    22333


Q ss_pred             H--HHHhh--ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875          160 Q--TYKDN--KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR  235 (480)
Q Consensus       160 ~--~y~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  235 (480)
                      .  +....  +++.+|...|++..+.    .+..+..++.++.++..+|+ |++|...+++|+..      .+....++.
T Consensus       171 ~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~~------~~~~~d~La  239 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALEK------DPNDPDTLA  239 (290)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-------CCHHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh------ccCCHHHHH
Confidence            2  33333  4699999999985543    23345678889999999999 99999999888643      233456788


Q ss_pred             HHHHHHHHcCCh-HHHHHHHHHHHH
Q psy875          236 SMKKLYKKHDKF-TELEQIKTELKS  259 (480)
Q Consensus       236 ~l~~~~~~~g~~-~~A~~~~~~~~~  259 (480)
                      ++..+...+|+. +.+.++..+...
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHH
Confidence            899999999998 556666665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2796|consensus

Probab=98.16  E-value=0.00021  Score=61.49  Aligned_cols=147  Identities=15%  Similarity=0.121  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      +.+....+.+.+..++.-.|.|.-++..+.+.++.   +++........+|.+ .++.||.+.|..|++..-+...+..+
T Consensus       172 W~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~-~MQ~GD~k~a~~yf~~vek~~~kL~~  247 (366)
T KOG2796|consen  172 WRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRI-SMQIGDIKTAEKYFQDVEKVTQKLDG  247 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHhhhhc
Confidence            45567778889999999999999999999999986   234444455678999 88889999999999988877666666


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      ...-..+..+.+.+|.-.++|..|...|.+.+..+  +..+.+-++.|.+....|+...|++..+.+++..+.
T Consensus       248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             cchhHHHHhhhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            66667788999999999999999999999888554  344566788999999999999999999999888555

>KOG3617|consensus

Probab=98.15  E-value=0.00062  Score=67.74  Aligned_cols=210  Identities=15%  Similarity=0.135  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----HhhhcCCCchHH----------HHHH
Q psy875           55 LAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL----DLARQNKDDKLI----------RTVM  119 (480)
Q Consensus        55 ~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl----~~~~~~~~~~~~----------~~~~  119 (480)
                      +++..+.+|+++. ..+..-.-.+|++.|.- ....++.+.|++||+|+-    ++.+-..+.+..          ...|
T Consensus       837 Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~-Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~  915 (1416)
T KOG3617|consen  837 QSQGMWSEAFEIAETKDRIHLRNTYYNYAKY-LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY  915 (1416)
T ss_pred             HhcccHHHHHHHHhhccceehhhhHHHHHHH-HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence            3333444444443 22222234567777776 455599999999999864    222221111111          1345


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhccc-------------------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHH--
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSD-------------------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKE--  178 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~-------------------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a--  178 (480)
                      ..-|......|+.+-|+.+|..+-...                   ....--.+.+.||+-|...|++.+|+.+|.+|  
T Consensus       916 ~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  916 SWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            567788888999999999998544211                   11112235667999999999999999999875  


Q ss_pred             ----HhhhhcCcHH--H--------HHHHHHHHHHHHHhC-CchHHHHHHHHHH------HHHHHHcCC-----------
Q psy875          179 ----LRLHARNFPE--A--------VKTLGEIGDLYELQE-KPFELVVSTHEKA------LDLARQNKD-----------  226 (480)
Q Consensus       179 ----l~~~~~~~~~--~--------~~~~~~l~~~~~~~~-~~~~~A~~~~~~a------l~~~~~~~~-----------  226 (480)
                          +++.+.+...  .        ..-....|..|...| + ...|...|.+|      ++++-+...           
T Consensus       996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen  996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence                4555442111  0        111233456666676 5 77777766653      333322221           


Q ss_pred             -cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          227 -DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       227 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                       ...-...+..-++++....+|++|..++-.+.++...+..
T Consensus      1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred             CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1222345667899999999999999998888887766654

>KOG2376|consensus

Probab=98.15  E-value=0.00063  Score=65.29  Aligned_cols=149  Identities=10%  Similarity=0.035  Sum_probs=79.8

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc--------
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD--------  112 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~--------  112 (480)
                      +..+.+.++.+..++|++.++-+-.    ..   -.+...-|++ ...+++|++|...|+...+-.....+.        
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~~~~----~~---~~ll~L~AQv-lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a  154 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKGLDR----LD---DKLLELRAQV-LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA  154 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhcccc----cc---hHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            5677778888888888888772111    11   1233345777 444488888888887664322111110        


Q ss_pred             -----------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc--------cc-----ccHHHHHHHHHHHH
Q psy875          113 -----------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD--------LC-----KDLASCYISLAQTY  162 (480)
Q Consensus       113 -----------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~--------~~-----~~~~~~~~~la~~y  162 (480)
                                       ...-..++|.+-++...|+|.+|++.+++++.+.        ..     .++..+...|+.++
T Consensus       155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl  234 (652)
T KOG2376|consen  155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL  234 (652)
T ss_pred             HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence                             0111234466666666666666666666552111        10     23345555666666


Q ss_pred             HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      ..+|+.++|...|...++....+.+..+.+-+||-
T Consensus       235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv  269 (652)
T KOG2376|consen  235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV  269 (652)
T ss_pred             HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh
Confidence            66666666666666555554444444444444443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.15  E-value=0.001  Score=67.06  Aligned_cols=220  Identities=10%  Similarity=0.007  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ..+..--..|.+...+|++++|+++.+.++... .......+.++..+|.+ ....|++++|..+.+.+.+++++.+...
T Consensus       456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a-~~~~G~~~~Al~~~~~a~~~a~~~~~~~  534 (894)
T COG2909         456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA-AHIRGELTQALALMQQAEQMARQHDVYH  534 (894)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH-HHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence            455566667888889999999999999999985 33344456778889999 5555999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHhcCC--hHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---Cc
Q psy875          114 LIRTVMRSIKKLYKKHDN--LDSACSELHTVLS--SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NF  186 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~--~~~A~~~~~~~l~--~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~  186 (480)
                      ....+....+.+...+|+  +++...-+...-.  ....+.-.......+.++...-+++.+..-..++++....   .+
T Consensus       535 l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~  614 (894)
T COG2909         535 LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQP  614 (894)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccch
Confidence            888888899999999993  4444444442211  1111211111222233333333367777666666666333   22


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                      ......++.++.+++..|+ +++|...+.+......... .......++.....+...+|+..+|.....+
T Consensus       615 ~~~~~~~~~LA~l~~~~Gd-l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         615 LLSRLALSMLAELEFLRGD-LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            2333344689999999999 9999999999988877664 3344566667777788899999998887765

>KOG0522|consensus

Probab=98.14  E-value=7.2e-06  Score=76.86  Aligned_cols=60  Identities=33%  Similarity=0.681  Sum_probs=54.6

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA  440 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  440 (480)
                      .|+.|.||||.|+..|+...++.|+..|+++..+|..||+|||.|+..|...++..++.+
T Consensus        51 ~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   51 RDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            356799999999999999999999999999999999999999999999998877666554

>PRK15331 chaperone protein SicA; Provisional

Probab=98.13  E-value=0.00014  Score=58.82  Aligned_cols=101  Identities=15%  Similarity=0.107  Sum_probs=82.5

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      +.......+..|.-++..|++++|...|+-.....+  .....+..||.++..+++|++|+..|..+..+..+++    .
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp----~  106 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY----R  106 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC----C
Confidence            344556667889999999999999999996554332  2345678999999999999999999999988855443    3


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      ..+..|.+|..+|+ ...|...|..++.
T Consensus       107 p~f~agqC~l~l~~-~~~A~~~f~~a~~  133 (165)
T PRK15331        107 PVFFTGQCQLLMRK-AAKARQCFELVNE  133 (165)
T ss_pred             ccchHHHHHHHhCC-HHHHHHHHHHHHh
Confidence            46789999999999 9999999999876

>KOG0511|consensus

Probab=98.12  E-value=1.3e-05  Score=71.83  Aligned_cols=61  Identities=30%  Similarity=0.316  Sum_probs=57.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy875          386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND  446 (480)
Q Consensus       386 ~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  446 (480)
                      .--|..||+.|+.+.|+.|++-|.++|.+|....+||.+|+..||.++|++|+++|+-...
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            4458899999999999999999999999999999999999999999999999999997763

>KOG4234|consensus

Probab=98.12  E-value=3.5e-05  Score=63.41  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR  231 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  231 (480)
                      ..+-.-|+-++..|+|++|..-|..|+++++. ........|.+-|.+..++++ ++.|+.-+.+|+++      .+...
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel------~pty~  168 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIEL------NPTYE  168 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhc------CchhH
Confidence            34455688899999999999999999999887 445667788899999999999 99999999999998      67778


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          232 TVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .++...+.+|.++..|++|+.-|++..++
T Consensus       169 kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  169 KALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            88889999999999999999999887764

>KOG4340|consensus

Probab=98.12  E-value=0.0002  Score=62.78  Aligned_cols=186  Identities=12%  Similarity=0.048  Sum_probs=129.7

Q ss_pred             hccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875           48 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK  127 (480)
Q Consensus        48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~  127 (480)
                      ....+|..|++++..-.+.    .+..-..+..+|.+||.. .+|..|-.+|.+.-...++.      ..--.--+...+
T Consensus        21 I~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql~P~~------~qYrlY~AQSLY   89 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQLHPEL------EQYRLYQAQSLY   89 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHH------HHHHHHHHHHHH
Confidence            3456788888887765555    443344567889997777 88999999998877665432      222234466677


Q ss_pred             hcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCch
Q psy875          128 KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF  207 (480)
Q Consensus       128 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (480)
                      +.+.|..|+..........  .-...+...-+.+.+..+++.-+....++--      ....+....+.|.+.++.|+ |
T Consensus        90 ~A~i~ADALrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp------~en~Ad~~in~gCllykegq-y  160 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP------SENEADGQINLGCLLYKEGQ-Y  160 (459)
T ss_pred             HhcccHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhcc------CCCccchhccchheeecccc-H
Confidence            8888999988877655321  1123444445666666677776666554321      12346678889999999999 9


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      +.|.+-|+.|+...   +..   .-+-++++.++.+.|++..|+++-.+.++
T Consensus       161 EaAvqkFqaAlqvs---Gyq---pllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  161 EAAVQKFQAALQVS---GYQ---PLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             HHHHHHHHHHHhhc---CCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            99999999998762   222   33456789999999999999999988776

>KOG2384|consensus

Probab=98.11  E-value=8.7e-06  Score=65.87  Aligned_cols=83  Identities=23%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             CccccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875          376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW  454 (480)
Q Consensus       376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~  454 (480)
                      ..++.+|--|+|+++.|+..|+.+.+.+|+..| +.+...|..|.+++.+|-..|+..++..|.+.-.+.........+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e   82 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDE   82 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCC
Confidence            345566667888888888888888888888888 7788888888888888888888888888887744444322223444


Q ss_pred             cHHH
Q psy875          455 LPLH  458 (480)
Q Consensus       455 tpl~  458 (480)
                      ++..
T Consensus        83 ~lfy   86 (223)
T KOG2384|consen   83 ALFY   86 (223)
T ss_pred             ccch
Confidence            4443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=3.4e-05  Score=67.39  Aligned_cols=100  Identities=12%  Similarity=0.109  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccccccc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      .++.|.-++..|+|..|..-|...+...|... ...+++.||.+++.+|+|+.|...|..+.+-.++ .+..+..++-+|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHH
Confidence            67888899999999999999999998888744 4789999999999999999999999999887555 456688999999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .+...+|+ .++|...|++.++.
T Consensus       223 ~~~~~l~~-~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGN-TDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcC-HHHHHHHHHHHHHH
Confidence            99999999 99999999998764

>KOG0520|consensus

Probab=98.10  E-value=4e-06  Score=85.05  Aligned_cols=130  Identities=23%  Similarity=0.269  Sum_probs=97.4

Q ss_pred             CCCCcCCCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy875          329 SNLNLYNIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ  407 (480)
Q Consensus       329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~  407 (480)
                      +....+.+.++++.++..++..+++.+++. |......                +.+|...+|+++..|....+..+.-.
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el----------------d~d~qgV~hfca~lg~ewA~ll~~~~  630 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL----------------DRDGQGVIHFCAALGYEWAFLPISAD  630 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh----------------cccCCChhhHhhhcCCceeEEEEeec
Confidence            345677788899999999999999888886 4333322                23477778886666655555555567


Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC----ccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND----KVQDSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       408 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      |..++.+|..||||||||+..|+..++..|+..|++...    ....-.|.|+-.+|..+|+..+..+|-+
T Consensus       631 ~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  631 GVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             ccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            889999999999999999999999999999987766653    1122358899999999998887776644

>PRK15331 chaperone protein SicA; Provisional

Probab=98.10  E-value=6e-05  Score=60.83  Aligned_cols=109  Identities=10%  Similarity=-0.013  Sum_probs=79.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875           26 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL  105 (480)
Q Consensus        26 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~  105 (480)
                      +....+..++.....+..|.-++..|++++|...|+-..-+    .+....-+..+|.++... ++|++|+..|-.|..+
T Consensus        26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----DFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence            33445556667777888888888889999998888876666    333344567888885444 8899998888888877


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875          106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS  145 (480)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~  145 (480)
                      ....+.+      .+..|.+|+.+|+.++|..+|+.++..
T Consensus       101 ~~~dp~p------~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        101 LKNDYRP------VFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             ccCCCCc------cchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence            6543332      456788888888888888888877753

>KOG3609|consensus

Probab=98.10  E-value=1.9e-05  Score=78.53  Aligned_cols=127  Identities=22%  Similarity=0.149  Sum_probs=96.5

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      .....-...|+..|+...|+..++........            .+-.|+-|.++|+.|..+.+.+++++|++.+..+  
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~ln------------inc~d~lGr~al~iai~nenle~~eLLl~~~~~~--   88 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLN------------INCRDPLGRLALHIAIDNENLELQELLLDTSSEE--   88 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccc------------hhccChHhhhceecccccccHHHHHHHhcCcccc--
Confidence            33445667899999999998887765442211            1123455999999999999999999999987555  


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC--------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPND--------KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~--------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                           .-+|-.|+..|..++|+.++.+-.....        ...-.-+.||+..|+..++.+|+++|+.+|+.+
T Consensus        89 -----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   89 -----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence                 2378899999999999999987332210        011234789999999999999999999999976

>KOG3616|consensus

Probab=98.10  E-value=0.00043  Score=67.96  Aligned_cols=208  Identities=13%  Similarity=0.142  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHH------HHHhhccCchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHH--------
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKE------LRLHARNFPEA-VKTLGEIGDLYELQEKSFEIVQSTHEKAL--------  103 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~-~~~~~~lg~~y~~~~~~~~~A~~~~~kAl--------  103 (480)
                      .|-..|.+|-...++++|++||++.      +++..-..|.. ...-...|.- ..+.|+++.|+.+|-+|-        
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~h-l~~~~q~daainhfiea~~~~kaiea  741 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDH-LEQIGQLDAAINHFIEANCLIKAIEA  741 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHH-HHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence            4556677777788889999988764      33320011221 1111222433 444477777776654443        


Q ss_pred             -----------HhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875          104 -----------DLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV  172 (480)
Q Consensus       104 -----------~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~  172 (480)
                                 .+.....+.......|-.++.-|...|+|+.|.+.|.++-          ....--..|.+.|+|++|.
T Consensus       742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHH
Confidence                       2222222222222334577788888888888888887642          1122334567778888887


Q ss_pred             HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHH------HHHHHHHHHcCC------------cHHHHHHH
Q psy875          173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH------EKALDLARQNKD------------DKLIRTVM  234 (480)
Q Consensus       173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~------~~al~~~~~~~~------------~~~~~~~~  234 (480)
                      +...+...     +......|...+.-..+.|+ |.+|...|      .+|+.+..+.+-            .....+..
T Consensus       812 kla~e~~~-----~e~t~~~yiakaedldehgk-f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~  885 (1636)
T KOG3616|consen  812 KLAEECHG-----PEATISLYIAKAEDLDEHGK-FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH  885 (1636)
T ss_pred             HHHHHhcC-----chhHHHHHHHhHHhHHhhcc-hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence            76665432     33444556666666777777 76666554      244444444332            23345667


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          235 RSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       235 ~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      ..++.-+...|+...|...+-++...+..
T Consensus       886 ~~f~~e~e~~g~lkaae~~flea~d~kaa  914 (1636)
T KOG3616|consen  886 KHFAKELEAEGDLKAAEEHFLEAGDFKAA  914 (1636)
T ss_pred             HHHHHHHHhccChhHHHHHHHhhhhHHHH
Confidence            78899999999999999888877665544

>KOG3785|consensus

Probab=98.09  E-value=0.00037  Score=62.59  Aligned_cols=84  Identities=14%  Similarity=0.012  Sum_probs=55.7

Q ss_pred             ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875           49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK  128 (480)
Q Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~  128 (480)
                      ...+|.-|+..++-.+.. .  ..+....-..+|.+|+.. |+|++|+..|.-+..-  .  +.+  +....+++-++..
T Consensus        34 s~rDytGAislLefk~~~-~--~EEE~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~~--~--~~~--~el~vnLAcc~Fy  103 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNL-D--REEEDSLQLWIAHCYFHL-GDYEEALNVYTFLMNK--D--DAP--AELGVNLACCKFY  103 (557)
T ss_pred             hcccchhHHHHHHHhhcc-c--hhhhHHHHHHHHHHHHhh-ccHHHHHHHHHHHhcc--C--CCC--cccchhHHHHHHH
Confidence            456888888887776655 2  122234456678885554 8999998888766541  1  111  3345688888888


Q ss_pred             cCChHHHHHHHHHH
Q psy875          129 HDNLDSACSELHTV  142 (480)
Q Consensus       129 ~~~~~~A~~~~~~~  142 (480)
                      +|.|.+|.....++
T Consensus       104 Lg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  104 LGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHhhC
Confidence            89898888876654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.08  E-value=9.4e-05  Score=69.89  Aligned_cols=114  Identities=17%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             HhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc
Q psy875           87 LQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK  166 (480)
Q Consensus        87 ~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~  166 (480)
                      ...+.++.|+..+++..+..+         .+...++.++...++-.+|+..+.+++...+.  -+..+...|..+...+
T Consensus       180 ~~t~~~~~ai~lle~L~~~~p---------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~--d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDP---------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ--DSELLNLQAEFLLSKK  248 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCC---------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC
Confidence            334889999999988664421         13446899999999999999999999965543  3677888899999999


Q ss_pred             cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy875          167 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK  216 (480)
Q Consensus       167 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  216 (480)
                      +++.|++..++++++    .|....+|..|+.+|...|+ ++.|+..++.
T Consensus       249 ~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d-~e~ALlaLNs  293 (395)
T PF09295_consen  249 KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGD-FENALLALNS  293 (395)
T ss_pred             CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCC-HHHHHHHHhc
Confidence            999999999999999    67778899999999999999 9999876654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555|consensus

Probab=98.07  E-value=0.00016  Score=55.23  Aligned_cols=101  Identities=23%  Similarity=0.193  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      ..+-.-|......|+.+.|++.|.+++...|  ..+.+|+|-+..+.-+|+.++|++-+++++++..........++..-
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            3445667888899999999999999997764  45689999999999999999999999999999877777788899999


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      |.+|..+|+ -+.|..-|+.|-.+
T Consensus       122 g~lyRl~g~-dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  122 GLLYRLLGN-DDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHhCc-hHHHHHhHHHHHHh
Confidence            999999999 89999999998765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.04  E-value=1.7e-05  Score=74.45  Aligned_cols=69  Identities=16%  Similarity=0.071  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH-HHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-SCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      +.....+.++|.+|..+|+|++|+..|++++...++...+ .+|+++|.+|..+|++++|+.++++++++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5667899999999999999999999999999988775433 67999999999999999999999999987

>KOG1070|consensus

Probab=98.04  E-value=0.00082  Score=70.65  Aligned_cols=195  Identities=14%  Similarity=0.089  Sum_probs=141.3

Q ss_pred             HHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           45 QTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        45 ~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      ..+...++.++|.+..++|+.-.    .....+.+.+|.|+-..|    |.-+.-.+.|++|.+...    +   ..+|.
T Consensus      1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y----G~eesl~kVFeRAcqycd----~---~~V~~ 1534 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY----GTEESLKKVFERACQYCD----A---YTVHL 1534 (1710)
T ss_pred             HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh----CcHHHHHHHHHHHHHhcc----h---HHHHH
Confidence            34556899999999999999874    222334455666665553    555666677777776643    1   34678


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                      .|..+|...+++++|.++|+..++...  +...+|...|..++.+.+-+.|...+.+|++..+.  ........-.|.+-
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK--QEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHH
Confidence            899999999999999999998886654  45578889999999999999999999999988665  23455666778888


Q ss_pred             HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ++.|+ .+.+...|+-.+..      .|-..+.+.-..+.-.++|+.+-+...|+++..+.
T Consensus      1611 Fk~GD-aeRGRtlfEgll~a------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1611 FKYGD-AERGRTLFEGLLSA------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hhcCC-chhhHHHHHHHHhh------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            88898 88888888777654      23334444445555566666666666666666544

>KOG2047|consensus

Probab=98.02  E-value=0.0035  Score=60.99  Aligned_cols=204  Identities=13%  Similarity=0.127  Sum_probs=135.6

Q ss_pred             hhHHHhhccchhhhhhhHHHH--hh---hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--------hc
Q psy875            3 FKIALSRGIGLSDSLDSACTE--LH---TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--------AR   69 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~--~~---~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~   69 (480)
                      +++|..+|.. |...++...+  ++   .......-++++.+|..-|..-.+..+++.|+++.+.|..+-        .+
T Consensus       387 ~~Lw~~fakl-Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~  465 (835)
T KOG2047|consen  387 GTLWVEFAKL-YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN  465 (835)
T ss_pred             hhHHHHHHHH-HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence            3567777777 6666663333  21   222344556889999999999999999999999999997651        11


Q ss_pred             cCchHHH------HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q psy875           70 NFPEAVK------TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVL  143 (480)
Q Consensus        70 ~~~~~~~------~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l  143 (480)
                      ..+-...      .|...+.. ....|-++.....|++.+++---.      ..+..|.|..+....-|++|.+.|++.+
T Consensus       466 ~~pvQ~rlhrSlkiWs~y~Dl-eEs~gtfestk~vYdriidLriaT------Pqii~NyAmfLEeh~yfeesFk~YErgI  538 (835)
T KOG2047|consen  466 SEPVQARLHRSLKIWSMYADL-EESLGTFESTKAVYDRIIDLRIAT------PQIIINYAMFLEEHKYFEESFKAYERGI  538 (835)
T ss_pred             CCcHHHHHHHhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence            2222222      33333444 444566777777777777653211      2344677888888888999999999998


Q ss_pred             cccccccHHHHHHHHHH---HHHhhccHHHHHHHHHHHHhhhhcCcHHHH-HHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875          144 SSDLCKDLASCYISLAQ---TYKDNKQYNLAVDYFNKELRLHARNFPEAV-KTLGEIGDLYELQEKPFELVVSTHEKAL  218 (480)
Q Consensus       144 ~~~~~~~~~~~~~~la~---~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~al  218 (480)
                      ...+-|....+++..-.   .-+.-...+.|...|++|++.++   +..+ .+|...|..-.+-|. -..|+..|++|-
T Consensus       539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp---p~~aKtiyLlYA~lEEe~GL-ar~amsiyerat  613 (835)
T KOG2047|consen  539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP---PEHAKTIYLLYAKLEEEHGL-ARHAMSIYERAT  613 (835)
T ss_pred             ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence            88877776655554322   22333578899999999998654   3333 345556777777777 778888888765

>PRK11906 transcriptional regulator; Provisional

Probab=98.02  E-value=0.00035  Score=65.94  Aligned_cols=164  Identities=10%  Similarity=-0.035  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhc---cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHhhh
Q psy875           39 CYISLAQTYKD---NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--------EKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        39 ~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~--------~~~~~~A~~~~~kAl~~~~  107 (480)
                      .++..|.....   ....+.|+.+|.+|+.. ..-.|..+.+|..++.+|...        ..+-.+|....++|+++..
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~  335 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT  335 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence            44666666644   34667899999999933 223777888888888885443        1234566777777777644


Q ss_pred             cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP  187 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~  187 (480)
                      .      -+.++..+|.+....++++.|...|++++...  |+.+.+++..|.+..-.|+.++|++++++++++.   |.
T Consensus       336 ~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs---P~  404 (458)
T PRK11906        336 V------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE---PR  404 (458)
T ss_pred             C------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---ch
Confidence            3      26788899999999999999999999999666  6677889999999999999999999999999983   22


Q ss_pred             HHHHHHHHHHH-HHHHhCCchHHHHHHHHH
Q psy875          188 EAVKTLGEIGD-LYELQEKPFELVVSTHEK  216 (480)
Q Consensus       188 ~~~~~~~~l~~-~~~~~~~~~~~A~~~~~~  216 (480)
                      ........+.. .|+. .. .+.|+..|-+
T Consensus       405 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~  432 (458)
T PRK11906        405 RRKAVVIKECVDMYVP-NP-LKNNIKLYYK  432 (458)
T ss_pred             hhHHHHHHHHHHHHcC-Cc-hhhhHHHHhh
Confidence            22222222222 4443 33 5777776644

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=0.00012  Score=66.85  Aligned_cols=157  Identities=12%  Similarity=0.069  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      .....|.++...|++++|++.+.+.-         ...+....-.+| ...++++.|.+.++++.++    .++..+  +
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~~---------~lE~~al~Vqi~-L~~~R~dlA~k~l~~~~~~----~eD~~l--~  167 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKGG---------SLELLALAVQIL-LKMNRPDLAEKELKNMQQI----DEDSIL--T  167 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTTT---------CHHHHHHHHHHH-HHTT-HHHHHHHHHHHHCC----SCCHHH--H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHccC---------cccHHHHHHHHH-HHcCCHHHHHHHHHHHHhc----CCcHHH--H
Confidence            45667888889999999998876531         122333445674 4459999998888776543    333222  2


Q ss_pred             HHHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       119 ~~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      ....+++....|  ++.+|...|++.....  +....+++.+|.++..+|+|++|.+.++++++.    .+..+.++.|+
T Consensus       168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~----~~~~~d~LaNl  241 (290)
T PF04733_consen  168 QLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK----DPNDPDTLANL  241 (290)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----ccCCHHHHHHH
Confidence            223333444444  7999999999865443  234577889999999999999999999999865    34456788999


Q ss_pred             HHHHHHhCCchHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKA  217 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~a  217 (480)
                      ..+...+|++.+.+.+++.+.
T Consensus       242 iv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  242 IVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHhCCChhHHHHHHHHH
Confidence            999999999335555566553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.99  E-value=0.004  Score=63.74  Aligned_cols=214  Identities=13%  Similarity=0.088  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCCh
Q psy875           53 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL  132 (480)
Q Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~  132 (480)
                      ...|+++++-+++-..-.+...+.++..+|.+++....+++.|+.++.|++.+.++.+-......+...++.+|.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            44556666655532122344577889999999998889999999999999999887433344455666789999999888


Q ss_pred             HHHHHHHHHHhccccc---ccHHHHHHHH-HHHHHhhccHHHHHHHHHHHHhhhh--cCcHHHHHHHHHHHHHHHHhCCc
Q psy875          133 DSACSELHTVLSSDLC---KDLASCYISL-AQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDLYELQEKP  206 (480)
Q Consensus       133 ~~A~~~~~~~l~~~~~---~~~~~~~~~l-a~~y~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~~~~  206 (480)
                      . |+..+++.+.....   ..+..++.-+ ...+...+++..|++.++.......  +++.....+....+.++...+. 
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~-  194 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS-  194 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC-
Confidence            8 99999988865544   2223333333 3333334899999999999888865  3555555666666778888888 


Q ss_pred             hHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHhhccCC
Q psy875          207 FELVVSTHEKALDLARQN----KDDKLIRTVMRSMKKL--YKKHDKFTELEQIKTELKSLEEKLDLNS  268 (480)
Q Consensus       207 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~l~~~~~~~~  268 (480)
                      .+++++.++++...++..    ........++..+-++  +...|+++.+...+++....-+......
T Consensus       195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~  262 (608)
T PF10345_consen  195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSP  262 (608)
T ss_pred             chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCc
Confidence            899999999998777654    1133444555554444  5677888899999888888777766544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.99  E-value=7.3e-05  Score=65.34  Aligned_cols=100  Identities=8%  Similarity=0.006  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM  234 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  234 (480)
                      .++.|.-++..|+|.+|..-|..-++-+++ ....+.+++.||.+++.+|+ |++|...|..+.+   ..+..+...+++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k---~~P~s~KApdal  218 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGD-YEDAAYIFARVVK---DYPKSPKAPDAL  218 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhccc-chHHHHHHHHHHH---hCCCCCCChHHH
Confidence            788899999999999999999999888766 35567899999999999999 9999999988755   556666677899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          235 RSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       235 ~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ..||.+...+|+.++|...++++.+
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999998765

>KOG0511|consensus

Probab=97.97  E-value=1.5e-05  Score=71.46  Aligned_cols=58  Identities=36%  Similarity=0.437  Sum_probs=54.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       419 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      ..-|..||+.|..+.|++|++.|.++|  ..|....+||.+|+-.||.+++++|+++||-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN--~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN--AVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc--hhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            446889999999999999999999999  6799999999999999999999999999984

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.97  E-value=0.0055  Score=53.95  Aligned_cols=198  Identities=22%  Similarity=0.229  Sum_probs=145.9

Q ss_pred             cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q psy875           50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH  129 (480)
Q Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~  129 (480)
                      .+.+..+...+..+... .... .........+.. +...+.+..+...+..++..    .........+..++..+...
T Consensus        36 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  108 (291)
T COG0457          36 LGELAEALELLEEALEL-LPNS-DLAGLLLLLALA-LLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEAL  108 (291)
T ss_pred             HhhHHHHHHHHHHHHhc-Cccc-cchHHHHHHHHH-HHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHH
Confidence            56777777777777666 1111 124455666777 44558899999999888864    12344567788999999999


Q ss_pred             CChHHHHHHHHHHhcccccccHHHHHHHHHH-HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875          130 DNLDSACSELHTVLSSDLCKDLASCYISLAQ-TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      +++.+|+..+.+++...+......  ...+. ++...|++++|..++.+++..... .......+...+..+...++ ++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~  184 (291)
T COG0457         109 GKYEEALELLEKALALDPDPDLAE--ALLALGALYELGDYEEALELYEKALELDPE-LNELAEALLALGALLEALGR-YE  184 (291)
T ss_pred             hhHHHHHHHHHHHHcCCCCcchHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ccchHHHHHHhhhHHHHhcC-HH
Confidence            999999999999987665553333  33334 899999999999999999664211 12455666667777888899 99


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       209 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      .|+..+.+++......     ....+..++..+...+++.+|...+..+......
T Consensus       185 ~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         185 EALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            9999999998874322     5677888999999999999999999888775544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.95  E-value=3e-05  Score=72.78  Aligned_cols=70  Identities=16%  Similarity=0.051  Sum_probs=61.5

Q ss_pred             ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      |.....++++|.+|..+|+|++|+..|++++++.+++ .....+|+++|.+|..+|+ +++|+.++++|+++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr-~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-DEAQAAYYNKACCHAYREE-GKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence            6678999999999999999999999999999994332 2223569999999999999 99999999999986

>KOG4648|consensus

Probab=97.91  E-value=0.00012  Score=65.41  Aligned_cols=97  Identities=16%  Similarity=0.068  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      ....|.-|+++|+|++|+.||.+++...+.  ....+.|.|..|+++++|..|..-+..|+.+    ......+|...|.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d~~Y~KAYSRR~~  173 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIAL----DKLYVKAYSRRMQ  173 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHh----hHHHHHHHHHHHH
Confidence            457899999999999999999999977753  3367889999999999999999999999998    6778899999999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      +-+.+|+ ..+|.+-++.++++..
T Consensus       174 AR~~Lg~-~~EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  174 ARESLGN-NMEAKKDCETVLALEP  196 (536)
T ss_pred             HHHHHhh-HHHHHHhHHHHHhhCc
Confidence            9999999 9999999999998743

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.91  E-value=3.5e-05  Score=53.57  Aligned_cols=53  Identities=25%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          127 KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       127 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      ...|+|++|+..|++++...|.  ...+...+|.+|...|++++|...+++.+..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456666666666666654433  2345556666666666666666666665555

...

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.90  E-value=0.0005  Score=57.75  Aligned_cols=123  Identities=13%  Similarity=0.028  Sum_probs=95.2

Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875           22 TELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEK  101 (480)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~k  101 (480)
                      .++.-.+.......+..++..+|..|.+.|+++.|++.|.++.+. ..........+..+-.+ ....+++..+..+..+
T Consensus        21 ~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv-~i~~~d~~~v~~~i~k   98 (177)
T PF10602_consen   21 AELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRV-AIFFGDWSHVEKYIEK   98 (177)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHH
Confidence            335555566667788899999999999999999999999999887 44445556666666666 3334999999999999


Q ss_pred             HHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875          102 ALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD  146 (480)
Q Consensus       102 Al~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~  146 (480)
                      |-.+....++..........-|..+...++|.+|...|-.+....
T Consensus        99 a~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   99 AESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            999888877665555555566777777889999999888776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.001  Score=59.09  Aligned_cols=119  Identities=16%  Similarity=0.070  Sum_probs=75.5

Q ss_pred             CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccc
Q psy875           71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDL  147 (480)
Q Consensus        71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~  147 (480)
                      +|+.+..|..+|.+ +...|++..|...|.+|+++..+.      ..++..+|.++..+.   .-.++...+++++..++
T Consensus       152 nP~d~egW~~Lg~~-ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         152 NPGDAEGWDLLGRA-YMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             CCCCchhHHHHHHH-HHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            55556667777888 444478888888888887775543      233445555544432   45677777777775553


Q ss_pred             cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       148 ~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                        .-..+.+.||..+++.|+|.+|...++..++....+.+....+-..++.
T Consensus       225 --~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         225 --ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             --ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence              3346667777778888888888888777777766555544444444433

>KOG4648|consensus

Probab=97.89  E-value=4e-05  Score=68.33  Aligned_cols=95  Identities=19%  Similarity=0.196  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR  235 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  235 (480)
                      -.-|+.|+++|.|++|+.+|.+++..    .+..+..+.+.|.+|+++++ |..|..-+..|+.+      ......+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaL------d~~Y~KAYS  169 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIAL------DKLYVKAYS  169 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHh------hHHHHHHHH
Confidence            45699999999999999999999998    44445678899999999999 99999999999988      556777888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          236 SMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       236 ~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ..+..-..+|+..+|.+-++.+++|.
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            88888888888888888777776654

>KOG2384|consensus

Probab=97.88  E-value=7.4e-05  Score=60.65  Aligned_cols=67  Identities=25%  Similarity=0.340  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875          408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       408 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  476 (480)
                      +.++|.+|..||||++.|+..|..+.+.+|+.+| +.+-  +.|..|.+++.+|-+.|+.+++..|.+.-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg--v~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG--VTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccc--ccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            4689999999999999999999999999999999 7887  67999999999999999999999997753

>KOG1070|consensus

Probab=97.87  E-value=0.0083  Score=63.55  Aligned_cols=208  Identities=14%  Similarity=0.119  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      .++.+|.++-..|   |.-+.-.+.|++|.++     -+....|..+..+| ...+.+++|.++++..++-+.+      
T Consensus      1498 NiWiA~lNlEn~y---G~eesl~kVFeRAcqy-----cd~~~V~~~L~~iy-~k~ek~~~A~ell~~m~KKF~q------ 1562 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAY---GTEESLKKVFERACQY-----CDAYTVHLKLLGIY-EKSEKNDEADELLRLMLKKFGQ------ 1562 (1710)
T ss_pred             HHHHHHHhHHHhh---CcHHHHHHHHHHHHHh-----cchHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHhcc------
Confidence            4566677777666   4556667788888887     23345677788884 4459999999999999887652      


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...+|...|...+.+.+-+.|...+.+|+.--|..+........|.+-++.|+.+.+...|+..+..    .|.....|.
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a----yPKRtDlW~ 1638 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA----YPKRTDLWS 1638 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh----CccchhHHH
Confidence            2567888999999999999999999999988888777777888899999999999999999988877    556667888


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT-VMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      -+.+.-.+.|. .+.+...|++++.+.    -.+..+. .+...-.+-...|+-...+..-.+|.+.-.++..
T Consensus      1639 VYid~eik~~~-~~~vR~lfeRvi~l~----l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s 1706 (1710)
T KOG1070|consen 1639 VYIDMEIKHGD-IKYVRDLFERVIELK----LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKS 1706 (1710)
T ss_pred             HHHHHHHccCC-HHHHHHHHHHHHhcC----CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhh
Confidence            88888889999 899999999998762    2333333 3444444445568877777777777777666543

>KOG1464|consensus

Probab=97.83  E-value=0.0016  Score=56.43  Aligned_cols=207  Identities=13%  Similarity=0.079  Sum_probs=134.9

Q ss_pred             cccHHHHHHHHHHHHHHhhccCchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875           50 NKQYNLAVDYFNKELRLHARNFPEA-VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK  128 (480)
Q Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~  128 (480)
                      ..+.++|+..|++++++ .+..... ..++-.+-.+++.. ++|++....|++.+...+..-.....-.+.+.+-..-..
T Consensus        40 e~~p~~Al~sF~kVlel-EgEKgeWGFKALKQmiKI~f~l-~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt  117 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLEL-EGEKGEWGFKALKQMIKINFRL-GNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST  117 (440)
T ss_pred             ccCHHHHHHHHHHHHhc-ccccchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence            45899999999999999 5444333 45667777885555 999999999999886554332221111222222222223


Q ss_pred             cCChHHHHHHHH---HHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC--------cHHHHHHHHHH
Q psy875          129 HDNLDSACSELH---TVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN--------FPEAVKTLGEI  196 (480)
Q Consensus       129 ~~~~~~A~~~~~---~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~l  196 (480)
                      ..+.+--.++|+   .++....+ .-+...-..||.+|++.++|.+-.+.+++.-..++.+        ......+|..-
T Consensus       118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE  197 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE  197 (440)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence            344444455555   33332222 2224455679999999999998887777655554431        12344556556


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      -.+|..+++ ..+-...|++++.+-...+.+.....+..-=|..+.+.|++++|-.-+-++..
T Consensus       198 IQmYT~qKn-NKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK  259 (440)
T KOG1464|consen  198 IQMYTEQKN-NKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK  259 (440)
T ss_pred             hhhhhhhcc-cHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence            678888888 77777889999998777777776666666667888889999888765555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.83  E-value=7.8e-05  Score=52.62  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          159 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       159 a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ..+|...++|++|++++++++.+    .|..+..+...|.++..+|+ +++|...++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL----DPDDPELWLQRARCLFQLGR-YEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence            34555555555555555555555    33344555555555555555 55555555555543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.81  E-value=5.5e-05  Score=52.54  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=45.9

Q ss_pred             HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          163 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       163 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ...|+|++|+.+|++++..    .|....++..+|.+|...|+ +++|...+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence            5789999999999999998    45557788899999999999 99999999988755

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.80  E-value=0.00055  Score=54.07  Aligned_cols=67  Identities=12%  Similarity=0.175  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhcc---------------HHHHHHHHHHHHhh
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQ---------------YNLAVDYFNKELRL  181 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~---------------~~~A~~~~~~al~~  181 (480)
                      +...|+.+|...++|++|+..+++.+...|. +.+..+++..|.+++.+..               ..+|...|++.++.
T Consensus        49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444433 2233444444444444433               55666677666666


Q ss_pred             hhc
Q psy875          182 HAR  184 (480)
Q Consensus       182 ~~~  184 (480)
                      .++
T Consensus       129 yP~  131 (142)
T PF13512_consen  129 YPN  131 (142)
T ss_pred             CcC
Confidence            544

>KOG1915|consensus

Probab=97.78  E-value=0.012  Score=55.38  Aligned_cols=210  Identities=11%  Similarity=0.085  Sum_probs=153.4

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccC---ch--HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PE--AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~--~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      +++..-.+-...|+.+.-.+.|++|+.-..+-.   ..  ....|.+.+..=-....+.+.+.+.|+.++++.+-  ...
T Consensus       324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH--kkF  401 (677)
T KOG1915|consen  324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH--KKF  401 (677)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc--ccc
Confidence            344444444456899999999999987631101   11  12233333333234558899999999999997653  245


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                      ..+.++...|..-..+.+...|.+.+-.++-..|.+.+...|..+   -.++++++.....|++-++.    .|..+.+|
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel---ElqL~efDRcRkLYEkfle~----~Pe~c~~W  474 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL---ELQLREFDRCRKLYEKFLEF----SPENCYAW  474 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH---HHHHhhHHHHHHHHHHHHhc----ChHhhHHH
Confidence            667788888899999999999999999999888877665555443   45678999999999999988    78889999


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      ...|.+-..+|+ .+.|...|+-|+.... ...+..   .+....++-...|.+++|...|++++....
T Consensus       475 ~kyaElE~~Lgd-tdRaRaifelAi~qp~-ldmpel---lwkaYIdFEi~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  475 SKYAELETSLGD-TDRARAIFELAISQPA-LDMPEL---LWKAYIDFEIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             HHHHHHHHHhhh-HHHHHHHHHHHhcCcc-cccHHH---HHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence            999999999999 9999999998876421 112222   233344566788999999999999887543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.78  E-value=0.00012  Score=51.65  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      |..+|...++|++|++++++++...|.  ....+...|.+|..+|++++|+..++++++..++
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            357899999999999999999977654  4577888999999999999999999999988543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00062  Score=60.44  Aligned_cols=101  Identities=15%  Similarity=0.071  Sum_probs=81.0

Q ss_pred             ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHcCC
Q psy875          149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--KPFELVVSTHEKALDLARQNKD  226 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~  226 (480)
                      |+-+.-+..||.+|..+|++..|...|.+|+++..    ..+..+..+|.+++.+.  +...++...+++++..      
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------  222 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG----DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL------  222 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------
Confidence            45557788899999999999999999999999943    44566777787776654  3357888899998877      


Q ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          227 DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       227 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ++....+...|+..+..+|+|.+|....+....
T Consensus       223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            666778888999999999999999999887755

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.75  E-value=0.0034  Score=61.76  Aligned_cols=168  Identities=11%  Similarity=-0.041  Sum_probs=120.2

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDD--KLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYK  163 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~--~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~  163 (480)
                      ||-+.++..+.++.+ ......+  ......|+.....+..    ....+.|.+.+.......|+  -+..+...|+++.
T Consensus       202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~--s~lfl~~~gR~~~  278 (468)
T PF10300_consen  202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN--SALFLFFEGRLER  278 (468)
T ss_pred             CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHH
Confidence            888999998888765 2211111  1111223333322332    34667788888887766654  3456778899999


Q ss_pred             hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875          164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  243 (480)
                      ..|+.++|++.|++++.....-+.....++..+|.++.-+.+ |++|..++.+..+.     +........+..|-++..
T Consensus       279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLM  352 (468)
T ss_pred             HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHh
Confidence            999999999999999865444455567788999999999999 99999999887654     344566666788999999


Q ss_pred             cCCh-------HHHHHHHHHHHHHHHhhcc
Q psy875          244 HDKF-------TELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       244 ~g~~-------~~A~~~~~~~~~l~~~~~~  266 (480)
                      .|+.       ++|..+++++-.+...+..
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g  382 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPKLKQKKAG  382 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence            9999       7777777777776665544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.74  E-value=0.019  Score=58.85  Aligned_cols=221  Identities=12%  Similarity=0.033  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-----
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP------EAVKTLGEIGDLYELQEKSFEIVQSTHEKALD-----  104 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~-----  104 (480)
                      ...+.+.++......+++.+|........+.. ...+      -....++..|..+... |+.+.|+.+|.+..-     
T Consensus       360 ~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~yL~gl~~q~~-g~l~~A~~~y~~~~~~~~~~  437 (608)
T PF10345_consen  360 QCYLLFYQIWCNFIRGDWSKATQELEFMRQLC-QRSPSKLYESLYPLLHYLLGLYYQST-GDLEAALYQYQKPRFLLCEA  437 (608)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-hcCccchhhhhhHHHHHHHHHHHHHc-CCHHHHHHHHhhhHHhhhhh
Confidence            34567778888889999999999999888873 2111      2345566667775555 999999999985551     


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHhcCChHH----HHHHHHHHh---cccccccHHHHHHHH--HHHHHhhccHHHHHHHH
Q psy875          105 LARQNKDDKLIRTVMRSIKKLYKKHDNLDS----ACSELHTVL---SSDLCKDLASCYISL--AQTYKDNKQYNLAVDYF  175 (480)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~----A~~~~~~~l---~~~~~~~~~~~~~~l--a~~y~~~~~~~~A~~~~  175 (480)
                      ..+..........+..|+..++...+.-..    +-..+...-   ...+.......+..+  +.-....-.+.++..++
T Consensus       438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l  517 (608)
T PF10345_consen  438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL  517 (608)
T ss_pred             hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence            222233334445566788888887765333    444444222   222222222222222  22222334556899999


Q ss_pred             HHHHhhh-hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHHHHHcCChHH
Q psy875          176 NKELRLH-AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT---VMRSMKKLYKKHDKFTE  249 (480)
Q Consensus       176 ~~al~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~  249 (480)
                      .++++.. ..  +....+.++..++..++ .|. ..+.......+...+++..+......   +-..+.+.+...|+.++
T Consensus       518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~-~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k  595 (608)
T PF10345_consen  518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGD-VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK  595 (608)
T ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence            9999887 33  45556667788888888 788 88888888889999888844443333   55678888999999999


Q ss_pred             HHHHHHHHHHH
Q psy875          250 LEQIKTELKSL  260 (480)
Q Consensus       250 A~~~~~~~~~l  260 (480)
                      |.....++..+
T Consensus       596 a~~~~~~~~~~  606 (608)
T PF10345_consen  596 AEEARQQLDRV  606 (608)
T ss_pred             HHHHHHHHHHh
Confidence            99998887654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK11906 transcriptional regulator; Provisional

Probab=97.72  E-value=0.0018  Score=61.25  Aligned_cols=150  Identities=10%  Similarity=-0.025  Sum_probs=108.1

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHhcccccccHHHHHHHHHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH---------DNLDSACSELHTVLSSDLCKDLASCYISLAQ  160 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~  160 (480)
                      ...+.|+..|.+|+....   -++..+.+|..++.++...         ..-.+|...-+++++..+.  -+.++..+|.
T Consensus       272 ~~~~~Al~lf~ra~~~~~---ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~--Da~a~~~~g~  346 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSD---IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV--DGKILAIMGL  346 (458)
T ss_pred             HHHHHHHHHHHHHhhccc---CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence            556788888988883322   1344566777777776654         1345677777788877644  4578889999


Q ss_pred             HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875          161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL  240 (480)
Q Consensus       161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  240 (480)
                      +....++++.|...|++|+.+    .|..+.+++..|.+..-.|+ .++|.+.+++|+++..    ......+.....+.
T Consensus       347 ~~~~~~~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP----~~~~~~~~~~~~~~  417 (458)
T PRK11906        347 ITGLSGQAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEP----RRRKAVVIKECVDM  417 (458)
T ss_pred             HHHhhcchhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCc----hhhHHHHHHHHHHH
Confidence            999999999999999999999    67788999999999999999 9999999999998721    11222233333334


Q ss_pred             HHHcCChHHHHHHH
Q psy875          241 YKKHDKFTELEQIK  254 (480)
Q Consensus       241 ~~~~g~~~~A~~~~  254 (480)
                      |.. ...++|..+|
T Consensus       418 ~~~-~~~~~~~~~~  430 (458)
T PRK11906        418 YVP-NPLKNNIKLY  430 (458)
T ss_pred             HcC-CchhhhHHHH
Confidence            444 4455666555

>KOG4642|consensus

Probab=97.72  E-value=0.00044  Score=58.78  Aligned_cols=126  Identities=15%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +..-|.-+..-.+|..|+.+|.+++.+.|  ..+..|.+-+.+|+++++++.+..-..+++++    .+..+..++.+|.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP--~~~~Y~tnralchlk~~~~~~v~~dcrralql----~~N~vk~h~flg~   86 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINP--TVASYYTNRALCHLKLKHWEPVEEDCRRALQL----DPNLVKAHYFLGQ   86 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc----ChHHHHHHHHHHH
Confidence            34556677777899999999999997764  45577889999999999999999999999999    7888999999999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ  252 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  252 (480)
                      ....... |++|+..+.+|..+.+...... ...+-..|..+-.+.=+..++.+
T Consensus        87 ~~l~s~~-~~eaI~~Lqra~sl~r~~~~~~-~~di~~~L~~ak~~~w~v~e~~R  138 (284)
T KOG4642|consen   87 WLLQSKG-YDEAIKVLQRAYSLLREQPFTF-GDDIPKALRDAKKKRWEVSEEKR  138 (284)
T ss_pred             HHHhhcc-ccHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhCccchhHHHH
Confidence            9999999 9999999999999888765442 22333344444444334444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.71  E-value=0.0016  Score=54.77  Aligned_cols=124  Identities=14%  Similarity=0.092  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875           96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDY  174 (480)
Q Consensus        96 ~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~  174 (480)
                      ++-++.-++-++.......+..++..+|..|.+.|++++|++.|.++...... ......+.++-.+....+++.....+
T Consensus        16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~   95 (177)
T PF10602_consen   16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY   95 (177)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            44455555555666667788899999999999999999999999998866544 34477888999999999999999999


Q ss_pred             HHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          175 FNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       175 ~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +.++-.+...  +..........-|..+...++ |.+|...|-.+..-
T Consensus        96 i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~-f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   96 IEKAESLIEKGGDWERRNRLKVYEGLANLAQRD-FKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHhch-HHHHHHHHHccCcC
Confidence            9999888665  222333444556667777888 99999999887644

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0520|consensus

Probab=97.71  E-value=2.7e-05  Score=79.27  Aligned_cols=95  Identities=25%  Similarity=0.300  Sum_probs=78.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~  459 (480)
                      ...|.+.+|+++..+...++..+++- |-.....|..|...+|+ |..++.++.-+++. .|..++  ++|..|+||||+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~--i~D~~G~tpL~w  647 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAID--IRDRNGWTPLHW  647 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccc--cccCCCCcccch
Confidence            34589999999999999999999986 65566677778888888 55566666555553 577777  679999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCC
Q psy875          460 AANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       460 A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      |+..|+..++..|++.|++.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADP  667 (975)
T ss_pred             HhhcCHHHHHHHHHHhcccc
Confidence            99999999999999988864

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.71  E-value=0.0099  Score=48.80  Aligned_cols=133  Identities=10%  Similarity=0.052  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHH
Q psy875           78 LGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYIS  157 (480)
Q Consensus        78 ~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  157 (480)
                      ...+|.. ...+|++.+|..+|++++.-.- .++    ...+..++......+++..|...+++..+..+..........
T Consensus        92 r~rLa~a-l~elGr~~EA~~hy~qalsG~f-A~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          92 RYRLANA-LAELGRYHEAVPHYQQALSGIF-AHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             HHHHHHH-HHHhhhhhhhHHHHHHHhcccc-CCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            3567888 7777999999999999985321 112    334567889999999999999999988877766555566778


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          158 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       158 la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      +|.+|..+|++.+|...|+.++...++     +..-...+..+.++|+ ..+|...+....+-..
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg-----~~ar~~Y~e~La~qgr-~~ea~aq~~~v~d~~~  224 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPG-----PQARIYYAEMLAKQGR-LREANAQYVAVVDTAK  224 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHH
Confidence            999999999999999999999988554     2234446788889998 8888887776665443

>KOG1464|consensus

Probab=97.71  E-value=0.0027  Score=55.17  Aligned_cols=188  Identities=15%  Similarity=0.168  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      ..++-.+-.++++.++|++-++.|.+.+.+.    ..+....  +.+.+-.. -....+.+--..+|+..+...+...+.
T Consensus        65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy-iStS~~m~LLQ~FYeTTL~ALkdAKNe  141 (440)
T KOG1464|consen   65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY-ISTSKNMDLLQEFYETTLDALKDAKNE  141 (440)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence            4567778889999999999999999998875    2222211  12222111 122244555556777777666666666


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHH---hccccc-------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTV---LSSDLC-------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~---l~~~~~-------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      +.+...-..+|.+|+..+.|.+-.+.+++.   .+....       ..+..+|..--..|..+++-.+-...|++++.+.
T Consensus       142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK  221 (440)
T KOG1464|consen  142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK  221 (440)
T ss_pred             eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence            666666678999999999888877776643   322211       3445667666788999999888888999999885


Q ss_pred             hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          183 AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       183 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                      ..  .+.....+.-.=|..+.+.|+ +++|-.-|-+|.+-..+.+++.
T Consensus       222 SAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKNYDEsGspR  268 (440)
T KOG1464|consen  222 SAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKNYDESGSPR  268 (440)
T ss_pred             ccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhcccccCCcc
Confidence            44  333444555566888999999 9999988888877666655544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.69  E-value=0.0016  Score=51.45  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...++.-|.-.+..|+|++|++.|+......|.... ..+...||.+|++.++|++|+..+++-+++.+. ++....+++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y   88 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHH
Confidence            345678889999999999999999988877766444 578899999999999999999999999999665 456778888


Q ss_pred             HHHHHHHHhC
Q psy875          195 EIGDLYELQE  204 (480)
Q Consensus       195 ~l~~~~~~~~  204 (480)
                      ..|.+++.+.
T Consensus        89 ~~gL~~~~~~   98 (142)
T PF13512_consen   89 MRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHh
Confidence            8888887764

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.63  E-value=0.0062  Score=45.80  Aligned_cols=117  Identities=10%  Similarity=0.054  Sum_probs=85.2

Q ss_pred             cHHHHHHHHHHHH--HhhccHHHHHHHHHHHHhhhhcCc--------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          150 DLASCYISLAQTY--KDNKQYNLAVDYFNKELRLHARNF--------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       150 ~~~~~~~~la~~y--~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      .++.+|..|+..-  +.-|-|++|..-+.+++++...-+        -.-+.++..|+.++..+|+ |++++....+++.
T Consensus         5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~   83 (144)
T PF12968_consen    5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALR   83 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHH
Confidence            4456677665444  455889999999999998865522        2346778889999999999 9999999999999


Q ss_pred             HHHHcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccC
Q psy875          220 LARQNKD-----DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLN  267 (480)
Q Consensus       220 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~  267 (480)
                      .+.+.+.     -...+.+....+..+...|+.++|+..++.+-+.-..-..+
T Consensus        84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            8876542     23456667788999999999999999999998876655443

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.63  E-value=0.00097  Score=49.58  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=67.0

Q ss_pred             HHhhccHHHHHHHHHHHHhhhhcC--cH---HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy875          162 YKDNKQYNLAVDYFNKELRLHARN--FP---EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRS  236 (480)
Q Consensus       162 y~~~~~~~~A~~~~~~al~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  236 (480)
                      ....|+|.+|++.+.+..+.....  ..   ....+..++|.++...|+ +++|+..+++|++++++.++......++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~Are~~D~~~l~~al~~   86 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLARENGDRRCLAYALSW   86 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            356789999999999988875552  22   456778899999999999 999999999999999999999999888888


Q ss_pred             HHHHHH
Q psy875          237 MKKLYK  242 (480)
Q Consensus       237 l~~~~~  242 (480)
                      +..+..
T Consensus        87 ~~~l~~   92 (94)
T PF12862_consen   87 LANLLK   92 (94)
T ss_pred             HHHHhh
Confidence            776654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.59  E-value=0.005  Score=46.27  Aligned_cols=109  Identities=13%  Similarity=0.086  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHhhhcCCCc------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-
Q psy875           74 AVKTLGEIGDLY-ELQEKSFEIVQSTHEKALDLARQNKDD------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS-  145 (480)
Q Consensus        74 ~~~~~~~lg~~y-~~~~~~~~~A~~~~~kAl~~~~~~~~~------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~-  145 (480)
                      .+.+|..++..- ..+.|.|++|-..+++|+++.+..+..      ---+.++..|+..+..+|+|++++..-.++|.. 
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            344555553330 334488999999999999998877643      223567778888888888888777655555421 


Q ss_pred             ------c--ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          146 ------D--LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       146 ------~--~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                            .  ....+..+-++.|..+..+|+.++|+..|+.+-++.
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi  130 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI  130 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                  1  113344555666777777777777777777776653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.57  E-value=0.003  Score=59.85  Aligned_cols=126  Identities=10%  Similarity=0.068  Sum_probs=97.9

Q ss_pred             HHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-------------
Q psy875           46 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-------------  112 (480)
Q Consensus        46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-------------  112 (480)
                      -.++..+.++-++.-.+|+++    .++-+.+|..+|.- ..  ....+|+.+|++|++..+..-..             
T Consensus       177 ~AWRERnp~aRIkaA~eALei----~pdCAdAYILLAEE-eA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEI----NPDCADAYILLAEE-EA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHh----hhhhhHHHhhcccc-cc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            345778999999999999999    77777887777653 12  34678888888888654322110             


Q ss_pred             ------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875          113 ------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE  178 (480)
Q Consensus       113 ------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a  178 (480)
                            .-...+-..+|.+..++|+.++|++.++..++..+..+...++.+|..++..++.|.++...+.+-
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                  112345568999999999999999999999877776666789999999999999999999888774

The molecular function of this protein is uncertain.

>KOG0521|consensus

Probab=97.54  E-value=8.8e-05  Score=76.02  Aligned_cols=90  Identities=31%  Similarity=0.295  Sum_probs=79.5

Q ss_pred             CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875          332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV  411 (480)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~  411 (480)
                      ....+.+++|.|+..|..-++++|++.|+++|..+.                .|.+|+|.+...|+...+..+++.|++.
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~----------------~g~~plh~~~~~g~~~~~~~ll~~~a~~  715 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDS----------------KGRTPLHHATASGHTSIACLLLKRGADP  715 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHhcCCcchhhhc----------------cCCCcchhhhhhcccchhhhhccccccc
Confidence            345567999999999999999999999999998765                3999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHH
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQAL  437 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~L  437 (480)
                      +..+..|.+|+++|....+.+.+-++
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cccCccCcchhhHHhhhccccHHHHH
Confidence            99999999999999877766655443

>KOG0551|consensus

Probab=97.52  E-value=0.0039  Score=55.86  Aligned_cols=109  Identities=18%  Similarity=0.139  Sum_probs=93.3

Q ss_pred             cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc-ccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD-LCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN  185 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~-~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~  185 (480)
                      .-+++..++.-|..-|+-|++.++|..|..+|.+.+... .++.+ +..|.|.|.+....|+|..|+.-..+++.+    
T Consensus        73 ~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   73 EEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             ccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            344566678888999999999999999999999988654 33444 788999999999999999999999999998    


Q ss_pred             cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      .|....++..=|.+++.+.+ +++|..++++.+.+.
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~-~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELER-FAEAVNWCEEGLQID  183 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHH-HHHHHHHHhhhhhhh
Confidence            67778899999999999999 999999999887653

>KOG1839|consensus

Probab=97.51  E-value=0.0027  Score=66.92  Aligned_cols=184  Identities=15%  Similarity=0.139  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc--CC
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ--NK  110 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~--~~  110 (480)
                      +.-....|......|.+.+|.+ .-+++.++    ....+..+.+|..++.+|+.. +++++|+.+-.+|.-+...  ..
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~-~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL-GDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh-cchHHHHHhcccceeeechhccC
Confidence            3344556667777888888888 67777664    334677889999999995554 9999999999999866544  33


Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      +.+.....|.+++......++...|+..+.+++...      ..|..+.+..+++.++...++++.|+.+.+.|+.....
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            667888899999999999999999999888665432      23677888899999999999999999999999987544


Q ss_pred             ----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          185 ----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       185 ----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                          .....+.++..++..+...+. +..|....+....+.+.
T Consensus      1090 v~g~~~l~~~~~~~~~a~l~~s~~d-fr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKD-FRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred             hcCccchhhhhHHHHHHHHHhhhHH-HHHHHHHHhhHHHHHHH
Confidence                345667888899999999999 99999999998887765

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.50  E-value=0.027  Score=57.32  Aligned_cols=221  Identities=10%  Similarity=0.002  Sum_probs=140.6

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHh-hcc-C---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLH-ARN-F---PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~-~---~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ...-++......++.+|-.+..++.... ... .   ...+...-.-|.+ ....|++++|+.+.+.++........ ..
T Consensus       418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~v-al~~~~~e~a~~lar~al~~L~~~~~-~~  495 (894)
T COG2909         418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQV-ALNRGDPEEAEDLARLALVQLPEAAY-RS  495 (894)
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhcccccc-hh
Confidence            3445667777899999999999887774 111 1   1122222233666 44559999999999999977654433 33


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhhccH--HHHHHHHHHHHhhhhcCcHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD----LASCYISLAQTYKDNKQY--NLAVDYFNKELRLHARNFPE  188 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~~la~~y~~~~~~--~~A~~~~~~al~~~~~~~~~  188 (480)
                      -..++..+|.+..-.|++++|..+.+.+.+.....+    ...+....+.+...+|+-  .+.+.-+...-...-...+.
T Consensus       496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~  575 (894)
T COG2909         496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR  575 (894)
T ss_pred             hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence            356788999999999999999999998876644322    245556668899999933  33333333222111111122


Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      ........+.++...-+ ++.+..-..+.+++.......+ ...-++..|+.++...|++++|.....+...+..+
T Consensus       576 ~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~  650 (894)
T COG2909         576 HEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN  650 (894)
T ss_pred             chhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            11222223333333334 6777777777777655444333 33344469999999999999999999988776544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.50  E-value=0.021  Score=56.20  Aligned_cols=164  Identities=13%  Similarity=0.049  Sum_probs=116.2

Q ss_pred             hccccHHHHHHHHHHHHHHhhccCchHH----HHHHHHHHHHHH----hhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           48 KDNKQYNLAVDYFNKELRLHARNFPEAV----KTLGEIGDLYEL----QEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~lg~~y~~----~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      --.|+-+.+++.+.++.+. .+-....+    ..|+.+ ...+.    ...+.+.|.+.+......+++.      ...+
T Consensus       199 GF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~-~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lfl  270 (468)
T PF10300_consen  199 GFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLV-VPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALFL  270 (468)
T ss_pred             CcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHH-HHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHHH
Confidence            3468999999999988764 22121121    122222 11111    1345677777777777665532      4557


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhccccc-ccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLC-KDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      ...|.++...|+.++|++.|++++..... +++ ..++..+|.++.-+.+|++|.+++.+..+.   +....+...+..|
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cccHHHHHHHHHH
Confidence            78999999999999999999988853332 222 567899999999999999999999988775   3455667777889


Q ss_pred             HHHHHhCCch-------HHHHHHHHHHHHHHHH
Q psy875          198 DLYELQEKPF-------ELVVSTHEKALDLARQ  223 (480)
Q Consensus       198 ~~~~~~~~~~-------~~A~~~~~~al~~~~~  223 (480)
                      .++...++ .       ++|.+++.++-.+..+
T Consensus       348 ~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l~~k  379 (468)
T PF10300_consen  348 ACLLMLGR-EEEAKEHKKEAEELFRKVPKLKQK  379 (468)
T ss_pred             HHHHhhcc-chhhhhhHHHHHHHHHHHHHHHhh
Confidence            99999999 8       7788888877766554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1915|consensus

Probab=97.48  E-value=0.051  Score=51.33  Aligned_cols=129  Identities=8%  Similarity=-0.014  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      ..++...|.+-..+|+.+.|...|.-++......--...+-..-..-...|.+++|...|++.++..+........+.+.
T Consensus       471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe  550 (677)
T KOG1915|consen  471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFE  550 (677)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHh
Confidence            44555566666666666666666665553322111011111112222344666666666666666533322222222222


Q ss_pred             HHHHHHHhC-----------CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875          196 IGDLYELQE-----------KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD  245 (480)
Q Consensus       196 l~~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  245 (480)
                      .+......+           . ...|...|++|....+..+........+...-.+-...|
T Consensus       551 ~s~~~~~~~~~~~~~e~~~~~-~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G  610 (677)
T KOG1915|consen  551 ASASEGQEDEDLAELEITDEN-IKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFG  610 (677)
T ss_pred             ccccccccccchhhhhcchhH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence            222222333           3 456666666666666655554444444433333333344

>KOG2471|consensus

Probab=97.44  E-value=0.00066  Score=63.64  Aligned_cols=124  Identities=8%  Similarity=-0.033  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-ch--HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc-----
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-DK--LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD-----  146 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~~--~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~-----  146 (480)
                      ......-++.+|.. |+|.+|.+.+...-......+. .+  .....++|||-+++.+|.|.-+..+|.+++...     
T Consensus       240 ~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  240 SMALLLKSQLEYAH-GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             cHHHHHHHHHHHHh-cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            34445568887777 9999998777554322111111 11  234456899999999999999999999998411     


Q ss_pred             ----cc-------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875          147 ----LC-------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ  203 (480)
Q Consensus       147 ----~~-------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~  203 (480)
                          +.       .....+.+|.|..|...|++-.|.++|.+++..+..+    +..|..+|.++...
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n----PrlWLRlAEcCima  382 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN----PRLWLRLAECCIMA  382 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHH
Confidence                11       1225678999999999999999999999999986555    46788888887654

>KOG3081|consensus

Probab=97.42  E-value=0.026  Score=49.28  Aligned_cols=144  Identities=18%  Similarity=0.114  Sum_probs=97.0

Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HHHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LASCYISL  158 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~l  158 (480)
                      |.+ +...+++++|++...+...+           .+...--.++.++.+++-|....++..++..+..   ++.+|..+
T Consensus       115 a~i-~~~~~~~deAl~~~~~~~~l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~l  182 (299)
T KOG3081|consen  115 AII-YMHDGDFDEALKALHLGENL-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKL  182 (299)
T ss_pred             hHH-hhcCCChHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            555 66669999998777653222           1222334677888889999999998887776522   34444444


Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875          159 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK  238 (480)
Q Consensus       159 a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  238 (480)
                      +.   .-+++.+|..+|++--+-    .+..+..+...+.++..+++ |++|...++.|+.-      .....+++.++.
T Consensus       183 a~---ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~k------d~~dpetL~Nli  248 (299)
T KOG3081|consen  183 AT---GGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDK------DAKDPETLANLI  248 (299)
T ss_pred             hc---cchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhc------cCCCHHHHHHHH
Confidence            32   235688888888775442    22335677888999999999 99999999998864      222356677777


Q ss_pred             HHHHHcCChHHHH
Q psy875          239 KLYKKHDKFTELE  251 (480)
Q Consensus       239 ~~~~~~g~~~~A~  251 (480)
                      .+-..+|...++.
T Consensus       249 v~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  249 VLALHLGKDAEVT  261 (299)
T ss_pred             HHHHHhCCChHHH
Confidence            7778888876654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.40  E-value=0.0093  Score=48.95  Aligned_cols=151  Identities=13%  Similarity=0.071  Sum_probs=109.0

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~  169 (480)
                      =+.+....-..+.+.+++..       .-...||.....+|++.+|...|++++...-..+ ...+..+++..+..+++.
T Consensus        70 ldP~R~~Rea~~~~~~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-~a~lLglA~Aqfa~~~~A  141 (251)
T COG4700          70 LDPERHLREATEELAIAPTV-------QNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-AAMLLGLAQAQFAIQEFA  141 (251)
T ss_pred             cChhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-HHHHHHHHHHHHhhccHH
Confidence            34555544445555544322       1234788999999999999999999986543332 356778999999999999


Q ss_pred             HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875          170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE  249 (480)
Q Consensus       170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  249 (480)
                      .|...+++..+....  ...+.....+|.++..+|+ +.+|...|+.++...     +.....+  ..+....++|+..+
T Consensus       142 ~a~~tLe~l~e~~pa--~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~y-----pg~~ar~--~Y~e~La~qgr~~e  211 (251)
T COG4700         142 AAQQTLEDLMEYNPA--FRSPDGHLLFARTLAAQGK-YADAESAFEVAISYY-----PGPQARI--YYAEMLAKQGRLRE  211 (251)
T ss_pred             HHHHHHHHHhhcCCc--cCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhC-----CCHHHHH--HHHHHHHHhcchhH
Confidence            999999998887432  1223456778999999999 999999999998763     2222333  44677889999988


Q ss_pred             HHHHHHHHH
Q psy875          250 LEQIKTELK  258 (480)
Q Consensus       250 A~~~~~~~~  258 (480)
                      |...+....
T Consensus       212 a~aq~~~v~  220 (251)
T COG4700         212 ANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHH
Confidence            877665543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.38  E-value=0.00041  Score=40.34  Aligned_cols=29  Identities=28%  Similarity=0.623  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      .+++++|.+|..+|++++|+.+|++++++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.37  E-value=0.0043  Score=53.76  Aligned_cols=101  Identities=16%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             HHhccccHHHHHHHHHHHHHHh---hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC-------CCchHH
Q psy875           46 TYKDNKQYNLAVDYFNKELRLH---ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN-------KDDKLI  115 (480)
Q Consensus        46 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~-------~~~~~~  115 (480)
                      -+.....+++|++.|.-|+-..   .......+..+..+|.+| ...++.+....++++|+..+.+.       ......
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWly-R~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~  164 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLY-RDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE  164 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence            3444668999999999988775   334446788899999995 44488777777777777554321       112333


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDL  147 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~  147 (480)
                      ..+.+.+|.++++.|++++|..+|.+.+....
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            45667788888888888888888887775443

>KOG3081|consensus

Probab=97.36  E-value=0.016  Score=50.47  Aligned_cols=153  Identities=13%  Similarity=0.127  Sum_probs=104.8

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      ...-|.+|...+++++|++...+...+       .+.+++  -.+ +..+..++-|.+..++..++..    +    .++
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~Al~--VqI-~lk~~r~d~A~~~lk~mq~ide----d----~tL  172 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLGENL-------EAAALN--VQI-LLKMHRFDLAEKELKKMQQIDE----D----ATL  172 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhccchH-------HHHHHH--HHH-HHHHHHHHHHHHHHHHHHccch----H----HHH
Confidence            445677888899999999998875444       222222  233 4444778888888877776643    1    123


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          120 RSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       120 ~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      ..||..+..    .+++..|..+|++.-...  +......+..+.+...+++|++|...++.++.-.    +..+.++.|
T Consensus       173 tQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----~~dpetL~N  246 (299)
T KOG3081|consen  173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD----AKDPETLAN  246 (299)
T ss_pred             HHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc----CCCHHHHHH
Confidence            344444443    347999999999765433  2334677889999999999999999999999873    334677888


Q ss_pred             HHHHHHHhCCchHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKA  217 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~a  217 (480)
                      +-.+-...|+ ..++..-+..-
T Consensus       247 liv~a~~~Gk-d~~~~~r~l~Q  267 (299)
T KOG3081|consen  247 LIVLALHLGK-DAEVTERNLSQ  267 (299)
T ss_pred             HHHHHHHhCC-ChHHHHHHHHH
Confidence            8888888999 56655544333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.35  E-value=0.0048  Score=53.51  Aligned_cols=95  Identities=14%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             ccHHHHHHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHhcCChHH-------HHHHHHHHhccccc----ccHHHHHHH
Q psy875           90 KSFEIVQSTHEKALDLARQNK-DDKLIRTVMRSIKKLYKKHDNLDS-------ACSELHTVLSSDLC----KDLASCYIS  157 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~-~~~~~~~~~~~l~~~y~~~~~~~~-------A~~~~~~~l~~~~~----~~~~~~~~~  157 (480)
                      ..+++|+..|.-|+-.+...+ ++...+.++..+|++|..+|+-+.       |++.|.+++.....    .+...+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            678999999999996665443 455778999999999999998554       44444455433322    123567778


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          158 LAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       158 la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      +|.++.+.|++++|..+|.+.+.....
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            899999999999999999988876443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.039  Score=45.89  Aligned_cols=99  Identities=20%  Similarity=0.146  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      .+-..++..+...+++++|+..++.++....+..+ ..+-.+||.+...+|++++|+..+....     ++...+.....
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-----~~~w~~~~~el  164 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-----EESWAAIVAEL  164 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-----cccHHHHHHHH
Confidence            34557888899999999999999988866555444 5677889999999999999988775432     23344555667


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      .|+++...|+ -++|...|++|+...
T Consensus       165 rGDill~kg~-k~~Ar~ay~kAl~~~  189 (207)
T COG2976         165 RGDILLAKGD-KQEARAAYEKALESD  189 (207)
T ss_pred             hhhHHHHcCc-hHHHHHHHHHHHHcc
Confidence            8999999999 999999999998763

>KOG0551|consensus

Probab=97.34  E-value=0.0024  Score=57.13  Aligned_cols=105  Identities=14%  Similarity=0.108  Sum_probs=93.0

Q ss_pred             ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                      ...+.-|-.-|+-|++-++|..|+..|.+++.....++...+..|.|.|.+.+..|+ |..|+.-+.+|+.+      .+
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~------~P  150 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKL------KP  150 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhc------Cc
Confidence            345677778899999999999999999999998777888889999999999999999 99999999999887      67


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          229 LIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ....++..-+.++..+..+.+|..+.++...+
T Consensus       151 ~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  151 THLKAYIRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            77888888899999999999999998876443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.32  E-value=0.0004  Score=40.98  Aligned_cols=27  Identities=26%  Similarity=0.653  Sum_probs=15.2

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      +.+||.+|..+|+|++|+++|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666666666666666666665544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.29  E-value=0.00047  Score=40.10  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC  148 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~  148 (480)
                      +.++.++|.+|..+|++++|+.+|+++++..|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            357899999999999999999999999987753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2796|consensus

Probab=97.28  E-value=0.044  Score=47.72  Aligned_cols=134  Identities=9%  Similarity=0.091  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHH
Q psy875           77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLA  152 (480)
Q Consensus        77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~  152 (480)
                      ..+.+..+ ..-.|.|.-....+.+.++...  +..   ......+|.+..+.|+.+-|..|++..-+....    ....
T Consensus       179 Vmy~~~~~-llG~kEy~iS~d~~~~vi~~~~--e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~  252 (366)
T KOG2796|consen  179 VMYSMANC-LLGMKEYVLSVDAYHSVIKYYP--EQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI  252 (366)
T ss_pred             HHHHHHHH-HhcchhhhhhHHHHHHHHHhCC--ccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence            44455566 4445889999999999887332  222   334568899999999999999999954432221    3335


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      .+..+.+.+|.-.++|.+|...+.+.+..    .+..+.+-++.|.+....|+ ..+|++.++.++...
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQD  316 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhccC
Confidence            67888999999999999999999998887    34445667788889999999 999999998887653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.27  E-value=0.0049  Score=45.77  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=62.7

Q ss_pred             HhccccHHHHHHHHHHHHHHh-h-ccCc---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875           47 YKDNKQYNLAVDYFNKELRLH-A-RNFP---EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS  121 (480)
Q Consensus        47 ~~~~~~~~~A~~~~~~al~~~-~-~~~~---~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~  121 (480)
                      ..+.|+|..|++.+.+..... . ....   ....+..++|.+ +...|++++|+..+++|+.++++.+|...+..++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~-~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~   86 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAEL-HRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW   86 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            456799999999999998886 2 2222   345677888999 555599999999999999999999999888887777


Q ss_pred             HHHHH
Q psy875          122 IKKLY  126 (480)
Q Consensus       122 l~~~y  126 (480)
                      +..+.
T Consensus        87 ~~~l~   91 (94)
T PF12862_consen   87 LANLL   91 (94)
T ss_pred             HHHHh
Confidence            66554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.25  E-value=0.00073  Score=39.22  Aligned_cols=29  Identities=34%  Similarity=0.628  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      .++..+|.+|..+|+|++|+++|++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34556666666666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.24  E-value=0.0009  Score=39.47  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNK  225 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~  225 (480)
                      ++.+||.+|..+|+ |++|+++|++++.+.+...
T Consensus         1 al~~Lg~~~~~~g~-~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGD-YEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccc
Confidence            47899999999999 9999999999998766543

>KOG3616|consensus

Probab=97.18  E-value=0.037  Score=55.01  Aligned_cols=112  Identities=18%  Similarity=0.237  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHH------HHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH------
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNK------ELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD------  219 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~------al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~------  219 (480)
                      ..|-.-|.+|.+..++++|++||++      ++++..- .+......-...|.-+...|+ ++-|+.+|-+|-.      
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q-~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhhhHHHHHH
Confidence            3455567788888888888888876      4444332 344555556667777777788 8777776655432      


Q ss_pred             -------------HHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          220 -------------LARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       220 -------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                                   +.....+.......|-.+++-|...|+|+-|.+.+.++-..++.|+
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~  799 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAID  799 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHH
Confidence                         2222233333334455677778888888888888887766666553

>smart00248 ANK ankyrin repeats

Probab=97.17  E-value=0.00075  Score=37.14  Aligned_cols=27  Identities=41%  Similarity=0.767  Sum_probs=16.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          453 GWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       453 g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      |.||+|+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666666554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG1839|consensus

Probab=97.16  E-value=0.012  Score=62.38  Aligned_cols=183  Identities=15%  Similarity=0.109  Sum_probs=143.4

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhhhcC--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHH
Q psy875           81 IGDLYELQEKSFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLA  152 (480)
Q Consensus        81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~  152 (480)
                      .|.. ....+.+.+|.+ .-+++.+....  .-++..+..|..++.++..++++++|+.+-.++.-+.      ..++..
T Consensus       938 ~gq~-~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  938 QGQE-ALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhh-hhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            3444 333377777777 66666554422  1247778999999999999999999999988776333      225667


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhh----hhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC--
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRL----HARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD--  226 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--  226 (480)
                      ..|.+++...+..++...|...+.++..+    ...++|..+.+..+++.++...++ ++.|+.+.+.|+++.++..-  
T Consensus      1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE-ADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred             HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-HHHHHHHHHHHHHHHhhhcCcc
Confidence            88999999999999999999999998876    223678888888999999999999 99999999999997776543  


Q ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          227 DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       227 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      .......+..+++.+..++++..|....+....+....-.
T Consensus      1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg 1134 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLG 1134 (1236)
T ss_pred             chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhC
Confidence            3345667788999999999999999998888876655544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.05  Score=45.27  Aligned_cols=100  Identities=10%  Similarity=0.018  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR  231 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  231 (480)
                      ......+|..+.+.+++++|+..++.++....+ ......+-.+||.+...+|+ +++|+..+...       .+.....
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~-------~~~~w~~  159 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQKK-ADAALKTLDTI-------KEESWAA  159 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcc-------ccccHHH
Confidence            345667899999999999999999999876333 44556677899999999999 88887766443       3444555


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          232 TVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ......|+++..+|+-++|...|+++.+.
T Consensus       160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         160 IVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            66678899999999999999999998764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.10  E-value=0.0013  Score=38.16  Aligned_cols=29  Identities=34%  Similarity=0.628  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRL   66 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~   66 (480)
                      .+++.+|.+++..|++++|+++|++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46777777777777777777777777776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.09  E-value=0.0013  Score=38.09  Aligned_cols=30  Identities=33%  Similarity=0.690  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      .++..+|.+|..+|++++|+++|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            355666666666666666666666666653

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.07  E-value=0.023  Score=46.24  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhhcc
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL-EEKLDL  266 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l-~~~~~~  266 (480)
                      ..+...++..+...|+ +++|+..+++++..      .|....++..+..+|..+|+..+|.+.|+++... .+.++.
T Consensus        62 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~  132 (146)
T PF03704_consen   62 LDALERLAEALLEAGD-YEEALRLLQRALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI  132 (146)
T ss_dssp             HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence            4566778888899999 99999999999988      6777788899999999999999999999999764 445555

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1463|consensus

Probab=97.06  E-value=0.17  Score=45.79  Aligned_cols=220  Identities=12%  Similarity=0.063  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      +..-.....+|.++...|++.+--.......... .-..+..+.....+-......-+....-+......++.++..+..
T Consensus        45 ~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt  124 (411)
T KOG1463|consen   45 KEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT  124 (411)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH
Confidence            3445677899999999999988777776666653 111222233333332222222255666677777788777655433


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHh----cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--Cc
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVL----SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NF  186 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l----~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~  186 (480)
                      ......-..+..+|...++|.+|+......+    .......+..++..=..+|....+..+|..-+.-|-.....  -+
T Consensus       125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp  204 (411)
T KOG1463|consen  125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP  204 (411)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC
Confidence            3333445588899999999999999887443    23344555667777788899999999998888776555333  23


Q ss_pred             H-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy875          187 P-EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIK  254 (480)
Q Consensus       187 ~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  254 (480)
                      | ..+..-..=|-++...++ |.-|..||-+|.+-+...+++.....++..|-.+-...+..++--...
T Consensus       205 PqlQa~lDLqSGIlha~ekD-ykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll  272 (411)
T KOG1463|consen  205 PQLQATLDLQSGILHAAEKD-YKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL  272 (411)
T ss_pred             HHHHHHHHHhccceeecccc-cchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3 334444444666666656 999999999999988777777767777777777777777777654443

>KOG0545|consensus

Probab=97.03  E-value=0.016  Score=49.72  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccc--------cc--------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSD--------LC--------KDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~--------~~--------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      .++..-|+-++..|+|.+|...|+.++..-        |.        ......+.|.++++...|+|-+++++....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            456788999999999999999999776321        11        12245788999999999999999999999988


Q ss_pred             hhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .    .+....+|+.-|.++...=+ .++|..-|.+++++
T Consensus       259 ~----~~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  259 H----HPGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLEL  293 (329)
T ss_pred             c----CCchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhc
Confidence            7    66778899999999999989 99999999999987

>KOG4642|consensus

Probab=96.99  E-value=0.0033  Score=53.61  Aligned_cols=99  Identities=14%  Similarity=0.120  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM  234 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  234 (480)
                      +..-|+.|+.-++|..|+.+|-+++.+    .|..+..|.+-+.+|++.++ ++.+..-.++|+.+      .+......
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~----nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql------~~N~vk~h   81 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI----NPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQL------DPNLVKAH   81 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc----CCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhc------ChHHHHHH
Confidence            444577788889999999999999998    67777889999999999999 99999999999988      67778888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875          235 RSMKKLYKKHDKFTELEQIKTELKSLEEKL  264 (480)
Q Consensus       235 ~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~  264 (480)
                      ..++........|.+|...++++..+...-
T Consensus        82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998876553

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.18  Score=44.50  Aligned_cols=204  Identities=14%  Similarity=0.072  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ..+.-.+...++.+|...|++..--+......+.. .-..+........+-.-+-.....++.-+......++.+.+.+.
T Consensus        41 ~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr  120 (421)
T COG5159          41 LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR  120 (421)
T ss_pred             hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            34556678899999999999887666666555553 11223333333333222123336677778888888877665433


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHh----cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--C
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVL----SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--N  185 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l----~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~  185 (480)
                      .......-..+..++++.|+|.+|+....-.+    ....++.+...+..-..+|....+..++..-+..|-.....  .
T Consensus       121 ~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC  200 (421)
T COG5159         121 KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC  200 (421)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Confidence            33333344578889999999999999887433    33445666777887889999999998888877666555333  3


Q ss_pred             cHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy875          186 FPEA-VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSM  237 (480)
Q Consensus       186 ~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  237 (480)
                      ||.. +..-..-|..+....+ |.-|..||-+|++-+............+..+
T Consensus       201 Ppqlqa~lDL~sGIlhcdd~d-yktA~SYF~Ea~Egft~l~~d~kAc~sLkYm  252 (421)
T COG5159         201 PPQLQAQLDLLSGILHCDDRD-YKTASSYFIEALEGFTLLKMDVKACVSLKYM  252 (421)
T ss_pred             CHHHHHHHHHhccceeecccc-chhHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            3433 3333333445555556 9999999999998666555554433444433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.96  E-value=0.011  Score=48.42  Aligned_cols=48  Identities=19%  Similarity=0.252  Sum_probs=26.4

Q ss_pred             ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHh
Q psy875          131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ----YNLAVDYFNKELR  180 (480)
Q Consensus       131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~----~~~A~~~~~~al~  180 (480)
                      -+++|+.-|++++.+.|  ....++.++|.+|..++.    ..+|.++|++|.+
T Consensus        50 miedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~  101 (186)
T PF06552_consen   50 MIEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE  101 (186)
T ss_dssp             HHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence            34556666666766654  445677777777776643    2344444444433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.88  E-value=0.0021  Score=39.95  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      ++..+|.+|..+|++++|+..|+++++..    |....++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~----P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD----PDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCCHHHHHHhh
Confidence            45667777777777777777777777763    33344454444

>KOG2610|consensus

Probab=96.86  E-value=0.074  Score=48.03  Aligned_cols=165  Identities=12%  Similarity=-0.020  Sum_probs=115.1

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875           44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK  123 (480)
Q Consensus        44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~  123 (480)
                      +.+.+-+|++.+|-..+.+.++-    .|....++..--.+|+.. |+.......++|.+..-  ..+.+....+...++
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d----~PtDlla~kfsh~a~fy~-G~~~~~k~ai~kIip~w--n~dlp~~sYv~Gmya  182 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDD----YPTDLLAVKFSHDAHFYN-GNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYA  182 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHh----CchhhhhhhhhhhHHHhc-cchhhhhhHHHHhcccc--CCCCcHHHHHHHHHH
Confidence            44556677777777777776654    333333333333443444 66666666666655321  345566677777888


Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ  203 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~  203 (480)
                      ......|-|++|.+.-++++++.+..  ..+...++.++...+++.++.++..+.-..-........-.|-..|..+.+.
T Consensus       183 FgL~E~g~y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~  260 (491)
T KOG2610|consen  183 FGLEECGIYDDAEKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG  260 (491)
T ss_pred             hhHHHhccchhHHHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence            99999999999999999999887654  3567778999999999999999988765443332223334456678888888


Q ss_pred             CCchHHHHHHHHHHH
Q psy875          204 EKPFELVVSTHEKAL  218 (480)
Q Consensus       204 ~~~~~~A~~~~~~al  218 (480)
                      +. |+.|++.|..-+
T Consensus       261 ae-ye~aleIyD~ei  274 (491)
T KOG2610|consen  261 AE-YEKALEIYDREI  274 (491)
T ss_pred             cc-hhHHHHHHHHHH
Confidence            99 999999998754

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.16  Score=44.95  Aligned_cols=179  Identities=10%  Similarity=0.064  Sum_probs=126.3

Q ss_pred             HhhccHHHHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHHHhcCChHHHHHHHH---HHhcccccccHHHHHHHHHHH
Q psy875           87 LQEKSFEIVQSTHEKALDLARQNK--DDKLIRTVMRSIKKLYKKHDNLDSACSELH---TVLSSDLCKDLASCYISLAQT  161 (480)
Q Consensus        87 ~~~~~~~~A~~~~~kAl~~~~~~~--~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~---~~l~~~~~~~~~~~~~~la~~  161 (480)
                      ...+++++|+..|.+.+.-....+  .....-.+..+++.+|...|++..--+...   .+......+....+...|-.-
T Consensus        14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek   93 (421)
T COG5159          14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK   93 (421)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence            334789999999888875321111  123344567899999999998876555444   334444444444444443322


Q ss_pred             H-HhhccHHHHHHHHHHHHhhhhcCcH--HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875          162 Y-KDNKQYNLAVDYFNKELRLHARNFP--EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK  238 (480)
Q Consensus       162 y-~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  238 (480)
                      + .....++.-++.+...++.......  .....-..+..++++.|+ |.+|+....-.+...++..+.+....++..=+
T Consensus        94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~-YsdalalIn~ll~ElKk~DDK~~Li~vhllES  172 (421)
T COG5159          94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK-YSDALALINPLLHELKKYDDKINLITVHLLES  172 (421)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence            2 3446677777777777776544222  223344567888999999 99999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          239 KLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       239 ~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      ++|.+..+..++..-+..+..++.++.-
T Consensus       173 Kvyh~irnv~KskaSLTaArt~Ans~YC  200 (421)
T COG5159         173 KVYHEIRNVSKSKASLTAARTLANSAYC  200 (421)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhccCC
Confidence            9999999999999998888877766543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.84  E-value=0.0024  Score=37.04  Aligned_cols=29  Identities=34%  Similarity=0.700  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRL   66 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~   66 (480)
                      .+++.+|.+|...|++++|+++|++++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45666666666666666666666666665

...

>smart00248 ANK ankyrin repeats

Probab=96.83  E-value=0.0023  Score=35.05  Aligned_cols=28  Identities=46%  Similarity=0.741  Sum_probs=18.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          418 GWLPLHEAANHGHTDIVQALVSAGADPN  445 (480)
Q Consensus       418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  445 (480)
                      |.||+|+++..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5667777777777777777777665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.80  E-value=0.016  Score=47.62  Aligned_cols=86  Identities=15%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH
Q psy875          132 LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ----------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE  201 (480)
Q Consensus       132 ~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~  201 (480)
                      |+.|.+.++......|  .-+..+++.|.++.++.+          +++|+.-|++|+.+    .|....++.++|.+|.
T Consensus         7 FE~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----NPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHH
Confidence            5566666665554443  334555555555555533          45566666667777    6777889999999998


Q ss_pred             HhCC---chHHHHHHHHHHHHHHHH
Q psy875          202 LQEK---PFELVVSTHEKALDLARQ  223 (480)
Q Consensus       202 ~~~~---~~~~A~~~~~~al~~~~~  223 (480)
                      .++.   +..+|..+|++|...+++
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~Fqk  105 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQK  105 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHH
Confidence            8663   145777788887776653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3609|consensus

Probab=96.76  E-value=0.0037  Score=62.83  Aligned_cols=114  Identities=18%  Similarity=0.027  Sum_probs=84.0

Q ss_pred             hccCCccchhhhccCC----CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCc
Q psy875          311 NRKRAPRSHFLIKRND----KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGE  386 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  386 (480)
                      ..+|+-|..-.+....    .++|-.+.-+...++.|..+-+.+++++|++++...                       .
T Consensus        33 ~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----------------------g   89 (822)
T KOG3609|consen   33 HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----------------------G   89 (822)
T ss_pred             HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----------------------c
Confidence            4456655544333322    345556666778889999999999999999987554                       2


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCC---------C-CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCc
Q psy875          387 TALHVAAARGNLTLVQSLLKQGHPV---------K-VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDK  447 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~g~~~---------~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  447 (480)
                      .+|.+|+..|...+|+.++.+-.+.         + ..=..+.|||.+||..++.+|++.|+++|+.+-.+
T Consensus        90 dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            4578899999999999999763222         1 11235789999999999999999999999888743

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.76  E-value=0.091  Score=48.04  Aligned_cols=136  Identities=8%  Similarity=0.014  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      +|..+.....+.+..+.|...|.+|++-    .......|...|.+-+...++.+.|...|+.+++.+...      ...
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~   72 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDF   72 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHH
Confidence            4455556666667788888888888643    333344556667773443477777888888888776532      222


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccccccc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      +..........++.+.|...|++++...+... ...+|......-...|+.+...+..+++.+....
T Consensus        73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   73 WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            33444566778888888888888886654433 3456666666667778888888887777776544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.74  E-value=0.0037  Score=38.80  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD   83 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~   83 (480)
                      .+++.+|..|...|++++|++.|+++++.    .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~----~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL----DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCCHHHHHHhhh
Confidence            46788899999999999999999999988    5555555555553

>KOG2505|consensus

Probab=96.72  E-value=0.0022  Score=60.11  Aligned_cols=62  Identities=26%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             HHHHHHHHhcCCCCCCC------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          398 LTLVQSLLKQGHPVKVQ------DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       398 ~~~~~~ll~~g~~~~~~------~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                      ...++.|.+++.+.|..      +..-.|+||+|+..|..++|.+|++.|+|+.  +.|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~--~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS--TKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch--hcccCCCCcccccc
Confidence            56778888887766532      3345788888888888888888888888888  44888888888765

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.70  E-value=0.56  Score=44.52  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH-HHHHc---
Q psy875          149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD-LARQN---  224 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~-~~~~~---  224 (480)
                      ...+..+..++.+..+.|+++.|..++.++...........+.+....+.+....|+ ..+|+..++..+. .....   
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcccc
Confidence            456788899999999999999999999998876433222245667778999999999 9999999988877 22211   


Q ss_pred             ------------------------CCcHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHh
Q psy875          225 ------------------------KDDKLIRTVMRSMKKLYKKH------DKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       225 ------------------------~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~l~~~  263 (480)
                                              ........++..+|......      +..+++...|+++.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence                                    12345567777777777777      7778888888887776543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2471|consensus

Probab=96.69  E-value=0.011  Score=55.87  Aligned_cols=120  Identities=17%  Similarity=0.083  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHh-ccccc----ccH--HHHHHHHHHHHHhhccHHHHHHHHHHHHhh-hh----
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVL-SSDLC----KDL--ASCYISLAQTYKDNKQYNLAVDYFNKELRL-HA----  183 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l-~~~~~----~~~--~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~~----  183 (480)
                      .......+..++-.|+|.+|.+.+...- ...+.    ++.  ...++|||.++++++.|.-+..+|.+|++. ..    
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3455677889999999999999987432 11111    233  344689999999999999999999999962 11    


Q ss_pred             c---------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875          184 R---------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK  242 (480)
Q Consensus       184 ~---------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  242 (480)
                      +         .......++++.|..|...|+ +-.|.++|.++...+...+      +.+..|+++..
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~vfh~nP------rlWLRlAEcCi  380 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHVFHRNP------RLWLRLAECCI  380 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHHHhcCc------HHHHHHHHHHH
Confidence            1         122456789999999999999 9999999999998875432      34445565554

>KOG2505|consensus

Probab=96.65  E-value=0.004  Score=58.52  Aligned_cols=77  Identities=22%  Similarity=0.220  Sum_probs=58.0

Q ss_pred             HHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHc
Q psy875          349 QEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANH  428 (480)
Q Consensus       349 ~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~  428 (480)
                      ...|+.|.+++.+.|.....       ...   +.-.-|+||+|+..|...+|..||+.|+|+...|..|+||..++.  
T Consensus       404 p~~ie~lken~lsgnf~~~p-------e~~---~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~--  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTP-------EAN---DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA--  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccc-------ccc---ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc--
Confidence            46788888888887765321       000   111679999999999999999999999999999999999988876  


Q ss_pred             CCHHHHHHHH
Q psy875          429 GHTDIVQALV  438 (480)
Q Consensus       429 ~~~~~~~~Ll  438 (480)
                       ..+|-..++
T Consensus       472 -nkdVk~~F~  480 (591)
T KOG2505|consen  472 -NKDVKSIFI  480 (591)
T ss_pred             -cHHHHHHHH
Confidence             334444444

>KOG1550|consensus

Probab=96.64  E-value=0.17  Score=51.26  Aligned_cols=186  Identities=15%  Similarity=0.191  Sum_probs=121.2

Q ss_pred             cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875           52 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ----EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK  127 (480)
Q Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~----~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~  127 (480)
                      ....|..+++.+-+.      ....+...+|.+|+.-    ..+.+.|+.+++.|..-.++.. ......+...+|.+|.
T Consensus       227 ~~~~a~~~~~~~a~~------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~  299 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYL  299 (552)
T ss_pred             hhhHHHHHHHHHHhh------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHh
Confidence            356788888887766      3344556677774432    3689999999999987211110 0112335678899998


Q ss_pred             hcC-----ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875          128 KHD-----NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK---QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       128 ~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~  199 (480)
                      +..     +++.|+.+|.++-....    ..+.+.+|.+|..-.   ++..|.+||..|...      ....+.+.+|.+
T Consensus       300 ~g~~~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------G~~~A~~~la~~  369 (552)
T KOG1550|consen  300 QGLGVEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------GHILAIYRLALC  369 (552)
T ss_pred             cCCCCccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------CChHHHHHHHHH
Confidence            854     67889999998764432    356778888887655   678999999998764      335667778887


Q ss_pred             HHHh---CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHH
Q psy875          200 YELQ---EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-DKFTELEQIKTELKSLEE  262 (480)
Q Consensus       200 ~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~l~~  262 (480)
                      |..-   ..+...|..+++++.+.-     .   ..+...++.++.-- +.+..+.-.+....++.-
T Consensus       370 y~~G~gv~r~~~~A~~~~k~aA~~g-----~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  370 YELGLGVERNLELAFAYYKKAAEKG-----N---PSAAYLLGAFYEYGVGRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHhCCCcCCCHHHHHHHHHHHHHcc-----C---hhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence            7652   233789999999986551     1   11222333333222 777777777766655443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.64  E-value=0.28  Score=45.25  Aligned_cols=145  Identities=15%  Similarity=0.127  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhcCC
Q psy875           38 SCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQNK  110 (480)
Q Consensus        38 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~~~  110 (480)
                      .....++..|..    ..+..+|+.+|..+.+.      ......+.+|.+|..-   ..++.+|..+|.+|.+......
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a  147 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA  147 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence            467777777776    45688899999865543      3445667788885552   2489999999999987633211


Q ss_pred             CchHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHH
Q psy875          111 DDKLIRTVMRSIKKLYKKHD-------NLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKEL  179 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~-------~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al  179 (480)
                           ..+...+|.+|..-.       +..+|..+|.++-...    ...+...+|.+|..    ..++.+|..+|.++-
T Consensus       148 -----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa  218 (292)
T COG0790         148 -----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA  218 (292)
T ss_pred             -----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence                 344667788777642       3347888888765433    34677888888855    458999999999987


Q ss_pred             hhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875          180 RLHARNFPEAVKTLGEIGDLYELQE  204 (480)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~~~  204 (480)
                      +.    ..  ....+.++ +++..|
T Consensus       219 ~~----g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         219 EQ----GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HC----CC--HHHHHHHH-HHHhcC
Confidence            75    12  56677777 666555

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.61  E-value=0.19  Score=40.80  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HcCCc
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR-QNKDD  227 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~  227 (480)
                      ..+...++..+...|++++|+..+++++..    .|..-.++..+-.+|...|+ +.+|+..|++...... +.+..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHHhCcC
Confidence            356667888899999999999999999998    56666788889999999999 9999999999987655 34433

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.58  E-value=0.0049  Score=37.62  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      +.++.+||.+|..+|++++|+.++++++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            35566777777777777777777777776643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.56  E-value=0.065  Score=49.00  Aligned_cols=134  Identities=12%  Similarity=0.141  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh-hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD-NKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      +|..+.....+.+..+.|...|.+++...  .....+|...|.+-.. .++.+.|...|+.+++.+..+    ...|...
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~----~~~~~~Y   76 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD----PDFWLEY   76 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----HHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC----HHHHHHH
Confidence            45556666677777999999999998433  2334678888888666 567777999999999985543    4556666


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ...+...++ .+.|...|++++..   .........++.....+-.+.|+.+......+++.++-
T Consensus        77 ~~~l~~~~d-~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   77 LDFLIKLND-INNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHHHHTT--HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCc-HHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            778888898 99999999999764   12222245677788888899999999999888887764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.52  E-value=0.048  Score=37.94  Aligned_cols=75  Identities=13%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .+.-...-|.-.+...+.++|+..+.++++- ..+.++...++..+..+ +...|+|.+++.+..+-+.++....++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k-~~~~~~rf~~lG~l~qA-~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEK-ITDREDRFRVLGYLIQA-HMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            4555666777788999999999999999998 66677788888888899 566699999999998888888766543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.50  E-value=0.0021  Score=37.24  Aligned_cols=31  Identities=23%  Similarity=0.479  Sum_probs=15.3

Q ss_pred             HHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875          175 FNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV  210 (480)
Q Consensus       175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  210 (480)
                      |++++++    .|..+.+|+++|.+|...|+ +++|
T Consensus         2 y~kAie~----~P~n~~a~~nla~~~~~~g~-~~~A   32 (34)
T PF13431_consen    2 YKKAIEL----NPNNAEAYNNLANLYLNQGD-YEEA   32 (34)
T ss_pred             hHHHHHH----CCCCHHHHHHHHHHHHHCcC-HHhh
Confidence            3444444    33344455555555555555 5544

>KOG2053|consensus

Probab=96.46  E-value=0.37  Score=49.38  Aligned_cols=145  Identities=16%  Similarity=0.079  Sum_probs=88.9

Q ss_pred             ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875           49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK  128 (480)
Q Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~  128 (480)
                      ..+++.+|+.-..+.++-    .|....+...-|.+ ..++|..++|..+++ ++...+.. |    -..+..+-.+|..
T Consensus        21 d~~qfkkal~~~~kllkk----~Pn~~~a~vLkaLs-l~r~gk~~ea~~~Le-~~~~~~~~-D----~~tLq~l~~~y~d   89 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKK----HPNALYAKVLKALS-LFRLGKGDEALKLLE-ALYGLKGT-D----DLTLQFLQNVYRD   89 (932)
T ss_pred             hhHHHHHHHHHHHHHHHH----CCCcHHHHHHHHHH-HHHhcCchhHHHHHh-hhccCCCC-c----hHHHHHHHHHHHH
Confidence            458999999999998887    55555544455667 666699999985543 44332222 2    2345678889999


Q ss_pred             cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875          129 HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      ++++++|..+|+++....|..   .....+-.+|.+-+.|.+-.+.   ++++++..+......|..+..+...... .+
T Consensus        90 ~~~~d~~~~~Ye~~~~~~P~e---ell~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~yyfWsV~Slilqs~~~-~~  162 (932)
T KOG2053|consen   90 LGKLDEAVHLYERANQKYPSE---ELLYHLFMAYVREKSYKKQQKA---ALQLYKNFPKRAYYFWSVISLILQSIFS-EN  162 (932)
T ss_pred             HhhhhHHHHHHHHHHhhCCcH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCcccchHHHHHHHHHHhccC-Cc
Confidence            999999999999999888762   3334444555555555543222   3333333233333444445544444444 44


Q ss_pred             HHH
Q psy875          209 LVV  211 (480)
Q Consensus       209 ~A~  211 (480)
                      +..
T Consensus       163 ~~~  165 (932)
T KOG2053|consen  163 ELL  165 (932)
T ss_pred             ccc
Confidence            433

>KOG2041|consensus

Probab=96.43  E-value=0.16  Score=50.41  Aligned_cols=31  Identities=13%  Similarity=0.140  Sum_probs=20.9

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTV  142 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~  142 (480)
                      +.....++.++|..+..+-.+++|.+||.+.
T Consensus       792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455566677777777777777777777643

>KOG1463|consensus

Probab=96.40  E-value=0.5  Score=42.96  Aligned_cols=222  Identities=16%  Similarity=0.073  Sum_probs=140.4

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHh-h-ccCc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           42 SLAQTYKDNKQYNLAVDYFNKELRLH-A-RNFP----EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        42 ~lg~~~~~~~~~~~A~~~~~~al~~~-~-~~~~----~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ..+.-.....++++++..+...+.-. + ...+    ..-.+...+|.+ +.+.|+.++-.......-....... ....
T Consensus         9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~l-l~~~~~~~~lr~li~~~Rpf~~~v~-Kaka   86 (411)
T KOG1463|consen    9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDL-LAKEGDAEELRDLITSLRPFLSSVS-KAKA   86 (411)
T ss_pred             HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHH-HHhccchhHHHHHHHHHHHHHHHhh-hHHH
Confidence            34444555677889999988888743 1 1111    122456788999 5555888776555544443333222 2233


Q ss_pred             HHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccc--cH--HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHH
Q psy875          116 RTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCK--DL--ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPE  188 (480)
Q Consensus       116 ~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~--~~--~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~  188 (480)
                      +.+...+-..+... +.++.-+..+...++-....  ..  ...-..+..+|.+.++|.+|+......++-.++  +...
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l  166 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL  166 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            44444555555443 34555555555544322221  11  233456899999999999999999887766555  5556


Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      ....+..-..+|+...+ ..+|...+..|-..+...--+| .++..-..-|-++..-.+|.-|..|+-++.+-.++++.
T Consensus       167 Lvev~llESK~y~~l~N-l~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~  244 (411)
T KOG1463|consen  167 LVEVHLLESKAYHALRN-LPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD  244 (411)
T ss_pred             eeeehhhhhHHHHHHhc-chhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCC
Confidence            67777788899999999 9999998888776554433333 44444445566667779999999999998876555544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.39  E-value=0.0035  Score=36.30  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHH
Q psy875           59 YFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ   96 (480)
Q Consensus        59 ~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~   96 (480)
                      +|++|+++    .|....+|+++|.+|... |++++|+
T Consensus         1 ~y~kAie~----~P~n~~a~~nla~~~~~~-g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIEL----NPNNAEAYNNLANLYLNQ-GDYEEAI   33 (34)
T ss_pred             ChHHHHHH----CCCCHHHHHHHHHHHHHC-cCHHhhc
Confidence            47888888    788888999999995555 9999886

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.32  E-value=0.87  Score=41.97  Aligned_cols=189  Identities=13%  Similarity=0.080  Sum_probs=123.1

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE---KSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~---~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      ...+......+++..|+..+.++-..      ........++..|....   .+..+|..+|+++...        ....
T Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~a~~~------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--------g~~~  110 (292)
T COG0790          45 LLNGAGSAYPPDYAKALKSYEKAAEL------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--------GLAE  110 (292)
T ss_pred             ccccccccccccHHHHHHHHHHhhhc------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--------ccHH
Confidence            33344445678999999999988764      11145566777743322   4577888888855432        2245


Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHhhhhcCc
Q psy875          118 VMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-------QYNLAVDYFNKELRLHARNF  186 (480)
Q Consensus       118 ~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-------~~~~A~~~~~~al~~~~~~~  186 (480)
                      +..+||.+|..    ..++.+|..+|+++......+. ..+...+|..|..-.       +...|..+|.++-...    
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----  185 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----  185 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----
Confidence            66789999987    4599999999998875443221 344677887777642       3347888888876552    


Q ss_pred             HHHHHHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---------------ChH
Q psy875          187 PEAVKTLGEIGDLYELQ-E--KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD---------------KFT  248 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~-~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~  248 (480)
                        ...+...+|.+|..- |  +++.+|..+|.+|-+.    ++    ......++ ++...|               +..
T Consensus       186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~----g~----~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~  254 (292)
T COG0790         186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ----GD----GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKK  254 (292)
T ss_pred             --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHH-HHHhcCCCchhhhhcccccCCCHH
Confidence              456778888888663 2  3389999999998654    22    45556666 555555               555


Q ss_pred             HHHHHHHHHHH
Q psy875          249 ELEQIKTELKS  259 (480)
Q Consensus       249 ~A~~~~~~~~~  259 (480)
                      .|..++.....
T Consensus       255 ~a~~~~~~~~~  265 (292)
T COG0790         255 QALEWLQKACE  265 (292)
T ss_pred             HHHHHHHHHHH
Confidence            56666555433

>KOG2581|consensus

Probab=96.23  E-value=0.4  Score=44.65  Aligned_cols=173  Identities=18%  Similarity=0.152  Sum_probs=114.5

Q ss_pred             HHHHHH-HHHHHHHhhccHHHHHHHHHHHHH-hhhcCCC--chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----
Q psy875           75 VKTLGE-IGDLYELQEKSFEIVQSTHEKALD-LARQNKD--DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----  146 (480)
Q Consensus        75 ~~~~~~-lg~~y~~~~~~~~~A~~~~~kAl~-~~~~~~~--~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----  146 (480)
                      ..+|.. ++.++....+++++|...-...+. +......  +...+.+|+-+..+|...|+...-..++...+...    
T Consensus       124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh  203 (493)
T KOG2581|consen  124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH  203 (493)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence            344444 466656666889999888777663 2221111  12335678888888999998766666665444322    


Q ss_pred             ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC
Q psy875          147 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD  226 (480)
Q Consensus       147 ~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  226 (480)
                      .....+...+.|-..|...+.|++|.....++.---.......+..++.+|.+..-+++ |..|.+++-+|+..+.....
T Consensus       204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld-YssA~~~~~qa~rkapq~~a  282 (493)
T KOG2581|consen  204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD-YSSALEYFLQALRKAPQHAA  282 (493)
T ss_pred             cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc-hhHHHHHHHHHHHhCcchhh
Confidence            22345667777889999999999999888775422112344778889999999999999 99999999999887654333


Q ss_pred             cHHHHHHHHHHHHHHHHcCChH
Q psy875          227 DKLIRTVMRSMKKLYKKHDKFT  248 (480)
Q Consensus       227 ~~~~~~~~~~l~~~~~~~g~~~  248 (480)
                      --....+...+.-+-.-+|++.
T Consensus       283 lGf~q~v~k~~ivv~ll~geiP  304 (493)
T KOG2581|consen  283 LGFRQQVNKLMIVVELLLGEIP  304 (493)
T ss_pred             hhHHHHHHHHHHHHHHHcCCCc
Confidence            3333444445555555566655

>KOG0545|consensus

Probab=96.18  E-value=0.059  Score=46.43  Aligned_cols=108  Identities=9%  Similarity=-0.067  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--------Cc------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--------NF------PEAVKTLGEIGDLYELQEKPFELVVSTHEKA  217 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--------~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  217 (480)
                      ..++..-|+-++..|+|.+|...|..|+-...+        ++      ......+.|.+.++...|+ |-++++.....
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e-~yevleh~sei  256 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE-YYEVLEHCSEI  256 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH-HHHHHHHHHHH
Confidence            456777899999999999999999998865332        11      2234568899999999999 99999999888


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          218 LDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      +..      .+....+|+..|+.+..-=+..+|..-++.+.++..++..
T Consensus       257 L~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  257 LRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             Hhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            876      5667788999999999999999999999998887666543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.17  E-value=1.2  Score=42.03  Aligned_cols=175  Identities=13%  Similarity=0.072  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh---cCChHHHHHHHHHHhcccccccHHH
Q psy875           77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK---HDNLDSACSELHTVLSSDLCKDLAS  153 (480)
Q Consensus        77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~---~~~~~~A~~~~~~~l~~~~~~~~~~  153 (480)
                      ...++=.. |....+|+..++..+..-.+-. . +......+-...|.++.+   .|+.++|+..+..++.... .....
T Consensus       143 iv~~lllS-yRdiqdydamI~Lve~l~~~p~-~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-~~~~d  218 (374)
T PF13281_consen  143 IVINLLLS-YRDIQDYDAMIKLVETLEALPT-C-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-NPDPD  218 (374)
T ss_pred             HHHHHHHH-hhhhhhHHHHHHHHHHhhccCc-c-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC-CCChH
Confidence            33455555 4555888888777665443311 1 012223345567777777   8999999999998764433 23346


Q ss_pred             HHHHHHHHHHhh---------ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH---
Q psy875          154 CYISLAQTYKDN---------KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA---  221 (480)
Q Consensus       154 ~~~~la~~y~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~---  221 (480)
                      ++..+|.+|.++         ...++|+..|.++.++.+.     ...-.|++.++...|.+++...+.-+-...+.   
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-----~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll  293 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-----YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL  293 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-----ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence            777788887543         3577899999999888422     12234566667777763443333332222222   


Q ss_pred             -HH-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          222 -RQ-NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       222 -~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                       ++ ..........+..++.+..-.|++++|.+.++++..+
T Consensus       294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             11 1223334455667888899999999999999988764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.15  E-value=0.015  Score=35.36  Aligned_cols=38  Identities=13%  Similarity=0.293  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCC
Q psy875          231 RTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNS  268 (480)
Q Consensus       231 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~  268 (480)
                      ..++.+||.+|..+|++++|..+++++..+...+...+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~   39 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD   39 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence            45788999999999999999999999999998886643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.12  E-value=1.1  Score=41.04  Aligned_cols=224  Identities=15%  Similarity=0.179  Sum_probs=123.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh-h-----ccCc----hHHHHHHHHHHHHHHhhccHHHH
Q psy875           27 VLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKELRLH-A-----RNFP----EAVKTLGEIGDLYELQEKSFEIV   95 (480)
Q Consensus        27 ~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~-~-----~~~~----~~~~~~~~lg~~y~~~~~~~~~A   95 (480)
                      ....+....++..+++.|.-....+ +++.|..++++|.++. .     ...+    ....++..++.+| ...+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~-l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAY-LEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHH-HcCCChHHH
Confidence            4455667789999999999999999 9999999999999995 1     1111    2456778889994 554666544


Q ss_pred             HHHHHHHHHhh-hcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHhhccHHHHH
Q psy875           96 QSTHEKALDLA-RQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLASCYISLAQTYKDNKQYNLAV  172 (480)
Q Consensus        96 ~~~~~kAl~~~-~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~la~~y~~~~~~~~A~  172 (480)
                      .+ -.++++.. ...++++.+..  ..+ .+..+.++.+.+.+.+.+.+.....  .....+...+ .-... .....|.
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~--L~l-~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i-~~l~~-~~~~~a~  177 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFL--LKL-EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI-KQLAE-KSPELAA  177 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHH--HHH-HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH-HHHHh-hCcHHHH
Confidence            33 22222222 23333333221  122 2223378899999999988765432  2222111111 11122 3345677


Q ss_pred             HHHHHHHhhhhcCcHH-HHHHHHHHHHHHHHhC-CchHHH--HHHHHHHHHHHHHc----CCcH---HHHHHHHHHHHHH
Q psy875          173 DYFNKELRLHARNFPE-AVKTLGEIGDLYELQE-KPFELV--VSTHEKALDLARQN----KDDK---LIRTVMRSMKKLY  241 (480)
Q Consensus       173 ~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~~A--~~~~~~al~~~~~~----~~~~---~~~~~~~~l~~~~  241 (480)
                      ..+.+.+...-...+. ..... -+-.++...+ ++....  ++.....+....+.    -..+   .....+.+.|.-.
T Consensus       178 ~~ld~~l~~r~~~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~  256 (278)
T PF08631_consen  178 FCLDYLLLNRFKSSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKH  256 (278)
T ss_pred             HHHHHHHHHHhCCChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            7777766542222222 11111 1222222222 111222  33333333322221    1111   2234555788999


Q ss_pred             HHcCChHHHHHHHHHHH
Q psy875          242 KKHDKFTELEQIKTELK  258 (480)
Q Consensus       242 ~~~g~~~~A~~~~~~~~  258 (480)
                      .+.++|.+|..+|+-+.
T Consensus       257 ~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  257 YKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HhhcCHHHHHHHHHHHH
Confidence            99999999999998665

It is also involved in sporulation [].

>KOG4322|consensus

Probab=96.02  E-value=1.4  Score=41.63  Aligned_cols=187  Identities=9%  Similarity=-0.014  Sum_probs=132.3

Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc---
Q psy875           72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC---  148 (480)
Q Consensus        72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---  148 (480)
                      .......+.-+.++..+ +++..|-..+++.+-...+.........+...++.++.+-+.--.+..+.-.++.....   
T Consensus       270 ~~svE~l~R~A~il~A~-~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~l  348 (482)
T KOG4322|consen  270 QQSVENLCRFAHILHAD-EQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSL  348 (482)
T ss_pred             HhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhcc
Confidence            34455556678887777 88999999999998777777777788888889999998888766666665544422211   


Q ss_pred             -ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc--HHHH-----HHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          149 -KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF--PEAV-----KTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       149 -~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                       -..+..-..++....-+|-.+.|+..+..++.....+.  ...+     .+.+.++........+.+.+..++++|-.+
T Consensus       349 dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~  428 (482)
T KOG4322|consen  349 DYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSI  428 (482)
T ss_pred             chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHH
Confidence             22244556678888888999999999999987643210  0001     111222222222333388999999999999


Q ss_pred             HHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          221 ARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       221 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ..+.+-.....++++.++..|-..|+.++=..+.-...+
T Consensus       429 f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk  467 (482)
T KOG4322|consen  429 FYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRK  467 (482)
T ss_pred             HHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence            999999999999999999999999998775555444444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.98  E-value=0.99  Score=42.83  Aligned_cols=167  Identities=18%  Similarity=0.131  Sum_probs=107.8

Q ss_pred             cHHHHHHHHHHHHHHh--------hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc------------CC-
Q psy875           52 QYNLAVDYFNKELRLH--------ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ------------NK-  110 (480)
Q Consensus        52 ~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~------------~~-  110 (480)
                      .|.++...|..+....        ....|....++..++.++..+ |++..|-+..++|+-....            .. 
T Consensus         9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~-gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~   87 (360)
T PF04910_consen    9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQ-GDHAQANDLLERALFAFERAFHPSFSPFRSNLTS   87 (360)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            4455555555554431        234666777788888884444 8888888888888743321            00 


Q ss_pred             ----------CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          111 ----------DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       111 ----------~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                                +.+..-.+.........+.|-+..|+++.+-.+..++..+-.-+...+=....+.++|+--++.++....
T Consensus        88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen   88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence                      1133444566777788899999999999998888877744334455566666677888877777776544


Q ss_pred             hhhcC-cHHHHHHHHHHHHHHHHhCCch---------------HHHHHHHHHHHHH
Q psy875          181 LHARN-FPEAVKTLGEIGDLYELQEKPF---------------ELVVSTHEKALDL  220 (480)
Q Consensus       181 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~---------------~~A~~~~~~al~~  220 (480)
                      ....+ -...+..-+.++.+++..++ -               ++|...+.+|+..
T Consensus       168 ~~~~~~~~~lPn~a~S~aLA~~~l~~-~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  168 KCYRNWLSLLPNFAFSIALAYFRLEK-EESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             hhhhhhhhhCccHHHHHHHHHHHhcC-ccccccccccccccchhHHHHHHHHHHHH
Confidence            21111 11234566677888888888 6               7888888888765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1550|consensus

Probab=95.97  E-value=0.15  Score=51.60  Aligned_cols=148  Identities=16%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHhcc---cccccHHHHHHHHHHHHH
Q psy875           92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH-----DNLDSACSELHTVLSS---DLCKDLASCYISLAQTYK  163 (480)
Q Consensus        92 ~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~-----~~~~~A~~~~~~~l~~---~~~~~~~~~~~~la~~y~  163 (480)
                      ...|.++++.+-...        ...+...+|.+|..-     .+.++|+.+|+.+...   ........+.+.+|.+|.
T Consensus       228 ~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~  299 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYL  299 (552)
T ss_pred             hhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHh
Confidence            456777776665432        144556777777755     4899999999987651   111123346778999998


Q ss_pred             hh----c-cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy875          164 DN----K-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--KPFELVVSTHEKALDLARQNKDDKLIRTVMRS  236 (480)
Q Consensus       164 ~~----~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  236 (480)
                      +.    . +++.|+.+|.++-+.      ....+.+.+|.++....  +++..|.++|..|...        ....+...
T Consensus       300 ~g~~~~~~d~~~A~~~~~~aA~~------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------G~~~A~~~  365 (552)
T KOG1550|consen  300 QGLGVEKIDYEKALKLYTKAAEL------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------GHILAIYR  365 (552)
T ss_pred             cCCCCccccHHHHHHHHHHHHhc------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------CChHHHHH
Confidence            85    3 788999999998776      23456778888888876  5588999999998643        23455667


Q ss_pred             HHHHHHH----cCChHHHHHHHHHHHHHH
Q psy875          237 MKKLYKK----HDKFTELEQIKTELKSLE  261 (480)
Q Consensus       237 l~~~~~~----~g~~~~A~~~~~~~~~l~  261 (480)
                      ++.+|..    .-+...|..+++++.+..
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            7777764    357888999999887744

>KOG2610|consensus

Probab=95.92  E-value=1.2  Score=40.66  Aligned_cols=159  Identities=9%  Similarity=-0.081  Sum_probs=109.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-ccc-ccHHHHHHHHHHHHH
Q psy875           86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS-DLC-KDLASCYISLAQTYK  163 (480)
Q Consensus        86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~-~~~-~~~~~~~~~la~~y~  163 (480)
                      +.. |.+.+|-....|.++-++.      -..+..---..+..+|+.......+++.+.. .++ |-...+.-.++..+.
T Consensus       114 ~~~-g~~h~a~~~wdklL~d~Pt------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  114 WGR-GKHHEAAIEWDKLLDDYPT------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hcc-ccccHHHHHHHHHHHhCch------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            455 6777776666776654332      1223333446677888888888888887743 222 333555566788889


Q ss_pred             hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875          164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  243 (480)
                      +.|-|++|.+..++++++    .+.-+-+...++-++.-.++ ..++.++..+.-..-+  .........|..-+.++..
T Consensus       187 E~g~y~dAEk~A~ralqi----N~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr--~s~mlasHNyWH~Al~~iE  259 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQI----NRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWR--QSWMLASHNYWHTALFHIE  259 (491)
T ss_pred             HhccchhHHHHHHhhccC----CCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchh--hhhHHHhhhhHHHHHhhhc
Confidence            999999999999999999    33445566677888888899 8888888777654433  1122233455567888888


Q ss_pred             cCChHHHHHHHHHHH
Q psy875          244 HDKFTELEQIKTELK  258 (480)
Q Consensus       244 ~g~~~~A~~~~~~~~  258 (480)
                      -+.|+.|+..|..-+
T Consensus       260 ~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  260 GAEYEKALEIYDREI  274 (491)
T ss_pred             ccchhHHHHHHHHHH
Confidence            899999999987643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.88  E-value=1.5  Score=40.84  Aligned_cols=123  Identities=13%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                      .-+..+...|+..++-..++.+-+..+.|.++       .+|....--+.++.-++++-.+. .-.++........+..-
T Consensus       268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia-------~lY~~ar~gdta~dRlkRa~~L~-slk~nnaes~~~va~aA  339 (531)
T COG3898         268 VAARALFRDGNLRKGSKILETAWKAEPHPDIA-------LLYVRARSGDTALDRLKRAKKLE-SLKPNNAESSLAVAEAA  339 (531)
T ss_pred             HHHHHHHhccchhhhhhHHHHHHhcCCChHHH-------HHHHHhcCCCcHHHHHHHHHHHH-hcCccchHHHHHHHHHH
Confidence            34555666666666666666666555555533       33333333344555555544431 12344455666677777


Q ss_pred             HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q psy875          201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-DKFTELEQIKTELKS  259 (480)
Q Consensus       201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  259 (480)
                      +.-|+ |..|..-.+.+....       ....++..|+++-... |+-.++.++..++..
T Consensus       340 lda~e-~~~ARa~Aeaa~r~~-------pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         340 LDAGE-FSAARAKAEAAAREA-------PRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             Hhccc-hHHHHHHHHHHhhhC-------chhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            77777 777777666665542       2446677888888777 999998888877654

>KOG2581|consensus

Probab=95.86  E-value=1.6  Score=40.88  Aligned_cols=213  Identities=15%  Similarity=0.061  Sum_probs=137.6

Q ss_pred             HHhccccHHHHHHHHHHHHHHh-hcc--Cc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           46 TYKDNKQYNLAVDYFNKELRLH-ARN--FP--EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        46 ~~~~~~~~~~A~~~~~~al~~~-~~~--~~--~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      ..+.+.++.+|.++-...+.-. ..+  .-  -.+.+|+.+..+ +...++...-...+..-+..+.--.+....+...+
T Consensus       135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~-~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN  213 (493)
T KOG2581|consen  135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLS-YELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN  213 (493)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence            3345789999999888766543 111  11  235678888888 44448877776777777777776667778888888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHh--cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH--HHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVL--SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP--EAVKTLGEI  196 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l  196 (480)
                      .|-..|...+.|++|.+...+..  ....+..++...+.+|.+..-+.+|..|.+++-+|+...+....  ..-.+...+
T Consensus       214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~  293 (493)
T KOG2581|consen  214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLM  293 (493)
T ss_pred             HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHH
Confidence            89999999999999999988765  22233466888889999999999999999999999988654110  111122222


Q ss_pred             HHHHHHhCCchH-----------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFE-----------LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       197 ~~~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ..+-..+|. +.           +++..|-+- ..+-+.++-.....++.....-+...|-|.-+.+.....++..
T Consensus       294 ivv~ll~ge-iPers~F~Qp~~~ksL~~Yf~L-t~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTg  367 (493)
T KOG2581|consen  294 IVVELLLGE-IPERSVFRQPGMRKSLRPYFKL-TQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTG  367 (493)
T ss_pred             HHHHHHcCC-CcchhhhcCccHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHh
Confidence            223333444 43           333322111 1122334444455556666666777777777776666665543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.71  E-value=0.025  Score=32.23  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      +++.+|.+|...|++++|+.+|++.++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4566677777777777777777666654

>KOG0376|consensus

Probab=95.70  E-value=0.023  Score=53.78  Aligned_cols=97  Identities=18%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875           43 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSI  122 (480)
Q Consensus        43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l  122 (480)
                      -+.-...-+.|+.|+..|.+|+++    .+.-+..+.+.+.. +...++|..|+.-..+|++..      +....+|...
T Consensus        10 ean~~l~~~~fd~avdlysKaI~l----dpnca~~~anRa~a-~lK~e~~~~Al~Da~kaie~d------P~~~K~Y~rr   78 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIEL----DPNCAIYFANRALA-HLKVESFGGALHDALKAIELD------PTYIKAYVRR   78 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhc----CCcceeeechhhhh-heeechhhhHHHHHHhhhhcC------chhhheeeec
Confidence            344555667788888888888877    44444444455555 444477777777777777663      4446677777


Q ss_pred             HHHHHhcCChHHHHHHHHHHhccccccc
Q psy875          123 KKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus       123 ~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      |.....++++.+|+.-|++.....|+..
T Consensus        79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~  106 (476)
T KOG0376|consen   79 GTAVMALGEFKKALLDLEKVKKLAPNDP  106 (476)
T ss_pred             cHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence            7777777888888877777666665543

>KOG1308|consensus

Probab=95.67  E-value=0.0055  Score=55.23  Aligned_cols=92  Identities=17%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHH
Q psy875          122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE  201 (480)
Q Consensus       122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~  201 (480)
                      .+.-.+..|.+++|++.|..++...  +..+.+|...+.++.++++...|+.-+..++++    ++..+.-|-.-|.+..
T Consensus       120 ~A~eAln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei----n~Dsa~~ykfrg~A~r  193 (377)
T KOG1308|consen  120 QASEALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI----NPDSAKGYKFRGYAER  193 (377)
T ss_pred             HHHHHhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc----CcccccccchhhHHHH
Confidence            3445567788999999999988665  566788999999999999999999999999999    5555666777788888


Q ss_pred             HhCCchHHHHHHHHHHHHH
Q psy875          202 LQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       202 ~~~~~~~~A~~~~~~al~~  220 (480)
                      .+|+ +++|...+..+.++
T Consensus       194 llg~-~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  194 LLGN-WEEAAHDLALACKL  211 (377)
T ss_pred             Hhhc-hHHHHHHHHHHHhc
Confidence            8999 99999999998876

>KOG0686|consensus

Probab=95.61  E-value=0.21  Score=46.47  Aligned_cols=122  Identities=14%  Similarity=0.067  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875           96 QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDY  174 (480)
Q Consensus        96 ~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~  174 (480)
                      .+-++.-++-++.......+..++..+|.-|..-|+++.|+++|-++-..... ...+..+.++-.+-..+|+|-.-..|
T Consensus       130 le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy  209 (466)
T KOG0686|consen  130 LEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSY  209 (466)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhH
Confidence            34444455555555556777889999999999999999999999986654443 45577888888899999999999999


Q ss_pred             HHHHHhhhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875          175 FNKELRLHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL  218 (480)
Q Consensus       175 ~~~al~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al  218 (480)
                      ..+|.+....    .....+...+.-|.+.+.+++ |..|..++-.+.
T Consensus       210 ~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkk-yk~aa~~fL~~~  256 (466)
T KOG0686|consen  210 ISKAESTPDANENLAQEVPAKLKCAAGLANLLLKK-YKSAAKYFLLAE  256 (466)
T ss_pred             HHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHH-HHHHHHHHHhCC
Confidence            9998877311    111123345556667777778 999999887653

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.60  E-value=0.26  Score=34.36  Aligned_cols=68  Identities=13%  Similarity=0.128  Sum_probs=43.2

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC
Q psy875          157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD  226 (480)
Q Consensus       157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  226 (480)
                      .-|.=++...+.++|+..+.++++...+ ++....++-.+..+|...|+ |.+++.+...-++++++.++
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gk-yr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGK-YREMLAFALQQLEIAEELED   78 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccC
Confidence            3344444666677777777777766444 44556666667777777777 77777776666666665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=95.56  E-value=0.84  Score=44.40  Aligned_cols=173  Identities=13%  Similarity=0.014  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHhhhcC-
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQEKSF------EIVQSTHEKALDLARQN-  109 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~lg~~y~~~~~~~------~~A~~~~~kAl~~~~~~-  109 (480)
                      ....||..++..++|+.|...|+.+.+-+..+  ....+.++-.+|.+.+......      +....+++.|+..+... 
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            45668999999999999999999988875222  2334445555566644442221      36777888888766652 


Q ss_pred             ----CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--ccccc---HHHHHHHHHHHH--HhhccHHHHHHHHHHH
Q psy875          110 ----KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS--DLCKD---LASCYISLAQTY--KDNKQYNLAVDYFNKE  178 (480)
Q Consensus       110 ----~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~--~~~~~---~~~~~~~la~~y--~~~~~~~~A~~~~~~a  178 (480)
                          .....-..+....+.++...+.+.+|...+-+....  .....   .+..+-.+|.+|  ...........     
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~-----  364 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT-----  364 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccch-----
Confidence                222344556777888888999998888877755533  22222   344555566666  11100000000     


Q ss_pred             HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                            .....+..+..-|.-|.+.|+ ...|..+|.+|+.+...
T Consensus       365 ------r~RK~af~~vLAg~~~~~~~~-~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  365 ------RFRKYAFHMVLAGHRYSKAGQ-KKHALRCYKQALQVYEG  402 (414)
T ss_pred             ------hhHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhCC
Confidence                  012223333445778888899 99999999999987653

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0686|consensus

Probab=95.46  E-value=0.24  Score=46.11  Aligned_cols=116  Identities=10%  Similarity=0.022  Sum_probs=80.3

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875           24 LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKAL  103 (480)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl  103 (480)
                      +.-.+.....+.+-.++..+|..|..-|+++.|+++|.++..+ .......+..+.++-.+ ....|+|.....+-.+|.
T Consensus       137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~V-SI~~~nw~hv~sy~~~A~  214 (466)
T KOG0686|consen  137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILV-SIYMGNWGHVLSYISKAE  214 (466)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHH-HHhhcchhhhhhHHHHHH
Confidence            4444444455667889999999999999999999999999888 54455556666666566 555688998888888887


Q ss_pred             Hhhh----cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q psy875          104 DLAR----QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVL  143 (480)
Q Consensus       104 ~~~~----~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l  143 (480)
                      ....    ....-+  ..+...-|...+.+++|..|.++|-.+.
T Consensus       215 st~~~~~~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  215 STPDANENLAQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hCchhhhhHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6521    111111  1233344555566669999999888654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.45  E-value=0.58  Score=39.58  Aligned_cols=80  Identities=13%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875          129 HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      .-.-++|..-|.++- ..+.-+.+.....||..|. ..+.++|+..+.+++++...+....+.++..|+.+|..+|+ ++
T Consensus       119 r~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-~e  195 (203)
T PF11207_consen  119 RFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-YE  195 (203)
T ss_pred             ccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-hh
Confidence            334566776665543 2233344677888898888 56789999999999999887656668899999999999999 98


Q ss_pred             HHH
Q psy875          209 LVV  211 (480)
Q Consensus       209 ~A~  211 (480)
                      +|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            875

>KOG2041|consensus

Probab=95.33  E-value=2.3  Score=42.75  Aligned_cols=31  Identities=13%  Similarity=0.052  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy875           73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALD  104 (480)
Q Consensus        73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~  104 (480)
                      ....++.++|.. +..+..|++|.+||.+.-.
T Consensus       794 ~~e~A~r~ig~~-fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  794 GKEDAFRNIGET-FAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Confidence            356788999999 5555889999999876543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.31  E-value=0.36  Score=43.18  Aligned_cols=90  Identities=14%  Similarity=0.109  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy875          167 QYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH  244 (480)
Q Consensus       167 ~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  244 (480)
                      .-...++.+.+|++.+..  ...........+|..|+..|+ |++|..+|+.+....++.+-......++..+..++...
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            344567777788777655  345556677799999999999 99999999999989898888889999999999999999


Q ss_pred             CChHHHHHHHHHH
Q psy875          245 DKFTELEQIKTEL  257 (480)
Q Consensus       245 g~~~~A~~~~~~~  257 (480)
                      |+.+....+.-+.
T Consensus       232 ~~~~~~l~~~leL  244 (247)
T PF11817_consen  232 GDVEDYLTTSLEL  244 (247)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.31  E-value=2.3  Score=38.93  Aligned_cols=133  Identities=16%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             HhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhc-C---C---Cc-h
Q psy875           47 YKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQ-N---K---DD-K  113 (480)
Q Consensus        47 ~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~-~---~---~~-~  113 (480)
                      .+.+|+++.|..++.|+-.+.    .......+..++++|...+.. + +++.|..++++|+++... .   .   +. .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~-~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSK-KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            357899999999999998874    122234567889999984444 8 999999999999998543 1   1   11 3


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHH---HHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACS---ELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~---~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      ....++..++.+|...+.++...+   +.+......++  ....+..-=.+..+.++.+++.+.+.+.+...
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            456788999999999987664444   33333222322  12222222223333788888888888877653

It is also involved in sporulation [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.03  E-value=0.045  Score=31.09  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=17.8

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRL   66 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~   66 (480)
                      +++.+|.++...|++++|++.|++.++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4566666666666666666666666554

>KOG4814|consensus

Probab=94.92  E-value=4.5  Score=40.33  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                      .+..++.+-|.-..+..+|..|+++|..++...+.    ...+....+++.+|..+.+.+.|.+++++|-+.    .+..
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~----d~~~  427 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV----DRQS  427 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh----cccc
Confidence            44556778888899999999999999988765443    334778889999999999999999999999887    4444


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      +.....+-.+....++ -++|+....+.....
T Consensus       428 ~l~q~~~~~~~~~E~~-Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  428 PLCQLLMLQSFLAEDK-SEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHHHHHhcc-hHHHHHHHHHHHhhh
Confidence            5566667777778888 889998888776544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.82  E-value=1  Score=43.50  Aligned_cols=126  Identities=9%  Similarity=0.066  Sum_probs=89.1

Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-------------------
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-------------------  184 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-------------------  184 (480)
                      .-..+..+.++-++.-++|+++.  ++.+.+|..||.-.  ..-..+|+.+|+++++..+.                   
T Consensus       176 q~AWRERnp~aRIkaA~eALei~--pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~  251 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEIN--PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH  251 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence            33445567777888888888776  44556666665422  23356788888887766322                   


Q ss_pred             --CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          185 --NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       185 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                        +......+-..+|.+..++|+ .++|++.++..++...    ......+..+|..++..++.|.++...+.++.
T Consensus       252 ~Rdt~~~~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  252 RRDTNVLVYAKRRLAMCARKLGR-LREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             ccccchhhhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence              011124556789999999999 9999999988876531    22355688899999999999999999998874

The molecular function of this protein is uncertain.

>KOG0985|consensus

Probab=94.80  E-value=2.9  Score=44.03  Aligned_cols=191  Identities=18%  Similarity=0.121  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ...|..+|....+.|...+|++.|-+|-      .|   ..|...-.+ ..+.|.|++-++|+.-|-+-.+...-...+.
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dp---s~y~eVi~~-a~~~~~~edLv~yL~MaRkk~~E~~id~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DP---SNYLEVIDV-ASRTGKYEDLVKYLLMARKKVREPYIDSELI 1173 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhcC------Cc---HHHHHHHHH-HHhcCcHHHHHHHHHHHHHhhcCccchHHHH
Confidence            3467788888888889999988887652      12   223333344 3445889999888888876665554444444


Q ss_pred             HHHH---------------------HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875          117 TVMR---------------------SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF  175 (480)
Q Consensus       117 ~~~~---------------------~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~  175 (480)
                      .+|.                     ..|.-.+..|.|+.|.-+|..          ..-+..||.++..+|+|+-|....
T Consensus      1174 ~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred             HHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3333                     233333333444444333322          123455788888889999999888


Q ss_pred             HHHHhhh--hc------Cc-------------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875          176 NKELRLH--AR------NF-------------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM  234 (480)
Q Consensus       176 ~~al~~~--~~------~~-------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  234 (480)
                      +||-.+.  +.      +.             ...+.-+-.+-..|...|- +++-+..++.++-+      .......+
T Consensus      1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGy-FeElIsl~Ea~LGL------ERAHMgmf 1316 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGY-FEELISLLEAGLGL------ERAHMGMF 1316 (1666)
T ss_pred             hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCc-HHHHHHHHHhhhch------hHHHHHHH
Confidence            8764430  00      00             0112334456666777777 77777777777655      34555566


Q ss_pred             HHHHHHHHHcCChHHHHHHHH
Q psy875          235 RSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       235 ~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      ..||-+|.+- ++++-.+.++
T Consensus      1317 TELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred             HHHHHHHHhc-CHHHHHHHHH
Confidence            6777666554 3444444443

>KOG4507|consensus

Probab=94.73  E-value=0.077  Score=51.49  Aligned_cols=97  Identities=20%  Similarity=0.211  Sum_probs=62.0

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875           80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA  159 (480)
Q Consensus        80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la  159 (480)
                      ++|.+|+...|+...|+.++..|+...+...+     ....+|+.+....|-...|-.++.+++.+.....  ..++.+|
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g  683 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLG  683 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcc
Confidence            34555566667777777777777755443222     2234677777777777777777777766553322  4456677


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhh
Q psy875          160 QTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       160 ~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      +.|..+.+.+.|++.|+.|++...
T Consensus       684 ~~~l~l~~i~~a~~~~~~a~~~~~  707 (886)
T KOG4507|consen  684 NAYLALKNISGALEAFRQALKLTT  707 (886)
T ss_pred             hhHHHHhhhHHHHHHHHHHHhcCC
Confidence            777777777777777777777633

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.70  E-value=0.38  Score=43.05  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=51.2

Q ss_pred             cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc----cHHHHHHHHHHHHHhhc
Q psy875           91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK----DLASCYISLAQTYKDNK  166 (480)
Q Consensus        91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~la~~y~~~~  166 (480)
                      .-...+..+.+|+..++..+.......+...+|..|...|+|++|+++|+.+.......    -...++..+..++...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            34455666777776666666666666666677777777777777777777664333221    12445555666666666


Q ss_pred             cHHHHHHHH
Q psy875          167 QYNLAVDYF  175 (480)
Q Consensus       167 ~~~~A~~~~  175 (480)
                      +.+..+.+.
T Consensus       233 ~~~~~l~~~  241 (247)
T PF11817_consen  233 DVEDYLTTS  241 (247)
T ss_pred             CHHHHHHHH
Confidence            666555544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0376|consensus

Probab=94.54  E-value=0.057  Score=51.28  Aligned_cols=93  Identities=17%  Similarity=0.104  Sum_probs=58.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                      +-+.-++.-++|+.|+..|.+++...  ++.+..+.+-+..+.+.++|..|+.-+.++++.    .|....+|..-|.++
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIEL----DPTYIKAYVRRGTAV   82 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhc----CchhhheeeeccHHH
Confidence            34455556666777777777766544  333445555666666777777777766666666    456666666666666


Q ss_pred             HHhCCchHHHHHHHHHHHHH
Q psy875          201 ELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       201 ~~~~~~~~~A~~~~~~al~~  220 (480)
                      ...++ +.+|..-|++...+
T Consensus        83 m~l~~-~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   83 MALGE-FKKALLDLEKVKKL  101 (476)
T ss_pred             HhHHH-HHHHHHHHHHhhhc
Confidence            66666 66666666665544

>KOG1308|consensus

Probab=94.49  E-value=0.042  Score=49.78  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=77.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875           86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN  165 (480)
Q Consensus        86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~  165 (480)
                      +.. |.++.|+..+..|+.+..      ..+.+|...+.+++++++...|+.-+..++.+.++.  +.-|-.-|.....+
T Consensus       125 ln~-G~~~~ai~~~t~ai~lnp------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--a~~ykfrg~A~rll  195 (377)
T KOG1308|consen  125 LND-GEFDTAIELFTSAIELNP------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--AKGYKFRGYAERLL  195 (377)
T ss_pred             hcC-cchhhhhcccccccccCC------chhhhcccccceeeeccCCchhhhhhhhhhccCccc--ccccchhhHHHHHh
Confidence            344 677777777777776633      335667777777777777777777777777666442  34455566666677


Q ss_pred             ccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy875          166 KQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEK  216 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  216 (480)
                      |+|++|-.++..+.++--+  .....-...-+.+.+-...++ ++.+.+.-..
T Consensus       196 g~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k-~er~~~e~~~  247 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRK-YERAREEREI  247 (377)
T ss_pred             hchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhH-HHHHHHHhcc
Confidence            7777777777777666222  233334445556666666677 7777766643

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.38  E-value=4  Score=39.03  Aligned_cols=134  Identities=13%  Similarity=0.105  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHH--HHHHH---Hhh
Q psy875           33 CKDLASCYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQST--HEKAL---DLA  106 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~--~~kAl---~~~  106 (480)
                      ...++..++..|.-+++.|+ -++|++.++.+++. .+   ....+-+.+ .. +.. ..|.+|+..  +.+.+   ...
T Consensus       375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~---yD~ec~n~v-~~-fvK-q~Y~qaLs~~~~~rLlkLe~fi  447 (549)
T PF07079_consen  375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-TN---YDIECENIV-FL-FVK-QAYKQALSMHAIPRLLKLEDFI  447 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-cc---ccHHHHHHH-HH-HHH-HHHHHHHhhhhHHHHHHHHHHH
Confidence            34567777888999999888 89999999999988 22   222221111 11 111 234444321  11111   111


Q ss_pred             hcCCCc------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875          107 RQNKDD------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK  177 (480)
Q Consensus       107 ~~~~~~------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~  177 (480)
                      ...+-+      ..++. ...=|...+..|+|.++.-|-.-...+.|.+   .+|..+|.+....++|++|..++..
T Consensus       448 ~e~gl~~i~i~e~eian-~LaDAEyLysqgey~kc~~ys~WL~~iaPS~---~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  448 TEVGLTPITISEEEIAN-FLADAEYLYSQGEYHKCYLYSSWLTKIAPSP---QAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HhcCCCcccccHHHHHH-HHHHHHHHHhcccHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            111111      12221 2233456678899999998888666666633   5788899999999999999999865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.33  E-value=4.8  Score=38.08  Aligned_cols=124  Identities=15%  Similarity=0.118  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc--cHHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hhhc------
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK--DLASCYISLAQTYKDNKQYNLAVDYFNKELR-LHAR------  184 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~~~------  184 (480)
                      ..+..+..++.+.++.|+++.|..++.++....+..  ....+...-+.+.-..|+..+|+..++..+. ....      
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            445677789999999999999999999887654321  1346677788999999999999999988777 2111      


Q ss_pred             -----------------------CcHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875          185 -----------------------NFPEAVKTLGEIGDLYELQ------EKPFELVVSTHEKALDLARQNKDDKLIRTVMR  235 (480)
Q Consensus       185 -----------------------~~~~~~~~~~~l~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  235 (480)
                                             .....+.++..+|......      +. .+++...|.++..+      .+....++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~-~~~~~~~~~~a~~~------~~~~~k~~~  296 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES-SDEILKYYKEATKL------DPSWEKAWH  296 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHHHh------ChhHHHHHH
Confidence                                   2344567788888887777      77 88899999999877      444445666


Q ss_pred             HHHHHHHHc
Q psy875          236 SMKKLYKKH  244 (480)
Q Consensus       236 ~l~~~~~~~  244 (480)
                      .+|..+.+.
T Consensus       297 ~~a~~~~~~  305 (352)
T PF02259_consen  297 SWALFNDKL  305 (352)
T ss_pred             HHHHHHHHH
Confidence            666665544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.31  E-value=4.9  Score=38.02  Aligned_cols=173  Identities=14%  Similarity=0.097  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      .+..++=..|..-.+|+.-++.++..-.+-..+.......-...|.+ ...   .|+.++|+..+..++.-.... +   
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafA-LnRrn~~gdre~Al~il~~~l~~~~~~-~---  216 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFA-LNRRNKPGDREKALQILLPVLESDENP-D---  216 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHH-HhhcccCCCHHHHHHHHHHHHhccCCC-C---
Confidence            34455666677888888888887776555111112222333445666 444   699999999998876443221 1   


Q ss_pred             HHHHHHHHHHHHHh---------cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH-HHhhh--
Q psy875          115 IRTVMRSIKKLYKK---------HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK-ELRLH--  182 (480)
Q Consensus       115 ~~~~~~~l~~~y~~---------~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~-al~~~--  182 (480)
                       ..++..+|.+|-.         ....++|+..|.++....++.   ..-.|++.++.-.|.-.+...-.++ ++.+.  
T Consensus       217 -~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l  292 (374)
T PF13281_consen  217 -PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSL  292 (374)
T ss_pred             -hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence             2234444444432         335889999999998777432   3345666666666653333322333 22221  


Q ss_pred             ---hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          183 ---AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       183 ---~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                         ++  ........+-.++.+..-.|+ +++|...++++.+.
T Consensus       293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d-~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  293 LGRKGSLEKMQDYWDVATLLEASVLAGD-YEKAIQAAEKAFKL  334 (374)
T ss_pred             HHhhccccccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhc
Confidence               11  122223334567778888899 99999999999866

>smart00028 TPR Tetratricopeptide repeats

Probab=94.31  E-value=0.082  Score=29.29  Aligned_cols=28  Identities=29%  Similarity=0.584  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      ++..+|.++..++++++|+.++++++++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4556666777777777777776666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4814|consensus

Probab=94.28  E-value=6.5  Score=39.32  Aligned_cols=99  Identities=12%  Similarity=0.117  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ++-+-|.-.++..+|..|+++|...+...  .......+.....++.+ |..+.+.+.|.+++++|-+..++.      .
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C-YL~L~QLD~A~E~~~EAE~~d~~~------~  428 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC-YLKLEQLDNAVEVYQEAEEVDRQS------P  428 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhcccc------H
Confidence            44455666778899999999999999886  33334456777888888 555599999999999998775433      2


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhc
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLS  144 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~  144 (480)
                      .....+-.+...-+.-++|+.+..+...
T Consensus       429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  429 LCQLLMLQSFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            2333455666777888999998886554

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.22  E-value=0.23  Score=40.90  Aligned_cols=111  Identities=17%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH---H-HHHhcCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV---Q-SLLKQGHP  410 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~---~-~ll~~g~~  410 (480)
                      ..+.++-.||+..+.++|+|+-.   +....                  +-.+.+-.|....+.++.   - .++++..+
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~q---nL~i~------------------~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~  133 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQ---NLHIY------------------NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMS  133 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhh---ccCCC------------------CchhhhhhhhhccchhHHHHHHHHHHhhccc
Confidence            44567778888889999998822   11111                  133445666666665431   1 12222221


Q ss_pred             CCCCCCC--CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          411 VKVQDSA--GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       411 ~~~~~~~--g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      ....|..  -..-|.+|+..|..+.+.-.+++|.+++        .++|..|+..+|..++.+++.
T Consensus       134 ~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  134 EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--------HHHHHHHHHhhHHHHHHHhhc
Confidence            1111100  0112568999999999999999998877        289999999999999988864

These proteins may be involved in promoting survival of infected macrophages [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.16  E-value=2.7  Score=34.55  Aligned_cols=100  Identities=11%  Similarity=0.057  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH--HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA--SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                      ..+....+.+....|+-..|+.+|.+.-...+.|...  .+...-+.++.+.|-|++-..-.+   .+..+..+....+.
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srve---pLa~d~n~mR~sAr  170 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE---PLAGDGNPMRHSAR  170 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhh---hccCCCChhHHHHH
Confidence            3456788999999999999999999887766666553  344556778888899987655432   23333466777888


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      ..||..-++.|+ +.+|...|.+...
T Consensus       171 EALglAa~kagd-~a~A~~~F~qia~  195 (221)
T COG4649         171 EALGLAAYKAGD-FAKAKSWFVQIAN  195 (221)
T ss_pred             HHHhHHHHhccc-hHHHHHHHHHHHc
Confidence            899999999999 9999999988754

>KOG0687|consensus

Probab=94.03  E-value=3  Score=37.95  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .....++..+|..|.+-|+-+.|++.+.+..+-.  .+...+...+...+|.+|    ++.+-..+..++|-.+..+.+|
T Consensus       101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy----~D~~lV~~~iekak~liE~GgD  176 (393)
T KOG0687|consen  101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY----LDHDLVTESIEKAKSLIEEGGD  176 (393)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhCCC
Confidence            3567899999999999999999999999887764  344555666677788884    4566667778888888888887


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC  148 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~  148 (480)
                      .......-.--|.......+|.+|...|-.++.....
T Consensus       177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            7544433344556666778999999999988765554

>smart00028 TPR Tetratricopeptide repeats

Probab=93.65  E-value=0.12  Score=28.59  Aligned_cols=31  Identities=19%  Similarity=0.227  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDL  147 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~  147 (480)
                      .++..+|.++..++++++|+.++++++...+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3578899999999999999999999886543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4014|consensus

Probab=93.54  E-value=1.8  Score=35.86  Aligned_cols=158  Identities=13%  Similarity=0.123  Sum_probs=94.8

Q ss_pred             ccHHHHH-HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Q psy875           90 KSFEIVQ-STHEKALDLARQNKDDKLIRTVMRSIKKLYKK-----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYK  163 (480)
Q Consensus        90 ~~~~~A~-~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~  163 (480)
                      |+|-+++ +-|++|..+++..-+........+.+|..+..     .++...|+++|..+...    +...+..++|.+.-
T Consensus        41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----n~~~aC~~~gLl~~  116 (248)
T KOG4014|consen   41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----NIPQACRYLGLLHW  116 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----CCHHHHhhhhhhhc
Confidence            4554544 44666666666666665555566666655442     34789999999988752    23344555665554


Q ss_pred             hh-----cc--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH------------------------hCCchHHHHH
Q psy875          164 DN-----KQ--YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL------------------------QEKPFELVVS  212 (480)
Q Consensus       164 ~~-----~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~~~A~~  212 (480)
                      .-     ++  ..+|++|+.++-++-.      ..+.++|+..|..                        .++ .++|.+
T Consensus       117 ~g~~~r~~dpd~~Ka~~y~traCdl~~------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kD-Mdka~q  189 (248)
T KOG4014|consen  117 NGEKDRKADPDSEKAERYMTRACDLED------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKD-MDKALQ  189 (248)
T ss_pred             cCcCCccCCCCcHHHHHHHHHhccCCC------chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHh-HHHHHH
Confidence            22     23  6789999988766521      2223333333332                        233 566666


Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhcc
Q psy875          213 THEKALDLARQNKDDKLIRTVMRSMKKLYKKH----DKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       213 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      +.-+|-++        ....+..++++.|..-    ++.++|..|-.++.++.+.+..
T Consensus       190 fa~kACel--------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k  239 (248)
T KOG4014|consen  190 FAIKACEL--------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK  239 (248)
T ss_pred             HHHHHHhc--------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence            66666554        1234445666666532    4678899999999998877654

>KOG2053|consensus

Probab=93.50  E-value=1.2  Score=45.97  Aligned_cols=87  Identities=13%  Similarity=0.015  Sum_probs=63.1

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~  169 (480)
                      ++|.+|+.-..+.++-.+   +   ...+...-|.+..++|+.++|..+++..-.....  --..+.-+-.+|.++++++
T Consensus        23 ~qfkkal~~~~kllkk~P---n---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHP---N---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HHHHHHHHHHHHHHHHCC---C---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhh
Confidence            678888777776665433   2   2334445677889999999999777743322222  2356777889999999999


Q ss_pred             HHHHHHHHHHhhhhc
Q psy875          170 LAVDYFNKELRLHAR  184 (480)
Q Consensus       170 ~A~~~~~~al~~~~~  184 (480)
                      +|..+|++++...++
T Consensus        95 ~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   95 EAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHHHhhCCc
Confidence            999999999987554

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.32  E-value=5.5  Score=35.29  Aligned_cols=179  Identities=13%  Similarity=0.121  Sum_probs=90.6

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      +..+|.+....++|++++.++.+++.. ......  .-.+.++.+|....|....+...+.....-....+.......+-
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~-~~eLt~--eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~   80 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEM-NPELTE--EERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK   80 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHT-SS---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-CCCCCH--HHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence            567888999999999999999999988 322222  22244555654554555555555544333222222221111111


Q ss_pred             HHHHHHHHhcC-ChHHHHHHHHHHhcccc-ccc-HHHHHHHHHHHHHhh-----c-----cHHHHHHHHHHHHhhhhc--
Q psy875          120 RSIKKLYKKHD-NLDSACSELHTVLSSDL-CKD-LASCYISLAQTYKDN-----K-----QYNLAVDYFNKELRLHAR--  184 (480)
Q Consensus       120 ~~l~~~y~~~~-~~~~A~~~~~~~l~~~~-~~~-~~~~~~~la~~y~~~-----~-----~~~~A~~~~~~al~~~~~--  184 (480)
                      ...-.+-..+. --.+.+......+-... .+. .+..+-..|..|...     |     -.++|...|++|+++...  
T Consensus        81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L  160 (236)
T PF00244_consen   81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL  160 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence            11111111100 11122222222221110 111 111122223333211     1     236888899998888555  


Q ss_pred             --CcHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHH
Q psy875          185 --NFPEAVKTLGEIGDLYEL-QEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       185 --~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~~~  222 (480)
                        .+|.......|.+..|+. .|+ .++|....++|+..+.
T Consensus       161 ~~~~p~rLgl~LN~svF~yei~~~-~~~A~~ia~~afd~a~  200 (236)
T PF00244_consen  161 PPTHPLRLGLALNYSVFYYEILND-PEKAIEIAKQAFDEAI  200 (236)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHH
Confidence              456666666677776655 566 9999999998887654

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.28  E-value=0.15  Score=30.14  Aligned_cols=29  Identities=21%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      +|..||.+-...++|++|+.-|++++++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3783|consensus

Probab=93.05  E-value=9.7  Score=37.37  Aligned_cols=79  Identities=8%  Similarity=0.036  Sum_probs=65.5

Q ss_pred             CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHH
Q psy875          185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD-LARQNKDDKLIRTVMRSMKKLYKKHDK-FTELEQIKTELKSLEE  262 (480)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~l~~  262 (480)
                      +......-+..+|.++..+|+ -..|..+|..+++ ...+..+......+++.||-+|..+|. ..++..++.+|.+...
T Consensus       444 d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~  522 (546)
T KOG3783|consen  444 DSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS  522 (546)
T ss_pred             CchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence            445556677889999999999 8999999998875 444566778888999999999999999 9999999999988654


Q ss_pred             hh
Q psy875          263 KL  264 (480)
Q Consensus       263 ~~  264 (480)
                      ..
T Consensus       523 dY  524 (546)
T KOG3783|consen  523 DY  524 (546)
T ss_pred             cc
Confidence            33

>KOG2114|consensus

Probab=92.90  E-value=5.4  Score=41.14  Aligned_cols=49  Identities=14%  Similarity=0.258  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875           97 STHEKALDLARQNK-DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS  145 (480)
Q Consensus        97 ~~~~kAl~~~~~~~-~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~  145 (480)
                      ..|.-|+.+++... +...+..+....|...+..|+|++|...|-+.+..
T Consensus       348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            34555666666554 34667788899999999999999999999987743

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=92.88  E-value=1.6  Score=48.60  Aligned_cols=186  Identities=10%  Similarity=0.019  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH---HHHHHHhcc-----
Q psy875           74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC---SELHTVLSS-----  145 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~---~~~~~~l~~-----  145 (480)
                      .++..-.+|.. +...|.+..|+++|..|+...+..+|.-+++.++-.++.+..-.+-..--.   .........     
T Consensus       241 ~gR~~k~~gd~-~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~  319 (1185)
T PF08626_consen  241 KGRLQKVLGDL-YLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS  319 (1185)
T ss_pred             hhhhhhhhhhH-HHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence            34555667999 555599999999999999999999999999999888776655443211000   000000000     


Q ss_pred             -----------cccccH-------HHHHHHHHHHHH-hhccHHHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHHHhC
Q psy875          146 -----------DLCKDL-------ASCYISLAQTYK-DNKQYNLAVDYFNKELRLHARN--FPEAVKTLGEIGDLYELQE  204 (480)
Q Consensus       146 -----------~~~~~~-------~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~  204 (480)
                                 ...|..       .....++..... -...+++|+.+|.++.....+.  ..-...+...++.++....
T Consensus       320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~  399 (1185)
T PF08626_consen  320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH  399 (1185)
T ss_pred             ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence                       000000       000011111111 1235789999999987554442  2234566677777777777


Q ss_pred             --------------------CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          205 --------------------KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       205 --------------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                                          . -.++..++.+++......-....+..++..+|.+|...|-..++--+.+++....
T Consensus       400 ~~~~l~~iV~~~~~~~~~~~~-~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~  475 (1185)
T PF08626_consen  400 LSDNLDHIVKRPLTPTPNISS-RSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL  475 (1185)
T ss_pred             cccchhhhhccccccccCCCC-HHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence                                6 7889999999988765445667888999999999999999999888888877654

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.75  E-value=6.4  Score=37.41  Aligned_cols=145  Identities=12%  Similarity=0.093  Sum_probs=93.6

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc------------c---------------ccHHHHHHHHHHHHHh
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL------------C---------------KDLASCYISLAQTYKD  164 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~------------~---------------~~~~~~~~~la~~y~~  164 (480)
                      .+....++..++.++..+|+++.|.++.++++-...            +               .....+.........+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            355667888999999999999999999887762211            0               2234566667788889


Q ss_pred             hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHH
Q psy875          165 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       165 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~  243 (480)
                      .|-+..|+++.+-.+.+-...+|.  .+.+.|=....+.++ |+--++.++......  ..+ ...........+-++..
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~-y~~Li~~~~~~~~~~--~~~~~~~lPn~a~S~aLA~~~  190 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQ-YQWLIDFSESPLAKC--YRNWLSLLPNFAFSIALAYFR  190 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCC-HHHHHHHHHhHhhhh--hhhhhhhCccHHHHHHHHHHH
Confidence            999999999999998885553332  233444444555666 776666666544320  000 00112344455666666


Q ss_pred             cCCh---------------HHHHHHHHHHHHHH
Q psy875          244 HDKF---------------TELEQIKTELKSLE  261 (480)
Q Consensus       244 ~g~~---------------~~A~~~~~~~~~l~  261 (480)
                      .++.               ++|...++++....
T Consensus       191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  191 LEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             hcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            7666               78888888776543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4322|consensus

Probab=92.73  E-value=9.3  Score=36.34  Aligned_cols=171  Identities=12%  Similarity=0.003  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .-....+..+.++....++..|-....+..-..  ..+..........++.+ +...+..-.+..+.-.++....+...+
T Consensus       271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~-~~~g~~a~l~lplaL~~~~~~sey~ld  349 (482)
T KOG4322|consen  271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEA-RESGDTACLNLPLALMFEFKRSEYSLD  349 (482)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHHHhccc
Confidence            344556668888888888888888888765442  23334456677777888 555477777888887777776666666


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--------c---cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--------K---DLASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--------~---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      ...+.+-.+++..+.-+|..++|+..+..+......        .   -.+.++..-+..+ ...+.+.+..++++|-.+
T Consensus       350 yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~  428 (482)
T KOG4322|consen  350 YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSI  428 (482)
T ss_pred             hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHH
Confidence            667777789999999999999999999866532111        0   0122232233333 556788888888888777


Q ss_pred             hhc--CcHHHHHHHHHHHHHHHHhCCchH
Q psy875          182 HAR--NFPEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       182 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      ...  -+.....+.+-.+..|-..|+ -+
T Consensus       429 f~kL~~he~ildv~yf~A~~yn~lGd-~~  456 (482)
T KOG4322|consen  429 FYKLGCHEKILDVTYFSAYQYNHLGD-SP  456 (482)
T ss_pred             HHHccchHHHHHHHHHHHHHHHhhcC-ch
Confidence            665  455677888888999999988 54

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.62  E-value=0.55  Score=30.28  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRL   66 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~   66 (480)
                      .+++.+|..+++.|+|++|.++.+.++++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            46788899999999999999999999998

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.59  E-value=0.47  Score=30.59  Aligned_cols=28  Identities=25%  Similarity=0.311  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      +++.+|..+.++|+|++|..+.+..+++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3455566666666666666666666665

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.57  E-value=2  Score=32.42  Aligned_cols=41  Identities=10%  Similarity=-0.028  Sum_probs=29.0

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Q psy875           43 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL   84 (480)
Q Consensus        43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~   84 (480)
                      ++.-++.+|++-+|++..+..+.. .++....+..+..-|.+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~-h~~~~~~~~lh~~QG~i   42 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISR-HGEDESSWLLHRLQGTI   42 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHH-ccCCCchHHHHHHHhHH
Confidence            456788999999999999999888 44443333444445666

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.20  E-value=0.25  Score=29.28  Aligned_cols=28  Identities=21%  Similarity=0.455  Sum_probs=14.5

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRL   66 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~   66 (480)
                      +|..||.+....++|++|++-|.+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4444555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.11  E-value=1.2  Score=37.65  Aligned_cols=55  Identities=18%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cH-HHHHHHHHHHHHhhccHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DL-ASCYISLAQTYKDNKQYNLAV  172 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~-~~~~~~la~~y~~~~~~~~A~  172 (480)
                      .....+|..|. ..+.++|+..+.+++...... .+ ..++..|+.+|..+|++++|-
T Consensus       142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            34455666555 556777777777777655443 22 566777777777777777764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.97  E-value=9.6  Score=37.36  Aligned_cols=47  Identities=21%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875          125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE  178 (480)
Q Consensus       125 ~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a  178 (480)
                      +..+.|+++.|.+..++.       .....|..||.....+|+++-|.++|+++
T Consensus       327 LAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  327 LALQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            344556666555444321       11235666666666666666666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=91.63  E-value=2.8  Score=32.16  Aligned_cols=70  Identities=6%  Similarity=-0.043  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD---------KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      +..+|+..++.++ +-.++-.|++|+.+.++....         ........+||.++..+|+.+-.++|++-+.+.--.
T Consensus         4 htllAd~a~~~~~-~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    4 HTLLADQAFKEAD-PLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             HHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            4456777777777 777888888888777665210         112234569999999999999999999988764433

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=91.59  E-value=12  Score=42.13  Aligned_cols=49  Identities=10%  Similarity=0.125  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHH
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIG   82 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg   82 (480)
                      +..++..-.+|..|...|.+.+|++.|.+|++.+  .++.-+.+.++-.++
T Consensus       239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~  289 (1185)
T PF08626_consen  239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIA  289 (1185)
T ss_pred             hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHH
Confidence            4567888899999999999999999999999986  444445555554443

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG4507|consensus

Probab=91.56  E-value=3.4  Score=40.73  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      ..+.+++..|+...|+.-+|..++..|+........    -.+...+|.+..+.|...+|--.+..|+...+  ....-+
T Consensus       213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k----di~lLSlaTiL~RaG~sadA~iILhAA~~dA~--~~t~n~  286 (886)
T KOG4507|consen  213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK----DIALLSLATVLHRAGFSADAAVILHAALDDAD--FFTSNY  286 (886)
T ss_pred             HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc----cchhhhHHHHHHHcccccchhheeehhccCCc--cccccc
Confidence            345677888888889999999999999988765322    23566899999999999999888877775443  333448


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      +.+|.+|..+++|...+.+|..+.+..+.
T Consensus       287 y~l~~i~aml~~~N~S~~~ydha~k~~p~  315 (886)
T KOG4507|consen  287 YTLGNIYAMLGEYNHSVLCYDHALQARPG  315 (886)
T ss_pred             eeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence            88999999999999999999988877433

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.34  E-value=2.2  Score=36.54  Aligned_cols=92  Identities=17%  Similarity=0.226  Sum_probs=61.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCC----CCCChHHHHHHH--cCCHHHHHHHHHcC-CCCCCccC-CCCCCcH
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD----SAGWLPLHEAAN--HGHTDIVQALVSAG-ADPNDKVQ-DSAGWLP  456 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~----~~g~t~l~~a~~--~~~~~~~~~Ll~~g-~~~~~~~~-~~~g~tp  456 (480)
                      -.+++-++...+..+++-+|+.+- .....|    ..+.--+-++..  .....++++++.+| +++|.+.+ -..|.|-
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            456777777777888888888751 111111    112222333333  23467889999987 45564332 2469999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC
Q psy875          457 LHEAANHGHTDIVQALVSAGA  477 (480)
Q Consensus       457 l~~A~~~~~~~~~~~Ll~~ga  477 (480)
                      |.-|...++.+|+.+|+++||
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCc
Confidence            999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0985|consensus

Probab=91.29  E-value=11  Score=39.92  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=12.7

Q ss_pred             HHHHHhccccHHHHHHHHHH
Q psy875           43 LAQTYKDNKQYNLAVDYFNK   62 (480)
Q Consensus        43 lg~~~~~~~~~~~A~~~~~~   62 (480)
                      +|.+....+-|++|...|.+
T Consensus      1054 ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHH
Confidence            45556666667777766654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.97  E-value=12  Score=33.90  Aligned_cols=154  Identities=13%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             HhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc
Q psy875           87 LQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK  166 (480)
Q Consensus        87 ~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~  166 (480)
                      ...|++.+|...+..++......      ..+...++.+|...|+.+.|...+...-.......... ...--..+.+..
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa  217 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAA  217 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHh
Confidence            44488899999999888876654      44566788999999999998888875332222111111 000011111222


Q ss_pred             cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875          167 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK  246 (480)
Q Consensus       167 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  246 (480)
                      ...+.... ++.+..    .|.....-+.+|..+...|+ ++.|.+.+-..++.-+...+.    .+-..|-.++...|.
T Consensus       218 ~~~~~~~l-~~~~aa----dPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~~d~----~~Rk~lle~f~~~g~  287 (304)
T COG3118         218 ATPEIQDL-QRRLAA----DPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGFEDG----EARKTLLELFEAFGP  287 (304)
T ss_pred             cCCCHHHH-HHHHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcccccCc----HHHHHHHHHHHhcCC
Confidence            22211111 111111    34445677889999999999 999999887766553333333    344556677777774


Q ss_pred             hH-HHHHHHHHH
Q psy875          247 FT-ELEQIKTEL  257 (480)
Q Consensus       247 ~~-~A~~~~~~~  257 (480)
                      -+ .+..+.++.
T Consensus       288 ~Dp~~~~~RRkL  299 (304)
T COG3118         288 ADPLVLAYRRKL  299 (304)
T ss_pred             CCHHHHHHHHHH
Confidence            43 445554443

>KOG1538|consensus

Probab=90.90  E-value=19  Score=36.34  Aligned_cols=85  Identities=15%  Similarity=0.116  Sum_probs=44.3

Q ss_pred             HHHHHHHhccccHHHHHHHHHHH------HHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKE------LRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ..+|.++...|.|.+|-+.|.+.      ++++      .-.-++..++- +...|.-++-....+|--+.+...+.++ 
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmy------TDlRMFD~aQE-~~~~g~~~eKKmL~RKRA~WAr~~kePk-  707 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMY------TDLRMFDYAQE-FLGSGDPKEKKMLIRKRADWARNIKEPK-  707 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHH------HHHHHHHHHHH-HhhcCChHHHHHHHHHHHHHhhhcCCcH-
Confidence            45677777788888888877653      2220      01112333444 2222544444444444444444443332 


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSEL  139 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~  139 (480)
                            .-+.+....|+..+|+...
T Consensus       708 ------aAAEmLiSaGe~~KAi~i~  726 (1081)
T KOG1538|consen  708 ------AAAEMLISAGEHVKAIEIC  726 (1081)
T ss_pred             ------HHHHHhhcccchhhhhhhh
Confidence                  2345666777777777654

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.82  E-value=5.3  Score=30.24  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhh----ccHHH-------HHHHHHHHHhhhhcCcHHH
Q psy875          122 IKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDN----KQYNL-------AVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~----~~~~~-------A~~~~~~al~~~~~~~~~~  189 (480)
                      ++.-++..|++-+|++..+..+....+... ...+..-|.++.++    .+.+-       |++.|.++..+    .|..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----sp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----SPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----ChhH
Confidence            356678889999999999887765544332 24444556666544    33333       44444454444    4555


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +..++.+|.-+-...- |+++....++++.+
T Consensus        78 A~~L~~la~~l~s~~~-Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   78 AHSLFELASQLGSVKY-YKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence            6666666665444444 56666655555543

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=90.44  E-value=13  Score=33.45  Aligned_cols=108  Identities=6%  Similarity=-0.065  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH-
Q psy875           73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-  151 (480)
Q Consensus        73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-  151 (480)
                      ....++.++|.. |.+.++.+.+.++..+.++-+...+-.-.+..+-..+|.+|..+.=.++.++.....++..-+.+. 
T Consensus       113 e~~ea~~n~aey-Y~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr  191 (412)
T COG5187         113 EGSEADRNIAEY-YCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR  191 (412)
T ss_pred             HHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence            345666777776 344477777777776666555444444444444556666666655555555544444332222111 


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      ...-...|.......+|.+|-..+-..+..
T Consensus       192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t  221 (412)
T COG5187         192 NRYKVYKGIFKMMRRNFKEAAILLSDILPT  221 (412)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence            111222344445555666666666555544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.25  E-value=0.34  Score=25.84  Aligned_cols=21  Identities=14%  Similarity=0.116  Sum_probs=9.9

Q ss_pred             HHHHHHHHHhhccHHHHHHHH
Q psy875          155 YISLAQTYKDNKQYNLAVDYF  175 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~  175 (480)
                      ...+|.++..+|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344444555555555544443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3807|consensus

Probab=90.13  E-value=9.8  Score=34.83  Aligned_cols=60  Identities=10%  Similarity=0.024  Sum_probs=41.7

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLA  106 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~  106 (480)
                      -+.+-...++..+...-++.-..|+++    ++.-+.+|..++.- ..  .-..+|.+.+++|++..
T Consensus       187 e~eIMQ~AWRERnp~~RI~~A~~ALeI----N~eCA~AyvLLAEE-Ea--~Ti~~AE~l~k~ALka~  246 (556)
T KOG3807|consen  187 EDEIMQKAWRERNPPARIKAAYQALEI----NNECATAYVLLAEE-EA--TTIVDAERLFKQALKAG  246 (556)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhc----CchhhhHHHhhhhh-hh--hhHHHHHHHHHHHHHHH
Confidence            344445566777888888888888888    67777777777654 22  24667788888888654

>KOG2114|consensus

Probab=89.91  E-value=20  Score=37.20  Aligned_cols=43  Identities=12%  Similarity=0.105  Sum_probs=34.7

Q ss_pred             hhhhhhhh-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy875           24 LHTVLSSD-LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL   66 (480)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   66 (480)
                      +.++.+.. ....++.++..-|...+.+|++++|+..|-+++..
T Consensus       354 i~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  354 INLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            55665544 44567788888999999999999999999999876

>KOG1497|consensus

Probab=89.01  E-value=18  Score=33.06  Aligned_cols=106  Identities=17%  Similarity=0.170  Sum_probs=71.3

Q ss_pred             ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                      ...+.+...||.+|.+.++|..|-..+. ++..-.+    +.......+..+|++|.+.++ ..+|..+..++--+.-..
T Consensus       100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d-~veae~~inRaSil~a~~  177 (399)
T KOG1497|consen  100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDD-KVEAEAYINRASILQAES  177 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhhhcc
Confidence            4557778889999999999988876652 2222111    234456677889999999998 888888888775443334


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          225 KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       225 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                      .+.......-.--+++.-..++|-+|-+-|-+
T Consensus       178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye  209 (399)
T KOG1497|consen  178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE  209 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555567777778887666544443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.99  E-value=21  Score=33.74  Aligned_cols=199  Identities=10%  Similarity=-0.012  Sum_probs=107.8

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875           42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS  121 (480)
Q Consensus        42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~  121 (480)
                      .-|.+-.-.|+-..|.+.-.++-++...+.+  ..++..-++.-... |+++.|.+-|+..+.      ++..-..-+..
T Consensus        89 StGliAagAGda~lARkmt~~~~~llssDqe--pLIhlLeAQaal~e-G~~~~Ar~kfeAMl~------dPEtRllGLRg  159 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLSSDQE--PLIHLLEAQAALLE-GDYEDARKKFEAMLD------DPETRLLGLRG  159 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhhccch--HHHHHHHHHHHHhc-CchHHHHHHHHHHhc------ChHHHHHhHHH
Confidence            3455555677888888887777765322222  22223335553344 888888877766553      22221222333


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh--hhcCcHHHHHHHHHHHHH
Q psy875          122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL--HARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~  199 (480)
                      |-.--..+|..+-|..|-+.+....+  .+..+....-...+..|+|+.|++..+.....  ...+.-+...+-..-+..
T Consensus       160 LyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA  237 (531)
T COG3898         160 LYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA  237 (531)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence            33344567888888888887765553  33344444445556778888888888765543  222222222233333333


Q ss_pred             HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      .....-|...|.....+++++      .+...-.-..-+..+.+.|+..++-..++.+
T Consensus       238 ~s~ldadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~a  289 (531)
T COG3898         238 MSLLDADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETA  289 (531)
T ss_pred             HHHhcCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence            333333356666666666655      2222223333455566666666665555444

>KOG4521|consensus

Probab=88.91  E-value=25  Score=37.99  Aligned_cols=189  Identities=9%  Similarity=-0.003  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHH-HHHHH--HHHHHHhhcc----HHHHHHHHHHHHHhhhcCCC
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK-TLGEI--GDLYELQEKS----FEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~l--g~~y~~~~~~----~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ..+.+|..|...|...+|+.+|.+|..-..... -.-. .+...  +.. -.+ |+    -..|..||.+++++....+.
T Consensus       922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~s-v~d-G~t~s~e~t~lhYYlkv~rlle~hn~  998 (1480)
T KOG4521|consen  922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFS-VAD-GKTPSEELTALHYYLKVVRLLEEHNH  998 (1480)
T ss_pred             HHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCc-hhc-CCCCCchHHHHHHHHHHHHHHHHhcc
Confidence            457889999999999999999999987621111 1101 11100  000 011 21    23367788888877665433


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                                          .+.++..-.+|+..-+.  +..+.++..+-+-..++|.+-+|.+.+-+   .  .+....
T Consensus       999 --------------------~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---n--pdserr 1053 (1480)
T KOG4521|consen  999 --------------------AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---N--PDSERR 1053 (1480)
T ss_pred             --------------------HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---C--CcHHHH
Confidence                                23333333344433222  55566677777777788888777655422   1  112233


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHH-----HHHHHHH---HHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVS-----THEKALD---LARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~-----~~~~al~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                      -.++..+-.+.++.|+ .+.-.+     .-++...   -......+.+....|..|--++...+|+.+|-.+.-+
T Consensus      1054 rdcLRqlvivLfecg~-l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGE-LEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred             HHHHHHHHHHHHhccc-hHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence            4455566666666666 432111     0011111   1111234455566777788888889999887655433

>KOG3364|consensus

Probab=88.73  E-value=4.6  Score=31.73  Aligned_cols=67  Identities=15%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          116 RTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      ....+++++......   +..+.+..++..+........-.+.+.||.-+++.++|++|+.|.+..++.-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            345678888887765   5667888888888622223335677889999999999999999999988873

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.67  E-value=13  Score=30.86  Aligned_cols=143  Identities=11%  Similarity=0.019  Sum_probs=94.7

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~  169 (480)
                      +.-.++-..|..||+++.                     .++.++|+.-|...-...-...-..+....|.+..+.|+..
T Consensus        53 s~as~sgd~flaAL~lA~---------------------~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta  111 (221)
T COG4649          53 SRASKSGDAFLAALKLAQ---------------------ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA  111 (221)
T ss_pred             cccccchHHHHHHHHHHH---------------------cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH
Confidence            555555666666666654                     35566777777655433333333566788899999999999


Q ss_pred             HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875          170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE  249 (480)
Q Consensus       170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  249 (480)
                      .|+.+|.++-.-..-.....-.+...-+.++...|- |++.....+--     .....+....+...|+..-.+.|++..
T Consensus       112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs-y~dV~srvepL-----a~d~n~mR~sArEALglAa~kagd~a~  185 (221)
T COG4649         112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS-YDDVSSRVEPL-----AGDGNPMRHSAREALGLAAYKAGDFAK  185 (221)
T ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHhhhc-----cCCCChhHHHHHHHHhHHHHhccchHH
Confidence            999999986544222222223444556677777888 77755433221     123455666777789999999999999


Q ss_pred             HHHHHHHHHH
Q psy875          250 LEQIKTELKS  259 (480)
Q Consensus       250 A~~~~~~~~~  259 (480)
                      |..+++....
T Consensus       186 A~~~F~qia~  195 (221)
T COG4649         186 AKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHHc
Confidence            9999987654

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.56  E-value=1.5  Score=26.98  Aligned_cols=25  Identities=16%  Similarity=0.306  Sum_probs=18.1

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      ..||.+|.++|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4577777777777777777777663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4014|consensus

Probab=88.47  E-value=13  Score=30.93  Aligned_cols=116  Identities=15%  Similarity=0.134  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhcccccccHHHHHHHH----
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD-------NLDSACSELHTVLSSDLCKDLASCYISL----  158 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~-------~~~~A~~~~~~~l~~~~~~~~~~~~~~l----  158 (480)
                      ++...|++++..|-..        ....+..++|.+...-.       +.++|.+|+.++......    .+.++|    
T Consensus        87 ~~l~~a~r~~~~aC~~--------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~----~aCf~LS~m~  154 (248)
T KOG4014|consen   87 ASLSKAIRPMKIACDA--------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG----EACFLLSTMY  154 (248)
T ss_pred             cCHHHHHHHHHHHhcc--------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc----hHHHHHHHHH
Confidence            6788888888888763        12445566777665432       478999999988754432    222222    


Q ss_pred             --------------------HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC---CchHHHHHHHH
Q psy875          159 --------------------AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE---KPFELVVSTHE  215 (480)
Q Consensus       159 --------------------a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A~~~~~  215 (480)
                                          +..+.-.++.++|.++.-+|-++      ..+.+..|+++.|..-.   ++-++|..+-.
T Consensus       155 ~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~  228 (248)
T KOG4014|consen  155 MGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL------DIPQACANVSRMYKLGDGVPKDEDQAEKYKD  228 (248)
T ss_pred             hccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc------CChHHHhhHHHHHHccCCCCccHHHHHHHHH
Confidence                                23334446778888887777665      23455667777775421   22678888888


Q ss_pred             HHHHHHHH
Q psy875          216 KALDLARQ  223 (480)
Q Consensus       216 ~al~~~~~  223 (480)
                      +|.++.++
T Consensus       229 rA~e~~~e  236 (248)
T KOG4014|consen  229 RAKEIMEE  236 (248)
T ss_pred             HHHHHHHH
Confidence            88876543

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.14  E-value=19  Score=32.38  Aligned_cols=130  Identities=12%  Similarity=0.139  Sum_probs=87.3

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhh
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDN  165 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~  165 (480)
                      +.-++-++-+.++++-.+..+.....+.+..++|..|.+.++.+.+.+.+.+.+.....    -++..+-..||.+|..+
T Consensus        89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence            44566677788888776666666778899999999999999999999998866643322    34456677889999888


Q ss_pred             ccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          166 KQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      .=.++.++..+-.++--.+ +......+|.  |.......+ +.+|...+-..+..+.
T Consensus       169 ~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~--Gi~~m~~Rn-FkeAa~Ll~d~l~tF~  223 (412)
T COG5187         169 KVVEESLEVADDIIEKGGDWERRNRYKVYK--GIFKMMRRN-FKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHhhhhHHHHH--HHHHHHHHh-hHHHHHHHHHHhcccc
Confidence            7666666655555443222 2333344443  333344455 7888777777665543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=87.75  E-value=5.6  Score=30.58  Aligned_cols=61  Identities=11%  Similarity=0.147  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc---------hHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875           79 GEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD---------KLIRTVMRSIKKLYKKHDNLDSACSELH  140 (480)
Q Consensus        79 ~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~---------~~~~~~~~~l~~~y~~~~~~~~A~~~~~  140 (480)
                      ..+|.. ..+.+++-.++-+|++|+.+..+....         ........|||..++.+|+.+=.++|++
T Consensus         5 tllAd~-a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLq   74 (140)
T PF10952_consen    5 TLLADQ-AFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQ   74 (140)
T ss_pred             HHHHHH-HhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHH
Confidence            455666 444478888888888888766554211         1112234577777777777777777777

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.68  E-value=0.6  Score=24.87  Aligned_cols=23  Identities=13%  Similarity=0.118  Sum_probs=15.6

Q ss_pred             HHHHHHHHHhccccHHHHHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFN   61 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~   61 (480)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45667777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK10941 hypothetical protein; Provisional

Probab=87.59  E-value=7.3  Score=35.22  Aligned_cols=78  Identities=15%  Similarity=0.099  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      .+...-+.+...++-.+|...++++.|+.+.+..+.+    .|+...-+...|.+ +.++|.+..|..-++.-++..+..
T Consensus       174 a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----~P~dp~e~RDRGll-~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        174 ADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQF----DPEDPYEIRDRGLI-YAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHhCCCc
Confidence            3344567888999999999999999999999999999    55555556678999 667799999999999988887755


Q ss_pred             CCc
Q psy875          110 KDD  112 (480)
Q Consensus       110 ~~~  112 (480)
                      ++.
T Consensus       249 p~a  251 (269)
T PRK10941        249 PIS  251 (269)
T ss_pred             hhH
Confidence            443

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=87.37  E-value=12  Score=29.30  Aligned_cols=82  Identities=10%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHhhhcCC---CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875           92 FEIVQSTHEKALDLARQNK---DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus        92 ~~~A~~~~~kAl~~~~~~~---~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~  168 (480)
                      -..-...+++++..+....   ++.....++...+.    .-.  .+.+.|+......-....+..|...|..+...|++
T Consensus        42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~  115 (126)
T PF08311_consen   42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF  115 (126)
T ss_dssp             CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H
T ss_pred             hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH
Confidence            3444567777776664432   23333333333333    222  77777776655455566778888899999999999


Q ss_pred             HHHHHHHHHHH
Q psy875          169 NLAVDYFNKEL  179 (480)
Q Consensus       169 ~~A~~~~~~al  179 (480)
                      ++|.+.|++++
T Consensus       116 ~~A~~I~~~Gi  126 (126)
T PF08311_consen  116 KKADEIYQLGI  126 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhC
Confidence            99999888765

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.30  E-value=1.4  Score=31.02  Aligned_cols=48  Identities=15%  Similarity=0.035  Sum_probs=38.9

Q ss_pred             chHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy875          337 ESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ  407 (480)
Q Consensus       337 ~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~  407 (480)
                      ...+..|..+|+.++++.+++.+ .+                      ...++..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----------------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP----------------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc----------------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            45677899999999999998765 22                      23458999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1914|consensus

Probab=87.29  E-value=32  Score=33.99  Aligned_cols=202  Identities=10%  Similarity=0.087  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHhcccc-------HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhhh
Q psy875           38 SCYISLAQTYKDNKQ-------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE---KSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~---~~~~~A~~~~~kAl~~~~  107 (480)
                      ......+.++...|+       -+++.++|+++++...+.   ....|+.++.. ....   ..++....++++++.+..
T Consensus       287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~---~~~Ly~~~a~~-eE~~~~~n~~~~~~~~~~~ll~~~~  362 (656)
T KOG1914|consen  287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE---NKLLYFALADY-EESRYDDNKEKKVHEIYNKLLKIED  362 (656)
T ss_pred             HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh-HHHhcccchhhhhHHHHHHHHhhhc
Confidence            333444445555554       456666666666552111   12222333222 2111   236677778888886654


Q ss_pred             cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH-HHHHhhccHHHHHHHHHHHHhhhhcCc
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA-QTYKDNKQYNLAVDYFNKELRLHARNF  186 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la-~~y~~~~~~~~A~~~~~~al~~~~~~~  186 (480)
                      ...     ..++.++-..-.+..-...|...|.++-+....+.  .++..-| .-|...+++.-|...|+-.++...+.+
T Consensus       363 ~~~-----tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p  435 (656)
T KOG1914|consen  363 IDL-----TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSP  435 (656)
T ss_pred             cCC-----ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCh
Confidence            322     22344445555566667788888888875544332  3333333 235567999999999999998876654


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      ... ..   ....+...++ -..|...|++++..   .-.......++..+-.+-..-|+...+.+.-++-.
T Consensus       436 ~yv-~~---YldfL~~lNd-d~N~R~LFEr~l~s---~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  436 EYV-LK---YLDFLSHLND-DNNARALFERVLTS---VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HHH-HH---HHHHHHHhCc-chhHHHHHHHHHhc---cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            322 22   2344556777 67888899888764   22334445677777777788888877776665543

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=86.73  E-value=9.2  Score=37.73  Aligned_cols=71  Identities=11%  Similarity=0.192  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy875          168 YNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKK  239 (480)
Q Consensus       168 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  239 (480)
                      -..+++.|.+|+...+. -......-|..+|..|++.++ |.+|+.++-+|-...+..+....-.++|..+-+
T Consensus       295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~-~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfle  366 (618)
T PF05053_consen  295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKR-YREALRSWAEAADVIRKYNYSREDEEIYKEFLE  366 (618)
T ss_dssp             S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHH-HHHHHHHHHHHHHHHHHcccCccHHHHHHHHHH
Confidence            34567778887776554 223345567778888888888 999999888888777776655555555554443

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.61  E-value=18  Score=32.78  Aligned_cols=125  Identities=12%  Similarity=0.011  Sum_probs=76.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH-HhhhhcCcHHHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE-LRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~l~~~  199 (480)
                      ..+.-....|++.+|...|..++...+..  ..+...++.+|...|+.+.|...+... .+.    ..........--..
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~a~i~l  212 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQAQIEL  212 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHHHHHHH
Confidence            44566778899999999999998776554  467788999999999999998877552 111    11111111111112


Q ss_pred             HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          200 YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      +.+... ..+... ++      ++....+.-..+-..++..+...|+.+.|.+.+-...+
T Consensus       213 l~qaa~-~~~~~~-l~------~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         213 LEQAAA-TPEIQD-LQ------RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHhc-CCCHHH-HH------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            222222 111111 11      11122344455667899999999999999988765544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.19  E-value=4.8  Score=38.54  Aligned_cols=65  Identities=14%  Similarity=0.058  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccc------cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDL------CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      +...|..++.-+|+|..|++.++-.--...      .+-....++.+|-+|+.+++|.+|+..|...+-..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi  194 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI  194 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344777889999999999999873211111      12225678889999999999999999999887653

>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.93  E-value=19  Score=33.18  Aligned_cols=50  Identities=8%  Similarity=0.015  Sum_probs=26.6

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875           59 YFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK  110 (480)
Q Consensus        59 ~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~  110 (480)
                      .|+++.+. .+........-.+-|.+|+.. ++|.+....+..|-...++..
T Consensus        43 ~y~Q~~q~-~kk~~~~il~~L~~Gl~a~~~-~dya~S~~~ldAae~~~Kqqq   92 (449)
T COG3014          43 AYEQSKQF-TKKKKNALLWDLQNGLSALYA-RDYATSLGVLDAAEQRFKQQQ   92 (449)
T ss_pred             HHHHHHHh-hhhhhHHHHHhhhhhHHHHHh-hhHHHhhhHHHHHHHHHhhhh
Confidence            44555554 222233222223347775555 788888777766665554433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.77  E-value=12  Score=35.60  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHhccccc------------ccH----HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc
Q psy875          123 KKLYKKHDNLDSACSELHTVLSSDLC------------KDL----ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF  186 (480)
Q Consensus       123 ~~~y~~~~~~~~A~~~~~~~l~~~~~------------~~~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~  186 (480)
                      |..++++++|..|.--|..+|+...+            .++    ..+-..|..+|..+++.+-|+.+..+++-+    .
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----n  258 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----N  258 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----C
Confidence            44455556666665555544432211            111    334556899999999999999999999988    5


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                      |.....+..-|.++..+.+ |.+|...+.-|.-++--
T Consensus       259 P~~frnHLrqAavfR~LeR-y~eAarSamia~ymywl  294 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLER-YSEAARSAMIADYMYWL  294 (569)
T ss_pred             cchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            6666677788888988999 99988877666554433

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.59  E-value=27  Score=31.48  Aligned_cols=149  Identities=11%  Similarity=-0.023  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      -+.+....++.=+....+.|++..|-+...-.++.+  ........ ...++..+....-..-.+-....++|++..+..
T Consensus         5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~   83 (260)
T PF04190_consen    5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKFG   83 (260)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccC
Confidence            455667778888888888999998888777777765  22222221 224555552222112223457778888877545


Q ss_pred             CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHH-----hcc---------cccccHHHHHH-HHHHHHHhhccHHHHHHH
Q psy875          110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTV-----LSS---------DLCKDLASCYI-SLAQTYKDNKQYNLAVDY  174 (480)
Q Consensus       110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~-----l~~---------~~~~~~~~~~~-~la~~y~~~~~~~~A~~~  174 (480)
                      ..+..-...+..+|..|.+.|++.+|..+|-..     ...         ...+.-...+. ..-.-|...++...|...
T Consensus        84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~  163 (260)
T PF04190_consen   84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANEL  163 (260)
T ss_dssp             S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHH
Confidence            555666778899999999999999999998611     100         00011122232 334556777888888887


Q ss_pred             HHHHHhh
Q psy875          175 FNKELRL  181 (480)
Q Consensus       175 ~~~al~~  181 (480)
                      +..-.+.
T Consensus       164 ~~~f~~~  170 (260)
T PF04190_consen  164 FDTFTSK  170 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665443

; PDB: 3LKU_E 2WPV_G.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.05  E-value=5.4  Score=38.19  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhh-----hhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRL-----HARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK  225 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~  225 (480)
                      .+...|.+++.-+|+|..|++.++- +++     ....+.-...+++.+|-+|.-+++ |.+|+..|...+-...+..
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRR-YADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence            3556678999999999999988754 222     223456667889999999999999 9999999999987655443

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.00  E-value=11  Score=26.38  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             HhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          202 LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       202 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                      ..|+ |++|+..|..|++.+....++.....+...+.         .-|.+++.++..+...+.
T Consensus        18 ~~gn-y~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~---------~~a~~yl~RAE~Lk~~l~   71 (75)
T cd02680          18 EKGN-AEEAIELYTEAVELCINTSNETMDQALQTKLK---------QLARQALDRAEALKESMS   71 (75)
T ss_pred             Hhhh-HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH---------HHHHHHHHHHHHHHHHhc
Confidence            4567 88999999888887665433322222222211         124567777777776654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes

Probab=84.98  E-value=37  Score=32.47  Aligned_cols=38  Identities=16%  Similarity=0.178  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHh---------CCchHHHHHHHHHHHHHHHHcCC
Q psy875          188 EAVKTLGEIGDLYELQ---------EKPFELVVSTHEKALDLARQNKD  226 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~---------~~~~~~A~~~~~~al~~~~~~~~  226 (480)
                      ....+++.+|.+|.+.         +. ...++.+|+..++...+.+.
T Consensus       298 ~~l~a~f~~arl~~K~~~~~~~~~~~~-l~~sl~~y~~vv~y~~~~~~  344 (371)
T PF12309_consen  298 PYLYAYFHIARLYSKLITSDPKEQLEN-LEKSLEYYKWVVDYCEKHPE  344 (371)
T ss_pred             HHHHHHHHHHHHHccccCCChHHHHHH-HHHHHHHHHHHHHHHHhChh
Confidence            4556666666666544         45 66677777776666665554

Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=84.90  E-value=27  Score=30.92  Aligned_cols=54  Identities=15%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHH
Q psy875          208 ELVVSTHEKALDLARQ--NKDDKLIRTVMRSMKKLY-KKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       208 ~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ++|...|++|+.++..  .+..|.......+.+.+| .-+|+.++|.+..+++..-.
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a  199 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA  199 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            7899999999999988  344555555555555555 67999999999999887644

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=84.62  E-value=8.8  Score=33.03  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             HHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc--CCHHHHHHHHhcC-CCCCCC-
Q psy875          339 ITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR--GNLTLVQSLLKQG-HPVKVQ-  414 (480)
Q Consensus       339 ~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~--~~~~~~~~ll~~g-~~~~~~-  414 (480)
                      .+..+...+..+++-+|+.+- ++..++-.            .-+.+.--+.++...  .+..++++++.+| +++|.+ 
T Consensus       182 Am~~si~~~K~dva~~lls~f-~ft~~dv~------------~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F  248 (284)
T PF06128_consen  182 AMWLSIGNAKEDVALYLLSKF-NFTKQDVA------------SMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKF  248 (284)
T ss_pred             HHHHHhcccHHHHHHHHHhhc-ceecchhh------------hcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhh
Confidence            444455556667888887652 22211110            011133345555543  4578999999998 467643 


Q ss_pred             --CCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          415 --DSAGWLPLHEAANHGHTDIVQALVSAGADP  444 (480)
Q Consensus       415 --~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  444 (480)
                        -..|.|-|.-|...+..+++..|+++|+-.
T Consensus       249 ~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  249 QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence              457999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.14  E-value=2.5  Score=26.00  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDL  147 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~  147 (480)
                      ..++..|..+|+++.|.+.+++.+...+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~   30 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEGD   30 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            4789999999999999999999885443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.91  E-value=9.1  Score=34.46  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhhccCC
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS-LEEKLDLNS  268 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-l~~~~~~~~  268 (480)
                      ...+...+..|...|. +.+|+.+.++++.+      .+.....+..|..++..+|+--+|...|+++.+ +...++..-
T Consensus       279 ~kllgkva~~yle~g~-~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         279 MKLLGKVARAYLEAGK-PNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHHcCC-hHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            4455667888999999 99999999999988      677788889999999999999999988888764 555555543


Q ss_pred             C
Q psy875          269 S  269 (480)
Q Consensus       269 ~  269 (480)
                      +
T Consensus       352 d  352 (361)
T COG3947         352 D  352 (361)
T ss_pred             c
Confidence            3

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=83.84  E-value=43  Score=32.39  Aligned_cols=52  Identities=12%  Similarity=0.114  Sum_probs=42.4

Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy875          159 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK  216 (480)
Q Consensus       159 a~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  216 (480)
                      |...+.+|+|.++.-|-.-..++    .| .+.++..+|.+....+. |++|..++.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~i----aP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKI----AP-SPQAYRLLGLCLMENKR-YQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHh----CC-cHHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence            55667889999998888777777    33 56788999999999999 9999988865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.61  E-value=31  Score=33.87  Aligned_cols=77  Identities=17%  Similarity=0.145  Sum_probs=38.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~  199 (480)
                      ..++..+.++|-++.|+.+-+.       +   ...+.   +..+.|+.+.|.+..++.      +   ....|..||..
T Consensus       299 ~~i~~fL~~~G~~e~AL~~~~D-------~---~~rFe---LAl~lg~L~~A~~~a~~~------~---~~~~W~~Lg~~  356 (443)
T PF04053_consen  299 QSIARFLEKKGYPELALQFVTD-------P---DHRFE---LALQLGNLDIALEIAKEL------D---DPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHHHSS--------H---HHHHH---HHHHCT-HHHHHHHCCCC------S---THHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHhhcCC-------h---HHHhH---HHHhcCCHHHHHHHHHhc------C---cHHHHHHHHHH
Confidence            3455555666666666554432       1   11111   223556655555443211      1   12356677777


Q ss_pred             HHHhCCchHHHHHHHHHHHH
Q psy875          200 YELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       200 ~~~~~~~~~~A~~~~~~al~  219 (480)
                      ...+|+ ++-|.++|+++-+
T Consensus       357 AL~~g~-~~lAe~c~~k~~d  375 (443)
T PF04053_consen  357 ALRQGN-IELAEECYQKAKD  375 (443)
T ss_dssp             HHHTTB-HHHHHHHHHHCT-
T ss_pred             HHHcCC-HHHHHHHHHhhcC
Confidence            777777 7777777766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=83.60  E-value=46  Score=32.48  Aligned_cols=171  Identities=13%  Similarity=0.019  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHhccccc-
Q psy875           77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL-------DSACSELHTVLSSDLC-  148 (480)
Q Consensus        77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~-------~~A~~~~~~~l~~~~~-  148 (480)
                      .+..+|..+++. ++|+.|...|+.+.+-+...+-....+.++-..|......+..       +....+++.+...... 
T Consensus       210 q~R~LAD~aFml-~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~  288 (414)
T PF12739_consen  210 QMRRLADLAFML-RDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS  288 (414)
T ss_pred             HHHHHHHHHHHH-ccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence            456689995555 9999999999999987765555667777777777777766633       2444455544322111 


Q ss_pred             --------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH---HHHHHHHHHHHH--HHhCCchHHHHHHHH
Q psy875          149 --------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE---AVKTLGEIGDLY--ELQEKPFELVVSTHE  215 (480)
Q Consensus       149 --------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~--~~~~~~~~~A~~~~~  215 (480)
                              .....+....+.++...+.|.+|...+-+.....-.....   .+..+..+|.+|  ..... ...-...++
T Consensus       289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~-~~~~~~r~R  367 (414)
T PF12739_consen  289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNR-PSPGLTRFR  367 (414)
T ss_pred             hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCC-CCccchhhH
Confidence                    1224566667788888898888877766655431111111   344444555555  22211 000000011


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          216 KALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       216 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                                   ....-+..-|.-|.+.|+...|...|..+...-+
T Consensus       368 -------------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  368 -------------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence                         1122223456788999999999999999988765

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0890|consensus

Probab=83.30  E-value=72  Score=37.72  Aligned_cols=163  Identities=13%  Similarity=0.091  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875           31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK  110 (480)
Q Consensus        31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~  110 (480)
                      +....++.+|...|.+....|+++.|..+.-+|.+.    .  ...++...|.. ..+.|+-..|+..+++.+.......
T Consensus      1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----r--~~~i~~E~AK~-lW~~gd~~~Al~~Lq~~l~~~~~~~ 1736 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----R--LPEIVLERAKL-LWQTGDELNALSVLQEILSKNFPDL 1736 (2382)
T ss_pred             cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----c--cchHHHHHHHH-HHhhccHHHHHHHHHHHHHhhcccc
Confidence            556788999999999999999999999999998877    2  45566778888 4444999999999999996654331


Q ss_pred             -Cc----------hHHHHHHHHHHHHHHhcCChH--HHHHHHHHHhcccccccHHHHHHHHH------------HHHHhh
Q psy875          111 -DD----------KLIRTVMRSIKKLYKKHDNLD--SACSELHTVLSSDLCKDLASCYISLA------------QTYKDN  165 (480)
Q Consensus       111 -~~----------~~~~~~~~~l~~~y~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~~~la------------~~y~~~  165 (480)
                       .+          .....+...++......++++  .-+++|+.+.++.+...  ..|+.+|            ..+.+.
T Consensus      1737 ~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe--~~hy~l~~yy~kll~~~~~~~~E~~ 1814 (2382)
T KOG0890|consen 1737 HTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE--DKHYHLGKYYDKLLEDYKSNKMEKS 1814 (2382)
T ss_pred             cCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc--CceeeHHHHHHHHhhhhhccccccc
Confidence             11          111234445555555566533  45667777777665322  2233333            223344


Q ss_pred             ccHHH---HHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHH
Q psy875          166 KQYNL---AVDYFNKELRLHAR----NFPEAVKTLGEIGDLYEL  202 (480)
Q Consensus       166 ~~~~~---A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~  202 (480)
                      |++..   |+.+|.+++..-..    .-|.....|..+|.....
T Consensus      1815 g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1815 GRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred             ccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence            56665   66666777765222    244555666666665554

>PRK10941 hypothetical protein; Provisional

Probab=83.29  E-value=8.6  Score=34.78  Aligned_cols=64  Identities=14%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .....++-.+|.+.++++.|+.+.+..+.+.+++    +.-+...|.+|.++|. +..|..-++..++.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d----p~e~RDRGll~~qL~c-~~~A~~DL~~fl~~  244 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPED----PYEIRDRGLIYAQLDC-EHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC-cHHHHHHHHHHHHh
Confidence            6678889999999999999999999999985443    4456678999999999 99999888777654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.24  E-value=13  Score=25.96  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH   67 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   67 (480)
                      ..+..+...|.-+-..|++++|+.+|+++++++
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L   36 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVL   36 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            346667778888888999999999999999986

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2908|consensus

Probab=82.48  E-value=41  Score=31.14  Aligned_cols=150  Identities=11%  Similarity=0.080  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHH-----------------HHHHHhhccHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISL-----------------AQTYKDNKQYNLAV  172 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~l-----------------a~~y~~~~~~~~A~  172 (480)
                      ++.++..+.++..+|.+.-  ++..|+.-|-+...-...+.....|.|.                 -.+..+.++.++|+
T Consensus        16 ~~~l~~ew~~leeLy~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al   95 (380)
T KOG2908|consen   16 NPSLAAEWDRLEELYEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEAL   95 (380)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHH


Q ss_pred             HHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHcCChH
Q psy875          173 DYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL--IRTVMRSMKKLYKKHDKFT  248 (480)
Q Consensus       173 ~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~  248 (480)
                      +++++..+-...  .+.....+...+|.++...|+ .+++.+.+.+.-+........+.  ....|..-+++|...|++.
T Consensus        96 ~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~D-Lk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a  174 (380)
T KOG2908|consen   96 EFLEKIIEKLKEYKEPDAVIYILTEIARLKLEIND-LKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFA  174 (380)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHH


Q ss_pred             HHHHHHHHHHHHHH
Q psy875          249 ELEQIKTELKSLEE  262 (480)
Q Consensus       249 ~A~~~~~~~~~l~~  262 (480)
                      .+....-.+....+
T Consensus       175 ~yYr~~L~YL~~~d  188 (380)
T KOG2908|consen  175 SYYRHALLYLGCSD  188 (380)
T ss_pred             HHHHHHHHHhcccc

>KOG3364|consensus

Probab=81.93  E-value=9.7  Score=30.01  Aligned_cols=66  Identities=6%  Similarity=-0.046  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEK--PFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ..+.+++++++....+  +.++.+..++..++    ...+.......+.|+--+.+.|+|+++.+|.+...+
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            4556677777776654  23445555555443    345566677888999999999999999999987765

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=81.28  E-value=53  Score=31.58  Aligned_cols=72  Identities=14%  Similarity=0.064  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHh
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY-ELQEKSFEIVQSTHEKALDL  105 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y-~~~~~~~~~A~~~~~kAl~~  105 (480)
                      .+...+.-....+...++.++|..|.+.+.....- ...... ...+..+...| ....-++.+|.+++++.+..
T Consensus       126 p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  126 PYEVFGDREWRRAKELFNRYDYGAAARILEELLRR-LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            34444556667778888999999999999998774 121111 34455554443 33447899999999887765

>KOG2561|consensus

Probab=81.22  E-value=20  Score=34.27  Aligned_cols=117  Identities=9%  Similarity=-0.091  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC-------cHHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN-------FPEAVKTLGEIGDLYELQEKPF---ELVVSTHEKALDLA  221 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~---~~A~~~~~~al~~~  221 (480)
                      +..+...|.+....+.|++|+..+..|-+.+..-       ....+.....+-++|+.+++ .   .+|..-+..+-+-+
T Consensus       163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkn-itcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKN-ITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcc-cccCChHHHHHHHHHHhh
Confidence            4456677889999999999999888877664431       22334455567788888765 3   34544444443222


Q ss_pred             H-------------HcCCcH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccCCC
Q psy875          222 R-------------QNKDDK---LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSS  269 (480)
Q Consensus       222 ~-------------~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~  269 (480)
                      .             +.+..|   ...+.+..-|.+.+.+|+-++|+++++.+...-.++...+.
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~  305 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDE  305 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccch
Confidence            1             112223   34455567788999999999999999999887766655443

>KOG2561|consensus

Probab=81.11  E-value=48  Score=31.88  Aligned_cols=109  Identities=11%  Similarity=-0.043  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hc------cCchHHHHHHHHHHHHHHh--hcc-------HHHHHHH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-AR------NFPEAVKTLGEIGDLYELQ--EKS-------FEIVQST   98 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~------~~~~~~~~~~~lg~~y~~~--~~~-------~~~A~~~   98 (480)
                      .++..++..|.+......|++|+.++..|-+.| ..      ...+.+..-..|-.+|+..  ...       ...|.+.
T Consensus       161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg  240 (568)
T KOG2561|consen  161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG  240 (568)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence            456678889999999999999999999998887 11      1112222222334443321  112       2333344


Q ss_pred             HHHHHH-----hh-hcCCCc---hHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q psy875           99 HEKALD-----LA-RQNKDD---KLIRTVMRSIKKLYKKHDNLDSACSELHTVL  143 (480)
Q Consensus        99 ~~kAl~-----~~-~~~~~~---~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l  143 (480)
                      |.++.-     +. -+.+..   ..+...+..-|.+.+.+|+-++|.++++.+.
T Consensus       241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~  294 (568)
T KOG2561|consen  241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH  294 (568)
T ss_pred             hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            444331     00 011122   3344556678899999999999999998554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.01  E-value=25  Score=31.87  Aligned_cols=62  Identities=15%  Similarity=0.104  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh
Q psy875           95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD  164 (480)
Q Consensus        95 A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~  164 (480)
                      |+.||.+|..+.+..      +..|+.||.++...|+.-.|+.+|-+++.... | ...+..||..++.+
T Consensus         1 A~~~Y~~A~~l~P~~------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-P-f~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSN------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-P-FPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTB------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCC------CCcccchhhhhccccchHHHHHHHHHHHhcCC-C-cHHHHHHHHHHHHH
Confidence            678999999997765      56788999999999999999999999995542 2 35667788777776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=80.89  E-value=24  Score=30.99  Aligned_cols=102  Identities=11%  Similarity=0.020  Sum_probs=65.2

Q ss_pred             HhhccHHHHHHHHHHHHhhhhc--------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-CcHHHHHH
Q psy875          163 KDNKQYNLAVDYFNKELRLHAR--------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-DDKLIRTV  233 (480)
Q Consensus       163 ~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~  233 (480)
                      ++.|+|+.|++...-+++....        .+...+.-....+......|++++-+  +......+...-. ........
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhcCCCChHHHHHH
Confidence            5678899999988888876222        13334455555666666777743332  2333333433222 33455677


Q ss_pred             HHHHHHHHH---------HcCChHHHHHHHHHHHHHHHhhcc
Q psy875          234 MRSMKKLYK---------KHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       234 ~~~l~~~~~---------~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      +..+|..+.         ..++...|+.+++++..+..+++-
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV  213 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV  213 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence            778888773         556888999999999998876654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=80.76  E-value=6.2  Score=42.30  Aligned_cols=107  Identities=11%  Similarity=-0.022  Sum_probs=71.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccH-HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDL-ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIG  197 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~  197 (480)
                      ...+.+..-+.|++|+..|++.-...|.... ..+...+|.+..++-.-..--+-|.+|+..+..  ..+..+.=|...|
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA  559 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence            4456777788999999999988877766332 456677777776542221112344444444333  3344555677888


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          198 DLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                      .+|..+|. |++-++.|.-|++.....+.-+
T Consensus       560 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        560 LVYQRLGE-YNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHhhh-HHHHHHHHHHHHHhcCCCCccH
Confidence            89999999 9999999999987665554433

>KOG4521|consensus

Probab=80.76  E-value=54  Score=35.74  Aligned_cols=123  Identities=10%  Similarity=0.040  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccc-------------------------cH--HHHHHHHHHHHHhhccHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-------------------------DL--ASCYISLAQTYKDNKQYNL  170 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-------------------------~~--~~~~~~la~~y~~~~~~~~  170 (480)
                      .-..+|..|...|+..+|+.+|.++.......                         ..  ...|...-+++.+-+-.+.
T Consensus       922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen  922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred             HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence            34578899999999999999999776433221                         11  1112222344444455566


Q ss_pred             HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q psy875          171 AVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFT  248 (480)
Q Consensus       171 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  248 (480)
                      +.....+|++..+.+.+..+.++.++=.-+..+|. +-+|...       .-+..+.......++.+..+....|..+
T Consensus      1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh-~~qAy~a-------i~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH-WFQAYKA-------ILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred             HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh-HHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence            66666666666666667777777777777777777 6555443       3344555666777777777777777654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.52  E-value=17  Score=25.41  Aligned_cols=27  Identities=15%  Similarity=0.052  Sum_probs=17.2

Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      ..|.-+...|+ +++|+.+|+++++...
T Consensus        11 ~~AVe~D~~gr-~~eAi~~Y~~aIe~L~   37 (75)
T cd02682          11 INAVKAEKEGN-AEDAITNYKKAIEVLS   37 (75)
T ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence            33444456677 7777777777776543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0890|consensus

Probab=80.49  E-value=70  Score=37.82  Aligned_cols=127  Identities=11%  Similarity=0.019  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHH
Q psy875           92 FEIVQSTHEKALDLARQN-KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNL  170 (480)
Q Consensus        92 ~~~A~~~~~kAl~~~~~~-~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~  170 (480)
                      ..+-+-.+++++-..... +-...++.+|.+.|.+-+..|+++.|-.+.-++.+..    ...++...|...-..|+-..
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----~~~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----LPEIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----cchHHHHHHHHHHhhccHHH
Confidence            455555677776443333 4457789999999999999999999999998887554    44778899999999999999


Q ss_pred             HHHHHHHHHhhhhcC-------------cHHHHHHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHHH
Q psy875          171 AVDYFNKELRLHARN-------------FPEAVKTLGEIGDLYELQEKPF--ELVVSTHEKALDLARQ  223 (480)
Q Consensus       171 A~~~~~~al~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~--~~A~~~~~~al~~~~~  223 (480)
                      |+.++++.++....+             ......+.+.++......++ +  ..-+.+|.++.++..+
T Consensus      1721 Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred             HHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHccc
Confidence            999999999764331             11112344455555555555 4  3456778888777553

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=80.26  E-value=6.4  Score=34.73  Aligned_cols=81  Identities=15%  Similarity=0.005  Sum_probs=59.4

Q ss_pred             ccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875          166 KQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  243 (480)
                      -..+.|.+++.+|+-..++  +......+....+..|+..++ |+.|..||.+|+.......-+....+.-..|-....+
T Consensus        53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~-Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kk  131 (368)
T COG5091          53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKD-YELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKK  131 (368)
T ss_pred             cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHH-HHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHh
Confidence            4567889999999887665  555566677777888888899 9999999999998866555555555555566666666


Q ss_pred             cCCh
Q psy875          244 HDKF  247 (480)
Q Consensus       244 ~g~~  247 (480)
                      +++-
T Consensus       132 Q~~~  135 (368)
T COG5091         132 QKDS  135 (368)
T ss_pred             hccc
Confidence            6554

>KOG0687|consensus

Probab=80.09  E-value=49  Score=30.50  Aligned_cols=128  Identities=13%  Similarity=0.096  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccH
Q psy875           93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus        93 ~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~  168 (480)
                      ++-++-+.++++-+.+.........+..++|..|.+.|+-+.|++.+.+.....    ..-++..+...+|..|.+..=.
T Consensus        81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV  160 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV  160 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence            344555666666555555567778899999999999999999999988655332    2244566677788888877544


Q ss_pred             HHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          169 NLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                      .+.++-.+..++--.+ +......+|.  |.......+ +.+|...|-.++..+..
T Consensus       161 ~~~iekak~liE~GgDWeRrNRlKvY~--Gly~msvR~-Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  161 TESIEKAKSLIEEGGDWERRNRLKVYQ--GLYCMSVRN-FKEAADLFLDSVSTFTS  213 (393)
T ss_pred             HHHHHHHHHHHHhCCChhhhhhHHHHH--HHHHHHHHh-HHHHHHHHHHHcccccc
Confidence            4443333333322111 2333344443  333344455 88888888777765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	480
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-18
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-18
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-17
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-16
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-16
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-15
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-15
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-15
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-14
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-14
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-12
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-12
1uoh_A	226	Human Gankyrin Length = 226		1e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-11
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-10
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-10
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		5e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-09
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-09
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		4e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		7e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		6e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		6e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-08
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		5e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		5e-06
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		6e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		4e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		7e-04

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V  +D  G+ PLH AA  GH +IV+ L+ AGAD 
Sbjct: 47  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K +D  G+ PLH AA  GH +IV+ L+ AGA+V+
Sbjct: 107 NAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 140

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V  +D  G+ PLH AA  GH +IV+ L+ AGAD 
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K +D  G+ PLH AA  GH +IV+ L+ AGA+V+
Sbjct: 95  NAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 128

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V  +D  G+ PLH AA  GH +IV+ L+ AGAD 
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K +D  G+ PLH AA  GH +IV+ L+ AGA+V+
Sbjct: 95  NAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 128

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           +G T LH+AA  G+  +V+ LLK G  V  +D+ GW PLH AA++GH +IV+ L+  GAD
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            N   QD+ G  PLH AA+ GH +IV+ L+  GA+V+
Sbjct: 106 VN--AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 14/100 (14%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQ------AL 437
           RGET LH+A+ +G++  V+ LL+ G    V+D AGW PLHEA NHGH  +V+      AL
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 438 VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           V+     ND         PLH+AA +GH DIV+ L+S GA
Sbjct: 69  VNTTGYQNDS--------PLHDAAKNGHVDIVKLLLSYGA 100

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            G T LH+AAA G L +V+ LLK G  V   DSAG  PLH AA  GH +IV+ L+  GAD
Sbjct: 38  NGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            N    D AGW PLH AA  G  +IV+ L+  GA+V+
Sbjct: 98  VN--AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH AA  G+  +V+ L+ +G  V  +DS G  PLH AA  GH +IV+ L+S GAD 
Sbjct: 37  GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K  DS G  PLH AA  GH +IV+ L+S GA+V+
Sbjct: 97  NAK--DSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           E   G+T LH+AA +G+L +V+ LLK G  V   D  G  PLH AA +GH +IV+ L+  
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           GAD N    D+ G+ PLH AA+ GH +IV+ L+  GA+V+
Sbjct: 103 GADVN--ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V  +DS G  PLH AA  GH +IV+ L+  GAD 
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    DS G+ PLH AA  GH +IV+ L+  GA+V+
Sbjct: 107 N--ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH AA  G+  +V+ LL +G     +DS G  PLH AA +GH +IV+ L+S GADP
Sbjct: 37  GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           N   +DS G  PLH AA +GH +IV+ L+S GA+
Sbjct: 97  N--AKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH AA  G+  +V+ L+ +G  V  +DS G  PLH AA +GH ++V+ L+S GAD 
Sbjct: 37  GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K  DS G  PLH AA +GH ++V+ L+S GA+V+
Sbjct: 97  NAK--DSDGRTPLHHAAENGHKEVVKLLISKGADVN 130

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+T LH+AA  G+  +V+ LL QG     +DS G  PLH AA +GH ++V+ L+S GADP
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           N K  DS G  PLH AA +GH ++V+ L+S GA+
Sbjct: 97  NAK--DSDGKTPLHLAAENGHKEVVKLLLSQGAD 128

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   D+ G  PLH AA+ GH +IV+ L+  GAD 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K  D  G  PLH AAN GH +IV+ L+  GA+V+
Sbjct: 107 NAK--DDNGITPLHLAANRGHLEIVEVLLKYGADVN 140

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   DS G  PLH AA+ GH ++V+ L+  GAD 
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    D  G+ PLH AAN GH +IV+ L+  GA+V+
Sbjct: 107 N--ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           E   G+T LH+AA  G+L +V+ LLK G  V   D +G  PLH AA  GH +IV+ L+  
Sbjct: 43  EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           GAD N    D+ G  PLH AA+ GH +IV+ L+  GA+V+
Sbjct: 103 GADVN--ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   D+ G  PLH AA++GH +IV+ L+  GAD 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K  D  G+ PLH AA  GH +IV+ L+  GA+V+
Sbjct: 107 NAK--DYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+    G+L +++ LLK    V   D +GW PLH AA  GH +IV+ L+  GAD 
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    D  G+ PLH AA  GH +IV+ L+  GA+V+
Sbjct: 107 N--AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LL+ G  V  +D  G  PLH AA +GH ++V+ L+ AGAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K  D  G  PLH AA +GH ++V+ L+ AGA+V+
Sbjct: 62  NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   D  G+ PLH AA  GH +IV+ L+  GAD 
Sbjct: 47  GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    D  G  PLH AA+ GH +IV+ L+  GA+V+
Sbjct: 107 N--AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA+ G+L +V+ LLK G  V   D  G  PLH AA  GH +IV+ L+  GAD 
Sbjct: 47  GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    D+ G  PLH AA +GH +IV+ L+  GA+V+
Sbjct: 107 N--AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AAA G+L +V+ LL+ G  V   D+ G  PLH AA+ GH +IV+ L+  GAD 
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K  D+ G  PL+ AA  GH +IV+ L+  GA+V+
Sbjct: 95  NAK--DATGITPLYLAAYWGHLEIVEVLLKHGADVN 128

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   D  G+ PLH AA  GH +IV+ L+  GAD 
Sbjct: 47  GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    DS G  PLH AA  G+ +IV+ L+  GA+V+
Sbjct: 107 N--AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LL+ G  V  +D  G  PLH AA +GH ++V+ L+ AGAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           N K  D  G  PLH AA +GH ++V+ L+ AGA
Sbjct: 62  NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           E   G T LH+AA  G+L +V+ LLK G  V   D AG  PL  AA  GH +IV+ L+  
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           GAD N    D  G  PLH AA  GH +IV+ L+  GA+V+
Sbjct: 103 GADVN--ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   D  G  PLH AA  GH +IV+ L+  GAD 
Sbjct: 47  GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    D+ G  PLH AA  GH +IV+ L+  GA+V+
Sbjct: 107 N--AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   D  G  PLH AA  GH +IV+ L+  GAD 
Sbjct: 47  GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    D+ G  PLH AA  GH +IV+ L+  GA+V+
Sbjct: 107 N--AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 31/126 (24%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH+AA+ G   +V++LL +G  V   +  G  PLH AA+    +I   L+  GA+P
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 445 NDK-------------------------------VQDSAGWLPLHEAANHGHTDIVQALV 473
           + K                               +QD+ G  PLH A +    +  + LV
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Query: 474 SAGAEV 479
           S GA +
Sbjct: 193 SQGASI 198

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 31/126 (24%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH+AA+ G   +V++LL +G  V   +  G  PLH AA+    +I   L+  GA+P
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 445 NDK-------------------------------VQDSAGWLPLHEAANHGHTDIVQALV 473
           + K                               +QD+ G  PLH A +    +  + LV
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
Query: 474 SAGAEV 479
           S GA +
Sbjct: 194 SQGASI 199

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
           TALH A + G+  +V+ LL+ G PV  +D AGW PLH AA+ G  +IV+AL+  GA  N 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             Q+  G  PLH AA+    +I   L+  GA
Sbjct: 102 VNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
           TALH A + G+  +V+ LL+ G PV  +D AGW PLH AA+ G  +IV+AL+  GA  N 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             Q+  G  PLH AA+    +I   L+  GA
Sbjct: 102 VNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           R  T LH AA    +++V+ LL+ G  V  +D  G +PLH A ++GH ++ + LV  GA 
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
            N  V D   + PLHEAA  G  +I + L+  GA+
Sbjct: 101 VN--VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           R  T LH AA    +++V+ LL+ G  V  +D  G +PLH A ++GH ++ + LV  GA 
Sbjct: 45  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
            N  V D   + PLHEAA  G  +I + L+  GA+
Sbjct: 105 VN--VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           R  T LH AA    +++V+ LL+ G  V  +D  G +PLH A ++GH ++ + LV  GA 
Sbjct: 43  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
            N  V D   + PLHEAA  G  +I + L+  GA+
Sbjct: 103 VN--VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG--HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
           R    L  AAARG++  V+ LL +   HP    +  G   L +    G T I   L+  G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTAL-QVMMFGSTAIALELLKQG 58
Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           A PN  VQD++G  P+H+AA  G  D ++ LV  GA+V+
Sbjct: 59  ASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V+ L+  G  V   D AG  PLH AA  GH +IV+ L+  GAD N    DS G  PLH A
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDSWGRTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
           A  GH +IV+ L+  GA+V+
Sbjct: 88  ATVGHLEIVEVLLEYGADVN 107

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 379 LLEKPRGETALHVAAARGNLTLVQSLLKQ--GHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
           LLE+ R    L  AAARG++  V+ LL +   HP    +  G   L +    G T I   
Sbjct: 2   LLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTAL-QVMMFGSTAIALE 59
Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           L+  GA PN  VQD++G  P+H+AA  G  D ++ LV  GA+V+
Sbjct: 60  LLKQGASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+ A  G++ +   L+K G  V      G+ PLH A+++G+  +V+ L+   AD 
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           N K +   G+ PLH+AA  GHTDIV  L+  GA
Sbjct: 338 NAKTK--LGYSPLHQAAQQGHTDIVTLLLKNGA 368

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           R  T LH+AA    + +VQ LL+ G  V  +D  G +PLH A ++GH ++ + L+  GA 
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
            N    D   + PLHEAA+    ++   L+S GA+
Sbjct: 117 VN--AMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V+ L+  G  V   D AG  PLH AA  GH +IV+ L+  GAD N   +D  G  PLH A
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARDIWGRTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
           A  GH +IV+ L+  GA+V+
Sbjct: 88  ATVGHLEIVEVLLEYGADVN 107

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V+ L+  G  V   D AG  PLH AA  GH +IV+ L+  GAD N    D  G  PLH A
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDIWGRTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
           A  GH +IV+ L+  GA+V+
Sbjct: 88  ATVGHLEIVEVLLEYGADVN 107

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V+ L+  G  V   D  G  PLH AA  GH +IV+ L+  GAD N   +D+ G  PLH A
Sbjct: 30  VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN--AEDNFGITPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
           A  GH +IV+ L+  GA+V+
Sbjct: 88  AIRGHLEIVEVLLKHGADVN 107

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V+ L+  G  V  +D  G  PL+ A  HGH +IV+ L+  GAD N    D+ G+ PLH A
Sbjct: 30  VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN--AVDAIGFTPLHLA 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
           A  GH +I + L+  GA+V+
Sbjct: 88  AFIGHLEIAEVLLKHGADVN 107

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TAL V    G+  +   LLKQG    VQD++G  P+H+AA  G  D ++ LV  GAD 
Sbjct: 42  GKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
           N    DS G LP+H A   GH+ +V  L
Sbjct: 101 N--ALDSTGSLPIHLAIREGHSSVVSFL 126

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH AA  G+   V+ LL +G  V  +   G  PLH AA +GH +IV+ L++ GAD 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N + +D  G  P H A  +GH +IV+ L + GA+V+
Sbjct: 69  NARSKD--GNTPEHLAKKNGHHEIVKLLDAKGADVN 102

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LHVAA  G   L+  LLK G     +++   +PLH A   GH  +V+ L+ + A P
Sbjct: 86  GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N K  D +G  PL  A + GH ++V  L+  GA ++
Sbjct: 146 NKK--DLSGNTPLIYACSGGHHELVALLLQHGASIN 179

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TAL V    G+  +   LLKQG    VQD++G  P+H+AA  G  D ++ LV  GAD 
Sbjct: 44  GKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
           N    DS G LP+H A   GH+ +V  L
Sbjct: 103 N--ALDSTGSLPIHLAIREGHSSVVSFL 128

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V+ L+  G  V  +D  G  PLH AA + H +IV+ L+  GAD N    D+ G  PLH  
Sbjct: 30  VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN--AIDAIGETPLHLV 87
Query: 461 ANHGHTDIVQALVSAGAEVS 480
           A +GH +IV+ L+  GA+V+
Sbjct: 88  AMYGHLEIVEVLLKHGADVN 107

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH A   G   +V+ L+ +G  + V +     PLH AA+HGH DIVQ L+   AD 
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    +  G +PLH A   G   + + LV+ GA VS
Sbjct: 99  N--AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH A   G   +V+ L+ +G  + V +     PLH AA+HGH DIVQ L+   AD 
Sbjct: 34  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    +  G +PLH A   G   + + LV+ GA VS
Sbjct: 94  N--AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH+AA  G+ +  + LL+ G     +      PLH AA+ GH +IV+ L+  GAD 
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N K  D      LH A  H H ++V+ L+  GA+V
Sbjct: 94  NAK--DMLKMTALHWATEHNHQEVVELLIKYGADV 126

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
           AA  G    V+ L+  G  V   D  G  PLH AA++ H +IV+ L+  GAD N    D+
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN--AHDN 78
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            G  PLH AA  GH +IV+ L+  GA+V+
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLKHGADVN 107

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPN 445
           T L  AA   +L  V+ L+K G  V  +D+ G   LH AA  GH ++VQ L+S G  D N
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
              QD  GW P+  A  + H D+V+ L+S G++++
Sbjct: 106 --CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
           A + G+   V  LL++G  +   +  G   LH+A    + D+V+ LV  GA+ N    D+
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP--DN 104
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            GW+PLH AA+ G+ DI + L+S GA V 
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVG 133

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           +G T LH+A  +    + Q L++ G  V+++D    +PLH AA+ G   +++ L   G  
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAE 478
             +  QD  GW PL  A   GH D    LV   GAE
Sbjct: 166 AVN-WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           +G T LH+A  +    + Q L++ G  V+++D    +PLH AA+ G   +++ L   G  
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAE 478
             +  QD  GW PL  A   GH D    LV   GAE
Sbjct: 166 AVN-WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           +G T LH+A  +    + Q L++ G  V+++D    +PLH AA+ G   +++ L   G  
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAE 478
             +  QD  GW PL  A   GH D    LV   GAE
Sbjct: 166 AVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
           LH AA RGNL+ ++  L     V   D AG   L+ A + GH DIV+ L +    PN ++
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT---QPNIEL 133
Query: 449 --QDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             Q+  G   LH AA  G+ DIVQ L++ GA
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TAL  A     L + + LL +G  V  +D +G  PL  +   G++++   L+  GA+ 
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           ND+  +  G  PL  A+ +G ++IV+ L+  GA++S
Sbjct: 128 NDR--NLEGETPLIVASKYGRSEIVKKLLELGADIS 161

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 396 GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL 455
           G   LVQ ++ +     + +  G   LH A   GHT+IV+ LV  G + N    DS GW 
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN--AADSDGWT 105
Query: 456 PLHEAANHGHTDIVQALVSAGAEV 479
           PLH AA+  +  + + LV +GA V
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 396 GNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL 455
           G   LVQ ++ +     + +  G   LH A   GHT+IV+ LV  G + N    DS GW 
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN--AADSDGWT 105
Query: 456 PLHEAANHGHTDIVQALVSAGAEV 479
           PLH AA+  +  + + LV +GA V
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAV 129

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 400 LVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458
           LVQ LL+ G  V  Q+   GW PLH A      DIV+ L+  GADP   ++   G  P  
Sbjct: 20  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFL 77
Query: 459 EAANHGHTDIVQALVSAGAEVS 480
            AA  G   +++  +S GA+V+
Sbjct: 78  LAAIAGSVKLLKLFLSKGADVN 99

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V    + G  PLH AA   H +IV+ L+  GAD 
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
           N   QD  G      + ++G+ D+ + L
Sbjct: 107 N--AQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           L EAA  G  D V+ L++ GAD N K +D  G+ PLH AA  GH +IV+ L+ AGA+V+
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 62

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN-- 445
           ++H  AA+G +  + + ++Q + +   D  G+ PL  AA HG   +V+ L+  GADP   
Sbjct: 22  SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            K ++SA    L  A + G+TDIV+ L+  G +V+
Sbjct: 82  GKGRESA----LSLACSKGYTDIVKMLLDCGVDVN 112

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 397 NLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWL 455
           ++ LVQ LL+ G  V  Q+   GW PLH A      DIV+ L+  GADP   ++   G  
Sbjct: 37  DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGAT 94
Query: 456 PLHEAANHGHTDIVQALVSAGAEVS 480
           P   AA  G   +++  +S GA+V+
Sbjct: 95  PFILAAIAGSVKLLKLFLSKGADVN 119

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN-- 445
           ++H  AA+G +  + + ++Q + +   D  G+ PL  AA HG   +V+ L+  GADP   
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            K ++SA    L  A + G+TDIV+ L+  G +V+
Sbjct: 66  GKGRESA----LSLACSKGYTDIVKMLLDCGVDVN 96

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 388 ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN-- 445
           ++H  AA+G +  + + ++Q + +   D  G+ PL  AA HG   +V+ L+  GADP   
Sbjct: 4   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            K ++SA    L  A + G+TDIV+ L+  G +V+
Sbjct: 64  GKGRESA----LSLACSKGYTDIVKMLLDCGVDVN 94

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
           AA  G L +VQ  +K+ +     +  G   LH A    +  IV  L++AGA+ N    DS
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP--DS 85
Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEV 479
            GW PLH AA+   T I  ALV  GA +
Sbjct: 86  HGWTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG-----HPV-KVQDSAGWLPLHEAANHGHTDIVQAL 437
           RG T LH+A  +G L  V  L +       H + K  +  G   LH A+ HG+  IV+ L
Sbjct: 77  RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
Query: 438 VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           VS GAD N + +   G   LH A +  + D+V  L+  GA+V+
Sbjct: 137 VSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
           T LH A  +G+L++V  L+K G    + D  G   +H AA  GHT IV  L++ G D + 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD- 136
Query: 447 KVQDSAGWLPLHEAANHGHT 466
            + D  G  PL  AA   H+
Sbjct: 137 -MMDQNGMTPLMWAAYRTHS 155

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 384 RGETALHVAAARGNLTLVQSLLKQG-----HPV-KVQDSAGWLPLHEAANHGHTDIVQAL 437
           RG T LH+A  +G L  V  L +       H + K  +  G   LH A+ HG+  IV+ L
Sbjct: 74  RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
Query: 438 VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           VS GAD N + +   G   LH A +  + D+V  L+  GA+V+
Sbjct: 134 VSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           W P+HEAA HGH   ++ L+S G   N    D     PLHEA   GH   V+ L+  GA+
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--PLHEACLGGHLSCVKILLKHGAQ 61
Query: 479 VS 480
           V+
Sbjct: 62  VN 63

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 41/129 (31%)
Query: 385 GETALHVAAARGNLTLVQSLLKQG------------HPV--------KVQD--------- 415
           G TALH + +  N  +VQ LL  G             P+        K QD         
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 416 ----------SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGH 465
                      AG   L  A +HG  D+V+AL++  AD N  VQD  G   L  A  HGH
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALMCACEHGH 228
Query: 466 TDIVQALVS 474
            +I   L++
Sbjct: 229 KEIAGLLLA 237

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA 460
           V+ L+  G  V  +D  G  PLH AA +GH ++V+ L+ AGAD N   QD  G      +
Sbjct: 22  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN--AQDKFGKTAFDIS 79
Query: 461 ANHGHTDIVQAL 472
            ++G+ D+ + L
Sbjct: 80  IDNGNEDLAEIL 91

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           W P+HEAA HGH   ++ L+S G   N    D     PLHEA   GH   V+ L+  GA+
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--PLHEACLGGHLSCVKILLKHGAQ 117
Query: 479 V 479
           V
Sbjct: 118 V 118

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
           + +P G   L  AAARG+L  + SLL                    K G+P         
Sbjct: 1   MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
                ++D  G+  +H+AA  G  D +Q L+   AD N  ++D+ G LPLH AA  GH  
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
           +V+ LV
Sbjct: 118 VVEFLV 123

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
           + +P G   L  AAARG+L  + SLL                    K G+P         
Sbjct: 1   MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
                ++D  G+  +H+AA  G  D +Q L+   AD N  ++D+ G LPLH AA  GH  
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
           +V+ LV
Sbjct: 118 VVEFLV 123

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
           + +P G   L  AAARG+L  + SLL                    K G+P         
Sbjct: 1   MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
                ++D  G+  +H+AA  G  D +Q L+   AD N  ++D+ G LPLH AA  GH  
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
           +V+ LV
Sbjct: 118 VVEFLV 123

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 380 LEKPRGETALHVAAARGNLTLVQSLL--------------------KQGHP--------- 410
           + +P G   L  AAARG+L  + SLL                    K G+P         
Sbjct: 1   MAEPWGNE-LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 411 ---VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
                ++D  G+  +H+AA  G  D +Q L+   AD N  ++D+ G LPLH AA  GH  
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN--IEDNEGNLPLHLAAKEGHLR 117
Query: 468 IVQALV 473
           +V+ LV
Sbjct: 118 VVEFLV 123

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           L EAA  G  D V+ L++ GAD   K  D  G  PLH AA +GH ++V+ L+ AGA+V
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADV 83

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-------------GWLP 421
           P TS  E   G+TALH+A    N+ LV++LL +G  V  + +              G  P
Sbjct: 67  PMTS--ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 422 LHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH 458
           L  AA  G  +IV+ L+  GAD   + QDS G   LH
Sbjct: 125 LSFAACVGSEEIVRLLIEHGAD--IRAQDSLGNTVLH 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	480
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-34
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-29
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-30
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-22
2rfa_A	232	Transient receptor potential cation channel subfa	8e-22
2rfa_A	232	Transient receptor potential cation channel subfa	7e-21
2rfa_A	232	Transient receptor potential cation channel subfa	1e-20
2rfa_A	232	Transient receptor potential cation channel subfa	4e-19
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	5e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-18
2etb_A	256	Transient receptor potential cation channel subfam	3e-18
2etb_A	256	Transient receptor potential cation channel subfam	5e-17
2etb_A	256	Transient receptor potential cation channel subfam	1e-16
2etb_A	256	Transient receptor potential cation channel subfam	4e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-18
2pnn_A	273	Transient receptor potential cation channel subfa	3e-17
2pnn_A	273	Transient receptor potential cation channel subfa	4e-17
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  124 bits (315), Expect = 2e-34
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           RGET LH+A+ +G++  V+ LL+ G    V+D AGW PLHEA NHGH  +V+ L+   A 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N          PLH+AA +GH DIV+ L+S GA  
Sbjct: 69  VNTT--GYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (257), Expect = 3e-26
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH A   G+L +V+ LL+    V         PLH+AA +GH DIV+ L+S GA  
Sbjct: 43  GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           N    +  G  P+    +     ++       +
Sbjct: 103 NAV--NIFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 88.2 bits (220), Expect = 4e-21
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           +  G   LH A+  G    V+ L+  G+DPN K  D AGW PLHEA NHGH  +V+ L+ 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 475 AGAEV 479
             A V
Sbjct: 65  HKALV 69

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            ++ LH AA  G++ +V+ LL  G      +  G  P+    +     ++       + 
Sbjct: 76  NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 7e-07
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           G DP     +  G   LH A+  G    V+ L+  G++ 
Sbjct: 1   GIDPF---TNHRGETLLHIASIKGDIPSVEYLLQNGSDP 36

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (288), Expect = 1e-30
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            +     A   G+L  V+  + +G  V      G  PLH AA+ G  +I++ L+  GAD 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    D     PL  A   GH   V+ L+S GA+ 
Sbjct: 67  N--APDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 97.1 bits (243), Expect = 2e-24
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G   LH AA  G L +++ LL +G  +   D     PL  A   GH   V+ L+S GAD 
Sbjct: 40  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQ 470
             K  D  G        N     ++Q
Sbjct: 100 TVKGPD--GLTAFEATDNQAIKALLQ 123

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  114 bits (289), Expect = 2e-30
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
               ++H  AA+G +  + + ++Q + +   D  G+ PL  AA HG   +V+ L+  GAD
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           P   +        L  A + G+TDIV+ L+  G +V
Sbjct: 62  PQ--LLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  112 bits (283), Expect = 1e-29
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T L  AAA G + +V+ LL+ G   ++        L  A + G+TDIV+ L+  G D 
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    D  G  PL  A +  H   V+ L+ +GA+ 
Sbjct: 96  N--EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  110 bits (277), Expect = 1e-28
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            E+AL +A ++G   +V+ LL  G  V   D  G  PL  A +  H   V+ L+ +GADP
Sbjct: 69  RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              ++  +G+  +  A   G+  + Q + S   ++
Sbjct: 129 T--IETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T L  A    ++  V+ LL+ G    ++  +G+  +  A   G+  + Q + S     
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

Query: 445 NDKVQD 450
              +++
Sbjct: 162 LQNIKE 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  114 bits (287), Expect = 4e-30
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           RG T L  A+A G +  V+ LL+ G    +        L  A+  G+TDIV  L+    D
Sbjct: 35  RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVD 94

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N  + D  G  PL  A    H   V+AL++ GA++
Sbjct: 95  IN--IYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  112 bits (284), Expect = 2e-29
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
              ++H  AA+G L  ++  L++G + V   D  G+ PL  A+  G  + V+ L+  GAD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           P+  +        L  A+  G+TDIV  L+    ++
Sbjct: 62  PH--ILAKERESALSLASTGGYTDIVGLLLERDVDI 95

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  112 bits (282), Expect = 3e-29
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            E+AL +A+  G   +V  LL++   + + D  G  PL  A    H   V+AL++ GAD 
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
               +  +G+ P+  A   G+  + Q + +   ++
Sbjct: 129 T--TEADSGYTPMDLAVALGYRKVQQVIENHILKL 161

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T L  A    ++  V++LL +G  +  +  +G+ P+  A   G+  + Q + +     
Sbjct: 102 GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161

Query: 445 NDKVQDSAGWLP 456
                +     P
Sbjct: 162 FQS--NLVPADP 171

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  112 bits (283), Expect = 7e-30
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
             +  L  AAARG +  V+ LL+ G      +  G  P+      G   + + L+  GA+
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE 69

Query: 444 PNDKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAEV 479
           PN    D A    P+H+AA  G  D +  L  AGA +
Sbjct: 70  PNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  108 bits (273), Expect = 2e-28
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAD 443
           G   + V    G+  + + LL  G      D A    P+H+AA  G  D +  L  AGA 
Sbjct: 45  GRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
            +  V D+ G LP+  A   GH DI + L +A  
Sbjct: 104 LD--VCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.5 bits (218), Expect = 6e-21
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
              + +   +    L  AA  G  + V+ L+ AGADPN    +  G  P+      G   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQ 58

Query: 468 IVQALVSAGAEV 479
           + + L+  GAE 
Sbjct: 59  VAELLLLHGAEP 70

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.2 bits (173), Expect = 7e-15
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
             +H AA  G L  +  L + G  + V D+ G LP+  A   GH DI + L +A  D
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  110 bits (278), Expect = 1e-29
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LL+ G  V  +D  G  PLH AA +GH ++V+ L+ AGAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           N K  D  G  PLH AA +GH ++V+ L+ AGA
Sbjct: 62  NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 84.7 bits (211), Expect = 2e-20
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           G  PLH AA +GH ++V+ L+ AGAD N K  D  G  PLH AA +GH ++V+ L+ AGA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 478 EV 479
           +V
Sbjct: 60  DV 61

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  112 bits (282), Expect = 2e-29
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAD 443
           G   + V    G+  + + LL  G      D A    P+H+AA  G  D +  L  AGA 
Sbjct: 45  GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +  V+D+ G LP+  A   GH D+ + L +A    
Sbjct: 104 LD--VRDAWGRLPVDLAEELGHRDVARYLRAAAGGT 137

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  111 bits (279), Expect = 4e-29
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               L  AAARG +  V++LL+ G      +S G  P+      G   + + L+  GA+P
Sbjct: 12  SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEP 70

Query: 445 NDKVQDSAGW-LPLHEAANHGHTDIVQALVSAGAEV 479
           N    D A    P+H+AA  G  D +  L  AGA +
Sbjct: 71  N--CADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.1 bits (222), Expect = 3e-21
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
             +H AA  G L  +  L + G  + V+D+ G LP+  A   GH D+ + L +A      
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR- 138

Query: 447 KVQDSAGWLPLHEAANHGHTDIV 469
                 G       A  G +DI 
Sbjct: 139 ------GSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI 468
                        L  AA  G  + V+AL+ AGA+PN    +S G  P+      G   +
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP--NSYGRRPIQVMMM-GSARV 59

Query: 469 VQALVSAGAEV 479
            + L+  GAE 
Sbjct: 60  AELLLLHGAEP 70

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIV 434
           G   + +A   G+  + + L       +  +          A  G +DI 
Sbjct: 111 GRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  109 bits (275), Expect = 7e-29
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LL+ G  V  +D  G  PLH AA +GH ++V+ L+ AGAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N K  D  G  PLH AA +GH ++V+ L+ AGA+V
Sbjct: 62  NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADV 94

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (272), Expect = 2e-28
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LL+ G  V  +D  G  PLH AA +GH ++V+ L+ AGAD 
Sbjct: 35  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           N K  D  G  PLH AA +GH ++V+ L+ AGA
Sbjct: 95  NAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  107 bits (270), Expect = 3e-28
 Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH AA  G+   V+ LL +G  V  +   G  PLH AA +GH +IV+ L++ GAD 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N +     G  P H A  +GH +IV+ L + GA+V
Sbjct: 69  NAR--SKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.4 bits (205), Expect = 3e-19
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQA 471
                 G  PLH AA +GH + V+ L+S GAD N +     G  PLH AA +GH +IV+ 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKL 60

Query: 472 LVSAGAEV 479
           L++ GA+V
Sbjct: 61  LLAKGADV 68

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+  +V+ LL +G  V  +   G  P H A  +GH +IV+ L + GAD 
Sbjct: 42  GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

Query: 445 NDKVQDSAGWLPLH 458
           N +          H
Sbjct: 102 NAR--SWGSSHHHH 113

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  108 bits (273), Expect = 3e-28
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 384 RGETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
           R    L  AAARG++  V+ LL ++       +  G   L      G T I   L+  GA
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            PN +  D++G  P+H+AA  G  D ++ LV  GA+V
Sbjct: 60  SPNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADV 94

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  102 bits (258), Expect = 4e-26
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TAL      G+  +   LLKQG    VQD++G  P+H+AA  G  D ++ LV  GAD 
Sbjct: 36  GKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    D  G LP+H A   GHT +V  L +  +++
Sbjct: 95  NVP--DGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.7 bits (242), Expect = 7e-24
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + +H AA  G L  ++ L++ G  V V D  G LP+H A   GHT +V  L +  +D 
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           + +  D+ G  PL  A   G  D+V  L  
Sbjct: 127 HRR--DARGLTPLELALQRGAQDLVDILQG 154

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  110 bits (277), Expect = 4e-28
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAD 443
            +  LH AA RGNL+ ++  L     V   D AG   L+ A + GH DIV+ L +    +
Sbjct: 73  IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N   Q+  G   LH AA  G+ DIVQ L++ GA  
Sbjct: 133 LN--QQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  105 bits (264), Expect = 3e-26
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G TAL+ A   G+  +V+ L  Q    +  Q+  G   LH AA  G+ DIVQ L++ GA 
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +  +++    L    A N     +++      A  
Sbjct: 166 TD--LRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
             +T      ++G   L+ S       V  Q  +   PLHEAA  G+   ++  +     
Sbjct: 44  MSDTNWWKGTSKGRTGLIPSNY-----VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
            N    D AG   L+ A + GH DIV+ L +    E+
Sbjct: 99  VNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIEL 133

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TALH AA +G   +VQ LL +G    +++    L    A N     +++      A  
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 445 NDKVQDSAGWLPLHEAANHGH 465
                ++  +L   ++    H
Sbjct: 200 TLS--NAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            G+  +  A           L  +   +            +  + G T ++ +       
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN------ 64

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                Q  +   PLHEAA  G+   ++  +     V
Sbjct: 65  -YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV 99

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 2/63 (3%)

Query: 410 PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469
           P       G + +  A           L     D               +  + G T ++
Sbjct: 4   PPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI--TDMSDTNWWKGTSKGRTGLI 61

Query: 470 QAL 472
            + 
Sbjct: 62  PSN 64

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  108 bits (273), Expect = 6e-28
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH A   G   +V+ L+ +G  + V +     PLH AA+HGH DIVQ L+   AD 
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    +  G +PLH A   G   + + LV+ GA V
Sbjct: 99  NAV--NEHGNVPLHYACFWGQDQVAEDLVANGALV 131

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  105 bits (265), Expect = 6e-27
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
               +      GN   V+  L    + +   D  G+ PLH A   G + +V+ L+  GA 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N    +     PLH AA+HGH DIVQ L+   A++
Sbjct: 65  INVM--NRGDDTPLHLAASHGHRDIVQKLLQYKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  104 bits (262), Expect = 2e-26
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            +T LH+AA+ G+  +VQ LL+    +   +  G +PLH A   G   + + LV+ GA  
Sbjct: 72  DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +    +  G +P+ +A       + +     G  +
Sbjct: 132 SIC--NKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.2 bits (199), Expect = 9e-18
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G   LH A   G   + + L+  G  V + +  G +P+ +A       + +     G + 
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

Query: 445 NDKVQDSAGWLPLHEAANHGHT 466
           N          P  +    G T
Sbjct: 165 NRI--------PYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGA-DPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
                  +      G+   V+  +     D N    D  G+ PLH A   G + +V+ L+
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG--DDHGFSPLHWACREGRSAVVEMLI 59

Query: 474 SAGAEV 479
             GA +
Sbjct: 60  MRGARI 65

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  110 bits (277), Expect = 7e-28
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
             P     L  ++  G   LVQ ++ +     + +  G   LH A   GHT+IV+ LV  
Sbjct: 33  FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           G + N    DS GW PLH AA+  +  + + LV +GA V
Sbjct: 93  GVNVNAA--DSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  106 bits (268), Expect = 1e-26
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALH A   G+  +V+ L++ G  V   DS GW PLH AA+  +  + + LV +GA  
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

Query: 445 NDK-VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                 D        E    G+T   Q L     ++
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  105 bits (263), Expect = 5e-26
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+ +L               +  G  VK  +      L +++  G  D+VQ ++    DP
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +    +  G   LH A   GHT+IV+ LV  G  V
Sbjct: 64  SLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNV 96

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG---HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
           G T LH AA+  N+ + + L++ G     +   D        E    G+T   Q L    
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
                   +      L +       ++    +  G  ++
Sbjct: 163 EKMGIM--NKGVIYALWDYEPQNDDEL---PMKEGDCMT 196

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           +  G + L               ++ G        +      L +++  G  D+VQ ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 475 AGAEV 479
              + 
Sbjct: 59  EVDDP 63

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 6/82 (7%), Positives = 18/82 (21%), Gaps = 3/82 (3%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           +           G     Q L      + + +      L +       ++    +  G  
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDC 194

Query: 444 PNDKVQDSAGWLPLHEAANHGH 465
                ++    +    A  +  
Sbjct: 195 MTIIHREDEDEIEWWWARLNDK 216

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (275), Expect = 4e-27
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             + +H AA  G+   +++L+ QG  V +  +    PLHEA   GH   V+ L+  GA  
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N     +    PL  A   G  D V  L+  GA V
Sbjct: 119 NGV--TADWHTPLFNACVSGSWDCVNLLLQHGASV 151

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  105 bits (265), Expect = 9e-26
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             + +H AA RG++  V SL+  G  +  + S    PL+ A  +     V+ L+ +GAD 
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N   Q      PLH        ++   L+  GA+ 
Sbjct: 217 N---QGKGQDSPLHAVVRTASEELACLLMDFGADT 248

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (261), Expect = 3e-25
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             + LH A   G+L+ V+ LLK G  V    +    PL  A   G  D V  L+  GA  
Sbjct: 92  HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                +S    P+HEAA  GH + V +L++ G  +
Sbjct: 152 Q---PESDLASPIHEAARRGHVECVNSLIAYGGNI 183

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  101 bits (255), Expect = 2e-24
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             T L  A   G+   V  LL+ G  V+ +      P+HEAA  GH + V +L++ G + 
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNI 183

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           + K   S    PL+ A  +     V+ L+ +GA+V
Sbjct: 184 DHK--ISHLGTPLYLACENQQRACVKKLLESGADV 216

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 94.1 bits (235), Expect = 8e-22
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G          G   L        +P+     + W P+HEAA HGH   ++ L+S G   
Sbjct: 33  GSKPAGPRDFPGIRLLS-------NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N     +    PLHEA   GH   V+ L+  GA+V
Sbjct: 86  NII--TADHVSPLHEACLGGHLSCVKILLKHGAQV 118

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 91.4 bits (228), Expect = 7e-21
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
              T L++A        V+ LL+ G  V  Q      PLH        ++   L+  GAD
Sbjct: 189 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGAD 247

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              K  ++ G  P+           +  L   GA +
Sbjct: 248 TQAK--NAEGKRPVELVPPESPLAQL-FLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 14/94 (14%)

Query: 391 VAAARGNLTLVQSLLKQGHPVKVQDSA-----GWLPLHEAANHGHTDIVQALVSAGADPN 445
           + ++  +      L+ +G  +   D       G  P       G   +   L+       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-- 58

Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                   W P+HEAA HGH   ++ L+S G  V
Sbjct: 59  -------DWSPMHEAAIHGHQLSLRNLISQGWAV 85

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            ++ LH      +  L   L+  G   + +++ G  P+           +  L   GA  
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASL 280

Query: 445 N 445
            
Sbjct: 281 P 281

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  107 bits (271), Expect = 5e-27
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               +  A   G     + L++ G+ V+  D      LH AA +   D+V+  +S GA  
Sbjct: 9   STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +    D     PLH A   GH  +V  L+  GA+ 
Sbjct: 69  DQLGGDL-NSTPLHWATRQGHLSMVVQLMKYGADP 102

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  102 bits (256), Expect = 6e-25
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
              T LH A  +G+L++V  L+K G    + D  G   +H AA  GHT IV  L++ G D
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134

Query: 444 PNDKVQDSAGWLPLHEAANHGHT-DIVQALVSAGAEV 479
            +    D  G  PL  AA   H+ D  + L++    V
Sbjct: 135 VDMM--DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  100 bits (251), Expect = 3e-24
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT-DIVQALVSAGAD 443
           G + +H+AA  G+ ++V  L+ +G  V + D  G  PL  AA   H+ D  + L++    
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N           LH A   G+T ++  L+ AGA V
Sbjct: 169 VNLG-DKYHKNTALHWAVLAGNTTVISLLLEAGANV 203

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.8 bits (250), Expect = 4e-24
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 385 GETALHVAAARGN-LTLVQSLLKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGA 442
           G T L  AA R + +   + LL     V + D       LH A   G+T ++  L+ AGA
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           + + +  +  G   L  A    +  ++  L  A    
Sbjct: 202 NVDAQ--NIKGESALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
           +   D      + +A  +G  +  + LV AG D      D      LH AA +   D+V+
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVK 59

Query: 471 ALVSAGAEV 479
             +S GA V
Sbjct: 60  YYISKGAIV 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.1 bits (178), Expect = 1e-14
 Identities = 19/66 (28%), Positives = 26/66 (39%)

Query: 382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
           K    TALH A   GN T++  LL+ G  V  Q+  G   L  A    +  ++  L  A 
Sbjct: 174 KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233

Query: 442 ADPNDK 447
                 
Sbjct: 234 QAKGYD 239

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  107 bits (269), Expect = 7e-27
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               L  AA  G L +VQ  +K+ +     +  G   LH A    +  IV  L++AGA+ 
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    DS GW PLH AA+   T I  ALV  GA +
Sbjct: 81  NSP--DSHGWTPLHCAASCNDTVICMALVQHGAAI 113

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALH A    N ++V  L+  G  V   DS GW PLH AA+   T I  ALV  GA  
Sbjct: 54  GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

Query: 445 NDKVQDSAGWLPLHEAANH--GHTDIVQALVSAGAEV 479
                 S G     +   +  G+ D    L      +
Sbjct: 114 FAT-TLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 5/87 (5%)

Query: 385 GETALHVAAA--RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
           G TA         G       L      + + +S     L + +     D +        
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESV 179

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIV 469
               +  D         AA HG    V
Sbjct: 180 TVLRR--DGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 434 VQALVSAGADPNDKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAEV 479
           +++++     P    +      + L +AA  G  ++VQ  V    + 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP 47

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 15/74 (20%), Positives = 19/74 (25%), Gaps = 2/74 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
              AL    +      +     +   V  +D         AA HG    V      G  P
Sbjct: 156 AVYALW-DYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY-FGLFP 213

Query: 445 NDKVQDSAGWLPLH 458
             K Q S      H
Sbjct: 214 RVKPQRSKVKHHHH 227

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (264), Expect = 8e-27
 Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               L  AA  G    V+ L+  G  V  +D++GW PLH AA +GH +IV+ L+  GAD 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    D AG  PL  AA  GH +IV+ L+  GA+V
Sbjct: 74  NAV--DHAGMTPLRLAALFGHLEIVEVLLKNGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  104 bits (262), Expect = 2e-26
 Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+L +V+ LLK G  V   D AG  PL  AA  GH +IV+ L+  GAD 
Sbjct: 47  GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    D  G  PLH AA  GH +IV+ L+  GA+V
Sbjct: 107 NAN--DMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 96.3 bits (241), Expect = 1e-23
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T L +AA  G+L +V+ LLK G  V   D  G  PLH AA  GH +IV+ L+  GAD 
Sbjct: 80  GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           N +  D  G      + ++G+ D+ + L  
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 77.8 bits (193), Expect = 4e-17
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464
           ++  H      S     L EAA  G  D V+ L++ GAD N +  D++GW PLH AA +G
Sbjct: 1   MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE--DASGWTPLHLAAFNG 58

Query: 465 HTDIVQALVSAGAEV 479
           H +IV+ L+  GA+V
Sbjct: 59  HLEIVEVLLKNGADV 73

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  104 bits (263), Expect = 9e-27
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
                L  AAARG+L  + SLL+    V  Q+  G   L      G+ +I + L+  GA+
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN 62

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           P+ K  D  G+  +H+AA  G  D +Q L+   A+V
Sbjct: 63  PDLK--DRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  103 bits (259), Expect = 3e-26
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TAL      GN  + + LL +G    ++D  G+  +H+AA  G  D +Q L+   AD 
Sbjct: 38  GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           N +  D+ G LPLH AA  GH  +V+ LV   A 
Sbjct: 97  NIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 98.6 bits (247), Expect = 1e-24
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-D 443
           G   +H AA  G L  +Q+LL+    V ++D+ G LPLH AA  GH  +V+ LV   A +
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
              +  +  G      A  +G  ++V  + + GA
Sbjct: 130 VGHR--NHKGDTACDLARLYGRNEVVSLMQANGA 161

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  106 bits (267), Expect = 1e-26
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             + LH AA  G++ +   L++ G  +         PL EAA + H + V+ L+ AGA  
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           + K  D+ G   LH AA  GH ++VQ L+S G 
Sbjct: 71  DPK--DAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  105 bits (266), Expect = 2e-26
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T +  A    ++ LV+ LL +G  + ++D+   + LH AA  G  DI + L++A  D 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +    +  G  PLH AA     D V   +S  ++V
Sbjct: 171 HAV--NIHGDSPLHIAARENRYDCVVLFLSRDSDV 203

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  105 bits (264), Expect = 4e-26
 Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-VKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G T LH+AA +G+  +VQ LL  G   V  QD  GW P+  A  + H D+V+ L+S G+D
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N +  D+   + LH AA  G  DI + L++A  ++
Sbjct: 137 INIR--DNEENICLHWAAFSGCVDIAEILLAAKCDL 170

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  101 bits (254), Expect = 1e-24
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               LH AA  G + + + LL     +   +  G  PLH AA     D V   +S  +D 
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             K  +  G  PL  A+ +        +  A  
Sbjct: 204 TLK--NKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.5 bits (205), Expect = 4e-18
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
            K++      PLH AA  GH DI   LV AGA+ +          PL EAA + H + V+
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVK 61

Query: 471 ALVSAGAEV 479
            L+ AGA V
Sbjct: 62  YLIKAGALV 70

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G++ LH+AA       V   L +   V +++  G  PL  A+ +        +  A  D
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +   +        PLH AA  GH DI   LV AGA +
Sbjct: 2   MNFKME--HQNKRSPLHAAAEAGHVDICHMLVQAGANI 37

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (276), Expect = 2e-26
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LHVA+  G+L +V++LL++G    V +     PLH AA  GHT++ + L+   A  
Sbjct: 14  GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N K        PLH AA  GHT++V+ L+   A  
Sbjct: 74  NAK--AKDDQTPLHCAARIGHTNMVKLLLENNANP 106

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (275), Expect = 3e-26
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+ A  G++ +   L+K G  V      G+ PLH A+++G+  +V+ L+   AD 
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N K     G+ PLH+AA  GHTDIV  L+  GA  
Sbjct: 338 NAK--TKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (274), Expect = 5e-26
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LHVA    NL +V+ LL +G         G+ PLH AA     ++ ++L+  G   
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N   +   G  PLH AA  GH ++V  L+S  A  
Sbjct: 239 N--AESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (274), Expect = 5e-26
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           + ET LH+AA  G+  + + LL+    V  +      PLH AA  GHT++V+ L+   A+
Sbjct: 46  KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           PN  +  +AG  PLH AA  GH + V AL+   A  
Sbjct: 106 PN--LATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (273), Expect = 6e-26
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA +  + + +SLL+ G     +   G  PLH AA  GH ++V  L+S  A+ 
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N  + + +G  PLH  A  GH  +   L+  G  V
Sbjct: 272 N--LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (272), Expect = 9e-26
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LHVAA  G + + + LL++          G  PLH A +H + DIV+ L+  G  P
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +       G+ PLH AA     ++ ++L+  G   
Sbjct: 206 H--SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  107 bits (271), Expect = 1e-25
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+  +V  LL +     + + +G  PLH  A  GH  +   L+  G   
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +       G+ PLH A+++G+  +V+ L+   A+V
Sbjct: 305 DAT--TRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  107 bits (269), Expect = 2e-25
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            +T LH AA  G+  +V+ LL+      +  +AG  PLH AA  GH + V AL+   A  
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                   G+ PLH AA +G   + + L+   A  
Sbjct: 140 ACM--TKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  106 bits (266), Expect = 6e-25
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G++  V +LL++          G+ PLH AA +G   + + L+   A P
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N       G  PLH A +H + DIV+ L+  G   
Sbjct: 173 NAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  103 bits (259), Expect = 4e-24
 Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LHVA+  GN+ LV+ LL+    V  +   G+ PLH+AA  GHTDIV  L+  GA P
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           N+    S G  PL  A   G+  +   L     E
Sbjct: 371 NEV--SSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.5 bits (205), Expect = 4e-17
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
                 +G  PLH A+  GH  IV+ L+  GA PN    +     PLH AA  GHT++ +
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAK 64

Query: 471 ALVSAGAEV 479
            L+   A+V
Sbjct: 65  YLLQNKAKV 73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.4 bits (171), Expect = 7e-13
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL---VSAG 441
           G + LH AA +G+  +V  LLK G       S G  PL  A   G+  +   L       
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 403

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           +     V D                + V  ++    +
Sbjct: 404 SFVL--VSDKHRM---------SFPETVDEILDVSED 429

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  103 bits (260), Expect = 2e-26
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           R  T LH AA    +++V+ LL+ G  V  +D  G +PLH A ++GH ++ + LV  GA 
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N    D   + PLHEAA  G  +I + L+  GA+ 
Sbjct: 101 VNVA--DLWKFTPLHEAAAKGKYEICKLLLQHGADP 134

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            +  L  AA  G++  V+ L   Q    +  +     PLH AA +    +V+ L+  GAD
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            + K  D  G +PLH A ++GH ++ + LV  GA V
Sbjct: 68  VHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAVV 101

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G   LH A + G+  + + L+K G  V V D   + PLHEAA  G  +I + L+  GADP
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             K  +  G  PL    + G TDI   L    A
Sbjct: 135 TKK--NRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.9 bits (175), Expect = 8e-15
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 415 DSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
           +S     L EAA  G  + V+ L +    +  D   +     PLH AA +    +V+ L+
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 474 SAGAEV 479
             GA+V
Sbjct: 63  QHGADV 68

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  103 bits (260), Expect = 3e-26
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
             ET    AA + +   +  LL+    V   D  G   L   A  G    V+ L  AGAD
Sbjct: 43  EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            + +     G   LH AA +   ++V+ALV  GA++
Sbjct: 102 LDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADI 136

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  100 bits (252), Expect = 4e-25
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
           G TAL   A  G+   V+ L + G  +  +D   G   LH AA +   ++V+ALV  GAD
Sbjct: 76  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              +  D  G   L  A     T      +  G  +
Sbjct: 136 IEVE--DERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 91.4 bits (228), Expect = 1e-21
 Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 6/96 (6%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            G     +    G+             V    S    P   AA       +  L+    D
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRD 68

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +    D  G   L   A  G    V+ L  AGA++
Sbjct: 69  VDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADL 102

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALH+AA      +V++L++ G  ++V+D  G   L  A     T      +  G   
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169

Query: 445 NDK 447
             +
Sbjct: 170 GLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 5/35 (14%), Positives = 8/35 (22%)

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                   G +        GH+          A+V
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV 40

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (266), Expect = 5e-26
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH A       +V+ LL+ G    ++   G  P   AA  G   +++  +S GAD 
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N+   D  G+    EAA +G    ++ L   GA V
Sbjct: 99  NEC--DFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  104 bits (263), Expect = 2e-25
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGAD 443
               L  A    ++ LVQ LL+ G  V  Q+   GW PLH A      DIV+ L+  GAD
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           P  +     G  P   AA  G   +++  +S GA+V
Sbjct: 65  PVLR--KKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 99.5 bits (249), Expect = 1e-23
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T   +AA  G++ L++  L +G  V   D  G+    EAA +G    ++ L   GA+ 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 445 NDK--------VQDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
           N +             G   L +AA  GH ++++ L+   GA+V
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 385 GETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS- 439
           G  AL  A    +      +   LL  G  V V+   G  PL  A    H  +VQ L+  
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              + ND   DS G   L  A       I + L   GA  
Sbjct: 242 EHIEINDT--DSDGKTALLLAVELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.4 bits (215), Expect = 4e-19
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTD----IVQALVS 439
           G TAL  AA +G++ +++ LL + G  V   D+ G   L  A           I   L+ 
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
            GAD N +     G  PL  A    H  +VQ L+     E+
Sbjct: 208 HGADVNVR--GERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.6 bits (174), Expect = 9e-14
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G+T L +A  + +L LVQ LL ++   +   DS G   L  A       I + L   GA 
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 444 PNDK 447
            +  
Sbjct: 279 TDCG 282

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (258), Expect = 1e-25
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               L  A  R    + + L    + V   D+ G  PL+ A ++   +I +AL+  GAD 
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           N +  +S    P   A   G T+I+  ++    
Sbjct: 66  NLQ--NSISDSPYLYAGAQGRTEILAYMLKHAT 96

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 94.4 bits (236), Expect = 1e-22
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-VKVQDSAGWLPLHEAANHGHTDIVQALVSAG-A 442
            ++    A A+G   ++  +LK   P +   +  G   L  AA  GH D V+ L+  G  
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 443 DPNDKVQDSAGWLPLHEAA-----NHGHTDIVQALVSAGAEV 479
           D + +  +  G+  L EA      N  + DIV+ L+  GA+ 
Sbjct: 132 DIDFQ--NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ 171

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 91.7 bits (229), Expect = 1e-21
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-VKVQDSAGWLPLHEAA-----NHGHTDIVQALV 438
           G  AL  AA +G++  V+ LL+ G   +  Q+  G+  L EA      N  + DIV+ L+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
             GAD + K  D++G   +  A   G+T+I + L  
Sbjct: 166 ENGADQSIK--DNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 78.6 bits (195), Expect = 4e-17
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
           ++       L  A       + + L       ++   D+ G  PL+ A ++   +I +AL
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV--DTEGNTPLNIAVHNNDIEIAKAL 58

Query: 473 VSAGAEV 479
           +  GA++
Sbjct: 59  IDRGADI 65

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  101 bits (254), Expect = 1e-25
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH+AA  G+ +  + LL+ G     +      PLH AA+ GH +IV+ L+  GAD 
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N K  D      LH A  H H ++V+ L+  GA+V
Sbjct: 94  NAK--DMLKMTALHWATEHNHQEVVELLIKYGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 97.8 bits (245), Expect = 2e-24
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               L  AA  G    V+ L+  G P    D  G  PLH AA +GH    + L+ AG   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           + +        PLH AA+ GH +IV+ L+  GA+V
Sbjct: 61  DAR--TKVDRTPLHMAASEGHANIVEVLLKHGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.4 bits (231), Expect = 2e-22
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             T LH+AA+ G+  +V+ LLK G  V  +D      LH A  H H ++V+ L+  GAD 
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
           + +            + ++G+ D+ + L
Sbjct: 127 HTQ--SKFCKTAFDISIDNGNEDLAEIL 152

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (266), Expect = 2e-25
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           R  T LH+AA    + +VQ LL+ G  V  +D  G +PLH A ++GH ++ + L+  GA 
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N    D   + PLHEAA+    ++   L+S GA+ 
Sbjct: 117 VNAM--DLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.9 bits (250), Expect = 3e-23
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLT-LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            +  L  AA  GN   L+  L          D     PLH AA +    IVQ L+  GAD
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            + K  D  G +PLH A ++GH ++ + L+  GA V
Sbjct: 84  VHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.1 bits (248), Expect = 4e-23
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 385 GETALHVAAARG---NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
            ETALH A A        + + LL++G  V  ++     PLH AA   H D+++ L   G
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           A  N    DS G   LH AA  GH    + L+S G++ 
Sbjct: 271 AKMNAL--DSLGQTALHRAALAGHLQTCRLLLSYGSDP 306

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 98.3 bits (246), Expect = 8e-23
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G   LH A + G+  + + LLK G  V   D   + PLHEAA+    ++   L+S GADP
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
                +  G   +  A      + +       +
Sbjct: 151 TLV--NCHGKSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 90.6 bits (226), Expect = 3e-20
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH---TDIVQALVSAG 441
           G + L  AA   +L  V+  L        Q  +    LH A    H     + + L+  G
Sbjct: 179 GHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           A+ N+K  +     PLH AA   H D+++ L   GA++
Sbjct: 238 ANVNEK--NKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             T LHVAA R +  +++ L K G  +   DS G   LH AA  GH    + L+S G+DP
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +       G+            + VQ ++S    +
Sbjct: 307 SII--SLQGFTAAQMGN-----EAVQQILSESTPM 334

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.3 bits (194), Expect = 5e-16
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 22/117 (18%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-- 442
             T LH AA++  + +   LL  G    + +  G   +  A      + +       +  
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183

Query: 443 -----------------DPNDKVQDSAGWLPLHEAANHGH---TDIVQALVSAGAEV 479
                            +  +  Q  +    LH A    H     + + L+  GA V
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.0 bits (188), Expect = 3e-15
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 16/96 (16%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAA-NHGHTDIVQALVSAGAD 443
           G++AL              L        +        L EAA +     ++  L     +
Sbjct: 4   GKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +    D     PLH AA +    IVQ L+  GA+V
Sbjct: 51  CHAS--DGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TALH AA  G+L   + LL  G    +    G+            + VQ ++S     
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPM 334

Query: 445 NDKVQDSAGWLPLHEAANHG 464
                D      L EA+  G
Sbjct: 335 RTS--DVDY--RLLEASKAG 350

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  104 bits (262), Expect = 2e-25
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG---HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
           G+TALH+A    +   +  LL        + +Q+  G   LH AA  G    V+ L +AG
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           A       +  G   LH A           L+       
Sbjct: 69  AGVLVA--ERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  100 bits (251), Expect = 5e-24
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
           G T LHVA    +  +V+ L   G  +   +   G  PLH A       +++ L+ AGAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           P  +     G  PL  A    +  + + L + GA  
Sbjct: 218 PTAR--MYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+A      ++++ LLK G     +   G  PL  A    +  + + L + GA  
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
            +         P   + +   +D     
Sbjct: 252 PED--GGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 3/135 (2%)

Query: 345 RLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL 404
           R+ A     +L           + S T  T +           A   +            
Sbjct: 87  RVRAHTCACVLLQPRPS--HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 405 LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG 464
                 ++ ++  G  PLH A  H   ++V+ L  AGAD N       G  PLH A    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC-GRTPLHLAVEAQ 203

Query: 465 HTDIVQALVSAGAEV 479
              +++ L+ AGA+ 
Sbjct: 204 AASVLELLLKAGADP 218

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TALH+AA  G  + V+ L   G  V V +  G   LH A           L+      
Sbjct: 45  GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104

Query: 445 NDKVQDSAGWLP------------LHEAANHGHTDIVQALVSAGAEV 479
                D+                   ++  +   +          ++
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  106 bits (266), Expect = 2e-25
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               +HVAA +G    V+ L++ G    +Q+  G   LH A   G  D  + L S G   
Sbjct: 20  NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH 79

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +       G  P+H A     TD+V ALV    E 
Sbjct: 80  SLW----HGQKPIHLAVMANKTDLVVALVEGAKER 110

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.4 bits (246), Expect = 1e-22
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH A       +    ++ G  V ++D+   +PL+ +       + + L+      
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270

Query: 445 NDK-----------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
             +                    +  AA+    +++Q L     EV
Sbjct: 271 LIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 97.2 bits (243), Expect = 3e-22
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-----VKVQDSAGWLPLHEAANHGHTDIVQALVS 439
            ET L  A    N   +  ++          +   +  G   LH A      D+    V 
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            G D N +  D+   +PL+ +       + + L+      
Sbjct: 233 MGIDVNME--DNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 95.7 bits (239), Expect = 7e-22
 Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 15/108 (13%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-------------GWLPLHEAANHGHT 431
               L+++     + L + LL++     +Q                    +  AA+    
Sbjct: 244 HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303

Query: 432 DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +++Q L     +       + G     +        + +  ++  A V
Sbjct: 304 EVLQLLQEKLDEVVRS--LNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.4 bits (233), Expect = 5e-21
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 385 GETALHVAAARGNLTL--VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALV---- 438
           G+TALH     G   L  ++ L++ G     +D A   PL  A    + + +  ++    
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197

Query: 439 -SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
             +    +    +  G   LH A      D+    V  G +V
Sbjct: 198 SKSSLRLDYA--NKQGNSHLHWAILINWEDVAMRFVEMGIDV 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALH+A   G +   + L   G    +    G  P+H A     TD+V ALV    + 
Sbjct: 53  GCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE- 109

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
                   G +P          ++ +     
Sbjct: 110 -------RGQMPESLLNECDEREVNEIGSHV 133

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 7e-17
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
               D      +H AA  G TD V+ L+  G  P  +  +  G   LH A   G  D  +
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAK 70

Query: 471 ALVSAGAEV 479
            L S G   
Sbjct: 71  YLASVGEVH 79

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.5 bits (184), Expect = 9e-15
 Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 377 TSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
           T L ++      +  AA      ++Q L ++   V    + G     +        + + 
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341

Query: 437 LVSAGADPNDKVQDSAGWLPLHEA 460
            ++  A    +    +       +
Sbjct: 342 KLAPSAPVRTR--SRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                 +      D      +H AA  G TD V+ L+  G   
Sbjct: 6   TDFPKLNRIKS--DDENMEKIHVAARKGQTDEVRRLIETGVSP 46

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (253), Expect = 4e-25
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             T L VA   G    +  L++    ++ +D  G   L  A  +    I + L+S G++ 
Sbjct: 35  NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N K  D +G  PL  +   G++++   L+  GA V
Sbjct: 95  NTK--DFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 98.6 bits (247), Expect = 3e-24
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TAL  A     L + + LL +G  V  +D +G  PL  +   G++++   L+  GA+ 
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           ND+  +  G  PL  A+ +G ++IV+ L+  GA++
Sbjct: 128 NDR--NLEGETPLIVASKYGRSEIVKKLLELGADI 160

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.5 bits (231), Expect = 5e-22
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+T L  +   G   +   LL+ G  V  ++  G  PL  A+ +G ++IV+ L+  GAD 
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           + +  D  G      A   G  ++++       
Sbjct: 161 SAR--DLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.4 bits (210), Expect = 4e-19
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           GE    +   +     +  L         +DS    PL  A   G  + +  LV      
Sbjct: 8   GEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            DK  D  G   L  A  +    I + L+S G+ V
Sbjct: 62  EDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (256), Expect = 5e-25
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + L  A    +L++VQ LL+ G  V  Q  +G   LH A+  G   +V+ LV +GAD 
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           + K  +     PL  A +    DI++   +  A
Sbjct: 210 SLK--NCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  100 bits (251), Expect = 3e-24
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP----VKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           G+TA H+A    + T +++LL    P    ++ ++  G   LH A N    + VQ L+  
Sbjct: 79  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           GAD +     S G  PL  A  +    +VQ L+  GA V
Sbjct: 139 GADIDAVDIKS-GRSPLIHAVENNSLSMVQLLLQHGANV 176

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 99.4 bits (249), Expect = 4e-24
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            +T LH+A      ++V+ L+  G      D  G    H A  H     ++AL+ + A  
Sbjct: 46  RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105

Query: 445 NDKV--QDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              +  ++  G   LH A N    + VQ L+  GA++
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 99.1 bits (248), Expect = 7e-24
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
           G TALHVA        VQ LL++G  +   D  +G  PL  A  +    +VQ L+  GA+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N +    +G   LH A+  G   +V+ LV +GA+ 
Sbjct: 176 VNAQ--MYSGSSALHSASGRGLLPLVRTLVRSGADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.9 bits (245), Expect = 2e-23
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 385 GETALHVAAARGNLTLVQSLL----KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           G+T LH+A  +GNL  V  L+    + G  + + ++    PLH A       +V+ LV+A
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           GA P     D  G    H A  H     ++AL+ + A  +
Sbjct: 69  GASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.3 bits (176), Expect = 3e-14
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 414 QDSAGWLPLHEAANHGHTDIVQALVS----AGADPNDKVQDSAGWLPLHEAANHGHTDIV 469
            D  G  PLH A   G+   V  LV+     G + +    ++    PLH A       +V
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVV 62

Query: 470 QALVSAGAEV 479
           + LV+AGA  
Sbjct: 63  RLLVTAGASP 72

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 98.2 bits (246), Expect = 9e-25
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               L  AA  G    V+ L+  G  V  +D  G  PL+ A  HGH +IV+ L+  GAD 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    D+ G+ PLH AA  GH +I + L+  GA+V
Sbjct: 74  NAV--DAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.4 bits (231), Expect = 1e-22
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T L++A A G+L +V+ LLK G  V   D+ G+ PLH AA  GH +I + L+  GAD 
Sbjct: 47  GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           N +  D  G      +  +G+ D+ + L  
Sbjct: 107 NAQ--DKFGKTAFDISIGNGNEDLAEILQK 134

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  100 bits (253), Expect = 9e-25
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G++ALH AAA  N+     LLK G    +Q++    PL  AA  G  +  + L+   A+ 
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 184

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           +    D    LP   A    H DIV+ L       S
Sbjct: 185 DIT--DHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.0 bits (248), Expect = 4e-24
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G T LH A +     + Q L++     +  +   G  PL  AA      +++ L+++ AD
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N    D  G   LH AA   + D    L+  GA  
Sbjct: 118 VNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANK 151

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.0 bits (248), Expect = 5e-24
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T L +AA      +++ L+     V   D  G   LH AA   + D    L+  GA+ 
Sbjct: 92  GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           + +  ++    PL  AA  G  +  + L+   A  
Sbjct: 152 DMQ--NNREETPLFLAAREGSYETAKVLLDHFANR 184

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.9 bits (240), Expect = 6e-23
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-D 443
           GETALH+AA        + LL+      +QD+ G  PLH A +     + Q L+   A D
Sbjct: 25  GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            + +     G  PL  AA      +++ L+++ A+V
Sbjct: 85  LDAR--MHDGTTPLILAARLAVEGMLEDLINSHADV 118

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.4 bits (197), Expect = 4e-17
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 396 GNLTLVQSLLKQGHPVK-VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW 454
               ++   + QG  +    D  G   LH AA +  +D  + L+ A AD N +  D+ G 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGR 59

Query: 455 LPLHEAANHGHTDIVQALVSAGA 477
            PLH A +     + Q L+   A
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRA 82

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.5 bits (135), Expect = 5e-09
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 429 GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
               ++   +  GA  +++  D  G   LH AA +  +D  + L+ A A+ 
Sbjct: 2   DAPAVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEASADA 51

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  101 bits (254), Expect = 1e-24
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
             ET    AA + +   +  LL +   V   D  G   L   A  G    V+ L  AGAD
Sbjct: 44  EYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            + +     G   LH AA +   ++V+ALV  GA++
Sbjct: 103 LDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADI 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =   99 bits (250), Expect = 4e-24
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
           G TAL   A  G+   V+ L + G  +  +D   G   LH AA +   ++V+ALV  GAD
Sbjct: 77  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              +  D  G   L  A     T      +  G  +
Sbjct: 137 IEVE--DERGLTALELAREILKTTPKGNPMQFGRRI 170

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALH+AA      +V++L++ G  ++V+D  G   L  A     T      +  G   
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170

Query: 445 NDK--------------------VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
             +                     +   G    +        D         AE 
Sbjct: 171 GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED 225

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 12/95 (12%), Positives = 20/95 (21%), Gaps = 25/95 (26%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           GE    + +                        G +        GH+          AD 
Sbjct: 1   GEVNKIIGSRTAG-------------------EGAMEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
             +        P   AA       +  L+    +V
Sbjct: 42  VSE-----YETPWWTAARKADEQALSQLLE-DRDV 70

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 13/103 (12%), Positives = 23/103 (22%), Gaps = 26/103 (25%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG--------------------HPVKV--QDSAGWLPL 422
           G TAL +A      T   + ++ G                       ++  +   G    
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE 203

Query: 423 HEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGH 465
           +        D         A+   K  +      L  A     
Sbjct: 204 YLVRWKDGGDCEWVKGVHVAEDVAKDYEDG----LEYAVAESV 242

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (256), Expect = 1e-24
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G +A + A A  N+ LV +LL  G    + +     PLH+AA    T IV+ L+ +G D 
Sbjct: 31  GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD 88

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +    D  G   L+ A + G+   V+  V     +
Sbjct: 89  SQF--DDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  100 bits (251), Expect = 7e-24
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            E  LH AA   +  +V+ LL  G      D  G   L+ A + G+   V+  V      
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 445 NDKVQDSAGWL-PLHEAANHGHTDIVQALVSAGA 477
                   GW    + A       IV   +S   
Sbjct: 122 MFY--GKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 98.8 bits (247), Expect = 2e-23
 Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            +T+ + A    ++++V   L +  P     +     +H    +GH D++  L+      
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187

Query: 445 NDKVQDSAGWLP-LHEAANHGHTDIVQALVSAGAEV 479
           N    +S  ++P +  A ++   +++QAL      +
Sbjct: 188 NTN--NSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 91.8 bits (229), Expect = 5e-21
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLP-LHEAANHGHTDIVQALVSAGAD 443
             + +H+    G++ ++  LL         +S  ++P +  A ++   +++QAL     +
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                          E       +I + ++    E 
Sbjct: 221 IYS---------ANLENVLLDDAEIAKMIIEKHVEY 247

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.4 bits (215), Expect = 4e-19
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G     +         ++S L         D  G    + A    +  +V  L++AGA  
Sbjct: 1   GMDLSRINT--WKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N          PLH+AA    T IV+ L+ +G + 
Sbjct: 58  NLL----ENEFPLHQAATLEDTKIVKILLFSGLDD 88

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 7/90 (7%), Positives = 24/90 (26%), Gaps = 10/90 (11%)

Query: 385 GET-ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
                + +A    ++ ++Q+L K    + +          E       +I + ++    +
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYD--INIYS-----ANLENVLLDDAEIAKMIIEKHVE 246

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
                      L + +             +
Sbjct: 247 YKSD--SYTKDLDIVKNNKLDEIISKNKEL 274

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 3/58 (5%), Positives = 14/58 (24%)

Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            +A        +  + + ++++    K       L + +             +     
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  100 bits (252), Expect = 2e-24
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G++ALH AAA  N+     LLK G    +Q++    PL  AA  G  +  + L+   A+ 
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           +    D    LP   A    H DIV+ L     
Sbjct: 217 DIT--DHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.1 bits (248), Expect = 8e-24
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T L +AA      +++ L+     V   D  G   LH AA   + D    L+  GA+ 
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           + +  ++    PL  AA  G  +  + L+   A  
Sbjct: 184 DMQ--NNREETPLFLAAREGSYETAKVLLDHFANR 216

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 98.7 bits (247), Expect = 1e-23
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G T LH A +     + Q L++     +  +   G  PL  AA      +++ L+++ AD
Sbjct: 90  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N    D  G   LH AA   + D    L+  GA  
Sbjct: 150 VNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 97.2 bits (243), Expect = 4e-23
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-D 443
           GETALH+AA        + LL+      +QD+ G  PLH A +     + Q L+   A D
Sbjct: 57  GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            + +     G  PL  AA      +++ L+++ A+V
Sbjct: 117 LDAR--MHDGTTPLILAARLAVEGMLEDLINSHADV 150

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 89.4 bits (223), Expect = 2e-20
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 385 GETALHVAAARGNLT-------------LVQSLLKQG-HPVKVQDSAGWLPLHEAANHGH 430
           G T L +A+  G                ++   + QG       D  G   LH AA +  
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69

Query: 431 TDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           +D  + L+ A AD N +  D+ G  PLH A +     + Q L+   A
Sbjct: 70  SDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 114

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 70.6 bits (174), Expect = 7e-14
 Identities = 17/63 (26%), Positives = 23/63 (36%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            ET L +AA  G+    + LL       + D    LP   A    H DIV+ L       
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

Query: 445 NDK 447
           +  
Sbjct: 250 HHH 252

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  100 bits (251), Expect = 8e-24
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           + +    +    G+ T ++  + +    KV+   G      A + G T+ V  L+  GAD
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGAD 65

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N    D  G   LH+A    + D+V+ LV  GA +
Sbjct: 66  INYANVD--GLTALHQACIDDNVDMVKFLVENGANI 99

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  100 bits (251), Expect = 9e-24
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
            K         A + G+   V  LL++G  +   +  G   LH+A    + D+V+ LV  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           GA+ N    D+ GW+PLH AA+ G+ DI + L+S GA V
Sbjct: 96  GANINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.0 bits (245), Expect = 6e-23
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALH A    N+ +V+ L++ G  +   D+ GW+PLH AA+ G+ DI + L+S GA  
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
                +S G  PL  A      +++Q  V+  
Sbjct: 133 GAV--NSEGDTPLDIAEEEAMEELLQNEVNRQ 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 93.3 bits (233), Expect = 2e-21
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALHVAAA+G   +++ L++  + V ++D  GW PLH AA+ G  +  + LV    D 
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
                +  G      A       + +         S
Sbjct: 259 EAV--NKVGQTAFDVADEDILGYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
           +K+ D+            G    ++  V        K     G      A + G T+ V 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVK--FDDGA-VFLAACSSGDTEEVL 57

Query: 471 ALVSAGAEV 479
            L+  GA++
Sbjct: 58  RLLERGADI 66

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH AA  G     + L++    ++  +  G      A       + +         
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291

Query: 445 NDK 447
           ++K
Sbjct: 292 SEK 294

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 98.3 bits (246), Expect = 1e-23
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGH--PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
           G T  H+A + GNL +V+SL  +     +    + G   LH A      ++ Q L+  GA
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
               K  D    +PLH AA+ G   +++ L   G 
Sbjct: 132 SVRIK--DKFNQIPLHRAASVGSLKLIELLCGLGK 164

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.7 bits (242), Expect = 3e-23
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
               LH A        VQ LL  +   +  +D  G +PLH + +    +I   L+S   +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 444 PNDK-VQDSAGWLPLHEAANHGHTDIVQALVS--AGAEV 479
            N     D +GW P H A + G+ ++V++L       ++
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.7 bits (242), Expect = 4e-23
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-AD 443
           G T LH+A  +    + Q L++ G  V+++D    +PLH AA+ G   +++ L   G + 
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA 166

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSA-GAEV 479
            N +  D  GW PL  A   GH D    LV   GAE 
Sbjct: 167 VNWQ--DKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.0 bits (240), Expect = 7e-23
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSA---GWLPLHEAANHGHTDIVQALVS-- 439
           G   LH + +     +   LL +   V + D     GW P H A + G+ ++V++L    
Sbjct: 36  GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              D N     + G   LH A      ++ Q L+  GA V
Sbjct: 96  LKPDLNKI--TNQGVTCLHLAVGKKWFEVSQFLIENGASV 133

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGH-PVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GA 442
            +  LH AA+ G+L L++ L   G   V  QD  GW PL  A   GH D    LV   GA
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           + +    D+ G      A N     + +  ++
Sbjct: 200 EYDLV--DNKGAKAEDVALNE---QVKKFFLN 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGAD 443
           G T LH+A+  G L +V+ L+  G  V  Q+   G   LH A +  + D+V  L+  GAD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            N       G+ P         T I Q L     E 
Sbjct: 177 VNRV--TYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG------HPVKVQDSAGWLPLHEAANHGHTDIVQALV 438
           G T LH+A  +G L  V  L +          +K  +  G   LH A+ HG+  IV+ LV
Sbjct: 78  GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137

Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           S GAD N +   + G   LH A +  + D+V  L+  GA+V
Sbjct: 138 SLGADVNAQEPCN-GRTALHLAVDLQNPDLVSLLLKCGADV 177

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 97.6 bits (244), Expect = 2e-23
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 385 GETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           G++ LH+A         + +++ +      +  Q++    PLH A      +I +AL+ A
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           G DP  +  D  G  PLH A   G    V  L  +     
Sbjct: 68  GCDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 97.6 bits (244), Expect = 2e-23
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            +T LH+A       + ++LL  G   +++D  G  PLH A   G    V  L  +   P
Sbjct: 45  QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104

Query: 445 NDK----VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +        +  G   LH A+ HG+  IV+ LVS GA+V
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 77.2 bits (191), Expect = 3e-16
 Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           E   G TALH+A    N  LV  LLK G  V      G+ P         T I Q L   
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIV 469
             +    + +S              T+  
Sbjct: 207 TLENLQMLPESED--EESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 414 QDSAGWLPLHEAANHGHT----DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV 469
               G   LH A  H       ++++ +    A  N +  ++    PLH A      +I 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIA 61

Query: 470 QALVSAGAEV 479
           +AL+ AG + 
Sbjct: 62  EALLGAGCDP 71

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.6 bits (249), Expect = 5e-23
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G TALH AA   N+ +V+ L+ + G     QD  G  P+  AA  G  ++V  L+  GA 
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                 D+        A  + H +IV        E 
Sbjct: 339 VEAV--DATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 385 GETALHVAAARGNLTLVQSLL--------KQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
             T LH  A+  +    + L+          G  V   D     PL  A       +V  
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS---AGAEV 479
           L+ AGADP     + +    LH+AA +    ++  +++      ++
Sbjct: 185 LMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS---AG 441
             T L +A       LV  L+K G    + + +    LH+AA +    ++  +++     
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTD---IVQALVSAGAEV 479
            D  +   D  G   L   A++   D     + LV  GA+V
Sbjct: 226 GDIEEL--DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 4/94 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
                      GN  L              +    + LH  A  G   I + +     + 
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI 119

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
            D          LH  A++   +  + L+   A+
Sbjct: 120 ID---PRHNRTVLHWIASNSSAEKSEDLIVHEAK 150

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.6 bits (210), Expect = 5e-18
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP---VKVQDSAGWLPLHEAANHGHTD---IVQALV 438
             +ALH AAA  +  ++  +L        ++  D  G   L   A++   D     + LV
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258

Query: 439 SAGADPNDKV------QDSAGWLPLHEAANHGHTDIVQALVS-AGAEV 479
             GA  +         +   G   LH AA   +  IV+ LV   G+  
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 12/95 (12%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
            + +L  A+  G +   ++ L               P  +   +G+  +     +    P
Sbjct: 37  SQHSLLEASYDGYIKRQRNEL---------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIP 87

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +   +    + LH  A  G   I + +      +
Sbjct: 88  TEP--EPESPIKLHTEAA-GSYAITEPITRESVNI 119

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 7/72 (9%), Positives = 18/72 (25%), Gaps = 11/72 (15%)

Query: 408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
                   ++    L EA+  G+    +         N+         P  +   +G+  
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKRQR---------NEL--QHYSLYPNPQGYGNGNDF 75

Query: 468 IVQALVSAGAEV 479
           +     +     
Sbjct: 76  LGDFNHTNLQIP 87

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 92.6 bits (231), Expect = 5e-23
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS 451
            ++  +      L+ +G  +    S     L EAA  G  D V+ L++ GAD   K  D 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAK--DK 55

Query: 452 AGWLPLHEAANHGHTDIVQALVSAGAEV 479
            G  PLH AA +GH ++V+ L+ AGA+V
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADV 83

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.2 bits (222), Expect = 9e-22
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
               L  AA  G    V+ L+  G  V  +D  G  PLH AA +GH ++V+ L+ AGAD 
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
             +  D  G      + ++G+ D+ + L
Sbjct: 84  XAQ--DKFGKTAFDISIDNGNEDLAEIL 109

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 93.1 bits (232), Expect = 8e-22
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 16/111 (14%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG-----HPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
           GETALH+AA   NL     L++        P+  +   G   LH A  + + ++V+AL++
Sbjct: 37  GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96

Query: 440 AGADPNDKVQDSA-----------GWLPLHEAANHGHTDIVQALVSAGAEV 479
            GA  + +   S            G  PL  AA  G  +IV+ L+  GA++
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 90.4 bits (225), Expect = 7e-21
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA----LVSA 440
           GE  L  AA  G+  +V+ L++ G  ++ QDS G   LH      +          L+S 
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180

Query: 441 GADPNDK----VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
               + K    V ++ G  P   A   G+  + Q L+     +
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLK-QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
            E+ L +AA   ++  +  LLK +G  V  + + G   LH AA + + +    L+ A  +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 444 PNDK---VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              +    +   G   LH A  + + ++V+AL++ GA V
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 19/113 (16%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQG-------------HPVKVQDSAGWLPLHEAANHGH 430
            G+TALH+A    N+ LV++LL +G             +        G  PL  AA  G 
Sbjct: 74  EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133

Query: 431 TDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQA----LVSAGAEV 479
            +IV+ L+  GAD   +  DS G   LH      +          L+S     
Sbjct: 134 EEIVRLLIEHGADIRAQ--DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 421 PLHEAANHGHTDIVQA-LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           PL  AA       +   L   G + + +   + G   LH AA + + +    L+ A  E+
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 480 S 480
            
Sbjct: 64  V 64

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 91.1 bits (226), Expect = 3e-21
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
                ++A +     L + +L         D      LH A + GHT+IV+ L+  G   
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           NDK  D AGW PLH AA+ G  +IV+AL+  GA V+
Sbjct: 67  NDK--DDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.5 bits (209), Expect = 6e-19
 Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             TALH A + G+  +V+ LL+ G PV  +D AGW PLH AA+ G  +IV+AL+  GA  
Sbjct: 40  SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N    +  G  PLH AA+    +I   L+  GA   
Sbjct: 100 NAV--NQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 82.6 bits (204), Expect = 4e-18
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G + LH+AA+ G   +V++LL +G  V   +  G  PLH AA+    +I   L+  GA+P
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           + K  D      +H AA  G+  +V  L+   A  +
Sbjct: 133 DAK--DHYDATAMHRAAAKGNLKMVHILLFYKASTN 166

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH AA++    +   LL+ G     +D      +H AA  G+  +V  L+   A  
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           N +  D+ G  PLH A +    +  + LV+ GA + 
Sbjct: 166 NIQ--DTEGNTPLHLACDEERVEEAKFLVTQGASIY 199

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             TA+H AAA+GNL +V  LL       +QD+ G  PLH A +    +  + LV+ GA  
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
             +  +     PL  A   G   ++   ++ G E 
Sbjct: 199 YIE--NKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+A     +   + L+ QG  + +++     PL  A   G   ++   ++ G + 
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

Query: 445 N 445
           +
Sbjct: 230 S 230

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 86.7 bits (215), Expect = 5e-20
 Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 15/108 (13%)

Query: 385 GETALHVAAARGNLT------LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA-- 436
           G T        G         L +  L++G  +        + + +   +   D  +   
Sbjct: 75  GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP 134

Query: 437 -----LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                   +G      ++D  G   L           ++ +     + 
Sbjct: 135 LYKLIFSQSGLQLL--IKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 80.9 bits (200), Expect = 5e-18
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 11/104 (10%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKV---QDSAGWLPLHEAANHGHTDIVQALVSAG 441
               +  AA  G       L ++G+  K    + +  +  L    +     I   L++ G
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDI------VQALVSAGAEV 479
           AD     +   G          G  DI       +  +  GA++
Sbjct: 66  ADIK--SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI 107

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 15/108 (13%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI------VQALV 438
               L          +   L+ +G  +K +   G          G  DI       +  +
Sbjct: 42  LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101

Query: 439 SAGADPNDKVQDSAGWLPLHEAANHGHTDIVQA-------LVSAGAEV 479
             GAD           + + +   +   D  +           +G ++
Sbjct: 102 EKGADIT--ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 7/71 (9%)

Query: 384 RGETALHVAAARGNLT------LVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
             +  +        +       L + +  Q G  + ++D  G   L           ++ 
Sbjct: 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172

Query: 437 LVSAGADPNDK 447
           +       N K
Sbjct: 173 MEDYIKKYNLK 183

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 88.5 bits (219), Expect = 3e-19
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA--GWLPLHEAANHGHTDIVQALVSAG 441
               A  +AA  G+L ++  L +      +       +     AA +GH  ++  L    
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186

Query: 442 ADPNDKVQDSAGWLPLHEAA-NHGHTDIVQALVSAGAEVS 480
                 +  +  +     AA   GH +++  L+     ++
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 88.1 bits (218), Expect = 3e-19
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 321 LIKRNDKDSNLNLYNIESITISRNRLGA----QEVRKLLSLLNADLLVHLNLSATLETPT 376
           L +     + L+L  +         L      ++VR+LL L  A    +     +     
Sbjct: 29  LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD---- 84

Query: 377 TSLLEKPRGETALHVAAARGN---LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI 433
            +  +  + E    VAA  G    L  +  LL     VKV  +  +     AA +GH  +
Sbjct: 85  -AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143

Query: 434 VQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +  L          +  +  +     AA +GH  ++  L       
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.2 bits (169), Expect = 6e-13
 Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 13/101 (12%)

Query: 385 GETALHVAAARGNLTLVQSL--------LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
           G   L     R +  L+  +        +K   P           L  A   G+      
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           L+S  +       +       +     G  D+    +    
Sbjct: 338 LLSIPSVLALTKAN-----NYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 19/103 (18%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL------- 437
              A  ++   G   LV          K +   G+  L          ++  +       
Sbjct: 254 MHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 438 -VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            + A A              L  A   G+      L+S  + +
Sbjct: 305 GIKALAPTA--TIPGDANELLRLALRLGNQGACALLLSIPSVL 345

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 83.7 bits (207), Expect = 2e-18
 Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 25/119 (21%)

Query: 385 GETALHVAAAR---GNLTLVQSLLKQGH-----------PVKVQDSAGWLPLHEAANHGH 430
           G+T L  A      G    +  LL+                  +   G   LH A     
Sbjct: 43  GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102

Query: 431 TDIVQALVSAGADPNDKVQDSA-----------GWLPLHEAANHGHTDIVQALVSAGAE 478
              V+ LV  GAD + +                G LPL  AA     D+V  L+    +
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 83.3 bits (206), Expect = 3e-18
 Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 21/123 (17%)

Query: 374 TPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGH---PVKVQDSAGWLPLHEAANH-- 428
                      GE  L +AA      +V  LL+  H    ++  DS G   LH       
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 429 --------------GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
                         G   +   L          + +  G  PL  AA  G  +I + ++ 
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 475 AGA 477
              
Sbjct: 243 REF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.8 bits (197), Expect = 5e-17
 Identities = 26/126 (20%), Positives = 37/126 (29%), Gaps = 30/126 (23%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQG-------------HPVKVQDSAGWLPLHEAANHGH 430
           +G +ALH+A  + +L  V+ L++ G                      G LPL  AA    
Sbjct: 89  QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

Query: 431 TDIVQALVSAGADPNDK-VQDSAGWLPLHEAANH----------------GHTDIVQALV 473
            D+V  L+     P      DS G   LH                     G   +   L 
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208

Query: 474 SAGAEV 479
                 
Sbjct: 209 PTVQLE 214

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 78.7 bits (194), Expect = 1e-16
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 20/115 (17%)

Query: 385 GETALHVAAARGNLTLVQSLLK--------QGHPVKVQDSAGWLPLHEAA---NHGHTDI 433
               L    +RG    +  LL+               + S G   L +A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 434 VQALVSAGADPNDKVQ---------DSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +  L+    D  +               G   LH A        V+ LV  GA+V
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 12/63 (19%), Positives = 22/63 (34%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             +AL +    G L +   L       ++ +  G  PL  AA  G  +I + ++      
Sbjct: 188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

Query: 445 NDK 447
              
Sbjct: 248 AAA 250

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 83.7 bits (207), Expect = 3e-18
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQG--------------HPVKVQDSAGWLPLHEAANHG 429
           +G+TALH+A  R N+TLV  L++ G                 +     G LPL  AA   
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

Query: 430 HTDIVQALVSAGADPNDK-VQDSAGWLPLHEAANHGHTDIVQAL 472
              IV+ L+     P D   +DS G   LH         +    
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 80.6 bits (199), Expect = 3e-17
 Identities = 26/120 (21%), Positives = 33/120 (27%), Gaps = 26/120 (21%)

Query: 385 GETALHVAAA---RGNLTLVQSLLKQGH-----------PVKVQDSAGWLPLHEAANHGH 430
           G+T L  A      G    +  LL                       G   LH A    +
Sbjct: 54  GKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113

Query: 431 TDIVQALVSAGADPNDKVQDSA------------GWLPLHEAANHGHTDIVQALVSAGAE 478
             +V  LV  GAD                     G LPL  AA      IV+ L+    +
Sbjct: 114 MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 80.2 bits (198), Expect = 4e-17
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 17/111 (15%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHP---VKVQDSAGWLPLHEAANHGHTDIVQA---- 436
            GE  L +AA    L +V+ LL+       +  +DS G   LH         +       
Sbjct: 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206

Query: 437 -----LVSAGADPNDK-----VQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
                ++  GA  +       + +  G  PL  AA+ G   ++  ++    
Sbjct: 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 20/120 (16%)

Query: 381 EKPRGETALHVAAARGNLTLVQSLL-------KQGHPVKVQDSA-GWLPLHEA---ANHG 429
            +     ++  A A+ N   ++SLL       K+    + +D   G   L +A    ++G
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68

Query: 430 HTDIVQALVSAGADP---------NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
             D +  L+               +       G   LH A    +  +V  LV  GA+V 
Sbjct: 69  QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 25/100 (25%)

Query: 384 RGETALHVAAARGN----------------LTLVQSLLKQGHPVKVQDSAGWLPLHEAAN 427
            G T LH      +                L L   L       ++ +  G  PL  AA+
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242

Query: 428 HGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTD 467
            G   ++  ++                   H AA+H H  
Sbjct: 243 SGKIGVLAYILQREIH---------EPECRHAAAHHHHHH 273

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 81.0 bits (200), Expect = 2e-17
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP---VKVQDSAGWLPLHEAANHGH---------TD 432
           GE  L +AA      +V  L + GH    ++ QDS G   LH                T 
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 433 IVQALVSAGADPNDK-----VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           +   L+   A          + ++ G  PL  AA  G   I Q ++      
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.9 bits (192), Expect = 2e-16
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 28/122 (22%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQG--------------HPVKVQDSAGWLPLHEAANHG 429
           RG+TALH+A  R     V+ L+++G                       G LPL  AA   
Sbjct: 92  RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151

Query: 430 HTDIVQALVSAG---ADPNDKVQDSAGWLPLHEAANHGH---------TDIVQALVSAGA 477
              IV  L   G   AD     QDS G   LH                T +   L+   A
Sbjct: 152 QPHIVHYLTENGHKQADLR--RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209

Query: 478 EV 479
           ++
Sbjct: 210 KL 211

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.1 bits (190), Expect = 4e-16
 Identities = 28/120 (23%), Positives = 37/120 (30%), Gaps = 26/120 (21%)

Query: 385 GETALHVAA---ARGNLTLVQSLLKQGH-----------PVKVQDSAGWLPLHEAANHGH 430
           G+T L  A    + G    +  LL               P +     G   LH A     
Sbjct: 46  GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 431 TDIVQALVSAGADPNDKVQDSA------------GWLPLHEAANHGHTDIVQALVSAGAE 478
              V+ LV  GAD + + +               G LPL  AA      IV  L   G +
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 20/118 (16%)

Query: 382 KPRGETALHVAAARGNLT----LVQSLLKQG----HPVKVQDSAGWLPLHEAA---NHGH 430
           K      L    +RG+      L+  LL            + S G   L +A    + G 
Sbjct: 2   KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 431 TDIVQALVSAGADP---------NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            D +  L+                 +     G   LH A        V+ LV  GA+V
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 16/83 (19%)

Query: 384 RGETALHVAAARGN---------LTLVQSLLKQG-------HPVKVQDSAGWLPLHEAAN 427
           RG T LH   A  +           +   LL +        +   + ++ G  PL  AA 
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234

Query: 428 HGHTDIVQALVSAGADPNDKVQD 450
            G   I Q ++            
Sbjct: 235 TGKIGIFQHIIRREIADAAAHHH 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 383 PRGETALHVAAARGN---LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
              ETALH+A    +   L +V  L++    +  Q   G   LH      + + ++ L+ 
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
             A     + + +G  PL  A    H    + L  A
Sbjct: 227 GKASIE--IANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 405 LKQGHPVKVQDSAGWLPLHEA---ANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461
           L +  P+          LH A    +     IV  LV    + +   Q   G   LH   
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD--KQTGKGSTALHYCC 213

Query: 462 NHGHTDIVQALVSAGAEVS 480
              + + ++ L+   A + 
Sbjct: 214 LTDNAECLKLLLRGKASIE 232

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 385 GETALHVAAARGN---LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
            E  LH+A    N   L LV  +++ G  +  + + G   LH AA +   D ++ L+   
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
           A       + AG   L  A    H +  + L  A
Sbjct: 250 ALVG--TVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.7 bits (126), Expect = 8e-08
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 390 HVAAARGNLTLVQSLLKQG------HPVKVQDSAGWLPLHEA---ANHGHTDIVQALVSA 440
             A    +L  V      G       P     +   L LH A   AN     +V  ++  
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
           G   +   + + G   LH AA +   D ++ L+   A V 
Sbjct: 216 GGHLD--AKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 19/61 (31%), Positives = 24/61 (39%)

Query: 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
             G TALH AA       ++ LLK    V   + AG   L  A    H +  + L  A A
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283

Query: 443 D 443
            
Sbjct: 284 G 284

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 69.2 bits (169), Expect = 3e-13
 Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 20/238 (8%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
           AS Y   A  +K+ KQ   A D + +  E   + R+   A K   + G + +  ++  E 
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95

Query: 95  VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS----DLCKD 150
           VQ   EKA  +  +N         +    KL +  D L  A        +     +  + 
Sbjct: 96  VQY-IEKASVMYVENGTPDTAAMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERLRQ 153

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFE 208
            A      ++     ++++ A     KE  ++    N+P   K       +   +   + 
Sbjct: 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YV 212

Query: 209 LVVSTHEKALDLARQNKDD--KLIRTVMRSMK-------KLYKKHDKFTELEQIKTEL 257
                  ++  +   +  +    +  ++++             +    T ++    +L
Sbjct: 213 AAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRSPLVTYMDNDYAKL 270

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 68.4 bits (167), Expect = 7e-13
 Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 8/177 (4%)

Query: 33  CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEK 90
               A  +       KD ++   AV Y  K   ++        A   L   G L E  + 
Sbjct: 72  LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLD- 130

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLS----SD 146
                   +++A  +    +  +    ++    +L  +    D A + L    S     +
Sbjct: 131 -LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189

Query: 147 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203
                    I+          Y  A     +   +   +  E    L ++   Y+ Q
Sbjct: 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQ 246

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 69.0 bits (168), Expect = 7e-13
 Identities = 36/117 (30%), Positives = 44/117 (37%), Gaps = 3/117 (2%)

Query: 359 NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG 418
              L    +  A                T L  A A  +L   + LL+ G  V   DSAG
Sbjct: 210 PPSLPTMADALAHGADVNWVN-GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG 268

Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
             PLH A   GHT +    +  GAD     +DS G  PL  A    + DIV  L  A
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLG--ARDSEGRDPLTIAMETANADIVTLLRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 369 SATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA--GWLPLHEAA 426
            +  E P+  L     G      +    +L  +   L  G  V   +       PL +A 
Sbjct: 184 RSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT 243

Query: 427 NHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
                   + L+  GA+ N    DSAG  PLH A   GHT +    +  GA++ 
Sbjct: 244 AANSLLACEFLLQNGANVN--QADSAGRGPLHHATILGHTGLACLFLKRGADLG 295

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 356 SLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD 415
           SLL  + L+     A +    +       G   LH A   G+  L    LK+G  +  +D
Sbjct: 247 SLLACEFLLQN--GANVNQADS------AGRGPLHHATILGHTGLACLFLKRGADLGARD 298

Query: 416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG 453
           S G  PL  A    + DIV  L  A     +  Q  AG
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 68.7 bits (168), Expect = 8e-13
 Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 47/238 (19%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PEAVKTLGEIGDLYELQEK 90
            + A  +  ++++Y   KQ   ++DY  +   ++  +       ++        +   ++
Sbjct: 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
            +E   S  +KA  +A   K  +L+                                   
Sbjct: 200 -YEDAISHFQKAYSMAEAEKQPQLM----------------------------------- 223

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRL--HARNFPEAVKTLGEIGDLYELQEKPFE 208
                 ++        QY  A+ YF + + +   +   P   +    I  ++    K  +
Sbjct: 224 -GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-ID 281

Query: 209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266
                H K +  +++   D +  +    +K LY       + E I+     LE K+  
Sbjct: 282 KAHEYHSKGMAYSQKAG-DVIYLSEFEFLKSLYLSGP---DEEAIQGFFDFLESKMLY 335

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 12/172 (6%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRL--HARNFPEAVKTLGEIGDLYELQEKS 91
           + +     ++        QY  A+ YF + + +   +   P   +    I  ++    K 
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK- 279

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
            +     H K +  +++  D  +  +    +K LY    + ++       + S  L  DL
Sbjct: 280 IDKAHEYHSKGMAYSQKAGD-VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338

Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ 203
               I +A+ Y + K +  A  YF K          +  + +     LYE++
Sbjct: 339 EDFAIDVAKYYHERKNFQKASAYFLKVE--------QVRQLIQGGVSLYEIE 382

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQ 88
                L  C+   A  + D KQY  A+ +F K   +           +TL  IG     Q
Sbjct: 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237

Query: 89  EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS------ELHTV 142
            + +E      ++A+ +  ++     +      I +++ K   +D A             
Sbjct: 238 SQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296

Query: 143 LSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL 202
               +         SL  +  D +      D+   +       + +      ++   Y  
Sbjct: 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-----MLYADLEDFAIDVAKYYHE 351

Query: 203 QEKPFELVVSTHEKALDLARQ 223
           ++  F+   +   K   + + 
Sbjct: 352 RKN-FQKASAYFLKVEQVRQL 371

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 27/169 (15%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA-VKTLGEIGDLYELQEKSF 92
           + +A   +++A +Y  +    +AV++F K  ++     P+   K L  +        +  
Sbjct: 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-T 277

Query: 93  EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
           +      E+ LD        K  + +   ++ +YK+  +       L      +L   + 
Sbjct: 278 QKAFQFIEEGLDHITAR-SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIE 336

Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
           +C  S A  ++ +  +  A  ++ K L        +A + + +   LY 
Sbjct: 337 ACARSAAAVFESSCHFEQAAAFYRKVL--------KAQEDILKGECLYA 377

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 19/225 (8%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRL---HARNFPEAVKTLGEIGDLYELQEKS 91
           + A  +  +A+ Y   KQ ++++ +  + L +   H       +++L  I   Y+  +  
Sbjct: 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH- 197

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLS---SDLC 148
           ++      E AL+LA   ++D+ I   + +I   Y +  +   A              + 
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKEL----RLHARNFPEAVKTLGEIGDLYELQE 204
             L      L+ T     Q   A  +  + L        + + E    L  +      + 
Sbjct: 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317

Query: 205 KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
           K            L    +      I    RS   +++    F +
Sbjct: 318 K--------IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 16/198 (8%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
                    +A  Y D K Y+ A+ +    L L     N      +L  I + Y+     
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD- 237

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS------ELHTVLSS 145
            ++     +KA  ++R+   D L +  +  +     K      A        +  T  S 
Sbjct: 238 DQMAVEHFQKAAKVSREKVPDLLPKV-LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296

Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
              K+L     ++ +   D ++ +  + YF K+                    ++E    
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-----NLHAYIEACARSAAAVFESSCH 351

Query: 206 PFELVVSTHEKALDLARQ 223
            FE   + + K L     
Sbjct: 352 -FEQAAAFYRKVLKAQED 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 40  YISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQS 97
                    D K+Y  A+ Y+ +  +      +  E  +   ++ + Y   +++   +  
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163

Query: 98  THEKALDLARQNKDDKL-IRTVMRSIKKLYKKHDNLDSACSELHTVL----SSDLCKDLA 152
              +ALD+ + +    +     +  I   Y    + D A   L   L         + +A
Sbjct: 164 -ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222

Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA-VKTLGEIGDLYELQEKPFELVV 211
              +++A +Y  +    +AV++F K  ++     P+   K L  +        +  +   
Sbjct: 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-TQKAF 281

Query: 212 STHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK 263
              E+ LD        K  + +   ++ +YK+     +  +I   L   E+K
Sbjct: 282 QFIEEGLDHITAR-SHKFYKELFLFLQAVYKETV---DERKIHDLLSYFEKK 329

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 33/243 (13%), Positives = 74/243 (30%), Gaps = 31/243 (12%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKS 91
              A    +L  T K   +++ A     +   L     +     + L  +G++Y  + K 
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182

Query: 92  FEIVQST----------------HEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSA 135
                                  +++ L L R   D         ++   Y    +  +A
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242

Query: 136 CSELHTVLSSDLCKDL------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NF 186
                  L   + ++            +L  ++    Q+  A +++ + L L        
Sbjct: 243 IEHHQERL--RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300

Query: 187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK 246
            EA ++   +G+ Y L  + F   +  H + L +A++  D         S+   +     
Sbjct: 301 VEA-QSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358

Query: 247 FTE 249
              
Sbjct: 359 HER 361

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 31/214 (14%)

Query: 35  DLASCYISLAQTYKDNKQYNL-----------------AVDYFNKELRLHAR--NFPEAV 75
                  +L   Y    ++                   AV+++ + L+L     +     
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223

Query: 76  KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSA 135
           +  G +G+ Y L    F+     H++ L +AR+  D    R    ++   +      + A
Sbjct: 224 RACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282

Query: 136 CSELHTVLSSDLCKDL------ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFP 187
                  L   L  +L      A    SL  TY    ++N A++Y N+ L +     +  
Sbjct: 283 AEHYKRTL--ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340

Query: 188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA 221
              +    +G+ +       E  +   E+ L LA
Sbjct: 341 GEARACWSLGNAHSAIGG-HERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 25/239 (10%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
             +        +   +       V +F   ++    +         ++G+ Y      + 
Sbjct: 45  SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD-YN 103

Query: 94  IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSA--CSELHTVLSSDL--CK 149
                H+  L LA+   D         ++    K     D A  C E H  L+  L    
Sbjct: 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163

Query: 150 DLASCYISLAQTYKDNKQYNL-----------------AVDYFNKELRLHAR--NFPEAV 190
                  +L   Y    ++                   AV+++ + L+L     +     
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223

Query: 191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
           +  G +G+ Y L    F+  +  H++ L +AR+  D    R    ++   +    +F +
Sbjct: 224 RACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 27/201 (13%), Positives = 65/201 (32%), Gaps = 11/201 (5%)

Query: 56  AVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK 113
           A DY   E +  A   +   A      +G +Y   ++ F+  +++ +     A+++ D  
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR-FDEARASFQALQQQAQKSGDHT 63

Query: 114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLS-----SDLCKDLASCYISLAQTYKDNKQY 168
                +  +  + +   N D+A               +     ++    +A         
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 169 NLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD 226
             A   + K L    +  +          +GDL + ++           +A D+  + +D
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRARDIFAELED 182

Query: 227 DKLIRTVMRSMKKLYKKHDKF 247
            + +  +M  +  L   H   
Sbjct: 183 SEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 12/160 (7%)

Query: 99  HEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL------A 152
                                  +  +Y   D  D A +    +      +         
Sbjct: 9   ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ--QQAQKSGDHTAEH 66

Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFEL 209
                +    +    ++ A   F +E  L A    +   A     E+  +          
Sbjct: 67  RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAG 125

Query: 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
               +EK+L  A+Q  D   I    R +  L ++     E
Sbjct: 126 ARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKSF 92
             ++    +A           A   + K L    +  +          +GDL + ++   
Sbjct: 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-L 163

Query: 93  EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN 131
              Q    +A D+  + +D + +  +M  +  L   H +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 40/250 (16%), Positives = 77/250 (30%), Gaps = 43/250 (17%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKSF 92
                + +L  T+     +  AV    + L +     +     +    +G+ Y    + F
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-F 243

Query: 93  EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
           E     ++K L LARQ KD  +                                     A
Sbjct: 244 ETASEYYKKTLLLARQLKDRAVE------------------------------------A 267

Query: 153 SCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
               SL  TY   + Y  A+DY  K   +     +     +    +G+ Y       +  
Sbjct: 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-HDQA 326

Query: 211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-DKFTELEQIKTELKSLEEKLDLNSS 269
           +   EK L+++R+  D     T   ++  L       ++    I +E   ++  L+    
Sbjct: 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRP 386

Query: 270 SDEEDTILED 279
                  +E+
Sbjct: 387 KLGRRHSMEN 396

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 32/244 (13%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFE 93
           +          +    +      V +F   +++   +         ++G+ Y      + 
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YA 64

Query: 94  IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL-- 151
                H   L LAR   D         ++    K   N D A       L  D+ ++L  
Sbjct: 65  KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL--DISRELND 122

Query: 152 ----ASCYISLAQTYKD--------------------NKQYNLAVDYFNKELRLHAR--N 185
               A    +L   Y                            AVD++ + L L     +
Sbjct: 123 KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD 182

Query: 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD 245
                +  G +G+ + L    F   V  HE+ L +A++  D    R    ++   Y    
Sbjct: 183 RAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241

Query: 246 KFTE 249
           +F  
Sbjct: 242 EFET 245

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 33/173 (19%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSF 92
             A    SL  TY   + Y  A+DY  K   +     +     +    +G+ Y       
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-H 323

Query: 93  EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
           +      EK L+++R+  D     T                                +L+
Sbjct: 324 DQAMHFAEKHLEISREVGDKSGELTARL-----------------------------NLS 354

Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
              + L  +Y  N          +  L            ++  +  +    EK
Sbjct: 355 DLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRR-HSMENMELMKLTPEK 406

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 30/221 (13%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
           K L++ Y  L   Y     Y  A++Y + +L L     +     K  G +G+  ++    
Sbjct: 40  KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN- 98

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-- 149
           F+      ++ LD++R+  D       + ++  +Y              T    +  +  
Sbjct: 99  FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158

Query: 150 ----------------------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--N 185
                                      + +L  T+     +  AV    + L +     +
Sbjct: 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218

Query: 186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD 226
                +    +G+ Y    + FE     ++K L LARQ KD
Sbjct: 219 KAAERRAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKD 258

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 32/245 (13%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKS 91
              A    +L  T K    ++ A+    +  ++     +     + L  +G++Y  + KS
Sbjct: 80  LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139

Query: 92  FEIVQST-------------------HEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL 132
           F                         +E+ L L     D         ++   +    N 
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199

Query: 133 DSACSELHTVLSSDLCKDL------ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--AR 184
             A       L   + K+          Y +L   Y    ++  A +Y+ K L L    +
Sbjct: 200 RDAVIAHEQRL--LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257

Query: 185 NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244
           +     ++   +G+ Y L +  +E  +  H K L +A++ KD         S+   Y   
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316

Query: 245 DKFTE 249
               +
Sbjct: 317 GNHDQ 321

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 37/203 (18%), Positives = 68/203 (33%), Gaps = 14/203 (6%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
                   +             AVD + + L L     +     +  G +G+ + L    
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN- 198

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
           F      HE+ L +A++  D    R    ++   Y      ++A       L   L + L
Sbjct: 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL--LLARQL 256

Query: 152 ------ASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQ 203
                 A    SL  TY   + Y  A+DY  K   +    ++     +    +G+ Y   
Sbjct: 257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316

Query: 204 EKPFELVVSTHEKALDLARQNKD 226
               +  +   EK L+++R+  D
Sbjct: 317 GN-HDQAMHFAEKHLEISREVGD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 1/79 (1%)

Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
                   +    +      V +F   +++   +         ++G+ Y      +   +
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKAL 63

Query: 212 STHEKALDLARQNKDDKLI 230
             H   L LAR   D    
Sbjct: 64  EYHHHDLTLARTIGDQLGE 82

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 28/175 (16%)

Query: 77  TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC 136
            L   G+             S  E A+ +  ++     +  +   +   Y    +   A 
Sbjct: 7   ELALEGERLCKSGD-CRAGVSFFEAAVQVGTEDLKT--LSAIYSQLGNAYFYLHDYAKAL 63

Query: 137 SELHTVL----SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAV 190
              H  L    +       A    +L  T K    ++ A+    +  ++     +     
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 191 KTLGEIGDLYELQEKPFELV-------------------VSTHEKALDLARQNKD 226
           + L  +G++Y  + K F                      V  +E+ L L     D
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 9/167 (5%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
            L +     Y+ L   +       LA +Y      L           L E+G +   +  
Sbjct: 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF----QYDPLLLNELGVVAFNKSD 490

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK-KLYKKHDNLDSACSELHTVLSSDLCK 149
               +    + AL L ++ + ++       +     Y+K    D+A   L+  L   L  
Sbjct: 491 MQTAINH-FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL--LLST 547

Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196
           + A+ + ++A  Y   K   LA+ + ++ L +   N   A   L   
Sbjct: 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 36/240 (15%), Positives = 64/240 (26%), Gaps = 36/240 (15%)

Query: 42  SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEK 101
                    +QY  A     K L +     P     L ++       +         + +
Sbjct: 89  LWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQV--YCCTGD---------YAR 135

Query: 102 ALDLARQNKDDKLIRTV----MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL------ 151
           A  L  +                 + KLY     L+                 L      
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195

Query: 152 ----ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF 207
               AS      Q Y +   ++ A + + + L +      EA   L     L   +E   
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDL 254

Query: 208 ELVVSTHEKALDLARQNK-DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL 266
            L        L+ +  +K D   +R++           D+    E   + +  LE+  DL
Sbjct: 255 VL-------KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL 307

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 52/198 (26%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
           D   + A  ++++   Y    + + A  YF+K   +    F  A              E 
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHS--FAIEGE- 422

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
                   H++A+                      Y                 ++ L + 
Sbjct: 423 --------HDQAI--------------------SAYTT---------------AARLFQG 439

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
               Y+ L   +       LA +Y      L           L E+G +   +    +  
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF----QYDPLLLNELGVVAFNKSD-MQTA 494

Query: 211 VSTHEKALDLARQNKDDK 228
           ++  + AL L ++ + ++
Sbjct: 495 INHFQNALLLVKKTQSNE 512

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 362 LLVHLNLSATLETPTTSLLEKPRGETALHVAAA---RGNLTLVQSLLKQGHPVKVQDSAG 418
           +L           P      +   E  LH+A     + +L LV  +++ G  +  + + G
Sbjct: 148 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 207

Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA 475
              LH AA +   D ++ L+   A       + AG   L  A    H +  + L  A
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALDIARKKHHKECEELLEQA 262

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 389 LHVAAARGNLTLVQSLLKQGH------PVKVQDSAGWLPLHEA---ANHGHTDIVQALVS 439
           L  A    +L  V      G       P     +   L LH A   AN     +V  ++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
            G   +   + + G   LH AA +   D ++ L+   A V 
Sbjct: 196 NGGHLD--AKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 13/208 (6%)

Query: 267 NSSSDEEDTILEDSPNIGDDINLEELSD----LNSADEESKEDQDKRTNRKRAPRSHFLI 322
           N+ +D+ D           D+  + LS     + +       D +++   +   +     
Sbjct: 14  NNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFP 73

Query: 323 KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK 382
           +  +  ++LN  +    +   +    Q+     SLL        N    L  P       
Sbjct: 74  EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV-----D 128

Query: 383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH---TDIVQALVS 439
             G T LH   +  NL LV+ L+K G      D+ G   L +A    +   +   +AL+ 
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTD 467
                   ++DS     LH         
Sbjct: 189 YLYPCLI-LEDSMNRTILHHIIITSGMT 215

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 2/116 (1%)

Query: 346 LGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLL 405
                     +    D+L+   +        +   EK       +       L  +    
Sbjct: 211 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW 270

Query: 406 KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461
              + +  QDS G   L+ AA  G+  IV AL+  GADP   + + +G  P+   A
Sbjct: 271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 385 GETALHVAAARGNLT------------LVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTD 432
             T LH       +T            L+  ++K+ +      +          N    D
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260

Query: 433 IVQALVSAGADPNDKV--QDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
            +   +       + +  QDS G   L+ AA  G+  IV AL+  GA+ 
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 14/180 (7%)

Query: 32  LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
           L K      + +   Y       LA  +F++ L +     P     + E+G +     + 
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFV---MHEVGVVAFQNGEW 209

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKL---YKKHDNLDSACSELHTVLSSDLC 148
               +     AL+  +   ++  +      +  L    +K      A       L   L 
Sbjct: 210 KTAEKW-FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL--VLI 266

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
              AS Y ++   +     +  AVDYF+  L L  R+   +V  LG      E+     E
Sbjct: 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHC---IEMYIGDSE 322

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 35/222 (15%), Positives = 70/222 (31%), Gaps = 23/222 (10%)

Query: 32  LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
           L K     +I+   ++    +++ A+  +    +L           +  IG  Y L   S
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNS 175

Query: 92  FEIVQSTHEKALDLARQNKDDKLIR----TVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
               +    +AL +     +D  +      V     +          A  ++  + +   
Sbjct: 176 KLAERF-FSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231

Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPF 207
                    +L    +  K+Y  A+DY  + L L     P+   T   IG ++ L     
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI----PQNASTYSAIGYIHSLMGNFE 287

Query: 208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
             V   H  AL L R +         +  +    + +   +E
Sbjct: 288 NAVDYFH-TALGLRRDDTF------SVTMLGHCIEMYIGDSE 322

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 42/197 (21%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKS 91
                 + +L  T+     +  AV    + L +     +          +G+ Y    + 
Sbjct: 6   AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE- 64

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
           FE     ++K L LARQ KD  +                                     
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVE------------------------------------ 88

Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFEL 209
           A    SL  TY   + Y  A+DY  K L +     +     +    +G+ Y       + 
Sbjct: 89  AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQ 147

Query: 210 VVSTHEKALDLARQNKD 226
            +   EK L+++R+  D
Sbjct: 148 AMHFAEKHLEISREVGD 164

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKPFEL 209
              Y +L   Y    ++  A +Y+ K L L    ++     ++   +G+ Y L +  +E 
Sbjct: 49  RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEK 107

Query: 210 VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK---KHDK 246
            +  H K L +A++ KD         S+   Y     HD+
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 20/164 (12%)

Query: 32  LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
              +L      LA  +    QY  A  YF KE                  G+    Q K 
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKC 387

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
            +       + + +   N+  +    +   ++K+ K   + + A SE             
Sbjct: 388 EDKAIHHFIEGVKI---NQKSREKEKMKDKLQKIAKMRLSKNGADSE------------- 431

Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE 195
                 LA   + N++   A +   + L       P A    GE
Sbjct: 432 --ALHVLAFLQELNEKMQQADEDSERGLES-GSLIPSASSWNGE 472

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 35/230 (15%), Positives = 69/230 (30%), Gaps = 19/230 (8%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
             C     +      Q   A   F K L       PE    L       +    S   + 
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAID 196

Query: 97  STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
               +A+ L   N+  K++  +   + K+ ++ +        +   L       +     
Sbjct: 197 P-LRQAIRLNPDNQYLKVLLAL--KLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLR 251

Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216
           S A+ Y+   + + A++   K L       P       +IG  Y  +          + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYI----PNNAYLHCQIGCCYRAKVFQVM-----NLR 302

Query: 217 ALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE----LEQIKTELKSLEE 262
              +  + K  +LI   +  +KK  + +D        L  +       EE
Sbjct: 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 14/165 (8%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
           +     LA  YK N+ Y+ A  ++ + L+      P  V  L    ++   + +  + ++
Sbjct: 54  SKLATELALAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVCRGQEKDALR 109

Query: 97  STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
             +EK L L     D+      + +    Y   +         +  LSS     +     
Sbjct: 110 -MYEKILQL---EADNLAANIFLGNY--YYLTAEQEKKKLETDYKKLSSP--TKMQYARY 161

Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
               +     +Y  A +   K +        EA KTL +I  + +
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKILRIEK 204

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 35/181 (19%)

Query: 40  YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTH 99
            +       +  Q   AV YF + + L+                                
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----------------------------- 37

Query: 100 EKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA 159
            +       +K+ ++   +   +   YKK+ N D A      +L      +   C  + A
Sbjct: 38  TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACA 95

Query: 160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD 219
           +      Q   A+  + K L+L      + +     +G+ Y L  +  +  + T  K L 
Sbjct: 96  EMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

Query: 220 L 220
            
Sbjct: 152 S 152

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 28/255 (10%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEI 94
           A   +  A  Y+  K+ NLA D F K       A N  EA  T  E    ++    S   
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 95  VQSTHEKALDLARQNKDDKLIRTVMRSI-KKLYKKHDNLDSACSELHTVLS----SDLCK 149
           V S  E A+ +       +        + + L     +   A                  
Sbjct: 97  VDS-LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155

Query: 150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PEAVKTLGEIGDLYELQEKP 206
               C+I  A     + QY  A D ++K ++    N            + G         
Sbjct: 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215

Query: 207 FELVVSTHEKALDLAR---QNKDDKLIRTVMRSMK--------KLYKKHDKFTELEQIKT 255
                 T ++          +++   +++++ ++         +  K+ D F  L++ K 
Sbjct: 216 -VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274

Query: 256 EL-----KSLEEKLD 265
            +     +S++++ D
Sbjct: 275 TILNKIKESIQQQED 289

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 26/218 (11%), Positives = 64/218 (29%), Gaps = 8/218 (3%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGEIGDLYELQEKSFE 93
           +    +          K+Y    +    EL+    +   +           Y L++  +E
Sbjct: 73  ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE 132

Query: 94  IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLS-----SDLC 148
                 +K L+      D      +  +I  +Y ++  L         +L       D  
Sbjct: 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKP 206
           +       + A+    + +Y  ++   NK  E+     +     +   + G+     E  
Sbjct: 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE 252

Query: 207 FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH 244
              +   ++KA       +       ++  + +L   H
Sbjct: 253 EAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHH 290

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNK--ELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
                + A+    + +Y  ++   NK  E+     +     +   + G+     E     
Sbjct: 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255

Query: 95  VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN 131
           ++  ++KA       +       ++  I +L   H +
Sbjct: 256 IEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHHH 292

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 82/500 (16%), Positives = 172/500 (34%), Gaps = 130/500 (26%)

Query: 26  TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 85
           T ++ D+C             YK   + +  + +    L L   N PE V  L  +  L 
Sbjct: 164 TWVALDVCLS-----------YKVQCKMDFKIFW----LNLKNCNSPETV--LEMLQKLL 206

Query: 86  ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN----LDSACSELHT 141
              + ++   +S H   + L   +   +L R +        K ++N    L +  +    
Sbjct: 207 YQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKS------KPYENCLLVLLNVQNA--K 257

Query: 142 VLSS-DL-CKDLA-SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD 198
             ++ +L CK L  + +  +          ++++D+ +  L            T  E+  
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------------TPDEVKS 305

Query: 199 LYE--LQEKPFEL---VVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK--HDKFTELE 251
           L    L  +P +L   V++T+ + L +  ++  D L           +K    DK T + 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------DNWKHVNCDKLTTI- 358

Query: 252 QIKTELKSLEEKL------DLNSSSDEEDTILEDSPNIGDDINLEEL-SDLNSADEESKE 304
            I++ L  LE          L        ++   S +I   + L  +  D+  +D     
Sbjct: 359 -IESSLNVLEPAEYRKMFDRL--------SVFPPSAHIPTIL-LSLIWFDVIKSDVMVVV 408

Query: 305 DQDKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLV 364
           ++  +        S  L+++  K+S +++ +I  + +                L+  ++ 
Sbjct: 409 NKLHK-------YS--LVEKQPKESTISIPSI-YLELKVKLENEYA-------LHRSIVD 451

Query: 365 HLNLSATLETPTTSLLEKPRGET------ALHVAAAR--GNLTLVQSL------LKQGHP 410
           H N+  T ++        P  +         H+        +TL + +      L+Q   
Sbjct: 452 HYNIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--- 505

Query: 411 VKV-QDSAGWLPLHEAANHGHTDIVQAL-------VSAGADPNDKVQDSAGWLPLHEAA- 461
            K+  DS  W      A+    + +Q L                 V     +LP  E   
Sbjct: 506 -KIRHDSTAW-----NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 462 -NHGHTDIVQ-ALVSAGAEV 479
               +TD+++ AL++    +
Sbjct: 560 ICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 61/403 (15%), Positives = 118/403 (29%), Gaps = 122/403 (30%)

Query: 3   FKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN- 61
           +         +   + S   EL  +L S   K   +C + L      N Q   A + FN 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVL-----LNVQNAKAWNAFNL 264

Query: 62  --KELRLHARN---------FPEAVKTLGEIGDLYELQEKSFEIV-QSTHEKALDLARQN 109
             K L L  R                +L          E    ++ +    +  DL R+ 
Sbjct: 265 SCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREV 322

Query: 110 KDD-----KLIRTVMRSIKKLYK--KHDNLDSACSELHTVLSSDLCKDLASCYISLAQTY 162
                    +I   +R     +   KH N D    +L T++ S L   L        + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSL-NVLEPAEYR--KMF 375

Query: 163 KDNKQYNLAVDYFNKELRLHARNFPEAVK----TLG---------EIGDLYE-------L 202
                  L+V             FP +       L          ++  +         +
Sbjct: 376 DR-----LSV-------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 203 QEKPFELVVSTHEKALDLARQNKDD-----KLIRT------------------------V 233
           +++P E  +S     L+L  + +++      ++                          +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 234 MRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELS 293
              +K + +  ++ T    +  + + LE+K+         D+   ++   G  +N   L 
Sbjct: 478 GHHLKNI-EHPERMTLFRMVFLDFRFLEQKI-------RHDSTAWNAS--GSILNT--LQ 525

Query: 294 DLNSADEESKEDQDKRTNRKRAPRSHFLIKRN-----DKDSNL 331
            L    +    D D +  R       FL K        K ++L
Sbjct: 526 QLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 21/189 (11%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
            L  +    YI LA       ++  +  +FN+         PE      EI  L +  + 
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI--LTDRGD- 393

Query: 91  SFEIVQSTHEKALDLARQNKD----------DKLIRTVMRSIKKLYKKHDNLDSACSELH 140
            F+     ++ A  L    +              I     S        +  ++A   L 
Sbjct: 394 -FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452

Query: 141 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK--TLGEIGD 198
                D         I LAQ     ++ + A++ F     L AR   E ++  T  E   
Sbjct: 453 KACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL-ARTMDEKLQATTFAEAAK 509

Query: 199 LYE-LQEKP 206
           + + L+  P
Sbjct: 510 IQKRLRADP 518

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 30/206 (14%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ------ 88
           +    Y    Q Y   + Y  A + F K   L+          L  +  LY+        
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACL--LYKQGKFTESE 364

Query: 89  ---EKSFEIVQSTHE----KALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHT 141
               ++     +  E     A  L  +   D  I        K Y     L+    ++H 
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI--------KQYDIAKRLEEVQEKIHV 416

Query: 142 VLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY 200
            +   + K  + +   S   T  D +++N A+    K   L      +A   L ++    
Sbjct: 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQL--KL 473

Query: 201 ELQEKPFELVVSTHEKALDLARQNKD 226
           ++++   +  +   E +  LAR   +
Sbjct: 474 QMEK--IDEAIELFEDSAILARTMDE 497

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 34/240 (14%), Positives = 74/240 (30%), Gaps = 56/240 (23%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
            + YI LA T  D +       +F K + L+   +P         G +Y + +       
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPT---YYHRGQMYFILQD------ 325

Query: 97  STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
             ++ A                     + ++K               +  L  +    YI
Sbjct: 326 --YKNAK--------------------EDFQK---------------AQSLNPENVYPYI 348

Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216
            LA       ++  +  +FN+         PE      EI  L +  +  F+  +  ++ 
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI--LTDRGD--FDTAIKQYDI 403

Query: 217 ALDLARQNKDDK----LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDE 272
           A  L    +        +      + +   +     + E+    +K L +  +L+  S++
Sbjct: 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 30/230 (13%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIGDLYELQEK 90
           +    YI L   Y        A     K L +   +  +A   L        +  +L ++
Sbjct: 35  EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI-DPSSADAHAALAVVFQTEME-PKLADE 92

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
            +        KAL    +N        V+ +      +    + A   L       L  +
Sbjct: 93  EY-------RKALASDSRNAR------VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
            +  + +L       K+   A +YF K LRL+ RN P     + ++  LY+ +E  +   
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADL--LYKERE--YVPA 194

Query: 211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL 260
              ++       QN    L+        +L K  +          +LK L
Sbjct: 195 RQYYDLFAQGGGQNARSLLL------GIRLAKVFEDRDTAASYGLQLKRL 238

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 35/227 (15%)

Query: 32  LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
           +C   A      A+ +    +   A+       +L + +  EA   +  +   Y+L +  
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTL--YYQLGD-- 203

Query: 92  FEIVQSTHEKALDLARQ----NKDDKLIRTVMRSIKKLYKKHD---------NLDSACSE 138
                  HE +L   R+    ++D K      + +KKL K  +             A S+
Sbjct: 204 -------HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 256

Query: 139 LHTVLS--SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196
             +V+     + +        +   +  +++   A+   ++ L++   +   A+K   E 
Sbjct: 257 YESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEA 315

Query: 197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK 243
              Y ++E  ++  +  +E A +    N++D+ IR  +   ++L K+
Sbjct: 316 ---YLIEEM-YDEAIQDYEAAQEH---NENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 40/256 (15%), Positives = 85/256 (33%), Gaps = 21/256 (8%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ-- 88
           D   D    Y   A  +    +   A+    K + L   +F  A    G +  L +    
Sbjct: 31  DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL--LLKQGKL 87

Query: 89  -------EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHT 141
                  +K  +   S  E+    ++  K D++ R   +++        +  +A + L  
Sbjct: 88  DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD--AFDGADYTAAITFLDK 145

Query: 142 VLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
           +L   +C   A      A+ +    +   A+       +L + +  EA   +  +   Y+
Sbjct: 146 ILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTL--YYQ 200

Query: 202 LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE 261
           L +   EL +S   + L L + +K        ++ + KL +  ++     +        E
Sbjct: 201 LGD--HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258

Query: 262 EKLDLNSSSDEEDTIL 277
             +    S  E     
Sbjct: 259 SVMKTEPSVAEYTVRS 274

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 11/167 (6%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
           +L  +    YI LA       +++     F++  R      PE      EI  L +  + 
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEI--LTDKND- 387

Query: 91  SFEIVQSTHEKALDLARQNKD---DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL 147
            F+     ++ A++L  +               ++       +N   A + L       L
Sbjct: 388 -FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--L 444

Query: 148 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG 194
                   I LAQ     +  + A+  F +   L AR   E ++ + 
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL-ARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 19/196 (9%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
            L + LA                  A +   K + L     P    +   +  +   +  
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRV-NSYIYMALIMADRND 285

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
           S E      +KAL L   N        V     ++     N D A  +        L  +
Sbjct: 286 STEYYNY-FDKALKLDSNNSS------VYYHRGQMNFILQNYDQAGKDFDKAKE--LDPE 336

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELV 210
               YI LA       +++     F++  R      PE      EI  L +  +  F+  
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEI--LTDKND--FDKA 391

Query: 211 VSTHEKALDLARQNKD 226
           +  ++ A++L  +   
Sbjct: 392 LKQYDLAIELENKLDG 407

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 24/187 (12%), Positives = 56/187 (29%), Gaps = 16/187 (8%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ 96
            + YI +A    D        +YF+K L+L   N           G +  + +  ++   
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV---YYHRGQMNFILQN-YDQAG 324

Query: 97  STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI 156
              +KA +L  +N            +  L  + +  D   +            +      
Sbjct: 325 KDFDKAKELDPENIF------PYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPN 376

Query: 157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEK 216
             A+   D   ++ A+  ++  + L           +  +  + +         V    +
Sbjct: 377 FFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPL--VGKATLLTRNPTVENFIE 433

Query: 217 ALDLARQ 223
           A +L  +
Sbjct: 434 ATNLLEK 440

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 27/205 (13%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
            L  + +S Y    Q     + Y+ A   F+K   L           L  +   Y     
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACL--AYRE--N 352

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
            F+  ++   +A     +  +      V     ++    ++ D A  +    +   L   
Sbjct: 353 KFDDCETLFSEAKRKFPEAPE------VPNFFAEILTDKNDFDKALKQYDLAIE--LENK 404

Query: 151 LASCYISLAQTY---------KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
           L   Y+ +A               + +  A +   K  +L      +A   L ++    +
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQM--KLQ 461

Query: 202 LQEKPFELVVSTHEKALDLARQNKD 226
            ++   +  ++  E++ DLAR  ++
Sbjct: 462 QED--IDEAITLFEESADLARTMEE 484

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 9/165 (5%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
                Y  +   + +   + LA+ Y  K++R      P+    LG+    Y  +E  +  
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQA--YYYNKE--YVK 160

Query: 95  VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS---ELHTVLSSDLCKDL 151
             S+  K L+L        L R    + +    K            E+     +    +L
Sbjct: 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220

Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI 196
                 +A  Y  N+    A   +   L L      +A+  L   
Sbjct: 221 IEANEYIAYYYTINRDKVKADAAWKNILALDP-TNKKAIDGLKMK 264

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 21/197 (10%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
           +  K  ++ +    +      Q +LA+  +   +          +   G+IG  +  +  
Sbjct: 68  NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD----TTRLDMYGQIGSYFYNKGN 123

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
               +Q   EK +     +                Y  +     A S    VL      +
Sbjct: 124 FPLAIQY-MEKQIRPTTTDPKVFYELGQ------AYYYNKEYVKADSSFVKVLELK--PN 174

Query: 151 LASCYISLAQTY---KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE----IGDLYELQ 203
           +   Y+  A+       + +  LA  Y+ K + + A    +    L E    I   Y + 
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234

Query: 204 EKPFELVVSTHEKALDL 220
                   +  +  L L
Sbjct: 235 RD-KVKADAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 23/188 (12%)

Query: 37  ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIGDLYELQEKSF 92
                  A     N  Y  A++ FNK       N P           E+   Y+L +K  
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAK-YDLAQKDI 60

Query: 93  EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
           E         ++  +    D            +  K      A  +    +  D      
Sbjct: 61  ETYF----SKVNATKAKSADFEYYGK------ILMKKGQDSLAIQQYQAAVDRD--TTRL 108

Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVS 212
             Y  +   + +   + LA+ Y  K++R      P+    LG+    Y  +E  +    S
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQA--YYYNKE--YVKADS 163

Query: 213 THEKALDL 220
           +  K L+L
Sbjct: 164 SFVKVLEL 171

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 18/196 (9%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDY---FNKELRLHARNFPEAVKTLGEIGDLYELQEKS 91
           +    Y   A  Y +  +Y+LA      +  ++    +      +  G+I  L +  + S
Sbjct: 35  NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT-KAKSADFEYYGKI--LMKKGQDS 91

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
             I Q  ++ A+D      D      +   I   +    N   A   +   +        
Sbjct: 92  LAIQQ--YQAAVDRDTTRLD------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTD 141

Query: 152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVV 211
              +  L Q Y  NK+Y  A   F K L L   N               +   K   L  
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTK-QGLAK 199

Query: 212 STHEKALDLARQNKDD 227
             +EK +++       
Sbjct: 200 PYYEKLIEVCAPGGAK 215

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 37/268 (13%), Positives = 86/268 (32%), Gaps = 44/268 (16%)

Query: 16  SLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK------------- 62
             + +  E     S  +  D      S A     +  Y  A+ + +K             
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181

Query: 63  ---ELRLHARNFPEAVKTLGE--------------IGDLYELQEKSFEIVQSTHEKALDL 105
              E  +      +A+  L                I  LY       E+  S   + L L
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKL 240

Query: 106 ARQNKDDKLIRTVMRSIKKLYKKHDNL------DSACSELHTVLS--SDLCKDLASCYIS 157
            + +K        ++ + KL +  + L        A S+  +V+     + +        
Sbjct: 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300

Query: 158 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKA 217
           +   +  +++   A+   ++ L++   +   A+K   E    Y ++E  ++  +  +E A
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEA---YLIEEM-YDEAIQDYETA 355

Query: 218 LDLARQNKDDKLIRTVMRSMKKLYKKHD 245
            +    ++  +      + + K  +K D
Sbjct: 356 QEHNENDQQIREGLEKAQRLLKQSQKRD 383

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 41/272 (15%), Positives = 75/272 (27%), Gaps = 63/272 (23%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
           D   D    Y   A  +    +   A+    K ++L   +F  A    G +  L +  + 
Sbjct: 54  DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHL--LLKQGK- 109

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
                       LD A  +                +KK    + + +E     S  +  D
Sbjct: 110 ------------LDEAEDD----------------FKKVLKSNPSENEEKEAQSQLIKSD 141

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNK----------------ELRLHARNFPEAVKTLG 194
                 S A     +  Y  A+ + +K                E  +      +A+  L 
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 195 E--------------IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL 240
                          I  LY       EL +S   + L L + +K        ++ + KL
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260

Query: 241 YKKHDKFTELEQIKTELKSLEEKLDLNSSSDE 272
            +  ++     +        E  +    S  E
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAE 292

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 27/204 (13%), Positives = 54/204 (26%), Gaps = 23/204 (11%)

Query: 30  SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG----EIGDLY 85
           ++    +++    LA  Y   + Y  A       L+        A          +    
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS-DPKNELAWLVRAEIYQYLKV-N 58

Query: 86  ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS 145
           +  ++SF        +AL +   + +   I         L  + +    + +     L+ 
Sbjct: 59  DKAQESF-------RQALSIKPDSAE---INNNYGWF--LCGRLNRPAESMAYFDKALAD 106

Query: 146 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 205
                     ++         Q+ LA  Y  + L      FP A K L          + 
Sbjct: 107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQFPPAFKELART--KMLAGQ- 162

Query: 206 PFELVVSTHEKALDLARQNKDDKL 229
                    +K        + D L
Sbjct: 163 -LGDADYYFKKYQSRVEVLQADDL 185

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 17/204 (8%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
            +A+   +LA  Y    +Y  A     + L +  +      P+  K L  +  L + Q K
Sbjct: 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168

Query: 91  SFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
            +E V+  +++AL++ +     DD  +     ++   Y K      A +    +L+    
Sbjct: 169 -YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227

Query: 149 K-------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDL 199
           +       +    ++   +  +   +      +        A   + P    TL  +G L
Sbjct: 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287

Query: 200 YELQEKPFELVVSTHEKALDLARQ 223
           Y  Q K FE   +  E A+   +Q
Sbjct: 288 YRRQGK-FEAAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 18/205 (8%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
                  +L   Y    +Y +AV    + L    +      P+    L  +  +Y  Q K
Sbjct: 25  ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84

Query: 91  SFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
            ++   +    AL +  +   KD   +   + ++  LY K      A       L     
Sbjct: 85  -YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143

Query: 149 K------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGD 198
                  D+A    +LA   ++  +Y     Y+ + L ++        P   KT   +  
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203

Query: 199 LYELQEKPFELVVSTHEKALDLARQ 223
            Y  Q K  +   + +++ L  A +
Sbjct: 204 CYLKQGKFKQ-AETLYKEILTRAHE 227

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 19/232 (8%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
           D+A+    LA  Y+D  +Y  A +  N  L +  +      P    TL  +  LY  + K
Sbjct: 67  DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 126

Query: 91  SFEIVQSTHEKALDLARQN--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
            ++  +   ++AL++  +   KD   +   + ++  L +     +         L     
Sbjct: 127 -YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185

Query: 149 K------DLASCYISLAQTYKDNKQYNLAVDYFNKEL-RLHARNF----PEAVKTLGEIG 197
           K      ++A    +LA  Y    ++  A   + + L R H R F     E         
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE 245

Query: 198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE 249
           +  E + K  +   S  E          D   + T ++++  LY++  KF  
Sbjct: 246 EREECKGK-QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/170 (12%), Positives = 50/170 (29%), Gaps = 11/170 (6%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
                +++         +  LA D      +    N P     L       + ++    +
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVL 167

Query: 95  VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
            Q           ++  ++    ++        +   ++   ++     S  L + L+  
Sbjct: 168 KQH--------FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS--LAEHLSET 217

Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
              L + Y      + A   F   +  +  NF E    L E+  L + Q+
Sbjct: 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQD 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 30/192 (15%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
           +    YI+L    K+ + ++ AV  + + L L   N       L  +   YE      ++
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACV--YYEQGL--IDL 255

Query: 95  VQSTHEKALDL------ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
              T+ +A++L      A  N  +              K+  ++  A    +T L   LC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLAN------------ALKEKGSVAEAEDCYNTALR--LC 301

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE 208
              A    +LA   ++      AV  + K L +     PE       +  + + Q K  +
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGK-LQ 356

Query: 209 LVVSTHEKALDL 220
             +  +++A+ +
Sbjct: 357 EALMHYKEAIRI 368

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 28/176 (15%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
           + A  + +LA  Y +    +LA+D + + + L   +FP+A   L       + +    E 
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANA---LKEKGSVAEA 290

Query: 95  VQSTHEKALDL------ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC 148
               +  AL L      +  N  +            + ++  N++ A       L   + 
Sbjct: 291 EDC-YNTALRLCPTHADSLNNLAN------------IKREQGNIEEAVRLYRKALE--VF 335

Query: 149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE 204
            + A+ + +LA   +   +   A+ ++ + +R+ +  F +A   +G    L E+Q+
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNT--LKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 18/186 (9%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
           + A  + +L   +    +  LA+ +F K + L   NF +A      +G++ +        
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDA---YINLGNVLKEARIFDRA 222

Query: 95  VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
           V + + +AL L+  +        V  ++  +Y +   +D A       +           
Sbjct: 223 VAA-YLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDA 273

Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214
           Y +LA   K+      A D +N  LRL      +++  L  I    E      E  V  +
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANI--KREQGN--IEEAVRLY 328

Query: 215 EKALDL 220
            KAL++
Sbjct: 329 RKALEV 334

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 18/186 (9%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI 94
           D     + L+  +   ++ + +  +    ++ +     EA   LG +    E  +   + 
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV--YKERGQ--LQE 85

Query: 95  VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC 154
               +  AL L     D         ++        +++ A     + L      DL   
Sbjct: 86  AIEHYRHALRLKPDFID------GYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCV 137

Query: 155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH 214
              L    K   +   A   + K +     NF  A   LG +       E    L +   
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCV--FNAQGE--IWLAIHHF 192

Query: 215 EKALDL 220
           EKA+ L
Sbjct: 193 EKAVTL 198

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 48/195 (24%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF----PEAVKTLGEIGDLYELQEK 90
           D+A    +LA   ++  +      Y+ + L ++A       P   KT   +   Y  Q K
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
                   ++ A  L ++         ++    +      N                  D
Sbjct: 185 --------YQDAETLYKE---------ILTRAHEKEFGSVNG-----------------D 210

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDLYELQEKPFE 208
               ++   +  +   +   +  Y        A   + P    TL  +G LY  Q K   
Sbjct: 211 NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK--- 267

Query: 209 LVVSTHEKALDLARQ 223
                 E A  L   
Sbjct: 268 -----LEAAHTLEDC 277

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 27/185 (14%)

Query: 40  YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV----KTLGEIGDLYELQEKSFEIV 95
             + A    +  +Y  A+   N  +    R          K+   IG+ Y          
Sbjct: 41  LNNRAAAEYEKGEYETAISTLNDAVEQ-GREMRADYKVISKSFARIGNAYHKLGD----- 94

Query: 96  QSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY 155
               +K ++     K     RT       +  K  N +    +       +   + A   
Sbjct: 95  ---LKKTIEY--YQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN--PEKAEEA 142

Query: 156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHE 215
               + Y     +  AV  + + ++                  L +L    F   ++   
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAA--LAKLMS--FPEAIADCN 197

Query: 216 KALDL 220
           KA++ 
Sbjct: 198 KAIEK 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	480
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.91
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.9
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.88
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.88
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.88
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.88
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.88
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.88
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.87
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.87
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.85
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.83
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.83
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.81
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.8
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.8
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.8
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.8
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.8
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.78
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.78
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.78
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.78
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.78
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.77
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.76
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.76
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.76
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.76
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.75
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.75
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.75
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.74
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.74
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.73
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.72
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.72
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.7
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.7
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.69
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.68
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.67
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.67
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.67
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.66
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.65
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.6
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.59
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.59
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.57
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.55
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.52
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.47
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.47
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.46
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.46
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.46
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.45
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.44
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.44
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.43
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.36
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.36
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.34
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.34
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.33
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.32
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.32
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.3
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.29
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.27
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.25
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.24
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.24
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.23
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.22
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.2
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.19
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.17
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.16
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.15
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.13
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.12
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.08
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.01
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.99
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.99
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.98
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.95
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.92
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.89
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.88
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.83
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.81
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.81
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.8
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.74
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.72
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.62
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.51
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.39
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.38
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.32
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.32
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.24
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.19
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.19
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.13
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.98
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.78
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.77
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.76
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.74
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.72
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.7
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.61
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.58
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.52
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.4
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.3
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.88
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.78
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.6
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.51
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.78
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.52
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.5
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.98
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.68
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.69
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.69
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.22
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.77
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.24
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.24
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.79
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.64
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.55
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.87
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.83
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.79
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.36
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	88.0
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	87.89
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.0
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	84.07
2o8p_A	227	14-3-3 domain containing protein; signaling protei	83.53
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	83.26
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	81.39
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.39
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	80.26

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=1.9e-29  Score=211.53  Aligned_cols=153  Identities=33%  Similarity=0.422  Sum_probs=139.0

Q ss_pred             hhhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchH
Q psy875          309 RTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETA  388 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  388 (480)
                      .....|+......+...+.++|..+..+.++++.|+..++.+++++|++.|++++..+                ..|.||
T Consensus        10 ~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d----------------~~g~Tp   73 (169)
T 4gpm_A           10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----------------SDGRTP   73 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhc----------------cCCCCH
Confidence            4566777777777777889999999999999999999999999999999999998754                359999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy875          389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI  468 (480)
Q Consensus       389 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~  468 (480)
                      ||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..|+.++
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~g~~~i  151 (169)
T 4gpm_A           74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLDLAREHGNEEV  151 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999  669999999999999999999


Q ss_pred             HHHHHHcCCCC
Q psy875          469 VQALVSAGAEV  479 (480)
Q Consensus       469 ~~~Ll~~ga~~  479 (480)
                      +++|+++||++
T Consensus       152 v~~Ll~~GA~i  162 (169)
T 4gpm_A          152 VKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHTC----
T ss_pred             HHHHHHCCCCc
Confidence            99999999997

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1e-26  Score=194.77  Aligned_cols=125  Identities=40%  Similarity=0.587  Sum_probs=118.9

Q ss_pred             hHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q psy875          338 SITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA  417 (480)
Q Consensus       338 ~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~  417 (480)
                      ..|+.|++.|+.++|+.|+++|+|++..+                ..|.||||+|+..++.++++.|++.|++++.+|..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d----------------~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~   69 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASD----------------SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD   69 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------------CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccC
Confidence            46889999999999999999999998764                35999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~gadvn--~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~  130 (169)
T 4gpm_A           70 GRTPLHHAAENGHKEVVKLLISKGADVN--AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN  130 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            9999999999999999999999999999  669999999999999999999999999999985

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=6.1e-27  Score=189.79  Aligned_cols=135  Identities=26%  Similarity=0.275  Sum_probs=127.0

Q ss_pred             CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHH
Q psy875          325 NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSL  404 (480)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l  404 (480)
                      |+.+++..+..+.++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+. |+.+++++|
T Consensus         1 G~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~-~~~~~v~~L   63 (136)
T 1d9s_A            1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN----------------RFGRRPIQVMMM-GSAQVAELL   63 (136)
T ss_dssp             CCCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTCCTTTTTSTT-SCHHHHHHH
T ss_pred             CCCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC----------------CCCCCHHHHHHc-CCHHHHHHH
Confidence            456788888899999999999999999999999999988653                349999999999 999999999


Q ss_pred             HhcCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          405 LKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       405 l~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      +++|++++.+|.. |+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..++.+++++|+++|+|
T Consensus        64 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999 9999999999999999999999999999  6699999999999999999999999999986

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=207.12  Aligned_cols=140  Identities=26%  Similarity=0.296  Sum_probs=120.4

Q ss_pred             ccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHH
Q psy875          323 KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQ  402 (480)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~  402 (480)
                      ...+.++|..+..+.|||++|+..|+.++|++|++.|++++...                ..|.||+|+|+..++.++++
T Consensus        73 l~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~----------------~~g~t~l~~a~~~~~~~~~~  136 (269)
T 4b93_B           73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN----------------ADQAVPLHLACQQGHFQVVK  136 (269)
T ss_dssp             --CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHHTCHHHHH
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccC----------------CCCCCccccccccChHHHHH
Confidence            34556778888888899999999999999999999998887653                34889999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++  .++..|.||||+|+..|+.+++++|+++|+|++
T Consensus       137 ~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             HHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999988899999999999999999999999999988  558889999999999999999999999998875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=7.4e-24  Score=203.44  Aligned_cols=256  Identities=11%  Similarity=0.103  Sum_probs=215.3

Q ss_pred             HHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hcc-CchHHHHHHHH
Q psy875            5 IALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARN-FPEAVKTLGEI   81 (480)
Q Consensus         5 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~~~~~l   81 (480)
                      +++..|.. ..++......+.+.+........+.+++.+|.+|...|++++|+.++++|++++  .++ .+..+.++.++
T Consensus       112 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          112 YELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            33333433 333333444455555556677789999999999999999999999999999997  222 45577899999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc---c-ccHHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL---C-KDLASCYIS  157 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~---~-~~~~~~~~~  157 (480)
                      |.+|.. .|++++|+.++++|+.+.+..++....+.++.++|.+|..+|++++|+.+|++++....   . +..+.++.+
T Consensus       191 g~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  269 (383)
T 3ulq_A          191 ATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL  269 (383)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            999554 59999999999999999999988999999999999999999999999999999987421   2 566889999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy875          158 LAQTYKDNKQYNLAVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRS  236 (480)
Q Consensus       158 la~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  236 (480)
                      +|.+|..+|++++|+.++++++++... ..+.....+..+|.++...|+ +    ..+++|+...++.+..+....++..
T Consensus       270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~-~----~~~~~al~~~~~~~~~~~~~~~~~~  344 (383)
T 3ulq_A          270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD-E----EAIQGFFDFLESKMLYADLEDFAID  344 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC-H----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            999999999999999999999998665 334444447789999999999 7    7888999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhhccC
Q psy875          237 MKKLYKKHDKFTELEQIKTELKSLEEKLDLN  267 (480)
Q Consensus       237 l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~~  267 (480)
                      +|.+|..+|++++|..+++++.++.+++...
T Consensus       345 la~~y~~~g~~~~A~~~~~~al~~~~~i~~~  375 (383)
T 3ulq_A          345 VAKYYHERKNFQKASAYFLKVEQVRQLIQGG  375 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTSCSSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999998763

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=9e-26  Score=207.20  Aligned_cols=101  Identities=28%  Similarity=0.370  Sum_probs=94.6

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP  456 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp  456 (480)
                      ....+..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|++++  .+|..|.||
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tp  228 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTP  228 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCH
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--ccccCCCCH
Confidence            3445678999999999999999999999999999999854 9999999999999999999999999999  669999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          457 LHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       457 l~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ||+|+..|+.+++++|+++|++++
T Consensus       229 L~~A~~~~~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          229 LGSALLRPNPILARLLRAHGAPEP  252 (282)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             HHHHHHcCCcHHHHHHHHcCCCcC
Confidence            999999999999999999999985

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=1.5e-25  Score=202.10  Aligned_cols=146  Identities=23%  Similarity=0.192  Sum_probs=108.3

Q ss_pred             cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc------------------cCCCccccCCCCCchHHHHHHH
Q psy875          333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL------------------ETPTTSLLEKPRGETALHVAAA  394 (480)
Q Consensus       333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~l~~a~~  394 (480)
                      +..+.++++.|+..|+.++|++|+++|++++..+..+.+.                  .........+..|.||||+|+.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            3445555555555555555555555555554432211110                  1111333445568999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          395 RGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       395 ~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      .|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|++
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999899999999999999999999999999998  558889999999999999999999999


Q ss_pred             cCCCCC
Q psy875          475 AGAEVS  480 (480)
Q Consensus       475 ~ga~~~  480 (480)
                      +|++++
T Consensus       212 ~ga~~~  217 (253)
T 1yyh_A          212 HFANRD  217 (253)
T ss_dssp             TTCCTT
T ss_pred             cCCCcc
Confidence            998874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=9.5e-26  Score=190.82  Aligned_cols=140  Identities=24%  Similarity=0.272  Sum_probs=127.7

Q ss_pred             hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHH
Q psy875          322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLV  401 (480)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~  401 (480)
                      +..+...++..+..+.++++.|+..|+.++|++|+++|++++..+                ..|.||||+|+..|+.+++
T Consensus        22 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v   85 (172)
T 3v30_A           22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA----------------KERESALSLASTGGYTDIV   85 (172)
T ss_dssp             HTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC----------------TTCCCHHHHHHHTTCHHHH
T ss_pred             HHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc----------------ccCCCHHHHHHHCCCHHHH
Confidence            333444467778889999999999999999999999999988654                3499999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          402 QSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       402 ~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      ++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        86 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           86 GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999  56999999999999999999999999998754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=1.3e-25  Score=189.00  Aligned_cols=148  Identities=24%  Similarity=0.232  Sum_probs=133.4

Q ss_pred             cCCccchhhhccCC-----------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRND-----------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||+|.++..+.           .+++..+..+.++++.|+..|+.+++++|+++|++++..+               
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------   66 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---------------   66 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC---------------
Confidence            36677777766544           4567778889999999999999999999999999988653               


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                       ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+
T Consensus        67 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~  143 (167)
T 3v31_A           67 -KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMDLAV  143 (167)
T ss_dssp             -TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHH
T ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHH
Confidence             349999999999999999999999999999999999999999999999999999999999999  56999999999999


Q ss_pred             HcCCHHHHHHHHHcCCC
Q psy875          462 NHGHTDIVQALVSAGAE  478 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~ga~  478 (480)
                      ..|+.+++++|++++++
T Consensus       144 ~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          144 ALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHTCHHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHH
Confidence            99999999999998764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=2.1e-25  Score=192.36  Aligned_cols=150  Identities=17%  Similarity=0.133  Sum_probs=137.0

Q ss_pred             hhhccCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875          309 RTNRKRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT  377 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~  377 (480)
                      ..+..|.||||+++..+..           +++..+..+.+++++|+..|+.+++++|+++|++++..+           
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------   98 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD-----------   98 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-----------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------
Confidence            3466799999999887654           456677789999999999999999999999999987653           


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL  457 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl  457 (480)
                           ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||
T Consensus        99 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l  171 (192)
T 2rfm_A           99 -----FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAE  171 (192)
T ss_dssp             -----TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHH
T ss_pred             -----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHH
Confidence                 349999999999999999999999999999999999999999999999999999999999999  5699999999


Q ss_pred             HHHHHcCCHHHHHHHHHcC
Q psy875          458 HEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       458 ~~A~~~~~~~~~~~Ll~~g  476 (480)
                      |+|+..|+.+++++|+++|
T Consensus       172 ~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          172 ASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=7.8e-25  Score=196.01  Aligned_cols=170  Identities=25%  Similarity=0.269  Sum_probs=137.6

Q ss_pred             hhhccCCccchhhhccCC---------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-
Q psy875          309 RTNRKRAPRSHFLIKRND---------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-  372 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-  372 (480)
                      ..+..|.||||+|+..+.               .+++..+..+.++++.|+..|+.+++++|++.|++++..+....+. 
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            345668888888776653               3556666777888888888888888888888888877543221110 


Q ss_pred             ----------------cC----CCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCH
Q psy875          373 ----------------ET----PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHT  431 (480)
Q Consensus       373 ----------------~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~  431 (480)
                                      ..    .......+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence                            11    11344556679999999999999999999999999999988 7899999999999999


Q ss_pred             HHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          432 DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       432 ~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +++++|+++|++++  ..|..|.||||+|+..|+.+++++|+++|++++
T Consensus       164 ~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          164 SMVQLLLQHGANVN--AQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             HHHHHHHHTTCCTT--CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            99999999999999  569999999999999999999999999999975

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=3.4e-25  Score=185.41  Aligned_cols=147  Identities=25%  Similarity=0.256  Sum_probs=130.1

Q ss_pred             cCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHH
Q psy875          313 KRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVA  392 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a  392 (480)
                      .|+......+...+.+++..+..+.++++.|+. |+.+++++|+++|++++..+                ..|.||||+|
T Consensus        15 ~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A   77 (162)
T 1ihb_A           15 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKD----------------RTGFAVIHDA   77 (162)
T ss_dssp             HTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCC----------------CCCCCHHHHH
Confidence            344444444455667788888899999999999 99999999999999988653                3499999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCCcHHHHHHHcCCHHHHHH
Q psy875          393 AARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD-PNDKVQDSAGWLPLHEAANHGHTDIVQA  471 (480)
Q Consensus       393 ~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~g~tpl~~A~~~~~~~~~~~  471 (480)
                      +..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++ ++  ..+..|.||||+|+..|+.+++++
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~~A~~~~~~~~~~~  155 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLARLYGRNEVVSL  155 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999998 47  568999999999999999999999


Q ss_pred             HHHcCCC
Q psy875          472 LVSAGAE  478 (480)
Q Consensus       472 Ll~~ga~  478 (480)
                      |+++|||
T Consensus       156 Ll~~GAd  162 (162)
T 1ihb_A          156 MQANGAG  162 (162)
T ss_dssp             HHHTC--
T ss_pred             HHHhCCC
Confidence            9999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=2.3e-25  Score=198.82  Aligned_cols=157  Identities=24%  Similarity=0.264  Sum_probs=118.7

Q ss_pred             hccCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          311 NRKRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      +..|.||||+++..+           +.+++..+..+.+++++|+..|+.+++++|++.|+++...          ....
T Consensus        42 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~~  111 (236)
T 1ikn_D           42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------SILK  111 (236)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS----------CGGG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH----------HHhh
Confidence            334666666665443           3344555556666666666666666666666666654321          1123


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH  458 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~  458 (480)
                      ..+..|.||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|+++|++++  ..|..|.||||
T Consensus       112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~  189 (236)
T 1ikn_D          112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ  189 (236)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH
Confidence            3455689999999999999999999999999998887 89999999999999999999999999988  55888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC
Q psy875          459 EAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +|+..|+.+++++|+++|+++
T Consensus       190 ~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          190 LTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             GCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHccCchHHHHHHHHcchhh
Confidence            999999999999999999864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.92  E-value=6e-23  Score=198.15  Aligned_cols=260  Identities=15%  Similarity=0.141  Sum_probs=222.5

Q ss_pred             hhHHHhhccchhhhhhh-------HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCch
Q psy875            3 FKIALSRGIGLSDSLDS-------ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPE   73 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~   73 (480)
                      +.+++.+|.. +...++       ....+.+.......+..+.++..+|.++...|++++|+.++++++++.  .++...
T Consensus        47 ~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  125 (406)
T 3sf4_A           47 SAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG  125 (406)
T ss_dssp             HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc
Confidence            3456666666 333333       222244555555567789999999999999999999999999999996  344455


Q ss_pred             HHHHHHHHHHHHHHhhcc--------------------HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChH
Q psy875           74 AVKTLGEIGDLYELQEKS--------------------FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLD  133 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~--------------------~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~  133 (480)
                      .+.++..+|.+|... |+                    +++|+.++++++.+....++.+....++.++|.+|..+|+++
T Consensus       126 ~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  204 (406)
T 3sf4_A          126 EARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR  204 (406)
T ss_dssp             HHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred             hHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHH
Confidence            677899999995555 99                    999999999999999988888899999999999999999999


Q ss_pred             HHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCch
Q psy875          134 SACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPF  207 (480)
Q Consensus       134 ~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~  207 (480)
                      +|+.++++++...+.    ...+.++.++|.+|..+|++++|+.++++++++...  ++.....++..+|.++...|+ +
T Consensus       205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~  283 (406)
T 3sf4_A          205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-Y  283 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-H
Confidence            999999999876543    334668999999999999999999999999998665  455668899999999999999 9


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                      ++|+.++++++.+....++......++..+|.+|..+|++++|..+++++.++..++.
T Consensus       284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  341 (406)
T 3sf4_A          284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG  341 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999887764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=1e-24  Score=194.01  Aligned_cols=151  Identities=25%  Similarity=0.248  Sum_probs=129.4

Q ss_pred             ccCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875          312 RKRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL  380 (480)
Q Consensus       312 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~  380 (480)
                      ..|.||||+++..+           +.+++..+..+.++++.|+..|+.+++++|+++|++++..+              
T Consensus        38 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------  103 (231)
T 3aji_A           38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN--------------  103 (231)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCC--------------
Confidence            34777777776554           44567777788899999999999999999999999887643              


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                        ..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.||||+|
T Consensus       104 --~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A  179 (231)
T 3aji_A          104 --QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLHLA  179 (231)
T ss_dssp             --TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHH
T ss_pred             --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHHHH
Confidence              348899999999999999999999999999999999999999999999999999999999998  5588899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCC
Q psy875          461 ANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       461 ~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +..|+.+++++|+++|++++
T Consensus       180 ~~~~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          180 CDEERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCSC
T ss_pred             HHCCCHHHHHHHHHCCCCCC
Confidence            99999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=1.3e-24  Score=183.19  Aligned_cols=149  Identities=30%  Similarity=0.324  Sum_probs=132.2

Q ss_pred             hhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHH
Q psy875          310 TNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETAL  389 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l  389 (480)
                      ....|+..+...+...+.+++..+..+.++++.|+..|+.+++++|+++|++++..+                ..|.|||
T Consensus        21 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L   84 (169)
T 2y1l_E           21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD----------------HAGMTPL   84 (169)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC----------------CCCCCHH
Confidence            344455555444555677788888899999999999999999999999999987653                3499999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875          390 HVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV  469 (480)
Q Consensus       390 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~  469 (480)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999  5699999999999999999999


Q ss_pred             HHHHHcC
Q psy875          470 QALVSAG  476 (480)
Q Consensus       470 ~~Ll~~g  476 (480)
                      ++|++.|
T Consensus       163 ~~L~~~G  169 (169)
T 2y1l_E          163 EILQKLN  169 (169)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHcC
Confidence            9999887

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=4.6e-23  Score=199.68  Aligned_cols=261  Identities=14%  Similarity=0.087  Sum_probs=223.8

Q ss_pred             hhHHHhhccchhhhhhhHH-------HHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCch
Q psy875            3 FKIALSRGIGLSDSLDSAC-------TELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPE   73 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~   73 (480)
                      +.+++.+|.. +...++..       ..+.+.+........+.++..+|.+|...|++++|+.+|++++++.  .++.+.
T Consensus        86 ~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  164 (411)
T 4a1s_A           86 SAIYSQLGNA-YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS  164 (411)
T ss_dssp             HHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence            3566677776 44444422       2244444445567889999999999999999999999999999996  444566


Q ss_pred             HHHHHHHHHHHHHHhhcc-----------------HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHH
Q psy875           74 AVKTLGEIGDLYELQEKS-----------------FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSAC  136 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~-----------------~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~  136 (480)
                      ...++..+|.+|... |+                 +++|+.++++++.+....++......++.++|.+|...|++++|+
T Consensus       165 ~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  243 (411)
T 4a1s_A          165 EGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI  243 (411)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            788999999995555 99                 999999999999998888888888999999999999999999999


Q ss_pred             HHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHH
Q psy875          137 SELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELV  210 (480)
Q Consensus       137 ~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A  210 (480)
                      .+|++++...+.    .....++.++|.+|..+|++++|+.++++++++...  +......++..+|.++..+|+ +++|
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A  322 (411)
T 4a1s_A          244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE-FNTA  322 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHH
Confidence            999999876543    233568999999999999999999999999998664  455668899999999999999 9999


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          211 VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       211 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      +.++++++.+....++......++..++.+|..+|++++|..+++++.++.++++.
T Consensus       323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999988999999999999999999999999999999999877765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=5.2e-25  Score=187.50  Aligned_cols=145  Identities=23%  Similarity=0.268  Sum_probs=133.5

Q ss_pred             chhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC
Q psy875          318 SHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN  397 (480)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~  397 (480)
                      +.+++..++.+++..+..+.++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+..|+
T Consensus        21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A           21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN----------------RGDDTPLHLAASHGH   84 (179)
T ss_dssp             HHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHTTC
T ss_pred             HHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHcCC
Confidence            3344555577788888999999999999999999999999999998654                349999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875          398 LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA  477 (480)
Q Consensus       398 ~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  477 (480)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.|||++|+..++.+++++|+++|+
T Consensus        85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999  669999999999999999999999999999


Q ss_pred             CCC
Q psy875          478 EVS  480 (480)
Q Consensus       478 ~~~  480 (480)
                      +++
T Consensus       163 ~~~  165 (179)
T 3f6q_A          163 NLN  165 (179)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            985

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.92  E-value=7.6e-23  Score=191.76  Aligned_cols=260  Identities=15%  Similarity=0.145  Sum_probs=217.0

Q ss_pred             hhHHHhhccchhhhhhh-------HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCch
Q psy875            3 FKIALSRGIGLSDSLDS-------ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPE   73 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~   73 (480)
                      ..++..+|.. +...++       ....+.+..........+.++..+|.++...|++++|+.++++++++.  .++...
T Consensus        43 ~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  121 (338)
T 3ro2_A           43 SAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG  121 (338)
T ss_dssp             HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence            3455566665 333333       222244445555567788999999999999999999999999999986  334455


Q ss_pred             HHHHHHHHHHHHHHhhcc--------------------HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChH
Q psy875           74 AVKTLGEIGDLYELQEKS--------------------FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLD  133 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~--------------------~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~  133 (480)
                      .+.++..+|.+|... |+                    +++|+.++++++.+.+..++.+....++.++|.+|...|+++
T Consensus       122 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  200 (338)
T 3ro2_A          122 EARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR  200 (338)
T ss_dssp             HHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence            677899999995555 99                    999999999999998888888888999999999999999999


Q ss_pred             HHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCch
Q psy875          134 SACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPF  207 (480)
Q Consensus       134 ~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~  207 (480)
                      +|+.++++++...+.    ...+.++..+|.+|...|++++|+.++++++++...  ++.....++..+|.++...|+ +
T Consensus       201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~  279 (338)
T 3ro2_A          201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-Y  279 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-H
Confidence            999999998866543    334668999999999999999999999999998655  456668899999999999999 9


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                      ++|..++++++.+.+..++......++..++.+|..+|++++|..+++++.++.++++
T Consensus       280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999899999999999999999999999999999998876653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.4e-24  Score=175.87  Aligned_cols=125  Identities=31%  Similarity=0.443  Sum_probs=116.4

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.++++.|+..|+.++|++|+++|++++..+                ..|.||||+|+..|+.+++++|++.|++++.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   75 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKD----------------EYGLTPLYLATAHGHLEIVEVLLKNGADVNA   75 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            456688999999999999999999999988653                3499999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  476 (480)
                      +|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++++|+++|
T Consensus        76 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999  56999999999999999999999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.1e-24  Score=172.38  Aligned_cols=126  Identities=42%  Similarity=0.566  Sum_probs=118.4

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      ++.++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+..++.+++++|++.|++++.+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~   64 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD----------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK   64 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcC----------------CCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc
Confidence            36789999999999999999999999987653                34999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      |..|.||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++++|+++|+|
T Consensus        65 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCCCcHHHHHHHcChHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999  5699999999999999999999999999996

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=203.68  Aligned_cols=151  Identities=21%  Similarity=0.195  Sum_probs=128.2

Q ss_pred             hccCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          311 NRKRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      +..|.||||+|+..+..           +++.....+.++++.|+..++.+++++|++.|++++..+             
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d-------------  149 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD-------------  149 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-------------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC-------------
Confidence            34588999998777644           556778889999999999999999999999999998654             


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                         ..|.||||+|+..|+.+++++|++.|+++|.++..|+||||+|+..|+.++|++|+++|++++  .+|..|+||||+
T Consensus       150 ---~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~--~~d~~G~TpL~~  224 (269)
T 4b93_B          150 ---LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ--VLNKRQRTAVDC  224 (269)
T ss_dssp             ---TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCSGGG
T ss_pred             ---CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHH
Confidence               359999999999999999999999999999999999999999999999999999999999999  669999999999


Q ss_pred             HHHcCC-HHHHHHHHHcCCCC
Q psy875          460 AANHGH-TDIVQALVSAGAEV  479 (480)
Q Consensus       460 A~~~~~-~~~~~~Ll~~ga~~  479 (480)
                      |+.+++ .+++++|...|+.+
T Consensus       225 A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          225 AEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             SCTTCHHHHHTTC--------
T ss_pred             HHhCCcHHHHHHHHHHhchhh
Confidence            998876 45666666666543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=9.9e-23  Score=195.17  Aligned_cols=241  Identities=14%  Similarity=0.102  Sum_probs=202.8

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--cc-CchHHHHHHHHHHHHHHhhccHHHHH
Q psy875           20 ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RN-FPEAVKTLGEIGDLYELQEKSFEIVQ   96 (480)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~-~~~~~~~~~~lg~~y~~~~~~~~~A~   96 (480)
                      ....+.+..........+.+++.+|.+|...|++++|+.++++|++++.  .+ .+..+.++.++|.+|.. .|++++|+
T Consensus       124 ~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~  202 (378)
T 3q15_A          124 YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD-FKHYDKAL  202 (378)
T ss_dssp             HHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH-hCCHHHHH
Confidence            3334555555556678899999999999999999999999999999962  22 33568889999999544 49999999


Q ss_pred             HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc---cccHHHHHHHHHHHHHhhccHHHHHH
Q psy875           97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL---CKDLASCYISLAQTYKDNKQYNLAVD  173 (480)
Q Consensus        97 ~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~la~~y~~~~~~~~A~~  173 (480)
                      .++++|+.+.+..++....+.++.++|.+|..+|++++|+.+|++++....   .+....++.++|.+|..+|++++|+.
T Consensus       203 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  282 (378)
T 3q15_A          203 PHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ  282 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999988888888899999999999999999999999999987332   24457889999999999999999999


Q ss_pred             HHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875          174 YFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ  252 (480)
Q Consensus       174 ~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  252 (480)
                      ++++++++... ..+.....+..++.++...++ .    ..+.+++...++.+..+....++..+|.+|..+|++++|..
T Consensus       283 ~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~-~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~  357 (378)
T 3q15_A          283 FIEEGLDHITARSHKFYKELFLFLQAVYKETVD-E----RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAA  357 (378)
T ss_dssp             HHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC-H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999998665 233334456788888887777 4    67888888888888888889999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q psy875          253 IKTELKSLEEKLDL  266 (480)
Q Consensus       253 ~~~~~~~l~~~~~~  266 (480)
                      +++++.++.+++..
T Consensus       358 ~~~~al~~~~~~~~  371 (378)
T 3q15_A          358 FYRKVLKAQEDILK  371 (378)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988865

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=2.7e-24  Score=191.35  Aligned_cols=153  Identities=25%  Similarity=0.224  Sum_probs=134.0

Q ss_pred             CCccchhhhcc------------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          314 RAPRSHFLIKR------------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       314 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      |.||||+|+..            .+.+++..+..+.++++.|+..|+.+++++|++.|+++....           ....
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------~~~~   71 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP-----------MTSE   71 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC-----------CCST
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc-----------cccc
Confidence            66677766544            366778888899999999999999999999999999874321           1123


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-------------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS-------------AGWLPLHEAANHGHTDIVQALVSAGADPNDKV  448 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  448 (480)
                      +..|.||||+|+..|+.+++++|++.|++++.++.             .|+||||+|+..|+.+++++|+++|++++  .
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~  149 (232)
T 2rfa_A           72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--A  149 (232)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--C
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--C
Confidence            45699999999999999999999999999998865             79999999999999999999999999999  6


Q ss_pred             CCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC
Q psy875          449 QDSAGWLPLHEAANHGHTDIV----QALVSAGAEV  479 (480)
Q Consensus       449 ~~~~g~tpl~~A~~~~~~~~~----~~Ll~~ga~~  479 (480)
                      +|..|.||||+|+..|+.+++    ++|+++|+++
T Consensus       150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            699999999999999999988    9999999975

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=3e-24  Score=191.68  Aligned_cols=151  Identities=23%  Similarity=0.191  Sum_probs=118.6

Q ss_pred             cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-----------------c-CCCccccCCCCCchHH
Q psy875          328 DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-----------------E-TPTTSLLEKPRGETAL  389 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~g~~~l  389 (480)
                      +++..+..+.++++.|+..|+.+++++|+++|++++..+....+.                 . .+......+..|.|||
T Consensus        36 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  115 (237)
T 3b7b_A           36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM  115 (237)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHH
T ss_pred             CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHH
Confidence            444455556666666666666666666666666655432211110                 1 1133344456699999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875          390 HVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV  469 (480)
Q Consensus       390 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~  469 (480)
                      |+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++
T Consensus       116 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v  193 (237)
T 3b7b_A          116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLHIAARENRYDCV  193 (237)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHhHH
Confidence            99999999999999999999999999999999999999999999999999999999  5689999999999999999999


Q ss_pred             HHHHHcCCCCC
Q psy875          470 QALVSAGAEVS  480 (480)
Q Consensus       470 ~~Ll~~ga~~~  480 (480)
                      ++|+++|++++
T Consensus       194 ~~Ll~~gad~~  204 (237)
T 3b7b_A          194 VLFLSRDSDVT  204 (237)
T ss_dssp             HHHHTTTCCTT
T ss_pred             HHHHHcCCCCC
Confidence            99999999875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=2.5e-24  Score=191.04  Aligned_cols=151  Identities=28%  Similarity=0.337  Sum_probs=133.7

Q ss_pred             ccCCccchhhhccCCC-------------cCCC-CcCCCchHHHHHHhhCcHHHHHHHHhcC--CchhhhhhhhccccCC
Q psy875          312 RKRAPRSHFLIKRNDK-------------DSNL-NLYNIESITISRNRLGAQEVRKLLSLLN--ADLLVHLNLSATLETP  375 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~~a~~~~~~~~v~~L~~~g--~~~~~~~~~~~~~~~~  375 (480)
                      ..|.||||+++..+..             +++. .+..+.++++.|+..|+.+++++|+++|  ++++..          
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------  103 (228)
T 2dzn_A           34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI----------  103 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC----------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC----------
Confidence            3578888888765543             3333 5678889999999999999999999999  666543          


Q ss_pred             CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCC
Q psy875          376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPNDKVQDSAGW  454 (480)
Q Consensus       376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~  454 (480)
                            +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++  ..|..|+
T Consensus       104 ------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~  175 (228)
T 2dzn_A          104 ------TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGW  175 (228)
T ss_dssp             ------CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSC
T ss_pred             ------CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCC
Confidence                  345999999999999999999999999999999999999999999999999999999999 9999  5699999


Q ss_pred             cHHHHHHHcCCHHHHHHHH-HcCCCCC
Q psy875          455 LPLHEAANHGHTDIVQALV-SAGAEVS  480 (480)
Q Consensus       455 tpl~~A~~~~~~~~~~~Ll-~~ga~~~  480 (480)
                      ||||+|+..|+.+++++|+ ++|++++
T Consensus       176 t~L~~A~~~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          176 TPLFHALAEGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence            9999999999999999999 8999975

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=3.2e-24  Score=189.59  Aligned_cols=150  Identities=25%  Similarity=0.236  Sum_probs=110.8

Q ss_pred             ccCCccchhhhccCC------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          312 RKRAPRSHFLIKRND------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      ..|.||+|+++..+.            .+++..+..+.++++.|+..|+.+++++|+++|++++..              
T Consensus        56 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--------------  121 (223)
T 2f8y_A           56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV--------------  121 (223)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB--------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc--------------
Confidence            345566666554432            233444555566666666666666666666666665543              


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                        +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..|..|.||+|+
T Consensus       122 --~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~  197 (223)
T 2f8y_A          122 --DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRDI  197 (223)
T ss_dssp             --CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHH
T ss_pred             --CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHHH
Confidence              3448888888888888888888888888888888888888888888888888888888888888  558888888888


Q ss_pred             HHHcCCHHHHHHHHHcCCCC
Q psy875          460 AANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       460 A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      |+..++.+++++|+++|+..
T Consensus       198 A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          198 AQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCSS
T ss_pred             HHHhcchHHHHHHHHcCCCc
Confidence            88888888888888888764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.5e-25  Score=183.98  Aligned_cols=130  Identities=25%  Similarity=0.312  Sum_probs=116.3

Q ss_pred             CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875          332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV  411 (480)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~  411 (480)
                      ....+.++++.|+..|+.++|++|+++|++++..+                ..|.||||+|+ .|+.+++++|+++|+++
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~   70 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPN----------------SYGRRPIQVMM-MGSARVAELLLLHGAEP   70 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC----------------SSSCCTTTSSC-TTCHHHHHHHHTTTCCC
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------CCCCCHHHHHH-cCCHHHHHHHHHcCCCC
Confidence            34566789999999999999999999999988753                34999999986 89999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          412 KVQDSAGWL-PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       412 ~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +.+|..|+| |||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~  138 (156)
T 1bi7_B           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR  138 (156)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHHHHHHHTCHHHHHHHSSCC----
T ss_pred             CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence            999999999 9999999999999999999999999  569999999999999999999999999999874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.7e-24  Score=179.95  Aligned_cols=135  Identities=27%  Similarity=0.339  Sum_probs=123.0

Q ss_pred             hhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHH
Q psy875          321 LIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTL  400 (480)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~  400 (480)
                      ++...+.+++..+..+.++++. +..|+.+++++|+++|++++..+                ..|.||||+|+..|+.++
T Consensus        21 ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~   83 (156)
T 1bd8_A           21 LLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQD----------------TSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHH
T ss_pred             HHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC----------------CCCCCHHHHHHHcCcHHH
Confidence            3444345777888889999999 99999999999999999988654                349999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy875          401 VQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSA  475 (480)
Q Consensus       401 ~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  475 (480)
                      +++|++.|++++.+|..|+||||+|+..|+.+++++|+++ ++++  ..|..|.||||+|+..|+.+++++|+++
T Consensus        84 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999 8898  6699999999999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=1.6e-24  Score=181.83  Aligned_cols=136  Identities=27%  Similarity=0.306  Sum_probs=122.2

Q ss_pred             ccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHH
Q psy875          323 KRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQ  402 (480)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~  402 (480)
                      ..++.+++..+..+.++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+..|+.++++
T Consensus        29 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~   92 (165)
T 3twr_A           29 TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD----------------KGGLVPLHNACSYGHYEVAE   92 (165)
T ss_dssp             CTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccC----------------CCCCCHHHHHHHcCcHHHHH
Confidence            33455556666777899999999999999999999999988654                35999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875          403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA  477 (480)
Q Consensus       403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  477 (480)
                      +|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+. ++.+++++|+++|+
T Consensus        93 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999  569999999999877 89999999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=5.9e-24  Score=187.89  Aligned_cols=151  Identities=24%  Similarity=0.229  Sum_probs=136.8

Q ss_pred             ccCCccchhh-----------hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCC-chhhhhhhhccccCCCccc
Q psy875          312 RKRAPRSHFL-----------IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNA-DLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       312 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~-~~~~~~~~~~~~~~~~~~~  379 (480)
                      ..|.||||+|           +...+.+++..+..+.++++.|+..|+.+++++|++.|+ +++..+             
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------   89 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-------------   89 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-------------
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------------
Confidence            3466666665           345778889888999999999999999999999999997 666543             


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                         ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+
T Consensus        90 ---~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~  164 (223)
T 2f8y_A           90 ---HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLFL  164 (223)
T ss_dssp             ---TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHH
T ss_pred             ---CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHHH
Confidence               349999999999999999999999999999999999999999999999999999999999999  569999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC
Q psy875          460 AANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       460 A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+..|+.+++++|+++|++++
T Consensus       165 A~~~~~~~~v~~Ll~~ga~~~  185 (223)
T 2f8y_A          165 AAREGSYETAKVLLDHFANRD  185 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCc
Confidence            999999999999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=3.7e-24  Score=177.16  Aligned_cols=141  Identities=22%  Similarity=0.252  Sum_probs=116.8

Q ss_pred             cCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHH
Q psy875          313 KRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVA  392 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a  392 (480)
                      .|+......+...+.+++ .+..+.++++.|+..|+.+++++|++.|++++..+                ..|.||||+|
T Consensus        12 ~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A   74 (153)
T 1awc_B           12 AGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART----------------KVDRTPLHMA   74 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC----------------TTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------CCCCCHHHHH
Confidence            344333333333444554 35678899999999999999999999998887653                3489999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy875          393 AARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL  472 (480)
Q Consensus       393 ~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  472 (480)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998  5588999999999999999999886

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=2.3e-24  Score=185.72  Aligned_cols=134  Identities=26%  Similarity=0.278  Sum_probs=125.4

Q ss_pred             CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q psy875          329 SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQG  408 (480)
Q Consensus       329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g  408 (480)
                      +|..+..+.++++.|+..|+.+++++|++.|++++..+                ..|.||||+|+..|+.+++++|++.|
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g   91 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD----------------IEGSTALIWAVKNNRLGIAEKLLSKG   91 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc----------------ccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            45667788999999999999999999999999987653                34999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       409 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        92 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  161 (192)
T 2rfm_A           92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLIVASKYGRSEIVKKLLELGADIS  161 (192)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999999  569999999999999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=1.1e-24  Score=198.93  Aligned_cols=167  Identities=20%  Similarity=0.189  Sum_probs=136.6

Q ss_pred             hccCCccchhhhcc---CCCcC------------------CC----CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhh
Q psy875          311 NRKRAPRSHFLIKR---NDKDS------------------NL----NLYNIESITISRNRLGAQEVRKLLSLLNADLLVH  365 (480)
Q Consensus       311 ~~~~~~~~~~~~~~---~~~~~------------------~~----~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~  365 (480)
                      +..|.||||+++..   +..++                  +.    .+..+.++|++|+..|+.++|++|+++|++++..
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  130 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA  130 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence            44689999999864   44322                  11    3457889999999999999999999999999876


Q ss_pred             hhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCChHHHHHHHcCC---------HHH
Q psy875          366 LNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK---QGHPVKVQDSAGWLPLHEAANHGH---------TDI  433 (480)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~~~~---------~~~  433 (480)
                      .....  .........+..|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..|+         .++
T Consensus       131 ~~~~~--~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~  208 (273)
T 2pnn_A          131 ANGDF--FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM  208 (273)
T ss_dssp             BCSGG--GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             ccccc--cccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence            53110  0011112223459999999999999999999999   999999999999999999999998         899


Q ss_pred             HHHHHHcCCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CC
Q psy875          434 VQALVSAGADPND-----KVQDSAGWLPLHEAANHGHTDIVQALVSAGA-EV  479 (480)
Q Consensus       434 ~~~Ll~~g~~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga-~~  479 (480)
                      +++|+++|++++.     .++|..|.||||+|+..|+.+++++|+++|+ |+
T Consensus       209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred             HHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence            9999999999973     2368999999999999999999999999999 54

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=5.8e-24  Score=179.14  Aligned_cols=129  Identities=39%  Similarity=0.550  Sum_probs=120.3

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ....++++.|+..|+.++|++|+++|++++..+                ..|.||||+|+..|+.+++++|+++|++++.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   75 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAED----------------ASGWTPLHLAAFNGHLEIVEVLLKNGADVNA   75 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            445688999999999999999999999988653                3499999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++++|+++|++++
T Consensus        76 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  140 (169)
T 2y1l_E           76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN--ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN  140 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999  569999999999999999999999999999874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=6e-24  Score=178.76  Aligned_cols=128  Identities=26%  Similarity=0.226  Sum_probs=120.6

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      .+.++++.|+..|+.+++++|++.|++++..+                ..|.||||+|+..|+.+++++|++.|++++.+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   65 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD----------------EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL   65 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC----------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc
Confidence            46789999999999999999999999887653                35999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +..|.||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           66 GKGRESALSLACSKGYTDIVKMLLDCGVDVN--EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999  569999999999999999999999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.91  E-value=1.8e-24  Score=193.01  Aligned_cols=153  Identities=27%  Similarity=0.263  Sum_probs=136.1

Q ss_pred             hhccCCccchhhhccC---------------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccC
Q psy875          310 TNRKRAPRSHFLIKRN---------------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLET  374 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~  374 (480)
                      .+..|.||||+|+..+               +.+++..+..+.++++.|+..|+.++|++|+++|++++..+..      
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~------   77 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR------   77 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT------
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC------
Confidence            4557888888886432               2368888889999999999999999999999999999987663      


Q ss_pred             CCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Q psy875          375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP------VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV  448 (480)
Q Consensus       375 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  448 (480)
                                |.||||+|+..|+.+++++|++.|++      ++..+..|+||||+|+..|+.+++++|+++|++++  .
T Consensus        78 ----------g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~  145 (236)
T 1ikn_D           78 ----------GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--A  145 (236)
T ss_dssp             ----------CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--C
T ss_pred             ----------CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--C
Confidence                      99999999999999999999999976      46778899999999999999999999999999999  5


Q ss_pred             CCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          449 QDS-AGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       449 ~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++. .|.||||+|+..|+.+++++|+++|++++
T Consensus       146 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN  178 (236)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            576 89999999999999999999999999975

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=2.8e-24  Score=191.27  Aligned_cols=165  Identities=18%  Similarity=0.150  Sum_probs=137.5

Q ss_pred             ccCCccchhhhccCCCcC----------------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCC
Q psy875          312 RKRAPRSHFLIKRNDKDS----------------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETP  375 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~  375 (480)
                      ..|.||||+++..+..++                +..+..+.++++.|+..|+.+++++|+++|++++........   .
T Consensus        35 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~---~  111 (232)
T 2rfa_A           35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF---H  111 (232)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG---S
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce---e
Confidence            358889998887765432                334557889999999999999999999999999876432111   1


Q ss_pred             CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHH----HHHHHcCCCCCC----c
Q psy875          376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIV----QALVSAGADPND----K  447 (480)
Q Consensus       376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~----~~Ll~~g~~~~~----~  447 (480)
                      ......+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++    ++|+++|++++.    .
T Consensus       112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~  191 (232)
T 2rfa_A          112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL  191 (232)
T ss_dssp             CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGG
T ss_pred             ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhc
Confidence            11222345699999999999999999999999999999999999999999999999988    999999998831    1


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          448 VQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       448 ~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      ..|..|.||||+|+..|+.+++++|+++|+.+
T Consensus       192 ~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          192 VPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            45889999999999999999999999998754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=8.8e-24  Score=174.91  Aligned_cols=126  Identities=30%  Similarity=0.467  Sum_probs=117.9

Q ss_pred             CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875          336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD  415 (480)
Q Consensus       336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~  415 (480)
                      ..++++.|+..|+.++|++|++.|++++.                 +..|.||||+|+..|+.+++++|++.|++++.++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   64 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT-----------------DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART   64 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-----------------CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            35789999999999999999999998753                 2349999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  127 (153)
T 1awc_B           65 KVDRTPLHMAASEGHANIVEVLLKHGADVN--AKDMLKMTALHWATEHNHQEVVELLIKYGADVH  127 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            999999999999999999999999999999  569999999999999999999999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=1e-23  Score=193.40  Aligned_cols=148  Identities=21%  Similarity=0.195  Sum_probs=120.8

Q ss_pred             cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||||+++..+           +.+++..+..+.++++.|+..|+.+++++|++.|++++..                
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------------  154 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE----------------  154 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS----------------
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC----------------
Confidence            4566666665443           3344555666667777777777777777777777666532                


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                       ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  . +..|.||||+|+
T Consensus       155 -~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~-~~~g~t~L~~A~  230 (285)
T 3d9h_A          155 -SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLHAVV  230 (285)
T ss_dssp             -CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--C-CBTTBCHHHHHH
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--C-CCCCCCHHHHHH
Confidence             238999999999999999999999999999999999999999999999999999999999998  2 778999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC
Q psy875          462 NHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ..|+.+++++|+++|++++
T Consensus       231 ~~~~~~~v~~Ll~~gad~~  249 (285)
T 3d9h_A          231 RTASEELACLLMDFGADTQ  249 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTT
T ss_pred             HcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=1.6e-24  Score=196.32  Aligned_cols=165  Identities=19%  Similarity=0.127  Sum_probs=134.4

Q ss_pred             ccCCccchhhh---ccCCCcC----------------------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhh
Q psy875          312 RKRAPRSHFLI---KRNDKDS----------------------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHL  366 (480)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~----------------------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~  366 (480)
                      ..|.||||+|+   ..+..++                      +..+..+.++|++|+..|+.++|++|+++|++++..+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  123 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA  123 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence            35888999887   3344332                      2223378899999999999999999999999998765


Q ss_pred             hhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCChHHHHHHHcCC---------HHHH
Q psy875          367 NLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK---QGHPVKVQDSAGWLPLHEAANHGH---------TDIV  434 (480)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~~~~---------~~~~  434 (480)
                      .-.  ...+......+..|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..++         .+++
T Consensus       124 ~~~--~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          124 RGR--FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             EEC--CCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             ccc--ccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            310  01111111222459999999999999999999999   999999999999999999999888         7999


Q ss_pred             HHHHHcCCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          435 QALVSAGADPND-----KVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       435 ~~Ll~~g~~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      ++|+++|++++.     ...|..|.||||+|+..|+.+++++|+++|++
T Consensus       202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999942     25699999999999999999999999999874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.91  E-value=6.4e-22  Score=190.94  Aligned_cols=232  Identities=19%  Similarity=0.239  Sum_probs=207.6

Q ss_pred             hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      ......+.++..+|.++...|++++|+.++++++.+.  .++.+..+.++..+|.+|... |++++|+.++++++.+.+.
T Consensus        41 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           41 EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Confidence            3455668899999999999999999999999999986  445566788999999995555 9999999999999999998


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHh
Q psy875          109 NKDDKLIRTVMRSIKKLYKKHDN--------------------LDSACSELHTVLSSDLC----KDLASCYISLAQTYKD  164 (480)
Q Consensus       109 ~~~~~~~~~~~~~l~~~y~~~~~--------------------~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~  164 (480)
                      .++......++.++|.+|...|+                    +++|+.++++++.....    +..+.++.++|.+|..
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  199 (406)
T 3sf4_A          120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL  199 (406)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999                    99999999988765332    4457789999999999


Q ss_pred             hccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875          165 NKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK  242 (480)
Q Consensus       165 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  242 (480)
                      +|++++|+.++++++++...  ++...+.++.++|.++...|+ +++|+.++++++.+....++......++..+|.+|.
T Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  278 (406)
T 3sf4_A          200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  278 (406)
T ss_dssp             HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence            99999999999999998665  456677899999999999999 999999999999999999988888999999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHHhh
Q psy875          243 KHDKFTELEQIKTELKSLEEKL  264 (480)
Q Consensus       243 ~~g~~~~A~~~~~~~~~l~~~~  264 (480)
                      .+|++++|..+++++.++..+.
T Consensus       279 ~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          279 LLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999887764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=3.2e-24  Score=193.85  Aligned_cols=163  Identities=19%  Similarity=0.150  Sum_probs=135.9

Q ss_pred             hccCCccchhhhcc---CCCcC-----------CC-----------CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhh
Q psy875          311 NRKRAPRSHFLIKR---NDKDS-----------NL-----------NLYNIESITISRNRLGAQEVRKLLSLLNADLLVH  365 (480)
Q Consensus       311 ~~~~~~~~~~~~~~---~~~~~-----------~~-----------~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~  365 (480)
                      +..|.||||+|+..   +..++           +.           .+..+.++++.|+..|+.++|++|+++|++++..
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  119 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR  119 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence            34688999999887   65543           11           1256889999999999999999999999999876


Q ss_pred             hhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCChHHHHHHH--cCCHH-------H
Q psy875          366 LNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLK---QGHPVKVQDSAGWLPLHEAAN--HGHTD-------I  433 (480)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~--~~~~~-------~  433 (480)
                      +.....   +......+..|.||||+|+..|+.+++++|++   .|+++|.+|..|+||||+|+.  .++.+       +
T Consensus       120 ~~~~~~---~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i  196 (256)
T 2etb_A          120 ACGRFF---QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM  196 (256)
T ss_dssp             CCSGGG---SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             cccccc---cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence            432110   11111222339999999999999999999999   999999999999999999999  78888       9


Q ss_pred             HHHHHHcCCCC-------CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          434 VQALVSAGADP-------NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       434 ~~~Ll~~g~~~-------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      +++|+++|+++       +  .+|..|.||||+|+..|+.+++++|+++|++
T Consensus       197 v~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          197 YDGLLQMGARLCPTVQLEE--ISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHHHHHHHHHSTTCCGGG--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccccccccc--ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            99999999999       6  5699999999999999999999999999864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=192.60  Aligned_cols=152  Identities=23%  Similarity=0.183  Sum_probs=136.7

Q ss_pred             hhccCCccchhhhccCC-----------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875          310 TNRKRAPRSHFLIKRND-----------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS  378 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~  378 (480)
                      .+..|.||||+++..+.           .+++..+..+.++|+.|+..|+.++|++|+++|++++..+            
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~------------  122 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT------------  122 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCC------------
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC------------
Confidence            34568888888876654           5667778889999999999999999999999999988653            


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875          379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH  458 (480)
Q Consensus       379 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~  458 (480)
                          ..|.||||+|+..|+.+++++|++.|++++..+ .|.||||+|+..|+.+++++|+++|++++  ..|..|.||||
T Consensus       123 ----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~  195 (285)
T 3d9h_A          123 ----ADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY  195 (285)
T ss_dssp             ----TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH
T ss_pred             ----CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH
Confidence                349999999999999999999999999998654 59999999999999999999999999999  56999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Q psy875          459 EAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|+..|+.+++++|+++|++++
T Consensus       196 ~A~~~~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          196 LACENQQRACVKKLLESGADVN  217 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHcCcHHHHHHHHHCCCCCC
Confidence            9999999999999999999975

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.91  E-value=1.7e-23  Score=185.99  Aligned_cols=149  Identities=23%  Similarity=0.271  Sum_probs=133.8

Q ss_pred             CCccchhhhccCC------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          314 RAPRSHFLIKRND------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       314 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      +++|+|.++..+.            ..++..+..+.++++.|+..|+.++|++|+++|++++..+               
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------------   70 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD---------------   70 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC---------------
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC---------------
Confidence            4556666655543            3456667889999999999999999999999999987653               


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                       ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.||||+|+
T Consensus        71 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~  147 (231)
T 3aji_A           71 -DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRAA  147 (231)
T ss_dssp             -TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHH
T ss_pred             -CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHHHHH
Confidence             349999999999999999999999999999999999999999999999999999999999999  56899999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC
Q psy875          462 NHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ..|+.+++++|+++|++++
T Consensus       148 ~~~~~~~v~~Ll~~g~~~~  166 (231)
T 3aji_A          148 AKGNLKMVHILLFYKASTN  166 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCSC
T ss_pred             HcCCHHHHHHHHhcCCCcc
Confidence            9999999999999999875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.91  E-value=7e-22  Score=191.33  Aligned_cols=231  Identities=18%  Similarity=0.225  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      .....+.+++.+|.+|...|++++|+.++++++++.  .++.+....++..+|.+|... |++++|+.++++++.+....
T Consensus        81 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~  159 (411)
T 4a1s_A           81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQL  159 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHh
Confidence            445567899999999999999999999999999986  444567788999999995555 99999999999999999888


Q ss_pred             CCchHHHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccH
Q psy875          110 KDDKLIRTVMRSIKKLYKKHDN-----------------LDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus       110 ~~~~~~~~~~~~l~~~y~~~~~-----------------~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~  168 (480)
                      ++.+....++.++|.+|...|+                 +++|+.++++++.....    +..+.++.++|.+|..+|++
T Consensus       160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  239 (411)
T 4a1s_A          160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF  239 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            8888889999999999999999                 99999999988765432    44577899999999999999


Q ss_pred             HHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875          169 NLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK  246 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  246 (480)
                      ++|+.++++++++...  +......++.++|.++..+|+ +++|+.++++++.+....++......++..++.+|..+|+
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (411)
T 4a1s_A          240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE  318 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999998665  556667799999999999999 9999999999999999988888889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhh
Q psy875          247 FTELEQIKTELKSLEEKL  264 (480)
Q Consensus       247 ~~~A~~~~~~~~~l~~~~  264 (480)
                      +++|..+++++..+....
T Consensus       319 ~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          319 FNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHC
Confidence            999999999999987765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.91  E-value=1.7e-23  Score=185.62  Aligned_cols=152  Identities=22%  Similarity=0.218  Sum_probs=131.7

Q ss_pred             CCccchhhhccCCCc------------CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          314 RAPRSHFLIKRNDKD------------SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      |+||||+++..+..+            ++..+..+.+++++|+..|+.+++++|++.|++++...             ..
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~   68 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD-------------YP   68 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG-------------CC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc-------------cC
Confidence            567777776665442            34467888999999999999999999999995554332             02


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQG--HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                      +..|.||||+|+..|+.+++++|++.|  ++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.||||+
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~  146 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLHR  146 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHHH
Confidence            345999999999999999999999998  8899999999999999999999999999999999999  569999999999


Q ss_pred             HHHcCCHHHHHHHHHcC-CCCC
Q psy875          460 AANHGHTDIVQALVSAG-AEVS  480 (480)
Q Consensus       460 A~~~~~~~~~~~Ll~~g-a~~~  480 (480)
                      |+..|+.+++++|+++| ++++
T Consensus       147 A~~~~~~~~v~~Ll~~g~~~~~  168 (228)
T 2dzn_A          147 AASVGSLKLIELLCGLGKSAVN  168 (228)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCSC
T ss_pred             HHHcCCHHHHHHHHhcCccccc
Confidence            99999999999999999 7764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.91  E-value=2.6e-23  Score=180.57  Aligned_cols=93  Identities=31%  Similarity=0.469  Sum_probs=67.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCCCCCCccCCCCCCc
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGH-----TDIVQALVSAGADPNDKVQDSAGWL  455 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~g~~~~~~~~~~~g~t  455 (480)
                      +..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..+.     .+++++|+++|++++  .+|..|.|
T Consensus       103 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t  180 (201)
T 3hra_A          103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRT  180 (201)
T ss_dssp             CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCC
Confidence            334777777777777777777777776 6777777777777777777766     777777777777777  44777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC
Q psy875          456 PLHEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       456 pl~~A~~~~~~~~~~~Ll~~g  476 (480)
                      |||+|+..|+.+++++|+++|
T Consensus       181 ~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          181 AMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHhHHHHHHhcC
Confidence            777777777777777777765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=3e-23  Score=192.05  Aligned_cols=151  Identities=26%  Similarity=0.317  Sum_probs=130.1

Q ss_pred             ccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHH
Q psy875          312 RKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHV  391 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~  391 (480)
                      ..|+......+...+.+++..+..+.++++.|+..|+.++|++|+++|++++..+                ..|.||||+
T Consensus        49 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~----------------~~g~tpL~~  112 (299)
T 1s70_B           49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD----------------NEGWIPLHA  112 (299)
T ss_dssp             HHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------CCCCcHHHH
Confidence            3444444444445567788888889999999999999999999999999987653                349999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCC-------------------------------------------------------
Q psy875          392 AAARGNLTLVQSLLKQGHPVKVQDS-------------------------------------------------------  416 (480)
Q Consensus       392 a~~~~~~~~~~~ll~~g~~~~~~~~-------------------------------------------------------  416 (480)
                      |+..|+.+++++|+++|++++.++.                                                       
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999998876653                                                       


Q ss_pred             -----CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          417 -----AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       417 -----~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                           .|.||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~  259 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLHAAAHWGKEEACRILVENLCDME  259 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence                 46788999999999999999999999999  569999999999999999999999999999975

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=1.6e-21  Score=182.76  Aligned_cols=257  Identities=17%  Similarity=0.202  Sum_probs=216.2

Q ss_pred             hhHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHH
Q psy875            3 FKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGE   80 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~   80 (480)
                      +..++..|.. .+++......+.+  ........+.++..+|.++...|++++|++++++++++.  .++.+....++..
T Consensus        12 g~~~~~~g~~-~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           12 GERLCKSGDC-RAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhccH-HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            3444444444 3333333222332  233445567899999999999999999999999999986  4455667888999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q psy875           81 IGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN--------------------LDSACSELH  140 (480)
Q Consensus        81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~--------------------~~~A~~~~~  140 (480)
                      +|.+|... |++++|+.++++++.+.+..++......++..+|.+|...|+                    +++|+.+++
T Consensus        89 l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           89 LGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99995555 999999999999999999888888889999999999999999                    999999999


Q ss_pred             HHhcccc----cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875          141 TVLSSDL----CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTH  214 (480)
Q Consensus       141 ~~l~~~~----~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  214 (480)
                      +++....    .+....++.++|.+|...|++++|+.++++++++...  ++.....++..+|.++...|+ +++|+.++
T Consensus       168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~  246 (338)
T 3ro2_A          168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETASEYY  246 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            8875432    2445778999999999999999999999999998655  456677899999999999999 99999999


Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875          215 EKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL  264 (480)
Q Consensus       215 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~  264 (480)
                      ++++.+....++......++..++.++..+|++++|..+++++.++....
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            99999999998888889999999999999999999999999999887665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=1.5e-24  Score=193.63  Aligned_cols=149  Identities=21%  Similarity=0.222  Sum_probs=117.3

Q ss_pred             cCCccchhhhccCCCc-----------CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRNDKD-----------SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||||.++..+..+           ++.. ..+.++++.|+..|+.++|++|++.|++++..+               
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d---------------   67 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN---------------   67 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC---------------
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC---------------
Confidence            4777777776665443           3332 445799999999999999999999999988754               


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC-cHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW-LPLHEA  460 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~-tpl~~A  460 (480)
                       ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++  ..+..|. ||||+|
T Consensus        68 -~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           68 -DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAADKC  144 (239)
T ss_dssp             -TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHHHC
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHHHH
Confidence             349999999999999999999999999999999999999999999999999999999999999  4576666 999999


Q ss_pred             --HHcCCHHHHHHHHHcCCCCC
Q psy875          461 --ANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       461 --~~~~~~~~~~~Ll~~ga~~~  480 (480)
                        +..|+.+++++|+++|++++
T Consensus       145 ~~~~~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          145 EEMEEGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             CSSSTTCCCHHHHHHHHHHHTT
T ss_pred             HHhhhccHHHHHHHHHhhhccc
Confidence              78899999999999998763

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.90  E-value=1.9e-23  Score=181.39  Aligned_cols=146  Identities=22%  Similarity=0.234  Sum_probs=132.7

Q ss_pred             cchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcC
Q psy875          317 RSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARG  396 (480)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~  396 (480)
                      .+..++..++.+++..+..+.++++.|+..|+.++|++|+++|++++..+.                .|.||||+|+..|
T Consensus        20 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------~g~t~l~~A~~~~   83 (201)
T 3hra_A           20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS----------------ISDSPYLYAGAQG   83 (201)
T ss_dssp             HHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------TSCCHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------------CCCCHHHHHHHcC
Confidence            344456667778998889999999999999999999999999999987543                4999999999999


Q ss_pred             CHHHHHHHH-hcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCCcHHHHHHHcCC-----HHHH
Q psy875          397 NLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPNDKVQDSAGWLPLHEAANHGH-----TDIV  469 (480)
Q Consensus       397 ~~~~~~~ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~tpl~~A~~~~~-----~~~~  469 (480)
                      +.+++++|+ ..+++++.++..|.||||+|+..|+.+++++|+++| ++++  .+|..|.||||+|+..++     .+++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            999999999 557899999999999999999999999999999999 8999  569999999999999998     9999


Q ss_pred             HHHHHcCCCCC
Q psy875          470 QALVSAGAEVS  480 (480)
Q Consensus       470 ~~Ll~~ga~~~  480 (480)
                      ++|+++|++++
T Consensus       162 ~~Ll~~ga~~~  172 (201)
T 3hra_A          162 KLLMENGADQS  172 (201)
T ss_dssp             HHHHHTTCCTT
T ss_pred             HHHHHCCCCCC
Confidence            99999999985

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=3e-24  Score=194.09  Aligned_cols=147  Identities=23%  Similarity=0.214  Sum_probs=125.4

Q ss_pred             CCcCCC----CcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCH
Q psy875          326 DKDSNL----NLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNL  398 (480)
Q Consensus       326 ~~~~~~----~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~  398 (480)
                      +.+++.    .+..+.+++++|+..   |+.++|++|++.|++++.......     ......+..|.||||+|+..|+.
T Consensus        29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~-----~~~~~~d~~g~t~L~~A~~~g~~  103 (256)
T 2etb_A           29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN-----AQCTDEFYQGHSALHIAIEKRSL  103 (256)
T ss_dssp             TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG-----CCCCSTTTTTCCHHHHHHHTTCH
T ss_pred             CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc-----cccccccccCCCHHHHHHHcCCH
Confidence            344555    677899999999999   999999999999998874321100     01112234599999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCC-------------CChHHHHHHHcCCHHHHHHHHH---cCCCCCCccCCCCCCcHHHHHHH
Q psy875          399 TLVQSLLKQGHPVKVQDSA-------------GWLPLHEAANHGHTDIVQALVS---AGADPNDKVQDSAGWLPLHEAAN  462 (480)
Q Consensus       399 ~~~~~ll~~g~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~g~tpl~~A~~  462 (480)
                      +++++|+++|++++.++..             |+||||+|+..|+.+++++|++   +|++++  .+|..|+||||+|+.
T Consensus       104 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n--~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE--ATDSLGNTVLHALVM  181 (256)
T ss_dssp             HHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT--CCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC--ccCCCCCCHHHHHHH
Confidence            9999999999999999876             9999999999999999999999   999999  669999999999999


Q ss_pred             --cCCHH-------HHHHHHHcCCCC
Q psy875          463 --HGHTD-------IVQALVSAGAEV  479 (480)
Q Consensus       463 --~~~~~-------~~~~Ll~~ga~~  479 (480)
                        .++.+       ++++|+++|+++
T Consensus       182 ~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          182 IADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCchhhHHHHHHHHHHHHcCCCc
Confidence              88988       999999999876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=1.9e-23  Score=199.37  Aligned_cols=165  Identities=21%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             cCCccchhhhccCC-------------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-
Q psy875          313 KRAPRSHFLIKRND-------------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-  372 (480)
Q Consensus       313 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-  372 (480)
                      .|.||||+|+..+.                   .++|..+..+.++|+.|+..|+.++|++|+++|++++..+..+.+. 
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L  203 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  203 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHH
Confidence            56777777765443                   3455566677777777777777777777777777776543221110 


Q ss_pred             ----------------cCC---CccccCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCCC--------CCCCCChHH
Q psy875          373 ----------------ETP---TTSLLEKPRGETALHVAAARG---NLTLVQSLLKQGHPVKV--------QDSAGWLPL  422 (480)
Q Consensus       373 ----------------~~~---~~~~~~~~~g~~~l~~a~~~~---~~~~~~~ll~~g~~~~~--------~~~~g~t~l  422 (480)
                                      ...   ......+..|.||||+|+..+   +.+++++|++.|++++.        .|..|+|||
T Consensus       204 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L  283 (373)
T 2fo1_E          204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  283 (373)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             HHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH
Confidence                            111   223334455666666666655   55666666666666554        344566666


Q ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          423 HEAANHGHTDIVQALVSAG-ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       423 ~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      |+|+..|+.+++++|+++| ++++  .+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       284 h~A~~~g~~~~v~~Ll~~~~~~~n--~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  339 (373)
T 2fo1_E          284 HYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV  339 (373)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHhCCHHHHHHHHHhcCCCcc--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            6666666666666666553 5665  34566666666666666666666666666655

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=191.87  Aligned_cols=148  Identities=24%  Similarity=0.241  Sum_probs=131.8

Q ss_pred             hccCCccchhhhccCC------------CcCCCCcCCCchHHHHHH-----hhCcHHHHHHHHhcCCchhhhhhhhcccc
Q psy875          311 NRKRAPRSHFLIKRND------------KDSNLNLYNIESITISRN-----RLGAQEVRKLLSLLNADLLVHLNLSATLE  373 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~a~-----~~~~~~~v~~L~~~g~~~~~~~~~~~~~~  373 (480)
                      +..|.||||+|+..+.            .+++..+..+.++++.|+     ..++.+++++|++.|.+++..+       
T Consensus       108 d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-------  180 (276)
T 4hbd_A          108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS-------  180 (276)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT-------
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC-------
Confidence            3458888888765543            377788888899999998     7799999999999997776543       


Q ss_pred             CCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCC
Q psy875          374 TPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSA  452 (480)
Q Consensus       374 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~  452 (480)
                               ..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++ .|++++  ..|..
T Consensus       181 ---------~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~  249 (276)
T 4hbd_A          181 ---------QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRD  249 (276)
T ss_dssp             ---------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTT
T ss_pred             ---------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCC
Confidence                     349999999999999999999999999999999999999999999999999999999 899999  56999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC
Q psy875          453 GWLPLHEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       453 g~tpl~~A~~~~~~~~~~~Ll~~g  476 (480)
                      |.||||+|+..|+.+++++|++++
T Consensus       250 g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          250 GSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999876

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.8e-21  Score=180.64  Aligned_cols=228  Identities=18%  Similarity=0.286  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--h--ccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--A--RNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~--~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      .+..+.++..+|.++...|++++|+.++++++++.  .  .+.+....++..+|.+|... |++++|+.++++++.+...
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999986  2  25677888999999995555 9999999999999998766


Q ss_pred             C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      .  ++.+....++.++|.+|...|++++|+.+|++++...      ..+....++.++|.+|...|++++|+.+++++++
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5  5667788999999999999999999999999998763      2355678899999999999999999999999999


Q ss_pred             hhhc----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-------------------------------
Q psy875          181 LHAR----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-------------------------------  225 (480)
Q Consensus       181 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------  225 (480)
                      +...    +.+....++..+|.++...|+ +++|+.++++++.+.....                               
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF  260 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence            8554    377888999999999999999 9999999999998765421                               


Q ss_pred             ------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          226 ------------DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       226 ------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                                  ..+....++..+|.+|..+|++++|..+++++.++..
T Consensus       261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                        4577788999999999999999999999999998754

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=3.7e-23  Score=174.78  Aligned_cols=127  Identities=27%  Similarity=0.228  Sum_probs=116.5

Q ss_pred             CchHHHHHHhhCcHHHHHHHHhcCCc-hhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          336 IESITISRNRLGAQEVRKLLSLLNAD-LLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       336 ~~~~~~~a~~~~~~~~v~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      ..++++.|+..|+.++++.|++.|.+ ++..                +..|.||||+|+..|+.+++++|+++|++++.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   65 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP----------------DERGFTPLIWASAFGEIETVRFLLEWGADPHIL   65 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC----------------CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC----------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh
Confidence            35788999999999999999999977 4433                345999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  129 (172)
T 3v30_A           66 AKERESALSLASTGGYTDIVGLLLERDVDIN--IYDWNGGTPLLYAVRGNHVKCVEALLARGADLT  129 (172)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            9999999999999999999999999999999  569999999999999999999999999999975

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=7.7e-24  Score=194.21  Aligned_cols=148  Identities=16%  Similarity=0.124  Sum_probs=130.7

Q ss_pred             CCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCC
Q psy875          314 RAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEK  382 (480)
Q Consensus       314 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~  382 (480)
                      |.||||+|+..+           +.+++..+..+.+++++|+..|+.+++++|+++|++++..+.               
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---------------  126 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK---------------  126 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS---------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC---------------
Confidence            667777766554           556777788899999999999999999999999999987643               


Q ss_pred             CCC-chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcH-HHHH
Q psy875          383 PRG-ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLP-LHEA  460 (480)
Q Consensus       383 ~~g-~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp-l~~A  460 (480)
                       .| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.+++++|+++|++++  ..|..|.|| ||+|
T Consensus       127 -~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~~A  202 (285)
T 3kea_A          127 -TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIKLA  202 (285)
T ss_dssp             -SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHHHH
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHHHH
Confidence             37 79999999999999999999999887332 289999999999999999999999999999  569999998 9999


Q ss_pred             HHcCCHHHHHHHHHcCCCCC
Q psy875          461 ANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       461 ~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +..|+.+++++|+++|++++
T Consensus       203 ~~~~~~~~v~~Ll~~gad~~  222 (285)
T 3kea_A          203 IDNKDIEMLQALFKYDINIY  222 (285)
T ss_dssp             HHHTCHHHHHHHTTSCBCST
T ss_pred             HHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.90  E-value=5e-23  Score=175.21  Aligned_cols=128  Identities=33%  Similarity=0.416  Sum_probs=116.2

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ...++++.|+..|+.++|++|++. +.+++..                +..|.||||+|+..|+.+++++|++.|++++.
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   67 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG----------------DDHGFSPLHWACREGRSAVVEMLIMRGARINV   67 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCC----------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCccccccc----------------CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence            456788999999999999999998 4555543                34599999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  132 (179)
T 3f6q_A           68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN--AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS  132 (179)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            99999999999999999999999999999999  569999999999999999999999999999875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.90  E-value=2.6e-23  Score=187.50  Aligned_cols=147  Identities=25%  Similarity=0.231  Sum_probs=129.9

Q ss_pred             cCCccchhhhcc------------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875          313 KRAPRSHFLIKR------------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL  380 (480)
Q Consensus       313 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~  380 (480)
                      .|.||||+++..            +..+++..+..+.++++.|+..|+.+++++|++.|++++..+              
T Consensus        89 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d--------------  154 (253)
T 1yyh_A           89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD--------------  154 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC--------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC--------------
Confidence            467777777654            334667777888999999999999999999999999988654              


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                        ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||+++|
T Consensus       155 --~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A  230 (253)
T 1yyh_A          155 --DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRDIA  230 (253)
T ss_dssp             --TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHH
T ss_pred             --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--ccccCCCCHHHHH
Confidence              349999999999999999999999999999999999999999999999999999999999999  6699999999999


Q ss_pred             HHcCCHHHHHHHHHcCC
Q psy875          461 ANHGHTDIVQALVSAGA  477 (480)
Q Consensus       461 ~~~~~~~~~~~Ll~~ga  477 (480)
                      +..|+.+|+++|.....
T Consensus       231 ~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          231 QERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHTTCHHHHHHHHC---
T ss_pred             HHcCCHHHHHHHHHHhh
Confidence            99999999999987543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=8.2e-24  Score=201.60  Aligned_cols=130  Identities=19%  Similarity=0.135  Sum_probs=121.9

Q ss_pred             CcCCCchHHHHHHhhC--cHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q psy875          332 NLYNIESITISRNRLG--AQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGH  409 (480)
Q Consensus       332 ~~~~~~~~~~~a~~~~--~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~  409 (480)
                      .+..+.+++++|+..|  +.++|++|+++|++++..+                ..|.||||+|+..|+.+++++|++.|+
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d----------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~  197 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD----------------KADETPLMRAMEFRNREALDLMMDTVP  197 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            5667889999999999  9999999999999998754                349999999999999999999999999


Q ss_pred             C-----CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          410 P-----VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       410 ~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +     ++..|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       198 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~--~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          198 SKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN--MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             ccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            8     99999999999999999999999999999999999  66999999999999999999999999998753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=6e-24  Score=187.98  Aligned_cols=132  Identities=28%  Similarity=0.277  Sum_probs=122.1

Q ss_pred             CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875          331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP  410 (480)
Q Consensus       331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~  410 (480)
                      ..+.++.++++.|+..|+.++|++|++.|++++..+                ..|.||||+|+..|+.+++++|++.|++
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d----------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN----------------EEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCC----------------CCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            456677889999999999999999999999988753                3599999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCCC
Q psy875          411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPLHEA--ANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl~~A--~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|.+|..|+||||+|+..|+.+++++|+++|++++.  .+ ..|.||||+|  +..|+.+++++|+++|++++
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~--~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~  150 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA--TTLSDGATAFEKCDPYREGYADCATYLADVEQSMG  150 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc
Confidence            999999999999999999999999999999999994  45 6999999999  99999999999999998874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=7.4e-23  Score=193.89  Aligned_cols=167  Identities=26%  Similarity=0.222  Sum_probs=140.3

Q ss_pred             ccCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc---------
Q psy875          312 RKRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT---------  371 (480)
Q Consensus       312 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~---------  371 (480)
                      ..|.||||+++..+           +.+++..+..+.++++.|+..|+.+++++|+++|++++........         
T Consensus        89 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A           89 KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHH
T ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhh
Confidence            34778888877654           4566777788899999999999999999999999998764322111         


Q ss_pred             -----------------------------ccCCCccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCC
Q psy875          372 -----------------------------LETPTTSLLEKPRGETALHVAAAR---GNLTLVQSLLKQGHPVKVQDSAGW  419 (480)
Q Consensus       372 -----------------------------~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~  419 (480)
                                                   +.........+..|.||||+|+..   +..+++++|++.|++++.+|..|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~  248 (351)
T 3utm_A          169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM  248 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCC
Confidence                                         011122223456699999999999   558999999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          420 LPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       420 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       249 t~L~~A~~~g~~~~v~~Ll~~ga~~n--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  307 (351)
T 3utm_A          249 TPLHVAAERAHNDVMEVLHKHGAKMN--ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS  307 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999  669999999999999999999999999999975

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=1e-23  Score=192.45  Aligned_cols=163  Identities=22%  Similarity=0.211  Sum_probs=135.1

Q ss_pred             hhccCCccchhhhccCCCcCC-------------------CCcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhh
Q psy875          310 TNRKRAPRSHFLIKRNDKDSN-------------------LNLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLN  367 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~  367 (480)
                      .+..|.||||.|+..+..+.-                   ..+..+.++|++|+..   |+.++|++|++.|++++....
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            455688899999888877642                   2256889999999986   999999999999987543211


Q ss_pred             hhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--------------CCChHHHHHHHcCCHHH
Q psy875          368 LSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS--------------AGWLPLHEAANHGHTDI  433 (480)
Q Consensus       368 ~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~--------------~g~t~l~~a~~~~~~~~  433 (480)
                      ..   .  ......+..|.||||+|+..|+.+++++|+++|++++.++.              .|+||||+|+..|+.++
T Consensus        89 ~i---~--~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           89 FV---N--ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             HH---T--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             Hh---h--cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence            00   0  00111244699999999999999999999999999999987              79999999999999999


Q ss_pred             HHHHHH---cCCCCCCccCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC
Q psy875          434 VQALVS---AGADPNDKVQDSAGWLPLHEAANHGH---------TDIVQALVSAGAEV  479 (480)
Q Consensus       434 ~~~Ll~---~g~~~~~~~~~~~g~tpl~~A~~~~~---------~~~~~~Ll~~ga~~  479 (480)
                      +++|++   +|++++  .+|..|+||||+|+..|+         .+++++|+++|+++
T Consensus       164 v~~Ll~~~~~gad~~--~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          164 VKFLLQNSWQPADIS--ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL  219 (273)
T ss_dssp             HHHHHHCSSCCCCTT--CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCce--eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence            999999   999999  669999999999999998         89999999999876

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=4.1e-23  Score=201.81  Aligned_cols=150  Identities=30%  Similarity=0.395  Sum_probs=116.8

Q ss_pred             cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||+|+++..+           +.+++..+..+.++++.|+..|+.++|++|+++|++++..+               
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---------------  275 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN---------------  275 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC---------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCC---------------
Confidence            3566666665543           34556666777788888888888888888888888776543               


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                       ..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+
T Consensus       276 -~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~L~~A~  352 (437)
T 1n11_A          276 -KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN--AKTKLGYSPLHQAA  352 (437)
T ss_dssp             -TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT--CCCTTSCCHHHHHH
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC--CCCCCCCCHHHHHH
Confidence             347888888888888888888888888888888888888888888888888888888888888  55778888888888


Q ss_pred             HcCCHHHHHHHHHcCCCCC
Q psy875          462 NHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ..|+.+++++|+++|++++
T Consensus       353 ~~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          353 QQGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             HTTCHHHHHHHHHTTCCSC
T ss_pred             HCChHHHHHHHHHCcCCCC
Confidence            8888888888888888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.90  E-value=2.5e-21  Score=185.71  Aligned_cols=216  Identities=13%  Similarity=0.157  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-chH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-DKL  114 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~~~  114 (480)
                      ..++.+|.++...|++++|+.+|++|+++.  .++.+..+.++..+|.+|+.. |++++|+.++++|+.+.+..++ .+.
T Consensus       104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchHH
Confidence            356679999999999999999999999985  344555788999999996555 9999999999999999998887 788


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-Cc-HH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NF-PE  188 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~-~~  188 (480)
                      .+.++.++|.+|..+|++++|+.+|++++...+.    +..+.++.++|.+|..+|++++|+.++++++++... .. +.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            8899999999999999999999999999876543    345778999999999999999999999999998665 23 77


Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q psy875          189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK---FTELEQIKTE  256 (480)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~  256 (480)
                      .+.++.++|.++..+|+ +++|..++++++.+.+..+++..... +..++.+|...|+   +++|+.++++
T Consensus       263 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            79999999999999999 99999999999999998888776655 6779999999999   5555555543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=4.8e-23  Score=172.85  Aligned_cols=130  Identities=32%  Similarity=0.459  Sum_probs=116.8

Q ss_pred             cCCCchHHHHHHhhCcHHHHHHHHhcCC-chhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875          333 LYNIESITISRNRLGAQEVRKLLSLLNA-DLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV  411 (480)
Q Consensus       333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~  411 (480)
                      +..+.++++.|+..|+.++++.|++.+. +++.                .+..|.||||+|+..|+.+++++|+++|+++
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   68 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD----------------IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV   68 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC----------------TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccc----------------cccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            3456789999999999999999998543 3332                2345899999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  135 (165)
T 3twr_A           69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEICKLLLQHGADPT  135 (165)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999999999  569999999999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.90  E-value=3.1e-23  Score=173.46  Aligned_cols=126  Identities=33%  Similarity=0.397  Sum_probs=117.6

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ  414 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~  414 (480)
                      ...++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+. |+.+++++|++.|++++.+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~   66 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQN----------------GFGRTALQVMKL-GNPEIARRLLLRGANPDLK   66 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC----------------TTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccC----------------ccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC
Confidence            45689999999999999999999999987653                349999999999 9999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          415 DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       415 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      |..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  129 (162)
T 1ihb_A           67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN  129 (162)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999  56999999999999999999999999999973

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=2.5e-23  Score=198.23  Aligned_cols=166  Identities=18%  Similarity=0.146  Sum_probs=136.2

Q ss_pred             cCCccchhhhccCCCcC---------CCCcCCCchHHHHHHhhCcHHHHHHHHhc----CCchhhhhhhhccc-cCCCcc
Q psy875          313 KRAPRSHFLIKRNDKDS---------NLNLYNIESITISRNRLGAQEVRKLLSLL----NADLLVHLNLSATL-ETPTTS  378 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~----g~~~~~~~~~~~~~-~~~~~~  378 (480)
                      .|.||||+|+..+..++         +.....+.++++.|+..|+.++|++|++.    |++++......... ......
T Consensus        52 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (364)
T 3ljn_A           52 FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS  131 (364)
T ss_dssp             TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhcc
Confidence            47888888887765543         33445778999999999999999999999    77776522111000 001111


Q ss_pred             ccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-----CCCccCCC
Q psy875          379 LLEKPRGETALHVAAARG--NLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD-----PNDKVQDS  451 (480)
Q Consensus       379 ~~~~~~g~~~l~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~  451 (480)
                      ...+..|.||||+|+..|  +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++     ++  ..|.
T Consensus       132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~  209 (364)
T 3ljn_A          132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD--YANK  209 (364)
T ss_dssp             EEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT--CCCT
T ss_pred             ccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc--ccCC
Confidence            223456999999999999  99999999999999999999999999999999999999999999999     88  5699


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          452 AGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       452 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      .|.||||+|+..|+.+++++|+++|++++
T Consensus       210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~~  238 (364)
T 3ljn_A          210 QGNSHLHWAILINWEDVAMRFVEMGIDVN  238 (364)
T ss_dssp             TCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999985

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=1.2e-22  Score=186.46  Aligned_cols=150  Identities=24%  Similarity=0.180  Sum_probs=131.4

Q ss_pred             cCCccchhhhccCC-----------CcCCCC----------cCCCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhc
Q psy875          313 KRAPRSHFLIKRND-----------KDSNLN----------LYNIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSA  370 (480)
Q Consensus       313 ~~~~~~~~~~~~~~-----------~~~~~~----------~~~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~  370 (480)
                      .|.||+|+++..+.           .+++..          ...+.++++.|+..|+.+++++|++. |++++..+    
T Consensus       104 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----  179 (285)
T 1wdy_A          104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD----  179 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC----
T ss_pred             ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC----
Confidence            46677777665543           334433          55677899999999999999999987 88887653    


Q ss_pred             cccCCCccccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCC
Q psy875          371 TLETPTTSLLEKPRGETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPN  445 (480)
Q Consensus       371 ~~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~  445 (480)
                                  ..|.||||+|+..++    .+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++
T Consensus       180 ------------~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~  247 (285)
T 1wdy_A          180 ------------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  247 (285)
T ss_dssp             ------------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred             ------------CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence                        349999999999999    899999999999999999999999999999999999999999 899999


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          446 DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       446 ~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                        .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       248 --~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          248 --DTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             --CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             --ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence              569999999999999999999999999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=2.4e-23  Score=185.81  Aligned_cols=128  Identities=27%  Similarity=0.349  Sum_probs=91.5

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.++|+.|++.|+.++++.|+++|++++..                 +.|.||||.|+..|+.++++.|++.|+++|.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-----------------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   65 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-----------------PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL   65 (239)
T ss_dssp             ---------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-----------------chhhHHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            45789999999999999999999999999864                 2389999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|..|+||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus        66 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  130 (239)
T 1ycs_B           66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVN--AADSDGWTPLHCAASCNNVQVCKFLVESGAAVF  130 (239)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999  669999999999999999999999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=8.3e-24  Score=171.54  Aligned_cols=130  Identities=25%  Similarity=0.267  Sum_probs=115.5

Q ss_pred             CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875          331 LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP  410 (480)
Q Consensus       331 ~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~  410 (480)
                      ..+..+.++++.|+..|+.+++++|++.|++++..+                ..|.||||+|+..|+.+++++|+++|++
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   68 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD----------------HAGWTPLHEACNHGHLKVVELLLQHKAL   68 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence            456678899999999999999999999999987653                3499999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..+..+++.+|.+.+..
T Consensus        69 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999999999999999999999999999999999  6699999999999999999999888877654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=1.2e-22  Score=191.43  Aligned_cols=147  Identities=24%  Similarity=0.185  Sum_probs=125.6

Q ss_pred             hccCCccchhhhcc------------CCCcCCCCcCCCchHHHHHHhhC----cHHHHHHHHhcCCchhhhhhhhccccC
Q psy875          311 NRKRAPRSHFLIKR------------NDKDSNLNLYNIESITISRNRLG----AQEVRKLLSLLNADLLVHLNLSATLET  374 (480)
Q Consensus       311 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~----~~~~v~~L~~~g~~~~~~~~~~~~~~~  374 (480)
                      ...|.||||+|+..            .+.+++..+..+.++++.++..+    ...++++|+++|++++..+.       
T Consensus       165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-------  237 (337)
T 4g8k_A          165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-------  237 (337)
T ss_dssp             TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-------
T ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-------
Confidence            34578888887654            46677777777777777665433    35688999999999987643       


Q ss_pred             CCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCC
Q psy875          375 PTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAG  453 (480)
Q Consensus       375 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g  453 (480)
                               .|.||||+|+..|+.++++.|+.. |+++|.+|..|+||||+|+..|+.++|++|+++|++++  .     
T Consensus       238 ---------~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n--~-----  301 (337)
T 4g8k_A          238 ---------RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD--C-----  301 (337)
T ss_dssp             ---------GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST--T-----
T ss_pred             ---------CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--C-----
Confidence                     499999999999999999999986 89999999999999999999999999999999999988  2     


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          454 WLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       454 ~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      .||||+|+..|+.+++++|+++||+||
T Consensus       302 ~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          302 GDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            369999999999999999999999985

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.89  E-value=1.8e-23  Score=189.39  Aligned_cols=139  Identities=25%  Similarity=0.198  Sum_probs=119.4

Q ss_pred             CCCchHHHHHH---hhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875          334 YNIESITISRN---RLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP  410 (480)
Q Consensus       334 ~~~~~~~~~a~---~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~  410 (480)
                      ..+.++|+.|+   ..|+.++|++|++.|+++.......     .......+..|.||||+|+..|+.+++++|++.|++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  118 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI-----NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD  118 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH-----TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh-----cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            55889999999   7899999999999998865432211     011122233599999999999999999999999999


Q ss_pred             CCCCC--------------CCCChHHHHHHHcCCHHHHHHHHH---cCCCCCCccCCCCCCcHHHHHHHcCC--------
Q psy875          411 VKVQD--------------SAGWLPLHEAANHGHTDIVQALVS---AGADPNDKVQDSAGWLPLHEAANHGH--------  465 (480)
Q Consensus       411 ~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~g~tpl~~A~~~~~--------  465 (480)
                      ++.++              ..|+||||+|+..|+.+++++|++   +|++++  .+|..|+||||+|+..++        
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~--~~d~~g~TpLh~A~~~~~~~~~~~~~  196 (260)
T 3jxi_A          119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR--RQDSRGNTVLHALVAIADNTRENTKF  196 (260)
T ss_dssp             TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT--CCCTTSCCHHHHHHHHCCSSHHHHHH
T ss_pred             cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc--ccCCCCCcHHHHHHHhccCchhHHHH
Confidence            99998              689999999999999999999999   999999  669999999999998887        


Q ss_pred             -HHHHHHHHHcCCCC
Q psy875          466 -TDIVQALVSAGAEV  479 (480)
Q Consensus       466 -~~~~~~Ll~~ga~~  479 (480)
                       .+++++|+++|+++
T Consensus       197 ~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          197 VTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccc
Confidence             79999999999875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=1.5e-22  Score=193.18  Aligned_cols=157  Identities=24%  Similarity=0.192  Sum_probs=133.7

Q ss_pred             cCCccchhhhccCC--------------CcCCCCcCCCchHHHHHHhhC---cHHHHHHHHhcCCchhhhhhhhccccCC
Q psy875          313 KRAPRSHFLIKRND--------------KDSNLNLYNIESITISRNRLG---AQEVRKLLSLLNADLLVHLNLSATLETP  375 (480)
Q Consensus       313 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~a~~~~---~~~~v~~L~~~g~~~~~~~~~~~~~~~~  375 (480)
                      .|.||||+++..+.              .+++..+..+.+++++|+..+   +.+++++|+++|++++.....       
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~-------  270 (373)
T 2fo1_E          198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA-------  270 (373)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG-------
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc-------
Confidence            47788888876654              456667788889999999887   899999999999998763221       


Q ss_pred             CccccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC
Q psy875          376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW  454 (480)
Q Consensus       376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~  454 (480)
                       .....+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.
T Consensus       271 -~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~--~~d~~g~  347 (373)
T 2fo1_E          271 -RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE--AVDATDH  347 (373)
T ss_dssp             -GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCSSSC
T ss_pred             -ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--CCCCCCC
Confidence             11223556999999999999999999999885 9999999999999999999999999999999999999  5699999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          455 LPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       455 tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      ||||+|+..|+.+++++|+++|++.
T Consensus       348 t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          348 TARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999999999999999999999874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.88  E-value=8.1e-23  Score=187.40  Aligned_cols=153  Identities=20%  Similarity=0.167  Sum_probs=130.1

Q ss_pred             hhhccCCccchhhhccCCCcC---------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          309 RTNRKRAPRSHFLIKRNDKDS---------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      ..+..|.||||+|+..+..++         +.+..++.+++++|+..|+.++|++|+++|++++..+             
T Consensus        26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d-------------   92 (285)
T 3kea_A           26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFD-------------   92 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC-------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-------------
Confidence            445678999999887765432         2233357899999999999999999999999988653             


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAG-WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH  458 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~  458 (480)
                         ..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++..   ...|.||||
T Consensus        93 ---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~  166 (285)
T 3kea_A           93 ---DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---LAILLSCIH  166 (285)
T ss_dssp             ---TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC---CSTHHHHHH
T ss_pred             ---CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc---ccCCccHHH
Confidence               349999999999999999999999999999999988 7999999999999999999999987752   127999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Q psy875          459 EAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|+..|+.+++++|+++|++++
T Consensus       167 ~A~~~g~~~~v~~Ll~~gad~n  188 (285)
T 3kea_A          167 ITIKNGHVDMMILLLDYMTSTN  188 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHcChHHHHHHHHHcCCCCC
Confidence            9999999999999999998875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.88  E-value=3.1e-23  Score=185.58  Aligned_cols=148  Identities=25%  Similarity=0.269  Sum_probs=127.8

Q ss_pred             cCCccchhhhccCCC---------------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875          313 KRAPRSHFLIKRNDK---------------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT  377 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~  377 (480)
                      .|.||+|+++..+..               +++..+..+.++++.|+..|+.+++++|++.|++++....          
T Consensus        78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------  147 (241)
T 1k1a_A           78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI----------  147 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc----------
Confidence            467777777655432               5666778889999999999999999999999999886531          


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL  457 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl  457 (480)
                           ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||
T Consensus       148 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl  220 (241)
T 1k1a_A          148 -----KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--LKNCHNDTPL  220 (241)
T ss_dssp             -----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCTT
T ss_pred             -----cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CcCCCCCCHH
Confidence                 349999999999999999999999999999999999999999999999999999999999999  5699999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCC
Q psy875          458 HEAANHGHTDIVQALVSAGA  477 (480)
Q Consensus       458 ~~A~~~~~~~~~~~Ll~~ga  477 (480)
                      |+|+..|+.++++.|+++++
T Consensus       221 ~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          221 MVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             TTCSSHHHHHHHTC------
T ss_pred             HHHHhcCcHHHHhhhccCCC
Confidence            99999999999999999876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.88  E-value=7.3e-21  Score=182.19  Aligned_cols=218  Identities=15%  Similarity=0.107  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC-c
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD-D  112 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~-~  112 (480)
                      ....++.+|..+...|++++|+.+|++|+++.  .++.+..+.++..+|.+|+.. |++++|+.++++|+.+.+..++ .
T Consensus       100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~  178 (378)
T 3q15_A          100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYS  178 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCch
Confidence            34467889999999999999999999999985  344566788999999996555 9999999999999999988776 5


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFP  187 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~  187 (480)
                      ...+.++.++|.+|..+|++++|+.+|++++...+.    ...+.++.++|.+|..+|++++|+.++++++++... ..+
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  258 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD  258 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            678899999999999999999999999999876432    345788999999999999999999999999998664 445


Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q psy875          188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK---FTELEQIKTE  256 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~  256 (480)
                      ..+.++.++|.++..+|+ +++|..++++++++.++.+++.... .+..++.+|...++   +.+|+.++++
T Consensus       259 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQ-TQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            558999999999999999 9999999999999988777765544 46788999999999   6666666654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.2e-22  Score=150.99  Aligned_cols=92  Identities=47%  Similarity=0.735  Sum_probs=88.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                      |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcC
Confidence            8999999999999999999999999999999999999999999999999999999999999  56999999999999999


Q ss_pred             CHHHHHHHHHcCCC
Q psy875          465 HTDIVQALVSAGAE  478 (480)
Q Consensus       465 ~~~~~~~Ll~~ga~  478 (480)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999986

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.5e-23  Score=178.63  Aligned_cols=125  Identities=14%  Similarity=0.072  Sum_probs=111.7

Q ss_pred             CCCchHHHHHHhhCcH----HHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC------HHHHHH
Q psy875          334 YNIESITISRNRLGAQ----EVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN------LTLVQS  403 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~----~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~------~~~~~~  403 (480)
                      ..+.+|||+|+..|+.    +++++|+++|+|++..+                ..|.||||+|+..++      .+++++
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d----------------~~g~TpLh~a~~~~~~~~~~~~~iv~~   99 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT----------------KEGTTLFFPLFQGGGNDITGTTELCKI   99 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC----------------TTCCCTHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC----------------CCCCcHHHHHHHcCCcchhhHHHHHHH
Confidence            5678899999988875    59999999999999764                359999999999886      578999


Q ss_pred             HHhcCCCCCCCCCCCC-hHHHHHHHcCC-----HHHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy875          404 LLKQGHPVKVQDSAGW-LPLHEAANHGH-----TDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG  476 (480)
Q Consensus       404 ll~~g~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  476 (480)
                      |+++|+++|.+|..|+ ||||+|+..+.     .+++++|++ +|++++  ..|..|.||||+|+..|+.+++++|.+..
T Consensus       100 Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999 99999999553     569999999 999999  66999999999999999999999998753

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=3.1e-22  Score=195.60  Aligned_cols=149  Identities=28%  Similarity=0.344  Sum_probs=76.8

Q ss_pred             cCCccchhhhccCC-----------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRND-----------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||||+|+..|.           .+++..+..+.++++.|+..|+.++|++|+++|++++..+.              
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------   78 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK--------------   78 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT--------------
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC--------------
Confidence            45566666554432           34455555566666666666666666666666666654322              


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                        .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++++  ..+..|.||||+|+
T Consensus        79 --~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~  154 (437)
T 1n11_A           79 --DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLHVAA  154 (437)
T ss_dssp             --TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHH
T ss_pred             --CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHHHHH
Confidence              24455555555555555555555555555444445555555555555544444444444444  22444444444444


Q ss_pred             HcCCHHHHHHHHHcCCCC
Q psy875          462 NHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       462 ~~~~~~~~~~Ll~~ga~~  479 (480)
                      ..|+.+++++|+++|+++
T Consensus       155 ~~g~~~~v~~Ll~~g~~~  172 (437)
T 1n11_A          155 KYGKVRVAELLLERDAHP  172 (437)
T ss_dssp             HTTCHHHHHHHHHTTCCT
T ss_pred             HcCCHHHHHHHHhCCCCC
Confidence            444444444444444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.9e-20  Score=168.70  Aligned_cols=214  Identities=14%  Similarity=0.176  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-Cch
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK-DDK  113 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~-~~~  113 (480)
                      ..+.+++.+|.++...|++++|+.+|+++++. .    ....++..+|.+|... |++++|+.++++++.+.+... +.+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~----~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~   76 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H----KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYK   76 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S----CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h----ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchH
Confidence            45789999999999999999999999999999 3    3456788999995554 999999999999999887654 445


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc------------------------cccHHHHHHHHHHHHHhhccHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL------------------------CKDLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~------------------------~~~~~~~~~~la~~y~~~~~~~  169 (480)
                      ....++..+|.+|...|++++|+.+|++++...+                        .+....++..+|.++...|+++
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence            5578999999999999999999999999987432                        2455778999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875          170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE  249 (480)
Q Consensus       170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  249 (480)
                      +|+.+|+++++..    +....++..+|.++...|+ +++|+.+++++++.      .+....++..+|.++..+|++++
T Consensus       157 ~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~  225 (258)
T 3uq3_A          157 NAVKAYTEMIKRA----PEDARGYSNRAAALAKLMS-FPEAIADCNKAIEK------DPNFVRAYIRKATAQIAVKEYAS  225 (258)
T ss_dssp             HHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhcC----cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999984    3346789999999999999 99999999999887      23346788899999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy875          250 LEQIKTELKSLEEKLD  265 (480)
Q Consensus       250 A~~~~~~~~~l~~~~~  265 (480)
                      |..+++++.++..+..
T Consensus       226 A~~~~~~a~~~~~~~~  241 (258)
T 3uq3_A          226 ALETLDAARTKDAEVN  241 (258)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChhhc
Confidence            9999999999887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.88  E-value=7.7e-22  Score=176.01  Aligned_cols=151  Identities=28%  Similarity=0.394  Sum_probs=107.1

Q ss_pred             cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc-----------------ccCCCccccCCCCCchHHH
Q psy875          328 DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT-----------------LETPTTSLLEKPRGETALH  390 (480)
Q Consensus       328 ~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~l~  390 (480)
                      +++..+.++.++++.|+..|+.+++++|+++|++++..+..+.+                 +..+......+..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            55677788899999999999999999999999998875432111                 1233333444556677777


Q ss_pred             HHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q psy875          391 VAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIV  469 (480)
Q Consensus       391 ~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~  469 (480)
                      +|+..|+.+++++|++.| .+++..+..|+||||+|+..|+.+++++|+++|++++  ..+..|.||||+|+..|+.+++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHHHHHHCCCHHHH
Confidence            777777777777777766 6666666677777777777777777777777777776  4466677777777777777777


Q ss_pred             HHHHHcCCCCC
Q psy875          470 QALVSAGAEVS  480 (480)
Q Consensus       470 ~~Ll~~ga~~~  480 (480)
                      ++|+++|++++
T Consensus       161 ~~Ll~~g~~~~  171 (237)
T 3b7b_A          161 EILLAAKCDLH  171 (237)
T ss_dssp             HHHHTTTCCTT
T ss_pred             HHHHHcCCCCC
Confidence            77777777653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.88  E-value=4.7e-22  Score=188.34  Aligned_cols=150  Identities=23%  Similarity=0.230  Sum_probs=132.6

Q ss_pred             cCCccchhhhccC-----------CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          313 KRAPRSHFLIKRN-----------DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       313 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      .|.||||+|+..+           +.+++..+..+.++++.|+..|+.+++++|+++|++++..+               
T Consensus        57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~---------------  121 (351)
T 3utm_A           57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD---------------  121 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC---------------
Confidence            4777777776554           45677788899999999999999999999999999988653               


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC----------------------------------------------
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD----------------------------------------------  415 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~----------------------------------------------  415 (480)
                       ..|.||||+|+..|+.+++++|+++|++++..+                                              
T Consensus       122 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  200 (351)
T 3utm_A          122 -LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL  200 (351)
T ss_dssp             -TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHh
Confidence             349999999999999999999999999987654                                              


Q ss_pred             --------CCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          416 --------SAGWLPLHEAANH---GHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       416 --------~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                              ..|.||||+|+..   +..+++++|++.|++++  .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       201 ~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n  274 (351)
T 3utm_A          201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN  274 (351)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                    4567999999999   45899999999999999  569999999999999999999999999999985

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.88  E-value=2.9e-22  Score=183.73  Aligned_cols=153  Identities=25%  Similarity=0.307  Sum_probs=136.6

Q ss_pred             hhccCCccchhhhccCCC-----------c---CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCC
Q psy875          310 TNRKRAPRSHFLIKRNDK-----------D---SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETP  375 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~  375 (480)
                      .+..|.||||+|+..+..           +   ++..+..+.++|++|+..|+.++|++|+++|++++..+         
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~---------   75 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE---------   75 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC---------
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------
Confidence            345799999999887654           2   56677889999999999999999999999999998654         


Q ss_pred             CccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC---------------------------------------------
Q psy875          376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP---------------------------------------------  410 (480)
Q Consensus       376 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~---------------------------------------------  410 (480)
                             ..|.||||+|+..|+.+++++|++.|++                                             
T Consensus        76 -------~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (282)
T 1oy3_D           76 -------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR  148 (282)
T ss_dssp             -------TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG
T ss_pred             -------CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhh
Confidence                   3499999999999999999999998765                                             


Q ss_pred             --CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          411 --VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       411 --~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                        ++.++..|+||||+|+..|+.+++++|+++|++++  ..+. .|.||||+|+..|+.+++++|+++|++++
T Consensus       149 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~  219 (282)
T 1oy3_D          149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (282)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence              67788899999999999999999999999999999  4464 59999999999999999999999999985

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.88  E-value=8.3e-23  Score=191.18  Aligned_cols=142  Identities=23%  Similarity=0.117  Sum_probs=125.0

Q ss_pred             hhccCCCcCCC-CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC--
Q psy875          321 LIKRNDKDSNL-NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN--  397 (480)
Q Consensus       321 ~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~--  397 (480)
                      .+...+.++|. .+..+.++||+|+..|+.++|++|+++|++++..+                ..|.||||+|+..|+  
T Consensus       115 ~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d----------------~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          115 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD----------------NMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC----------------TTCCCHHHHHHHSSHHH
T ss_pred             HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHhcccc
Confidence            34456788888 78999999999999999999999999999998754                359999999999988  


Q ss_pred             -HHHHHHHHhcC-CCCCCCCCCCChHHHHHHH----cCCHHHHHHHHHcCC-----------------------------
Q psy875          398 -LTLVQSLLKQG-HPVKVQDSAGWLPLHEAAN----HGHTDIVQALVSAGA-----------------------------  442 (480)
Q Consensus       398 -~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~g~-----------------------------  442 (480)
                       .++++.|++.+ ++++.+|..|+||||+|+.    .|+.+++++|++.+.                             
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             67788888886 6799999999999999999    899999999988742                             


Q ss_pred             ----------------CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          443 ----------------DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       443 ----------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                                      +++  .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       259 ~t~L~~a~~~~~Ll~~~~n--~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~  310 (327)
T 1sw6_A          259 KDSILENLDLKWIIANMLN--AQDSNGDTCLNIAARLGNISIVDALLDYGADPF  310 (327)
T ss_dssp             -CHHHHHCSHHHHHHHTTT--CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred             CChhHHHHHHHHHHHhCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence                            466  568899999999999999999999999999985

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1.4e-22  Score=160.98  Aligned_cols=112  Identities=26%  Similarity=0.316  Sum_probs=102.3

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.++++.|+..|+.+++++|++.|++++..+                ..|.||||+|+..|+.+++++|++.|++++.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   68 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL----------------EGGRKPLHYAADCGQLEILEFLLLKGADINA   68 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC----------------TTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccC----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            356689999999999999999999999987654                3499999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH  463 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~  463 (480)
                      +|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|...
T Consensus        69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT--VKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHhCCH
Confidence            99999999999999999999999999999999  5699999999999543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=2.2e-21  Score=170.47  Aligned_cols=198  Identities=13%  Similarity=0.074  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +.+++.+|.++...|++++|+..|+++++.    .|....++..+|.+| ...|++++|+.++++++++.+..      .
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~------~   73 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQ-LKLGLVNPALENGKTLVARTPRY------L   73 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc------H
Confidence            457899999999999999999999999998    777788899999995 45599999999999999985432      5


Q ss_pred             HHHHHHHHHHHhc-----------CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875          117 TVMRSIKKLYKKH-----------DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN  185 (480)
Q Consensus       117 ~~~~~l~~~y~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~  185 (480)
                      .++.++|.++..+           |++++|+..|++++...|  ....++.++|.+|..+|++++|+..|++++++.   
T Consensus        74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---  148 (217)
T 2pl2_A           74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALE---  148 (217)
T ss_dssp             HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---
Confidence            6788999999999           999999999999997765  445789999999999999999999999999994   


Q ss_pred             cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          186 FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                        ..+.++.++|.++..+|+ +++|+..|++++++      .|....++..++.++..+|++++|...++++..
T Consensus       149 --~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          149 --DTPEIRSALAELYLSMGR-LDEALAQYAKALEQ------APKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             --CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------STTCHHHHHHHHHHHTC----------------
T ss_pred             --cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence              346788999999999999 99999999999987      444557888999999999999999999987653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.88  E-value=2.9e-22  Score=188.69  Aligned_cols=151  Identities=24%  Similarity=0.170  Sum_probs=127.8

Q ss_pred             ccCCccchhhhccCCC-----------cCC----------CCcCCCchHHHHHHhhCcHHHHHHHHh-cCCchhhhhhhh
Q psy875          312 RKRAPRSHFLIKRNDK-----------DSN----------LNLYNIESITISRNRLGAQEVRKLLSL-LNADLLVHLNLS  369 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~a~~~~~~~~v~~L~~-~g~~~~~~~~~~  369 (480)
                      ..|.||+|+++..+..           +++          .....+.++|+.|+..|+.++|++|++ .|++++..+.  
T Consensus       123 ~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~--  200 (337)
T 4g8k_A          123 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN--  200 (337)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT--
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC--
Confidence            3477777777655432           333          223457789999999999999999996 5999987543  


Q ss_pred             ccccCCCccccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCC
Q psy875          370 ATLETPTTSLLEKPRGETALHVAAARGN----LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADP  444 (480)
Q Consensus       370 ~~~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~  444 (480)
                                    .|.||+|.++..+.    ..++++|+++|+++|.+|..|+||||+|+..|+.++++.|+.. |+++
T Consensus       201 --------------~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v  266 (337)
T 4g8k_A          201 --------------MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI  266 (337)
T ss_dssp             --------------TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT
T ss_pred             --------------CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc
Confidence                          49999998887654    4688999999999999999999999999999999999999985 8999


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       445 ~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +  .+|..|+||||+|+..|+.+++++|+++||++|
T Consensus       267 n--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          267 N--DTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             T--CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             c--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9  669999999999999999999999999999985

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=2.9e-22  Score=182.75  Aligned_cols=134  Identities=25%  Similarity=0.289  Sum_probs=124.3

Q ss_pred             CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCC-chhhhhhhhccccCCCccccCCCCCchHHHHHH-----HcCCHHHHH
Q psy875          329 SNLNLYNIESITISRNRLGAQEVRKLLSLLNA-DLLVHLNLSATLETPTTSLLEKPRGETALHVAA-----ARGNLTLVQ  402 (480)
Q Consensus       329 ~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~-----~~~~~~~~~  402 (480)
                      +|..+..+.+++++|+..|+.++|++|++.|+ +++..+                ..|.||||+|+     ..++.++++
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------~~g~tpL~~a~~~~~~~~~~~~~v~  167 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN----------------RAGYSPIMLTALATLKTQDDIETVL  167 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC----------------TTSCCHHHHGGGCCCCSHHHHHHHH
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC----------------CCCCCHHHHHHHHHhhhhhhHHHHH
Confidence            67778889999999999999999999999998 777653                35999999999     567899999


Q ss_pred             HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Q psy875          403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAEVS  480 (480)
Q Consensus       403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~  480 (480)
                      .|++.|.+++..+..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|++ .|++++
T Consensus       168 ~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~  244 (276)
T 4hbd_A          168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS  244 (276)
T ss_dssp             HHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT
T ss_pred             HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999999999999999999999999  669999999999999999999999999 899875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.87  E-value=6.1e-22  Score=164.41  Aligned_cols=124  Identities=33%  Similarity=0.424  Sum_probs=113.6

Q ss_pred             chHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875          337 ESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD  415 (480)
Q Consensus       337 ~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~  415 (480)
                      .++++.|+..|+.++++.|++. +.+++..                +..|.||||+ +..|+.+++++|++.|++++.+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~   65 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDAL----------------NRFGKTALQV-MMFGSTAIALELLKQGASPNVQD   65 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCC----------------CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCcccc----------------CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC
Confidence            5789999999999999999998 3366554                3459999999 99999999999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++ ++++
T Consensus        66 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~  127 (156)
T 1bd8_A           66 TSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH  127 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC
Confidence            999999999999999999999999999999  5699999999999999999999999998 7764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=5.9e-22  Score=176.98  Aligned_cols=132  Identities=23%  Similarity=0.173  Sum_probs=89.2

Q ss_pred             CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCC-HHHHHHHHhcC
Q psy875          330 NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGN-LTLVQSLLKQG  408 (480)
Q Consensus       330 ~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~-~~~~~~ll~~g  408 (480)
                      +..+..+.++++.|+..|+.+++++|+++|++++..                +..|.||||+|+..++ .+++++|++.|
T Consensus       103 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------------~~~g~t~l~~a~~~~~~~~~~~~L~~~~  166 (240)
T 3eu9_A          103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM----------------DQNGMTPLMWAAYRTHSVDPTRLLLTFN  166 (240)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------CTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred             cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc----------------CCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence            334444455555555555555555555555554432                3347777777776554 67777777777


Q ss_pred             CCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          409 HPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       409 ~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      ++++..+. .|.||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++++|+++|++.
T Consensus       167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD--AQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            77777775 77788888888888888888888888877  45777888888888888888888888777653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.87  E-value=1.2e-20  Score=172.25  Aligned_cols=212  Identities=18%  Similarity=0.248  Sum_probs=184.1

Q ss_pred             HhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC--CCchHHHHHHH
Q psy875           47 YKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN--KDDKLIRTVMR  120 (480)
Q Consensus        47 ~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~--~~~~~~~~~~~  120 (480)
                      ....|++++|+.+|++|++++    ..+.+....++..+|.+|... |++++|+.++++++.+....  ++.+....++.
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   89 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLN   89 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            456799999999999999986    235577889999999996555 99999999999999988665  66778889999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSD------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAV  190 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~  190 (480)
                      ++|.+|...|++++|+.+|++++...      ..+....++.++|.+|..+|++++|+.++++++++...    +.+...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999998763      23566889999999999999999999999999998443    467788


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC-------------------------------------------Cc
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK-------------------------------------------DD  227 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------------------~~  227 (480)
                      .++.++|.++..+|+ +++|+.++++++++.....                                           ..
T Consensus       170 ~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (283)
T 3edt_B          170 KTKNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS  248 (283)
T ss_dssp             HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999 9999999999999865421                                           45


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          228 KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       228 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +....++..+|.+|..+|++++|..+++++.++
T Consensus       249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            778889999999999999999999999998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=3e-21  Score=177.16  Aligned_cols=141  Identities=24%  Similarity=0.337  Sum_probs=107.5

Q ss_pred             cCCCcCCCC-cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHH
Q psy875          324 RNDKDSNLN-LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQ  402 (480)
Q Consensus       324 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~  402 (480)
                      ..+.+++.. ...+.++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+..|+.++++
T Consensus        26 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~   89 (285)
T 1wdy_A           26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK----------------KNGATPFLLAAIAGSVKLLK   89 (285)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHHTCHHHHH
T ss_pred             HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHH
Confidence            334455544 5667788888888888888888888888876543                34788888888888888888


Q ss_pred             HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccC--------CCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQ--------DSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++....        +..|.||||+|+..|+.+++++|++
T Consensus        90 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  169 (285)
T 1wdy_A           90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888888888888888888888888888888773210        5667888888888888888888887


Q ss_pred             c-CCCCC
Q psy875          475 A-GAEVS  480 (480)
Q Consensus       475 ~-ga~~~  480 (480)
                      . |++++
T Consensus       170 ~~~~~~~  176 (285)
T 1wdy_A          170 EMGADVN  176 (285)
T ss_dssp             TSCCCTT
T ss_pred             hcCCCCC
Confidence            6 77664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.8e-22  Score=178.20  Aligned_cols=129  Identities=22%  Similarity=0.189  Sum_probs=112.2

Q ss_pred             cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCC
Q psy875          333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GHPV  411 (480)
Q Consensus       333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~~~  411 (480)
                      +..+.++|+.|+..|+.++|++|++.|++++..+                ..|.||||+|+..|+.+++++|++. |+++
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~  133 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD----------------KAGSTALYWACHGGHKDIVEMLFTQPNIEL  133 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHTTSTTCCC
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccC----------------CCCCCHHHHHHHcCCHHHHHHHHcCCCCCc
Confidence            3456789999999999999999999999988653                3499999999999999999999999 9999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..++.++++.|+..|++.
T Consensus       134 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            9999999999999999999999999999999999  66999999999999999999999999999865

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.87  E-value=6.6e-21  Score=181.46  Aligned_cols=216  Identities=15%  Similarity=0.081  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      +....+++.+|.+|...|++++|+.+|++++++    .+....++..+|.+|.. .|++++|+.++++++.+.+......
T Consensus        96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~  170 (365)
T 4eqf_A           96 PGDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNNLKALMALAVSYTN-TSHQQDACEALKNWIKQNPKYKYLV  170 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhCccchHHH
Confidence            345778999999999999999999999999999    56667889999999555 4999999999999998865443321


Q ss_pred             ----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          114 ----LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       114 ----~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                          ....++..+|.++...|++++|+.+|++++...+......++.++|.+|...|++++|+.+|++++++.    +..
T Consensus       171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~  246 (365)
T 4eqf_A          171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----PED  246 (365)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTC
T ss_pred             hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCC
Confidence                124556678999999999999999999999887653356789999999999999999999999999983    444


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                      ..++.++|.++...|+ +++|+.+|++++++      .+....++..+|.+|..+|++++|..+++++.++.....
T Consensus       247 ~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  315 (365)
T 4eqf_A          247 YSLWNRLGATLANGDR-SEEAVEAYTRALEI------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR  315 (365)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence            6789999999999999 99999999999987      333467889999999999999999999999999876543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.86  E-value=2.3e-20  Score=171.84  Aligned_cols=223  Identities=15%  Similarity=0.065  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      .+......|...|.+|...|+|++|+++|.+++++.  .++....+.++.++|.+| ...|++++|+.+|++|+.+.+..
T Consensus        32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~~~~  110 (292)
T 1qqe_A           32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF-KSGGNSVNAVDSLENAIQIFTHR  110 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHc
Confidence            467777888999999999999999999999999996  344455688999999995 55599999999999999999988


Q ss_pred             CCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccc----cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          110 KDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCK----DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       110 ~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~----~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      ++....+.++.++|.+|... |++++|+.+|++++...+..    ....++.++|.+|..+|+|++|+.+|++++++...
T Consensus       111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  190 (292)
T 1qqe_A          111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            88888889999999999996 99999999999999876542    23578999999999999999999999999998665


Q ss_pred             Cc---HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HcCChHHHHHHHHHH
Q psy875          185 NF---PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK--KHDKFTELEQIKTEL  257 (480)
Q Consensus       185 ~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~  257 (480)
                      ..   .....++.++|.++..+|+ +++|+.+|++++.+........ ....+..++..+.  ..+++++|+..++++
T Consensus       191 ~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~-~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          191 NRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             CTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             CCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            32   2445688999999999999 9999999999998755443322 2345566677665  456788888777544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.86  E-value=1.9e-21  Score=179.89  Aligned_cols=132  Identities=30%  Similarity=0.420  Sum_probs=118.1

Q ss_pred             cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy875          333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK  412 (480)
Q Consensus       333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~  412 (480)
                      ...+.++++.|+..|+.++|++|+++|++++..+                ..|.||||+|+..|+.+++++|+++|++++
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  100 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYAN----------------VDGLTALHQACIDDNVDMVKFLVENGANIN  100 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC----------------TTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            3456789999999999999999999999988653                359999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcc--------------------------------------------
Q psy875          413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV--------------------------------------------  448 (480)
Q Consensus       413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------------------------------------  448 (480)
                      .+|..|+||||+|+..|+.+++++|+++|++++..-                                            
T Consensus       101 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  180 (299)
T 1s70_B          101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD  180 (299)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHH
Confidence            999999999999999999999999999999987320                                            


Q ss_pred             --------------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          449 --------------QDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       449 --------------~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                                    .+..|.||||+|+..|+.+++++|+++|++++
T Consensus       181 ~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~  226 (299)
T 1s70_B          181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (299)
T ss_dssp             HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence                          12357788999999999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=5.4e-22  Score=177.47  Aligned_cols=125  Identities=26%  Similarity=0.271  Sum_probs=113.3

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.++++.|+..|+.++|++|++ |++++..+                ..|.||||+|+..|+.+++++|+++|++++.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d----------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  105 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVD----------------ENGRTALLFVAGLGSDKCVRLLAEAGADLDH  105 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC----------------TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC----------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc
Confidence            356789999999999999999999 99988654                3599999999999999999999999999999


Q ss_pred             CC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH----------------HcCCHHHHHHHHHcC
Q psy875          414 QD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA----------------NHGHTDIVQALVSAG  476 (480)
Q Consensus       414 ~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~----------------~~~~~~~~~~Ll~~g  476 (480)
                      ++ ..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+                ..|+.+++++|++++
T Consensus       106 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            98 789999999999999999999999999999  56999999999887                668899999998864


Q ss_pred             C
Q psy875          477 A  477 (480)
Q Consensus       477 a  477 (480)
                      .
T Consensus       184 ~  184 (244)
T 3ui2_A          184 F  184 (244)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=3.9e-21  Score=174.88  Aligned_cols=133  Identities=18%  Similarity=0.112  Sum_probs=119.5

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR---GNLTLVQSLLKQGHPV  411 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~  411 (480)
                      .....++.|+..|+.+.++.+++.|++++....          ....+..|.||||+|+..   |+.+++++|+++|+++
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~----------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i  198 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIP----------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL  198 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCC----------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhcc----------ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc
Confidence            345688999999999999999999999765421          122345699999999999   8999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      |.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE--IANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999  66999999999999999999999999999864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=3.3e-21  Score=164.47  Aligned_cols=123  Identities=27%  Similarity=0.292  Sum_probs=109.5

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~  413 (480)
                      ..+.++++.|+..|+.++++.|++ |++++..+                ..|.||||+|+..|+.+++++|+++|++++.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  104 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVD----------------ENGRTALLFVAGLGSDKCVRLLAEAGADLDH  104 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            355788999999999999999999 99888653                3599999999999999999999999999999


Q ss_pred             CC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc----------------CCHHHHHHHHHc
Q psy875          414 QD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH----------------GHTDIVQALVSA  475 (480)
Q Consensus       414 ~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~----------------~~~~~~~~Ll~~  475 (480)
                      ++ ..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..                |+.+++++|.++
T Consensus       105 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            98 889999999999999999999999999999  6699999999999876                456677776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.85  E-value=2.4e-19  Score=166.34  Aligned_cols=207  Identities=9%  Similarity=0.089  Sum_probs=175.2

Q ss_pred             ccccHHHHHHHHHHHHHHhh-------ccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875           49 DNKQYNLAVDYFNKELRLHA-------RNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS  121 (480)
Q Consensus        49 ~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~  121 (480)
                      ..|++++|.++++++.+...       ++.......+...|.+|. ..|++++|+.+|.+|+.+....++....+.++.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~   81 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFK-NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ   81 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            46888999999999888641       122233456666788844 4499999999999999999988888888999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHH
Q psy875          122 IKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGE  195 (480)
Q Consensus       122 l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~  195 (480)
                      +|.+|..+|++++|+.+|++++.....    ...+.++.++|.+|.. |++++|+.+|++++++.+.  +......++.+
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            999999999999999999999876543    2346789999999999 9999999999999998665  34456789999


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      +|.+|..+|+ |++|+.+|++++.+....+........+..++.++..+|++++|..+++++.
T Consensus       161 lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          161 ASRLLVRQQK-FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            9999999999 9999999999999998887777777788999999999999999999998876

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=167.74  Aligned_cols=152  Identities=26%  Similarity=0.262  Sum_probs=125.5

Q ss_pred             hccCCccchhhhccCCCcC-----------C-CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875          311 NRKRAPRSHFLIKRNDKDS-----------N-LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS  378 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~  378 (480)
                      +..|.||+|+++..+..++           + .....+.++++.|+..|+.+++++|++.|++++..+            
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------  106 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID------------  106 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccC------------
Confidence            3457788888776655432           2 233346788888888888888888888888876543            


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCC-HHHHHHHHHcCCCCCCccCCC-CCCcH
Q psy875          379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH-TDIVQALVSAGADPNDKVQDS-AGWLP  456 (480)
Q Consensus       379 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~-~g~tp  456 (480)
                          ..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++ .+++++|++.|++++.  .+. .|.||
T Consensus       107 ----~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~--~~~~~g~t~  180 (240)
T 3eu9_A          107 ----GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL--GDKYHKNTA  180 (240)
T ss_dssp             ----TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTC--CCTTTCCCH
T ss_pred             ----CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcch--hhccCCCcH
Confidence                348999999999999999999999999999999999999999997666 7899999999999994  465 89999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          457 LHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       457 l~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ||+|+..|+.+++++|+++|++++
T Consensus       181 L~~A~~~~~~~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          181 LHWAVLAGNTTVISLLLEAGANVD  204 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=6.9e-21  Score=179.09  Aligned_cols=130  Identities=28%  Similarity=0.250  Sum_probs=118.1

Q ss_pred             CcCCCchHHHHHHhh-CcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875          332 NLYNIESITISRNRL-GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP  410 (480)
Q Consensus       332 ~~~~~~~~~~~a~~~-~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~  410 (480)
                      ....+.++|+.|+.. |+.++++.|+++|++++..+.              +..|.||||+|+..|+.+++++|+++|++
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~--------------~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad  260 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG--------------GQDNATPLIQATAANSLLACEFLLQNGAN  260 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCT--------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcccc--------------ccCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            344567899999999 999999999999999987541              13499999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875          411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA  477 (480)
Q Consensus       411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  477 (480)
                      +|.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++++|+..|.
T Consensus       261 vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLG--ARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999  669999999999999999999999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=2.4e-21  Score=164.96  Aligned_cols=124  Identities=15%  Similarity=0.072  Sum_probs=108.7

Q ss_pred             hHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCH----HHHHHHHhcCCCCCC
Q psy875          338 SITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNL----TLVQSLLKQGHPVKV  413 (480)
Q Consensus       338 ~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~----~~~~~ll~~g~~~~~  413 (480)
                      +.++.|++.|+.+.++.++..|.+.....                 .|.||||+|+..++.    +++++|+++|+++|.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~-----------------~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~   70 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDKESV-----------------LKSNILYDVLRNNNDEARYKISMFLINKGADIKS   70 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCHHHH-----------------HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccc-----------------CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence            56888999999999999998876543211                 299999999999975    599999999999999


Q ss_pred             CCCCCChHHHHHHHcCC------HHHHHHHHHcCCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCC
Q psy875          414 QDSAGWLPLHEAANHGH------TDIVQALVSAGADPNDKVQDSAGW-LPLHEAANHG-----HTDIVQALVS-AGAEVS  480 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~------~~~~~~Ll~~g~~~~~~~~~~~g~-tpl~~A~~~~-----~~~~~~~Ll~-~ga~~~  480 (480)
                      +|..|+||||+|+..++      .+++++|+++|+++|  .+|..|. ||||+|+..+     +.+++++|++ +|++++
T Consensus        71 ~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin--~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~  148 (186)
T 3t8k_A           71 RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT--ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL  148 (186)
T ss_dssp             CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS--SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred             CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC--ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence            99999999999999987      688999999999999  6699999 9999999854     4569999999 999985

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=1.4e-19  Score=172.31  Aligned_cols=218  Identities=15%  Similarity=0.105  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch-
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK-  113 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~-  113 (480)
                      ....+++.+|.++...|++++|+.+|++++++    .+....++..+|.+|.. .|++++|+.++++++...+...... 
T Consensus        96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~  170 (368)
T 1fch_A           96 KHMEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTN-ESLQRQACEILRDWLRYTPAYAHLVT  170 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            34678899999999999999999999999998    55566788889999544 4999999999998887654332211 


Q ss_pred             ------------------------------------------H--HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc
Q psy875          114 ------------------------------------------L--IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK  149 (480)
Q Consensus       114 ------------------------------------------~--~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~  149 (480)
                                                                .  ...++..+|.+|...|++++|+.+|++++...+  
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--  248 (368)
T 1fch_A          171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--  248 (368)
T ss_dssp             ---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred             HHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--
Confidence                                                      1  356788999999999999999999999997764  


Q ss_pred             cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc--
Q psy875          150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD--  227 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--  227 (480)
                      ....++.++|.+|...|++++|+.+|++++++    .+....++..+|.++...|+ +++|+.+|++++.+......+  
T Consensus       249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~  323 (368)
T 1fch_A          249 NDYLLWNKLGATLANGNQSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKSRGPRG  323 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC-----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCccc
Confidence            34578999999999999999999999999998    34456789999999999999 999999999999987655322  


Q ss_pred             ---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875          228 ---KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL  264 (480)
Q Consensus       228 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~  264 (480)
                         +....++..++.++..+|++++|...++++.+.....
T Consensus       324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  363 (368)
T 1fch_A          324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM  363 (368)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence               2236789999999999999999999999887665443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=7.6e-21  Score=174.98  Aligned_cols=131  Identities=20%  Similarity=0.091  Sum_probs=117.8

Q ss_pred             CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCC
Q psy875          336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR---GNLTLVQSLLKQGHPVK  412 (480)
Q Consensus       336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~~  412 (480)
                      ..++++.|+..|+.+.|+.|++.|++++.....          ...+..|.||||+|+..   ++.+++++|+++|+++|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~----------~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn  220 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPG----------PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD  220 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEEC----------SSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCC----------cccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC
Confidence            456799999999999999999999998763110          01244599999999997   89999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      .+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+.+++++|+++|++
T Consensus       221 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999  6699999999999999999999999998875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.84  E-value=2.3e-19  Score=153.14  Aligned_cols=168  Identities=18%  Similarity=0.239  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      +.+.+|+++|.+|..+|+|++|+++|++++++    .|....++..+|.+|.. .|++++|+..+.+++...+..     
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~-----   72 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTS-----   72 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCC-----
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchh-----
Confidence            34678999999999999999999999999999    67778889999999555 499999999999999875432     


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                       ..++..+|.++...+++++|...+.+++...+.  ...++..+|.+|..+|++++|+++|++++++    .|..+.++.
T Consensus        73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~  145 (184)
T 3vtx_A           73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTV--YADAYYKLGLVYDSMGEHDKAIEAYEKTISI----KPGFIRAYQ  145 (184)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhCCchhHHHHHHHHHHh----cchhhhHHH
Confidence             567789999999999999999999999877654  4578899999999999999999999999998    455578899


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ++|.+|..+|+ +++|+.+|++|+++
T Consensus       146 ~lg~~~~~~g~-~~~A~~~~~~al~~  170 (184)
T 3vtx_A          146 SIGLAYEGKGL-RDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHHHhC
Confidence            99999999999 99999999999987

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=2e-20  Score=151.42  Aligned_cols=98  Identities=45%  Similarity=0.706  Sum_probs=93.5

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN--TTGYQNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCGGGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc--CcCCCCCCHHHHH
Confidence            35569999999999999999999999999999999999999999999999999999999999999  5699999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCC
Q psy875          461 ANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       461 ~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +..|+.+++++|+++|++++
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~  103 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRN  103 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT
T ss_pred             HHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999975

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.83  E-value=6.9e-19  Score=158.12  Aligned_cols=207  Identities=15%  Similarity=0.143  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .+...+.+++.+|.++...|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.++++++...+.   
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~---  103 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSR---  103 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT---
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcC---
Confidence            34455889999999999999999999999999998    555677889999995554 9999999999999987543   


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                         ...++..+|.+|...|++++|+.+|++++.....+....++..+|.+|...|++++|+.+++++++..+    ....
T Consensus       104 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~  176 (252)
T 2ho1_A          104 ---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR----NQPS  176 (252)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHH
T ss_pred             ---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----ccHH
Confidence               256788999999999999999999999987223456678899999999999999999999999999843    3367


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ++..+|.++...|+ +++|..+++++++.      .+....++..++.++...|++++|..+++++.++
T Consensus       177 ~~~~la~~~~~~g~-~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          177 VALEMADLLYKERE-YVPARQYYDLFAQG------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHTT------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            78999999999999 99999999998764      2223456788999999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.83  E-value=1.8e-19  Score=163.82  Aligned_cols=210  Identities=13%  Similarity=0.105  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ..+++.+|.+|...|++++|+++++++++. ..+......++..+|.+|.. .|++++|+.+++++++..+..      .
T Consensus        37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~a~~~~~~~------~  108 (272)
T 3u4t_A           37 PYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMK-KGQDSLAIQQYQAAVDRDTTR------L  108 (272)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTC------T
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCccc------H
Confidence            458899999999999999999999999985 54444457788999999554 599999999999999975533      3


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH-HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA-QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la-~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      .++..+|.+|..+|++++|+.+|++++...  +....++.++| .+|.. +++++|+.+|++++++.+    ....++..
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p----~~~~~~~~  181 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKP----NIYIGYLW  181 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCc----cchHHHHH
Confidence            578899999999999999999999999775  44568899999 55554 599999999999999843    33678888


Q ss_pred             HHHHHHHhCCc--hHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKP--FELVVSTHEKALDLARQNKD--DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       196 l~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      +|.++...++.  +++|+.++++++++....++  ......++..+|.+|...|++++|..+++++.++.
T Consensus       182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999988752  56799999999998866555  34566899999999999999999999999998753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=3.1e-19  Score=171.37  Aligned_cols=209  Identities=18%  Similarity=0.254  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC--
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD--  111 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~--  111 (480)
                      +..+.+++.+|.++...|++++|+.+|++++++    .|....++..+|.+|. ..|++++|+..|++++...+....  
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~  138 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPDLYCVR  138 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTTCTHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            344566777777777777777777777777766    4444555566666633 336666666666666654322100  


Q ss_pred             --------------------------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875          112 --------------------------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN  165 (480)
Q Consensus       112 --------------------------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~  165 (480)
                                                .+....++.++|.+|...|++++|+.+|++++...+  ....++.++|.++...
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~  216 (388)
T 1w3b_A          139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEA  216 (388)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHc
Confidence                                      011123444555555555555555555555544332  2334455555555555


Q ss_pred             ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875          166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD  245 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  245 (480)
                      |++++|+..|++++++    .|....++.++|.++...|+ +++|+..|++++++      .+....++..++.++...|
T Consensus       217 ~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g  285 (388)
T 1w3b_A          217 RIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIEL------QPHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             TCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT------CSSCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhh----CcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcC
Confidence            5555555555555555    23334566677777777777 77777777776654      2223345667777777777


Q ss_pred             ChHHHHHHHHHHHHH
Q psy875          246 KFTELEQIKTELKSL  260 (480)
Q Consensus       246 ~~~~A~~~~~~~~~l  260 (480)
                      ++++|..+++++.++
T Consensus       286 ~~~~A~~~~~~al~~  300 (388)
T 1w3b_A          286 SVAEAEDCYNTALRL  300 (388)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            777777777777653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=6.5e-21  Score=149.25  Aligned_cols=99  Identities=39%  Similarity=0.591  Sum_probs=94.4

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                      +.|.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++  ..|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN--ARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT--CCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHHH
Confidence            456779999999999999999999999999999999999999999999999999999999999999  569999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC
Q psy875          460 AANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       460 A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      |+..|+.+++++|+++|+++|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCC
Confidence            999999999999999999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=4.2e-20  Score=146.47  Aligned_cols=95  Identities=32%  Similarity=0.434  Sum_probs=91.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q psy875          384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH  463 (480)
Q Consensus       384 ~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~  463 (480)
                      .|.||||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN--APDKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCCHHHHHHHc
Confidence            48999999999999999999999999999999999999999999999999999999999999  5699999999999999


Q ss_pred             CCHHHHHHHHHcCCCCC
Q psy875          464 GHTDIVQALVSAGAEVS  480 (480)
Q Consensus       464 ~~~~~~~~Ll~~ga~~~  480 (480)
                      |+.+++++|+++|++++
T Consensus        84 ~~~~~v~~Ll~~ga~~~  100 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKT  100 (123)
T ss_dssp             TCHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHcCCCCC
Confidence            99999999999999875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=2.5e-19  Score=172.06  Aligned_cols=197  Identities=19%  Similarity=0.269  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      ++..+|.++...|++++|+.+|++++++    .+....++..+|.+ +...|++++|+..+++++.+.+.      ...+
T Consensus       171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~------~~~~  239 (388)
T 1w3b_A          171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNV-LKEARIFDRAVAAYLRALSLSPN------HAVV  239 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHTTTCTTHHHHHHHHHHHHCTT------CHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCcC------CHHH
Confidence            3444444444444444444444444444    23333344444444 22224444444444444443221      1234


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +.++|.+|...|++++|+.+|++++...+  ....++.++|.+|...|++++|+.+|+++++..    |....++..+|.
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~  313 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLAN  313 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHH
Confidence            45555555555555555555555554432  223445555555555555555555555555552    222344555555


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ++...|+ +++|+..++++++.      .+....++..++.++.++|++++|...++++.+
T Consensus       314 ~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          314 IKREQGN-IEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHTTTC-HHHHHHHHHHHTTS------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHcCC-HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555 56665555555543      222344555666666666666666666666554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.3e-18  Score=159.52  Aligned_cols=188  Identities=21%  Similarity=0.324  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      ....+.++..+|.+|...|++++|+.++++++++.    ..+.+....++..+|.+| ...|++++|+.++++++.+...
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999999985    155677888999999995 5559999999999999998766


Q ss_pred             C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc------cccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS------DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      .  ++.+....++.++|.+|...|++++|+.+|++++..      ...+....++..+|.+|..+|++++|+.+++++++
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5  566778889999999999999999999999999876      22355678899999999999999999999999998


Q ss_pred             hhhc---------------------------------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875          181 LHAR---------------------------------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHE  215 (480)
Q Consensus       181 ~~~~---------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  215 (480)
                      +...                                             ..+..+.++..+|.+|..+|+ +++|+.+|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~  302 (311)
T 3nf1_A          224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK-FEAAETLEE  302 (311)
T ss_dssp             HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence            6432                                             357788899999999999999 999999999


Q ss_pred             HHHHHHH
Q psy875          216 KALDLAR  222 (480)
Q Consensus       216 ~al~~~~  222 (480)
                      +++++.+
T Consensus       303 ~al~l~~  309 (311)
T 3nf1_A          303 AAMRSRK  309 (311)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998753

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.82  E-value=1.5e-18  Score=160.99  Aligned_cols=216  Identities=14%  Similarity=0.087  Sum_probs=179.0

Q ss_pred             hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      ..+......|...|.+|...|++++|+.+|.+++++.  .++....+.++.++|.+| ...|++++|+.+|++|+.+...
T Consensus        30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~~~  108 (307)
T 2ifu_A           30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML-KDLQRMPEAVQYIEKASVMYVE  108 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCGGGGHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence            4466777888899999999999999999999999996  344456678999999995 5559999999999999999998


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc----cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          109 NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK----DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       109 ~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .++....+.++.++|.+|.. |++++|+.+|++++...+..    ..+.++.++|.+|..+|+|++|+.+|++++++...
T Consensus       109 ~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          109 NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            88888888999999999999 99999999999999776542    34678999999999999999999999999998665


Q ss_pred             C--cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875          185 N--FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ  252 (480)
Q Consensus       185 ~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  252 (480)
                      .  .+....++.++|.++..+|+ +++|+.+|++++ +....... .....+..++..+ ..|+.+.+..
T Consensus       188 ~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al-~~p~~~~~-~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          188 MENYPTCYKKCIAQVLVQLHRAD-YVAAQKCVRESY-SIPGFSGS-EDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHT-TSTTSTTS-HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHh-CCCCCCCC-HHHHHHHHHHHHH-HhcCHHHHHH
Confidence            3  34456688999999999999 999999999999 64433332 3445566677666 5677655544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=3.8e-18  Score=150.10  Aligned_cols=205  Identities=13%  Similarity=0.108  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ....+++.+|.++...|++++|+++++++++.    .+....++..+|.+|.. .|++++|+.++++++...+..     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~-----   75 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDS-----   75 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC-----
Confidence            45678999999999999999999999999998    55557788899999554 599999999999999875432     


Q ss_pred             HHHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                       ..++..+|.+|... |++++|+.++++++.....+....++..+|.+|...|++++|+.+++++++..    +....++
T Consensus        76 -~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~  150 (225)
T 2vq2_A           76 -AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ----PQFPPAF  150 (225)
T ss_dssp             -HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHH
T ss_pred             -hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCchHH
Confidence             45788999999999 99999999999999832345667889999999999999999999999999983    3346788


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ..+|.++...|+ +++|..++++++....  .   .....+..++.++...|++++|..+++.+.+.
T Consensus       151 ~~la~~~~~~~~-~~~A~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          151 KELARTKMLAGQ-LGDADYYFKKYQSRVE--V---LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHTC-HHHHHHHHHHHHHHHC--S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhCC--C---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            999999999999 9999999999988632  0   22344678889999999999999999887653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.82  E-value=6.8e-21  Score=157.95  Aligned_cols=130  Identities=22%  Similarity=0.174  Sum_probs=100.0

Q ss_pred             ccCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875          312 RKRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL  380 (480)
Q Consensus       312 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~  380 (480)
                      ..|.||||+++..           .+.+++..+..+.+++++|+ .|+.+++++|+++|++++..+.             
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~-------------   75 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP-------------   75 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-------------
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC-------------
Confidence            3467777766544           45567777888899999985 9999999999999999987643             


Q ss_pred             CCCCCch-HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q psy875          381 EKPRGET-ALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHE  459 (480)
Q Consensus       381 ~~~~g~~-~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~  459 (480)
                         .|.| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..+..|.||.+.
T Consensus        76 ---~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~~  150 (156)
T 1bi7_B           76 ---ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAEG  150 (156)
T ss_dssp             ---TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             ---CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCccccc
Confidence               4888 9999999999999999999999999999999999999999999999999999999999  568999999874


Q ss_pred             H
Q psy875          460 A  460 (480)
Q Consensus       460 A  460 (480)
                      +
T Consensus       151 ~  151 (156)
T 1bi7_B          151 P  151 (156)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=4.2e-19  Score=158.44  Aligned_cols=204  Identities=12%  Similarity=0.090  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      ....+..++.+|..+...|++++|+.+|+++++.    .+....++..+|.+|.. .|++++|+.++++++...+.    
T Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~----   89 (243)
T 2q7f_A           19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSS-VNELERALAFYDKALELDSS----   89 (243)
T ss_dssp             -----------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT----
T ss_pred             chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCc----
Confidence            3446778999999999999999999999999987    55567788999999555 49999999999999987542    


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                        ...++..+|.+|...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+.+++++++..+    ....+
T Consensus        90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~  161 (243)
T 2q7f_A           90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----NDTEA  161 (243)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----TCHHH
T ss_pred             --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----ccHHH
Confidence              2567889999999999999999999999977654  356789999999999999999999999999843    34568


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +..+|.++...|+ +++|+.++++++...      +....++..++.+|..+|++++|..+++++.++
T Consensus       162 ~~~l~~~~~~~~~-~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          162 RFQFGMCLANEGM-LDEALSQFAAVTEQD------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHTC-CHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            8999999999999 999999999998762      233567889999999999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=3.5e-20  Score=149.78  Aligned_cols=98  Identities=31%  Similarity=0.455  Sum_probs=93.0

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCC-CCcHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSA-GWLPLH  458 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-g~tpl~  458 (480)
                      ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++  .+|.. |.||||
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~   83 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN--CADPATLTRPVH   83 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS--CCBTTTTBCHHH
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC--CcCCCCCCCHHH
Confidence            445679999999999999999999999999999999999999999999 99999999999999999  56888 999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Q psy875          459 EAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|+..|+.+++++|+++|++++
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~  105 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHRAGARLD  105 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTCCCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999975

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.82  E-value=4.4e-20  Score=163.11  Aligned_cols=114  Identities=31%  Similarity=0.334  Sum_probs=96.8

Q ss_pred             HHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCH
Q psy875          352 RKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT  431 (480)
Q Consensus       352 v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~  431 (480)
                      |+.|++.|++++....             .+.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         1 v~~ll~~~~~~~~~~~-------------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~   67 (229)
T 2vge_A            1 MRSVLRKAGSPRKARR-------------ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY   67 (229)
T ss_dssp             ---------CCCCCCC-------------TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CeehhccCCCCccccc-------------cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4678888888875432             234588999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          432 DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       432 ~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +++++|+++|++++  .+|..|+||||+|+..|+.+++++|+++|++++
T Consensus        68 ~~v~~Ll~~ga~~n--~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~  114 (229)
T 2vge_A           68 SIVDFLITAGANVN--SPDSHGWTPLHCAASCNDTVICMALVQHGAAIF  114 (229)
T ss_dssp             HHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            99999999999999  569999999999999999999999999999975

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.81  E-value=5.1e-19  Score=180.91  Aligned_cols=172  Identities=14%  Similarity=0.208  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      +..+.++++||.+|..+|++++|+++|++|+++    .+....++.++|.+|. ..|++++|+.+|++|+++.+.     
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~-----   75 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPT-----   75 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-----
Confidence            456889999999999999999999999999999    7777889999999954 459999999999999998543     


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                       ...++.++|.+|..+|++++|+++|+++++..+  ..+.++.++|.+|..+|++++|+.+|++++++    .+....++
T Consensus        76 -~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----~P~~~~a~  148 (723)
T 4gyw_A           76 -FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKL----KPDFPDAY  148 (723)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHH
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHH
Confidence             367899999999999999999999999997764  55688999999999999999999999999999    45557889


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                      .++|.++..+|+ +++|.+.+++++++...
T Consensus       149 ~~L~~~l~~~g~-~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          149 CNLAHCLQIVCD-WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHTTC-CTTHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhccc-HHHHHHHHHHHHHhChh
Confidence            999999999999 99999999999987653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.81  E-value=8.3e-19  Score=166.55  Aligned_cols=202  Identities=8%  Similarity=0.024  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhhhcCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS-FEIVQSTHEKALDLARQNK  110 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~-~~~A~~~~~kAl~~~~~~~  110 (480)
                      ..+....++..+|.++...|++++|+..|++++++    .+....+|+++|.+|.. +|+ +++|+.+|++|+.+.+.. 
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~~a~~~~g~~l~~-~g~d~~eAl~~~~~al~l~P~~-  165 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKN-  165 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTC-
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHCCCC-
Confidence            34566889999999999999999999999999999    78888899999999544 486 999999999999986543 


Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV  190 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  190 (480)
                           ..++.++|.++..+|++++|+.+|++++...+  ....++.++|.++..+|++++|+.+|++++++    .+...
T Consensus       166 -----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l----~P~~~  234 (382)
T 2h6f_A          166 -----YQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----DVRNN  234 (382)
T ss_dssp             -----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCH
T ss_pred             -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCH
Confidence                 67899999999999999999999999997765  44588999999999999999999999999999    55667


Q ss_pred             HHHHHHHHHHHHhCCchHHH-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHH
Q psy875          191 KTLGEIGDLYELQEKPFELV-----VSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD--KFTELEQIKTE  256 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~  256 (480)
                      .+|+++|.++..++..+++|     +.+|++++.+      .+....++..++.++...|  ++++|+..+.+
T Consensus       235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l------~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~  301 (382)
T 2h6f_A          235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL------VPHNESAWNYLKGILQDRGLSKYPNLLNQLLD  301 (382)
T ss_dssp             HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence            89999999999944415888     5889999887      4445678889999999988  68888877654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.81  E-value=1.7e-18  Score=164.78  Aligned_cols=204  Identities=9%  Similarity=0.100  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +..++.+|..+...|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.+|++++.+.+..      .
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~  133 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQPNN------L  133 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------H
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC------H
Confidence            445899999999999999999999999999    566678899999995555 99999999999999885432      5


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccccc--------HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD--------LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE  188 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~--------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~  188 (480)
                      .++..+|.+|..+|++++|+.+|++++...+...        ....+..+|.+|...|++++|+.+|++++++.+...  
T Consensus       134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--  211 (365)
T 4eqf_A          134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI--  211 (365)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC--
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc--
Confidence            6789999999999999999999999997765421        234456679999999999999999999999844310  


Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          189 AVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .+.++..+|.++...|+ +++|+.+|++++++      .+....++..+|.+|..+|++++|..+++++.++
T Consensus       212 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  276 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGE-FNRAIDAFNAALTV------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI  276 (365)
T ss_dssp             CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            35688999999999999 99999999999987      2334568899999999999999999999999875

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=4.7e-18  Score=161.67  Aligned_cols=205  Identities=15%  Similarity=0.120  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +..++.+|.++...|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.++++++.+.+.      ..
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~------~~  132 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAEN-EQELLAISALRRCLELKPD------NQ  132 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT------CH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHhcCCC------CH
Confidence            456789999999999999999999999998    566677889999995554 9999999999999988543      25


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----------------------------------------------c
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----------------------------------------------K  149 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----------------------------------------------~  149 (480)
                      .++..+|.+|...|++++|+.+|++++...+.                                               +
T Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  212 (368)
T 1fch_A          133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  212 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc
Confidence            67889999999999999999999987755432                                               1


Q ss_pred             c--HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc
Q psy875          150 D--LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD  227 (480)
Q Consensus       150 ~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  227 (480)
                      .  ...++..+|.+|...|++++|+.+|++++++    .+....++..+|.++...|+ +++|+.+|++++.+      .
T Consensus       213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~------~  281 (368)
T 1fch_A          213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALEL------Q  281 (368)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------C
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------C
Confidence            1  4577889999999999999999999999998    34446789999999999999 99999999999887      3


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          228 KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       228 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      +....++..+|.+|..+|++++|..+++++.++...
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            344578889999999999999999999999887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.81  E-value=2.2e-18  Score=158.66  Aligned_cols=213  Identities=12%  Similarity=0.057  Sum_probs=161.2

Q ss_pred             HHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHH
Q psy875            6 ALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGD   83 (480)
Q Consensus         6 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~   83 (480)
                      |...|.. ..++......+.+....+.....+.++.++|.+|...|++++|+.+|++|+++.  .++....+.++.++|.
T Consensus        47 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3333333 333333333445545555566778999999999999999999999999999996  3344456788999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-----HHHHHHHH
Q psy875           84 LYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-----LASCYISL  158 (480)
Q Consensus        84 ~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~~l  158 (480)
                      +|...+|++++|+.+|++|+.+.+..++......++.++|.+|..+|+|++|+.+|++++...+...     ...++.++
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            9444249999999999999999987777667778899999999999999999999999998766532     24478999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhcCc-HHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHH
Q psy875          159 AQTYKDNKQYNLAVDYFNKELRLHARNF-PEAVKTLGEIGDLYE--LQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       159 a~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~--~~~~~~~~A~~~~~~al~~  220 (480)
                      |.+|..+|++++|+.+|++++++.+... ......+..++..+.  ..++ +++|+..|++++.+
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~-~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEFDNFMRL  269 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT-HHHHHHHHTTSSCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHhccCCcc
Confidence            9999999999999999999999855421 222345666777665  3566 88888887776543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.7e-19  Score=135.17  Aligned_cols=92  Identities=39%  Similarity=0.486  Sum_probs=85.7

Q ss_pred             CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875          336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD  415 (480)
Q Consensus       336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~  415 (480)
                      +.++++.|+..|+.+++++|++.|++++..+                ..|.||||+|+..|+.+++++|++.|++++.+|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d   65 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD   65 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            5688999999999999999999999998754                349999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          416 SAGWLPLHEAANHGHTDIVQALVSAGAD  443 (480)
Q Consensus       416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  443 (480)
                      ..|+||||+|+..|+.+++++|+++|++
T Consensus        66 ~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           66 KNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999975

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.81  E-value=1.3e-19  Score=146.38  Aligned_cols=96  Identities=39%  Similarity=0.539  Sum_probs=92.0

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH
Q psy875          383 PRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAAN  462 (480)
Q Consensus       383 ~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~  462 (480)
                      +.+.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN--AVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCCHHHHHHH
Confidence            348999999999999999999999999999999999999999999999999999999999999  569999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCC
Q psy875          463 HGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       463 ~~~~~~~~~Ll~~ga~~~  480 (480)
                      .|+.+++++|+++|++++
T Consensus        90 ~~~~~~v~~Ll~~g~~~~  107 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVN  107 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHHHHHHHcCCCCc
Confidence            999999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.81  E-value=5.2e-18  Score=154.66  Aligned_cols=186  Identities=20%  Similarity=0.280  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      .+..+.++..+|.+|...|++++|+.++++++++.    ..+.+....++..+|.+|. ..|++++|+.++++++.+...
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999985    1556788899999999954 559999999999999998765


Q ss_pred             C--CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc------cccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          109 N--KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS------DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       109 ~--~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      .  ++.+....++.++|.+|..+|++++|+.+|++++..      ...+....++.++|.+|..+|++++|+.+++++++
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4  334777889999999999999999999999999876      22355678999999999999999999999999998


Q ss_pred             hhhc---------------------------------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875          181 LHAR---------------------------------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHE  215 (480)
Q Consensus       181 ~~~~---------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  215 (480)
                      +...                                             ..+....++..+|.+|..+|+ +++|..+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~  276 (283)
T 3edt_B          198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK-LEAAHTLED  276 (283)
T ss_dssp             HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence            7332                                             347778899999999999999 999999999


Q ss_pred             HHHHH
Q psy875          216 KALDL  220 (480)
Q Consensus       216 ~al~~  220 (480)
                      +++++
T Consensus       277 ~al~~  281 (283)
T 3edt_B          277 CASRN  281 (283)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=1e-18  Score=163.46  Aligned_cols=203  Identities=14%  Similarity=0.067  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           37 ASCYISLAQTYKDNK-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ..+++.+|.++...| ++++|+.+|+++++.    .+....++..+|.+|.. .|++++|+.++++++...+..      
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~------  158 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAV-ESEHDQAMAAYFTAAQLMKGC------  158 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----CTTCTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcccc------
Confidence            457788888888888 888888888888877    44455667788888444 488888888888888775432      


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC-----cHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN-----FPEAV  190 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~-----~~~~~  190 (480)
                      ..++..+|.+|...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+.+++++++..+..     .+...
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            234566888888888888888888888876643  34678888888888888888888888888875431     13445


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .++..+|.++...|+ +++|+.++++++++.      +....++..+|.++..+|++++|..+++++.+
T Consensus       237 ~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          237 PLLNNLGHVCRKLKK-YAEALDYHRQALVLI------PQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHHHHHHHhhC------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            678888888888888 888888888888762      22355677888888888888888888876654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=1.8e-18  Score=161.79  Aligned_cols=206  Identities=16%  Similarity=0.151  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ..++..++.++...|++++|+.+++++++.    .+....++..+|.+|... | ++++|+.++++++...+..      
T Consensus        56 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~~~~------  124 (330)
T 3hym_B           56 ASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFAVGCYYLMV-GHKNEHARRYLSKATTLEKTY------  124 (330)
T ss_dssp             TTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHHHHHHHHHS-CSCHHHHHHHHHHHHTTCTTC------
T ss_pred             hhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHhCCcc------
Confidence            456777889999999999999999999998    555667888999995555 8 9999999999999875432      


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      ..++..+|.+|...|++++|+.+|++++...+...  .++..+|.+|...|++++|+.+++++++..    +....++..
T Consensus       125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~  198 (330)
T 3hym_B          125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH--LPMLYIGLEYGLTNNSKLAERFFSQALSIA----PEDPFVMHE  198 (330)
T ss_dssp             THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----CCChHHHHH
Confidence            45688999999999999999999999998776543  567779999999999999999999999984    344678999


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDD---KLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +|.++...|+ +++|+.++++++...+..++.   +....++..+|.++..+|++++|..+++++.++
T Consensus       199 l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          199 VGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            9999999999 999999999999987665443   334578889999999999999999999999875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.8e-18  Score=154.38  Aligned_cols=197  Identities=14%  Similarity=0.112  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC--
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK--  110 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~--  110 (480)
                      ...+++.+|.++...|++++|++++.+++++...   +.+....++..+|.+|. ..|++++|+.++++++.+.+...  
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~  115 (258)
T 3uq3_A           37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADIL  115 (258)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHH
Confidence            3678999999999999999999999999998411   22223788999999954 55999999999999998543211  


Q ss_pred             ------------------CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHH
Q psy875          111 ------------------DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAV  172 (480)
Q Consensus       111 ------------------~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~  172 (480)
                                        ..+....++..+|.++...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+
T Consensus       116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~  193 (258)
T 3uq3_A          116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAI  193 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCHHHHH
Confidence                              24556778999999999999999999999999977654  4578999999999999999999


Q ss_pred             HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875          173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL  240 (480)
Q Consensus       173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  240 (480)
                      .+++++++..    +....++..+|.++...|+ +++|..++++++++....+..+....+...++.+
T Consensus       194 ~~~~~al~~~----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          194 ADCNKAIEKD----PNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhC----HHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            9999999983    4446789999999999999 9999999999999987666555555565555543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.80  E-value=6.5e-19  Score=154.63  Aligned_cols=195  Identities=15%  Similarity=0.045  Sum_probs=147.5

Q ss_pred             hHHHhhccchhhhhhhHHHHh-hhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Q psy875            4 KIALSRGIGLSDSLDSACTEL-HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG   82 (480)
Q Consensus         4 ~~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg   82 (480)
                      ..++.+|.. +...++....+ .+.+.....+....+++.+|.++...|++++|+.+|++++++    .|....++..+|
T Consensus         6 ~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg   80 (217)
T 2pl2_A            6 QNPLRLGVQ-LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR----TPRYLGGYMVLS   80 (217)
T ss_dssp             HHHHHHHHH-HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHH
Confidence            456777777 44444422221 122222333455778999999999999999999999999999    677778899999


Q ss_pred             HHHHHhh-----------ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875           83 DLYELQE-----------KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL  151 (480)
Q Consensus        83 ~~y~~~~-----------~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~  151 (480)
                      .+ +...           |++++|+..+++++++.+.      ...++.++|.+|..+|++++|+..|++++...   ..
T Consensus        81 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~  150 (217)
T 2pl2_A           81 EA-YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALALE---DT  150 (217)
T ss_dssp             HH-HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC
T ss_pred             HH-HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cc
Confidence            99 6777           9999999999999998543      25678899999999999999999999999877   34


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKAL  218 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al  218 (480)
                      ..++.++|.+|..+|++++|+.+|++++++    .|....++.++|.++...|+ +++|+..|+++-
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~  212 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALEQ----APKDLDLRVRYASALLLKGK-AEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTC----------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHccC-HHHHHHHHHHHh
Confidence            578899999999999999999999999998    45556789999999999999 999999998763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=3.7e-18  Score=145.54  Aligned_cols=169  Identities=16%  Similarity=0.156  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHH
Q psy875           74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS  153 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~  153 (480)
                      .+.+|+++|.+|... |+|++|+.+|++|+++.+..      ..++..+|.+|..+|++++|+..+.+++...+.  ...
T Consensus         4 ~~~iy~~lG~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~   74 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTK-GDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAE   74 (184)
T ss_dssp             CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHH
Confidence            456889999996555 99999999999999985432      568899999999999999999999999866644  457


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTV  233 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  233 (480)
                      ++..+|.++...+++++|...+.+++++    .+....++..+|.++..+|+ +++|+..|++++++      .|....+
T Consensus        75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~----~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~------~p~~~~~  143 (184)
T 3vtx_A           75 AYYILGSANFMIDEKQAAIDALQRAIAL----NTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISI------KPGFIRA  143 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHh------cchhhhH
Confidence            8889999999999999999999999998    44456788999999999999 99999999999987      4445678


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          234 MRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       234 ~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      +..+|.+|..+|++++|..+++++.++..
T Consensus       144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          144 YQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999987643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.80  E-value=2.9e-20  Score=173.90  Aligned_cols=135  Identities=22%  Similarity=0.174  Sum_probs=115.2

Q ss_pred             ccCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCc---HHHHHHHHhcC-CchhhhhhhhccccCCC
Q psy875          312 RKRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGA---QEVRKLLSLLN-ADLLVHLNLSATLETPT  376 (480)
Q Consensus       312 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~---~~~v~~L~~~g-~~~~~~~~~~~~~~~~~  376 (480)
                      ..|.||||+|+..           .+.+++..+..+.+||++|+..|+   .++++.|++.+ ++++..           
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~-----------  197 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE-----------  197 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE-----------
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC-----------
Confidence            3588888888665           456778888899999999999999   78888888887 566654           


Q ss_pred             ccccCCCCCchHHHHHHH----cCCHHHHHHHHhcCC-------------------------------------------
Q psy875          377 TSLLEKPRGETALHVAAA----RGNLTLVQSLLKQGH-------------------------------------------  409 (480)
Q Consensus       377 ~~~~~~~~g~~~l~~a~~----~~~~~~~~~ll~~g~-------------------------------------------  409 (480)
                           +..|.||||+|+.    .|+.+++++|++.+.                                           
T Consensus       198 -----d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll  272 (327)
T 1sw6_A          198 -----DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  272 (327)
T ss_dssp             -----CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             -----CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHH
Confidence                 3459999999999    899999999998743                                           


Q ss_pred             --CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          410 --PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       410 --~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                        ++|.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..|
T Consensus       273 ~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~--~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--CCCTTSCCGGGGTCC--
T ss_pred             HhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHhcC
Confidence              578888999999999999999999999999999999  66999999999998654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.80  E-value=3.1e-18  Score=151.52  Aligned_cols=195  Identities=14%  Similarity=0.121  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP-EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      .+++.+|.++...|+|++|+.+|++++++    .+ ....++..+|.+|... |++++|+.++++++...+      ...
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p------~~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL----TNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNY------NLA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTC------SHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCc------chH
Confidence            68899999999999999999999999998    32 3345677799995554 999999999999997743      246


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-----HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHH--H
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-----LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE--A  189 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~  189 (480)
                      .++..+|.+|..+|++++|+.+|++++...+...     .+.++.++|.++..+|++++|+.+|++++++    .|.  .
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~  152 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWK  152 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCccc
Confidence            7899999999999999999999999998877643     3478999999999999999999999999998    556  6


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ..++.++|.+|..+|+ .     .++++..+..   ..     .....+......+.+++|..+++++.++.
T Consensus       153 ~~~~~~l~~~~~~~~~-~-----~~~~a~~~~~---~~-----~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          153 TDALYSLGVLFYNNGA-D-----VLRKATPLAS---SN-----KEKYASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHHHHHHHHHH-H-----HHHHHGGGTT---TC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH-H-----HHHHHHhccc---CC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8899999999988777 4     2333322210   00     01112333445566777777777776664

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=9.2e-19  Score=172.30  Aligned_cols=200  Identities=13%  Similarity=0.182  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           36 LASCYISLAQTYKDNKQY-NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      .+.+++.+|.++...|+| ++|+++|++++++    .+....++..+|.+|... |++++|+.+|++|+++.+   +   
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p---~---  169 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----EPELVEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCK---N---  169 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCC---C---
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC---C---
Confidence            467899999999999999 9999999999999    667778999999995555 999999999999998743   2   


Q ss_pred             HHHHHHHHHHHHHhc---------CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh--------ccHHHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKH---------DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN--------KQYNLAVDYFNK  177 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~--------~~~~~A~~~~~~  177 (480)
                       ..++.++|.+|..+         |++++|+.+|++++...+.  ...++.++|.+|..+        |++++|+.+|++
T Consensus       170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ  246 (474)
T ss_dssp             -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence             37889999999999         9999999999999987654  457899999999999        999999999999


Q ss_pred             HHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          178 ELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       178 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      ++++.+. .+..+.++.++|.+|..+|+ +++|+.+|++++++      .+....++..++.++..+|++++|...+.+.
T Consensus       247 al~~~p~-~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          247 AEKVDRK-ASSNPDLHLNRATLHKYEES-YGEALEGFSQAAAL------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHCGG-GGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhCCC-cccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9998321 11667899999999999999 99999999999987      3444578889999999999999999877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=7.1e-18  Score=157.41  Aligned_cols=217  Identities=17%  Similarity=0.159  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc--
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD--  112 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~--  112 (480)
                      ....++..+|.++...|++++|+.+++++++.    .+....++..+|.+|.. .|++++|+.++++++...+.....  
T Consensus        53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~  127 (327)
T 3cv0_A           53 EREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHTN-EHNANAALASLRAWLLSQPQYEQLGS  127 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSTTTTTC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHH
Confidence            35678889999999999999999999999998    55567788889999544 499999999999988654332111  


Q ss_pred             -----------------------------------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875          113 -----------------------------------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL  151 (480)
Q Consensus       113 -----------------------------------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~  151 (480)
                                                               +....++..+|.+|...|++++|+.++++++...+  ..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~  205 (327)
T 3cv0_A          128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DD  205 (327)
T ss_dssp             ------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC
T ss_pred             HHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--Cc
Confidence                                                     11235677999999999999999999999987664  34


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL--  229 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--  229 (480)
                      ..++..+|.+|...|++++|+.+++++++..    +....++..+|.++...|+ +++|+.++++++.+.........  
T Consensus       206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~  280 (327)
T 3cv0_A          206 AQLWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVGGTTPTGEA  280 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccccccccc
Confidence            5789999999999999999999999999983    3446688999999999999 99999999999988654332222  


Q ss_pred             ----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          230 ----IRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       230 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                          ...++..++.++..+|++++|...++++.+....
T Consensus       281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence                6778899999999999999999999887765443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.80  E-value=1.2e-17  Score=153.79  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP---EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .....+...+..+...|+|++|++++.++++.. ...+   .....+..+|.+ +...|++++|+.++++|+.+.....+
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAY-VLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            445566788899999999999999999999873 2222   234456678888 45559999999999999998877777


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc---cc-cc-HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD---LC-KD-LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--  184 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~---~~-~~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--  184 (480)
                      ......++.++|.+|..+|++++|+.+|++++...   +. +. ...++.++|.+|..+|+|++|+.++++++++...  
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence            77778899999999999999999999999998542   22 12 2378999999999999999999999999998543  


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCchHHH-HHHHHHHHHHHHHcCCcHH
Q psy875          185 NFPEAVKTLGEIGDLYELQEKPFELV-VSTHEKALDLARQNKDDKL  229 (480)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~A-~~~~~~al~~~~~~~~~~~  229 (480)
                      +....+.++.++|.+|..+|+ +++| ..++++|+.+.+..++...
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~-~~~Ai~~~~~~Al~~~~~~~~~~~  275 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFFDILEMHAY  275 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHhCcHhh
Confidence            344568899999999999999 9999 8889999999988877665

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.80  E-value=5.8e-17  Score=154.65  Aligned_cols=238  Identities=10%  Similarity=0.015  Sum_probs=190.4

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hcc--CchHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875           24 LHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARN--FPEAVKTLGEIGDLYELQEKSFEIVQSTH   99 (480)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~lg~~y~~~~~~~~~A~~~~   99 (480)
                      +.+..........+.++..+|.++...|++++|+.++++++++.  .+.  .+....++.++|.+|+.. |++++|+.++
T Consensus        80 l~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~  158 (373)
T 1hz4_A           80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASA  158 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence            44444444455667888999999999999999999999999985  122  255677888999995555 9999999999


Q ss_pred             HHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HHH--HHHHHHHHHHhhccHHHHHHH
Q psy875          100 EKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LAS--CYISLAQTYKDNKQYNLAVDY  174 (480)
Q Consensus       100 ~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~~--~~~~la~~y~~~~~~~~A~~~  174 (480)
                      ++++.+.+..++.. ...++.++|.++...|++++|..++++++.......   ...  ....++.++...|++++|..+
T Consensus       159 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  237 (373)
T 1hz4_A          159 RSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW  237 (373)
T ss_dssp             HHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999887765444 557888999999999999999999998886543321   111  122455668899999999999


Q ss_pred             HHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy875          175 FNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIK  254 (480)
Q Consensus       175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  254 (480)
                      +++++.............+..+|.++...|+ +++|...+++++......+.......++..++.++...|++++|...+
T Consensus       238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          238 LRHTAKPEFANNHFLQGQWRNIARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHhCCCCCCCcchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9998876433222233457889999999999 999999999999998888777777789999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy875          255 TELKSLEEKL  264 (480)
Q Consensus       255 ~~~~~l~~~~  264 (480)
                      +++..+....
T Consensus       317 ~~al~~~~~~  326 (373)
T 1hz4_A          317 LDALKLANRT  326 (373)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhccc
Confidence            9999987653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.80  E-value=1.2e-17  Score=157.99  Aligned_cols=198  Identities=15%  Similarity=0.146  Sum_probs=112.7

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875           44 AQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK  123 (480)
Q Consensus        44 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~  123 (480)
                      |.++...|++++|+++++++++.    .+....++..+|.+| ...|++++|+.++++++...+..      ..++..+|
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la  195 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECF-IKEGEPRKAISDLKAASKLKSDN------TEAFYKIS  195 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCSCC------HHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh----CCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            45555555555555555555554    333334455555553 23355555555555555442211      23455666


Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHH----------HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLAS----------CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~----------~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                      .+|...|++++|+.+|++++...+......          ....+|.++...|++++|+.+++++++..+.++......+
T Consensus       196 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  275 (359)
T 3ieg_A          196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK  275 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            666666666666666666655444322211          1223466666666666666666666666544444444556


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ..+|.++...|+ +++|+.+++++++.      .+....++..+|.++...|++++|..+++++.+
T Consensus       276 ~~la~~~~~~~~-~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  334 (359)
T 3ieg_A          276 ERICHCFSKDEK-PVEAIRICSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE  334 (359)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC-HHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            667777777777 77777777777665      222345666777777777777777777776655

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.80  E-value=1.5e-18  Score=157.76  Aligned_cols=205  Identities=16%  Similarity=0.138  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      .+++..|.+++..|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.++++++.. .  .++.....
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~-~--~~~~~~~~   75 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSK-V--NATKAKSA   75 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTT-S--CTTTCCHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhc-c--CchhHHHH
Confidence            45788999999999999999999999998    444445778899995555 9999999999999983 2  33444577


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      ++..+|.+|...|++++|+.+|++++...+.  ...++..+|.+|..+|++++|+.+|+++++.    .+....++.++|
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~  149 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----TTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS----SCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc----CCCcHHHHHHHH
Confidence            8999999999999999999999999987654  3478999999999999999999999999988    444567899999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHh
Q psy875          198 DLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK---FTELEQIKTELKSLEEK  263 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~l~~~  263 (480)
                      ...+..++ +++|+.+|++++++.      +....++..++.++..+|+   +++|..+++++.++...
T Consensus       150 ~~~~~~~~-~~~A~~~~~~a~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  211 (272)
T 3u4t_A          150 QAYYYNKE-YVKADSSFVKVLELK------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP  211 (272)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence            55555668 999999999999873      3335778889999999999   99999999999987654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.80  E-value=2.3e-18  Score=176.17  Aligned_cols=174  Identities=12%  Similarity=0.207  Sum_probs=154.8

Q ss_pred             cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc
Q psy875           70 NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK  149 (480)
Q Consensus        70 ~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~  149 (480)
                      ..|..+.+++++|.+|..+ |++++|+.+|++|+++.+..      ..++.++|.+|..+|++++|+.+|+++++..  +
T Consensus         4 s~P~~a~al~nLG~~~~~~-G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P   74 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRIS--P   74 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             CCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence            3577889999999995555 99999999999999985432      6789999999999999999999999999776  4


Q ss_pred             cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875          150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL  229 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  229 (480)
                      ..+.++.++|.+|..+|++++|+++|++++++    .+..+.++.++|.+|..+|+ +++|+.+|++|+++      .+.
T Consensus        75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l------~P~  143 (723)
T 4gyw_A           75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGN-IPEAIASYRTALKL------KPD  143 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CSC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCC
Confidence            55689999999999999999999999999999    55567899999999999999 99999999999988      445


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          230 IRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      ...++.+|+.++..+|++++|.+.++++.++...
T Consensus       144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            5678999999999999999999999999987644

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.79  E-value=2.3e-17  Score=150.22  Aligned_cols=223  Identities=15%  Similarity=0.106  Sum_probs=177.4

Q ss_pred             hHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHH
Q psy875            4 KIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLG   79 (480)
Q Consensus         4 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   79 (480)
                      +.++.+|.. +...++....+...++.-. .....+++.+|.+|..    .+++++|+.+|+++++.    .  ...++.
T Consensus         7 ~a~~~lg~~-~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--~~~a~~   78 (273)
T 1ouv_A            7 KELVGLGAK-SYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N--YSNGCH   78 (273)
T ss_dssp             HHHHHHHHH-HHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--CHHHHH
T ss_pred             HHHHHHHHH-HHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--CHHHHH
Confidence            456677776 4333442222111111100 2334689999999999    99999999999999987    2  466788


Q ss_pred             HHHHHHHH---hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHH
Q psy875           80 EIGDLYEL---QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLA  152 (480)
Q Consensus        80 ~lg~~y~~---~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~  152 (480)
                      .+|.+|..   ..+++++|+.+|++|+...        ...++.++|.+|..    .+++++|+.+|++++...    ..
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~  146 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DG  146 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cH
Confidence            99999555   0499999999999999762        25678999999999    999999999999998654    24


Q ss_pred             HHHHHHHHHHHh----hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHc
Q psy875          153 SCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       153 ~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~  224 (480)
                      .++.++|.+|..    .+++++|+.+|+++++..      ...++.++|.+|..    .++ +++|+.+|+++++.    
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~----  215 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKN-FKEALARYSKACEL----  215 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhC----
Confidence            678899999998    999999999999998761      24678899999999    999 99999999999875    


Q ss_pred             CCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHH
Q psy875          225 KDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTELKSLE  261 (480)
Q Consensus       225 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~l~  261 (480)
                      + +   ..++..++.+|..    .+++++|..+++++.++.
T Consensus       216 ~-~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          216 E-N---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             T-C---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             C-C---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            1 1   5678899999999    999999999999998864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.78  E-value=2.2e-17  Score=142.99  Aligned_cols=190  Identities=13%  Similarity=0.104  Sum_probs=160.0

Q ss_pred             hccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875           48 KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK  127 (480)
Q Consensus        48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~  127 (480)
                      ...|++++|.+.++...    .+......++..+|.+|... |++++|+.++++++.+....++.+....++.++|.+|.
T Consensus         3 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   77 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL----AHPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER   77 (203)
T ss_dssp             ----CHHHHHHHHHHHH----TSTTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            46789999999554432    23556788999999995555 99999999999999999999888999999999999999


Q ss_pred             hcCChHHHHHHHHHHhcccc----cc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHH
Q psy875          128 KHDNLDSACSELHTVLSSDL----CK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLY  200 (480)
Q Consensus       128 ~~~~~~~A~~~~~~~l~~~~----~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~  200 (480)
                      ..|++++|+.++++++....    .+ ..+.++.++|.++..+|++++|+.++++++++...  ++...+.++.++|.++
T Consensus        78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A           78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA  157 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            99999999999999887632    12 45788999999999999999999999999988654  4556677889999999


Q ss_pred             HHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875          201 ELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  243 (480)
                      ...|+ +++|..++++++++.++.++......+...++.+...
T Consensus       158 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
T 3gw4_A          158 QQEKN-LLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHH  199 (203)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred             HHCcC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhc
Confidence            99999 9999999999999999999999888888888766443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.78  E-value=1.3e-18  Score=138.43  Aligned_cols=94  Identities=47%  Similarity=0.754  Sum_probs=91.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++  .+|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCcHHHHHHHcC
Confidence            8999999999999999999999999999999999999999999999999999999999999  56899999999999999


Q ss_pred             CHHHHHHHHHcCCCCC
Q psy875          465 HTDIVQALVSAGAEVS  480 (480)
Q Consensus       465 ~~~~~~~Ll~~ga~~~  480 (480)
                      +.+++++|+++|++++
T Consensus        80 ~~~~~~~Ll~~g~~~~   95 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVN   95 (126)
T ss_dssp             CHHHHHHHHHTTCCTT
T ss_pred             hHHHHHHHHHcCCCCc
Confidence            9999999999999874

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.78  E-value=1.1e-17  Score=154.05  Aligned_cols=191  Identities=13%  Similarity=0.055  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPE---AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ...+...+..+...|+|++|+++++++++. ....+.   ....+..+|.+| ...+++++|+.++++|+.+.....+..
T Consensus        75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHhcccccHH
Confidence            344556678888999999999999999886 332232   234455689984 455899999999999999877777777


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc-----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--Cc
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD-----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NF  186 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~  186 (480)
                      ..+.++.++|.+|..+|++++|+.+|++++...     ..+..+.++.++|.+|..+|+|++|++++++++++...  +.
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence            778899999999999999999999999998532     22455779999999999999999999999999998655  45


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL  229 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  229 (480)
                      ...+.++.++|.+|..+|+++++|+.+|++|+.+++..++...
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~  275 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY  275 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence            6678999999999999995269999999999999998877653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=3.4e-18  Score=168.57  Aligned_cols=214  Identities=16%  Similarity=0.018  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~  107 (480)
                      .+..+.+|+.||.++..+|++++|+++|++|+++.     ....+..+.+|.++|.+|+.. |++++|+.++++++.+.+
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhH
Confidence            34457789999999999999999999999999986     223456678899999996655 999999999999999877


Q ss_pred             cCCCc--hHHHHHHHHHHHHHHhc--CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh---hccHHHHHHHHHHHHh
Q psy875          108 QNKDD--KLIRTVMRSIKKLYKKH--DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD---NKQYNLAVDYFNKELR  180 (480)
Q Consensus       108 ~~~~~--~~~~~~~~~l~~~y~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~---~~~~~~A~~~~~~al~  180 (480)
                      .....  ...+.++.++|..+...  ++|++|+.+|++++...|.  ...++..+|.++..   .+++++|++.++++++
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~  203 (472)
T 4g1t_A          126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR  203 (472)
T ss_dssp             HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred             hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            65432  34567788888877665  5799999999999987754  34667777777554   4677899999999999


Q ss_pred             hhhcCcHHHHHHHHHHHHH----HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          181 LHARNFPEAVKTLGEIGDL----YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                      +.+.+    ..++..+|..    +...++ +++|..++++++..      .+....++..+|.+|...|++++|..++++
T Consensus       204 l~p~~----~~~~~~l~~~~~~~~~~~~~-~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  272 (472)
T 4g1t_A          204 LNPDN----QYLKVLLALKLHKMREEGEE-EGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKDEPDKAIELLKK  272 (472)
T ss_dssp             HCSSC----HHHHHHHHHHHHHCC-------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCcc----hHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            84443    3445555544    445567 88999999999876      344566788999999999999999999999


Q ss_pred             HHHH
Q psy875          257 LKSL  260 (480)
Q Consensus       257 ~~~l  260 (480)
                      +.++
T Consensus       273 al~~  276 (472)
T 4g1t_A          273 ALEY  276 (472)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.78  E-value=3.2e-17  Score=150.91  Aligned_cols=190  Identities=14%  Similarity=0.094  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----cc
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KD  150 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~  150 (480)
                      ...+...+..|... |+|++|+.++.+++...+...........+..+|.+|...|++++|+.+|++++.....    ..
T Consensus        75 ~~~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            34455667774555 99999999999999887654444555666788999999999999999999999865433    23


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc
Q psy875          151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD  227 (480)
Q Consensus       151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  227 (480)
                      .+.++.++|.+|..+|+|++|+.+|++++++...   +......++.++|.+|..+|+ |++|+.++++++++....++.
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCcH
Confidence            4678999999999999999999999999977544   222334799999999999999 999999999999998877777


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHhhcc
Q psy875          228 KLIRTVMRSMKKLYKKHDKFTEL-EQIKTELKSLEEKLDL  266 (480)
Q Consensus       228 ~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~l~~~~~~  266 (480)
                      .....++..+|.+|..+|++++| ..+++++..+.+.++.
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            77889999999999999999999 8899999998877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.78  E-value=3.4e-17  Score=150.75  Aligned_cols=189  Identities=15%  Similarity=0.115  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDL  151 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~  151 (480)
                      ..+...+..+... |+|++|+..+++++......++.......+..+|.+|...+++++|+.+|++++.....    ...
T Consensus        76 ~~l~~~i~~~~~~-~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  154 (293)
T 3u3w_A           76 KQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred             HHHHHHHHHHHHH-hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence            3344446663455 99999999999999865544333444556777999999999999999999999975332    223


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                      +.++.++|.+|..+|+|++|+.+|+++++....   +.+..+.++.++|.+|..+|+ |++|+.++++++++.+..++..
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHcCcHH
Confidence            668999999999999999999999999987553   567778899999999999999 9999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhhcc
Q psy875          229 LIRTVMRSMKKLYKKHDK-FTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       229 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~l~~~~~~  266 (480)
                      ....++..+|.+|.++|+ +++|..+++++..+.+.++.
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~  272 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            899999999999999995 69999999999999987765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=1.7e-18  Score=164.49  Aligned_cols=228  Identities=9%  Similarity=0.026  Sum_probs=178.7

Q ss_pred             hHHHhhccchhhhhhhHHHHhh-hhhhhhHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875            4 KIALSRGIGLSDSLDSACTELH-TVLSSDLCKDLASCYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTLGEI   81 (480)
Q Consensus         4 ~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l   81 (480)
                      .+|..+|.+ +...+....++. +.+.....+....+++++|.++...|+ +++|+.+|++++++    .+....+|+++
T Consensus        98 ~a~~~lg~~-~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~~a~~~~  172 (382)
T 2h6f_A           98 DVYDYFRAV-LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHH-HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred             HHHHHHHHH-HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCHHHHHHH
Confidence            456666666 333333222211 122223444567899999999999997 99999999999999    77788899999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT  161 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~  161 (480)
                      |.+| ..+|++++|+.+|++|+.+.+..      ..++.++|.++..+|++++|+.+|++++...+  ....+++++|.+
T Consensus       173 g~~~-~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--~~~~a~~~lg~~  243 (382)
T 2h6f_A          173 RVLV-EWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--RNNSVWNQRYFV  243 (382)
T ss_dssp             HHHH-HHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHHH-HHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence            9994 55599999999999999985533      57889999999999999999999999997765  455889999999


Q ss_pred             HHh-hccHHHH-----HHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy875          162 YKD-NKQYNLA-----VDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--KPFELVVSTHEKALDLARQNKDDKLIRTV  233 (480)
Q Consensus       162 y~~-~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~  233 (480)
                      +.. .|.+++|     +.+|++++++    .|....+|.++|.++...|  + +++|++.++++ +      ..+....+
T Consensus       244 l~~l~~~~~eA~~~~el~~~~~Al~l----~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~-~------~~p~~~~a  311 (382)
T 2h6f_A          244 ISNTTGYNDRAVLEREVQYTLEMIKL----VPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDL-Q------PSHSSPYL  311 (382)
T ss_dssp             HHHTTCSCSHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHH-T------TTCCCHHH
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHh-c------cCCCCHHH
Confidence            999 5655888     5999999998    4555679999999999988  6 89998888664 1      13334567


Q ss_pred             HHHHHHHHHHcC--------C-hHHHHHHHHHH
Q psy875          234 MRSMKKLYKKHD--------K-FTELEQIKTEL  257 (480)
Q Consensus       234 ~~~l~~~~~~~g--------~-~~~A~~~~~~~  257 (480)
                      +..|+.+|.++|        + +++|..+++++
T Consensus       312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          312 IAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            888999999985        2 47888888876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.78  E-value=4.5e-17  Score=159.39  Aligned_cols=203  Identities=15%  Similarity=0.121  Sum_probs=170.0

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      ++.+|.++...|++++|+.+|+++++.    .+....++..+|.+|.. .|++++|+.++++++...+..      ..++
T Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~------~~~~  214 (450)
T 2y4t_A          146 LRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKNDN------TEAF  214 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHCSC------HHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC------HHHH
Confidence            566788899999999999999999988    55666788899999544 599999999999999875432      4678


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHH-H---------HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA-S---------CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~-~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                      ..+|.+|...|++++|+.+|++++...+..... .         ....+|.++...|++++|+.+|++++++.+.++...
T Consensus       215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  294 (450)
T 2y4t_A          215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT  294 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence            899999999999999999999998776553321 1         123449999999999999999999999866655556


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ...+..+|.++...|+ +++|+.++++++.+      .+....++..++.++...|++++|..+++++.++
T Consensus       295 ~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          295 VRSKERICHCFSKDEK-PVEAIRVCSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            7789999999999999 99999999999887      3334578889999999999999999999998763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.78  E-value=1.1e-16  Score=152.80  Aligned_cols=224  Identities=8%  Similarity=-0.071  Sum_probs=184.9

Q ss_pred             hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccC--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           31 DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF--PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        31 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      +.....+.++..+|.++...|++++|+.++++++... ...  .....++..+|.+|... |++++|+.++++++.+.+.
T Consensus         8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~   85 (373)
T 1hz4_A            8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQ   85 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHh
Confidence            3455667888999999999999999999999999983 222  22456788899995555 9999999999999999998


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          109 NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       109 ~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      .++......++.++|.++...|++++|+.++++++...+.      +....++.++|.+|..+|++++|..++++++++.
T Consensus        86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            8888778888999999999999999999999998876532      3456788999999999999999999999999986


Q ss_pred             hc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          183 AR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       183 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      .. .++....++..+|.++...|+ +++|..++++++.+....+.+. ........++.++...|++++|..+++++
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            65 233356788999999999999 9999999999998876655432 22222335667789999999999998765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.78  E-value=3.9e-17  Score=154.35  Aligned_cols=202  Identities=14%  Similarity=0.078  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +..++.+|..+...|++++|+.+|+++++.    .+....++..+|.+|.. .|++++|+.++++++...+..      .
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~------~   71 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIALKMDF------T   71 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCc------c
Confidence            467899999999999999999999999998    55667788999999555 499999999999999884322      4


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHH------------HHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYI------------SLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~------------~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      .++..+|.+|...|++++|+.+|++++...+.. ....++.            .+|.++...|++++|+.+++++++.. 
T Consensus        72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-  150 (359)
T 3ieg_A           72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-  150 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence            678999999999999999999999999877610 2223333            34899999999999999999999983 


Q ss_pred             cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          184 RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                         +....++..+|.++...|+ +++|+..+++++..      .+....++..++.++...|++++|..+++++.++
T Consensus       151 ---~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  217 (359)
T 3ieg_A          151 ---VWDAELRELRAECFIKEGE-PRKAISDLKAASKL------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  217 (359)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ---CCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence               3446789999999999999 99999999999875      2333468889999999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.78  E-value=2.1e-17  Score=149.50  Aligned_cols=206  Identities=15%  Similarity=0.173  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      .+..++.+|..++..|+|++|+..|+++++. .+..+....+++.+|.+|+.. |++++|+.+|++++...+..   +..
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~---~~~   88 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-GRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQID---PRV   88 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-CSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC---TTH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCC---chh
Confidence            3578999999999999999999999999988 555555588999999996555 99999999999999986543   345


Q ss_pred             HHHHHHHHHHHHh--------cCChHHHHHHHHHHhcccccccH-HHHH--------------HHHHHHHHhhccHHHHH
Q psy875          116 RTVMRSIKKLYKK--------HDNLDSACSELHTVLSSDLCKDL-ASCY--------------ISLAQTYKDNKQYNLAV  172 (480)
Q Consensus       116 ~~~~~~l~~~y~~--------~~~~~~A~~~~~~~l~~~~~~~~-~~~~--------------~~la~~y~~~~~~~~A~  172 (480)
                      ..++..+|.+|..        +|++++|+.+|++++...|.... ..+.              +.+|.+|..+|+|++|+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            6789999999999        99999999999999988776432 3333              88999999999999999


Q ss_pred             HHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh----------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy875          173 DYFNKELRLHARNFPEAVKTLGEIGDLYELQ----------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYK  242 (480)
Q Consensus       173 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  242 (480)
                      .+|+++++..+. .+....++..+|.+|..+          |+ +++|+..|+++++.   .++.+....+...++.++.
T Consensus       169 ~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~-~~~A~~~~~~~~~~---~p~~~~~~~a~~~l~~~~~  243 (261)
T 3qky_A          169 VTYEAVFDAYPD-TPWADDALVGAMRAYIAYAEQSVRARQPER-YRRAVELYERLLQI---FPDSPLLRTAEELYTRARQ  243 (261)
T ss_dssp             HHHHHHHHHCTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC-CchHHHHHHHHHHHHHHhcccchhhcccch-HHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHH
Confidence            999999988544 234678899999999977          88 99999999998765   3556667788888888888


Q ss_pred             HcCChHHHH
Q psy875          243 KHDKFTELE  251 (480)
Q Consensus       243 ~~g~~~~A~  251 (480)
                      .+++++++.
T Consensus       244 ~~~~~~~~~  252 (261)
T 3qky_A          244 RLTELEGDA  252 (261)
T ss_dssp             HHHHHHTCT
T ss_pred             HHHHhhhhh
Confidence            888876543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.77  E-value=3.6e-20  Score=165.60  Aligned_cols=93  Identities=32%  Similarity=0.397  Sum_probs=89.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHHHHHHHc
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPLHEAANH  463 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl~~A~~~  463 (480)
                      |.||||+|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++  .++ ..|.||||+|+..
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--HRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCSSSCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCCCCCCCHHHHHHHc
Confidence            8999999999999999999999 99999999999999999999999999999999999999  446 7899999999999


Q ss_pred             CCHHHHHHHHHcCCCCC
Q psy875          464 GHTDIVQALVSAGAEVS  480 (480)
Q Consensus       464 ~~~~~~~~Ll~~ga~~~  480 (480)
                      |+.+++++|+++|++++
T Consensus       122 g~~~~v~~Ll~~ga~~~  138 (244)
T 3ui2_A          122 VRPEVVEALVELGADIE  138 (244)
T ss_dssp             TCHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHCCCCCC
Confidence            99999999999999985

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=1.7e-18  Score=134.04  Aligned_cols=90  Identities=32%  Similarity=0.427  Sum_probs=84.9

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                      .+.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  ..|..|.||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX--AQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccccCCCcHHHHH
Confidence            35569999999999999999999999999999999999999999999999999999999999999  5699999999999


Q ss_pred             HHcCCHHHHHHH
Q psy875          461 ANHGHTDIVQAL  472 (480)
Q Consensus       461 ~~~~~~~~~~~L  472 (480)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.77  E-value=3.8e-17  Score=166.03  Aligned_cols=205  Identities=14%  Similarity=0.075  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ...+++.+|.+|...|++++|+++|++++++    .+....+|..+|.+|.. .|++++|+..|++++...+..      
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~------  440 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGT------  440 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTC------
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc------
Confidence            3567888999999999999999999999998    55666788899999544 499999999999999775432      


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKT  192 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~  192 (480)
                      ..++..+|.+|...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+++|+++++..+.   ++.....+
T Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~  518 (597)
T 2xpi_A          441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT  518 (597)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence            456788999999999999999999999876543  4477999999999999999999999999988543   33334788


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +..+|.++...|+ +++|+..++++++..      +....++..++.+|...|++++|..+++++.++
T Consensus       519 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          519 WANLGHAYRKLKM-YDAAIDALNQGLLLS------TNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            9999999999999 999999999998772      333578889999999999999999999998875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.77  E-value=2.1e-17  Score=165.56  Aligned_cols=206  Identities=18%  Similarity=0.188  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ..+++.+|.++...|++++|+++|+++++.    .+....++..+|.+|. ..|++++|+.++++++...+..      .
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~------~  344 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPEN------V  344 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC------S
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCC------H
Confidence            567888999999999999999999999888    5556677888999954 4499999999999999875432      3


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCc--HHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF--PEAVKTLG  194 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~  194 (480)
                      .++..+|.+|...|++++|+.+|++++...+..  ..++..+|.+|...|++++|+.+|+++++..+...  ......+.
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  422 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI  422 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            567889999999999999999999988766443  46788899999999999999999999998865422  22234467


Q ss_pred             HHHHHHHHh----------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQ----------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       195 ~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      .+|.++...          |+ +++|+.+|+++++.      .+....++..++.+|..+|++++|..+++++.++..
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  493 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEK-FNAAIKLLTKACEL------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR  493 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHH-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhccchhhhHhH-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            788888888          99 99999999999877      233447889999999999999999999999988653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=2.5e-19  Score=140.19  Aligned_cols=108  Identities=29%  Similarity=0.318  Sum_probs=97.0

Q ss_pred             CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875          332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV  411 (480)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~  411 (480)
                      .+..+.++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+..++.+++++|++.|+++
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~   68 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS----------------KDGNTPLHLAAKNGHAEIVKLLLAKGADV   68 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC----------------SSSCCTTHHHHTTTCHHHHHHHTTTTCCT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------CCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            45677889999999999999999999999987653                34999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHH
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPL  457 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl  457 (480)
                      +.+|..|+||||+|+..++.+++++|+++|++++  ..+..|.||-
T Consensus        69 ~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~  112 (115)
T 2l6b_A           69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH  112 (115)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence            9999999999999999999999999999999999  5588898884

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.77  E-value=3.7e-21  Score=181.70  Aligned_cols=143  Identities=11%  Similarity=0.047  Sum_probs=101.6

Q ss_pred             CCccchhhhccCCCcCC--------------CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccc
Q psy875          314 RAPRSHFLIKRNDKDSN--------------LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSL  379 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~  379 (480)
                      ++||||+|+..|..++-              ..+..+.+++++|+..|+.++|++|+++|+++......           
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~-----------  160 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ-----------  160 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS-----------
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC-----------
Confidence            44777777666554331              11223456888888888888888888888763221100           


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCChHHHHHH-HcCCHHHHHHHHHcCCCCCCccCCCCCCcH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKV--QDSAGWLPLHEAA-NHGHTDIVQALVSAGADPNDKVQDSAGWLP  456 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tp  456 (480)
                        +. +.||||+|+..|+.++|++|+++|++++.  .|..|+||||+|+ ..|+.++|++|+++|+         .|.||
T Consensus       161 --~~-~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~ta  228 (376)
T 2aja_A          161 --AE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYA  228 (376)
T ss_dssp             --HH-HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHH
T ss_pred             --CC-CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchH
Confidence              00 37888888888888888888888888776  6777888888888 8888888888887652         26788


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Q psy875          457 LHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       457 l~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      ||+|+..|+.+++++|+++|+++
T Consensus       229 L~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          229 EIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             HHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCccc
Confidence            88888888888888888877653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.76  E-value=1.8e-18  Score=147.41  Aligned_cols=93  Identities=32%  Similarity=0.397  Sum_probs=89.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCC-CCCCcHHHHHHHc
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQD-SAGWLPLHEAANH  463 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~tpl~~A~~~  463 (480)
                      |.||||+|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++  .++ ..|+||||+|+..
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--HRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCSSSSCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCCCHHHHHHhc
Confidence            8999999999999999999999 99999999999999999999999999999999999999  446 8899999999999


Q ss_pred             CCHHHHHHHHHcCCCCC
Q psy875          464 GHTDIVQALVSAGAEVS  480 (480)
Q Consensus       464 ~~~~~~~~Ll~~ga~~~  480 (480)
                      |+.+++++|+++|++++
T Consensus       121 ~~~~~v~~Ll~~ga~~~  137 (183)
T 3deo_A          121 VRPEVVEALVELGADIE  137 (183)
T ss_dssp             TCHHHHHHHHHHTCCTT
T ss_pred             CcHHHHHHHHHcCCCCc
Confidence            99999999999999975

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.76  E-value=6.6e-17  Score=158.19  Aligned_cols=206  Identities=14%  Similarity=0.073  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .+..+.+++.+|..+...|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.+++++++..+.    
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~----   92 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIQLKMD----   92 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT----
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC----
Confidence            3456788999999999999999999999999998    566688899999995554 9999999999999988543    


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc---HH----------HHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD---LA----------SCYISLAQTYKDNKQYNLAVDYFNKEL  179 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~---~~----------~~~~~la~~y~~~~~~~~A~~~~~~al  179 (480)
                        ...++..+|.+|..+|++++|+.+|++++...+...   ..          ..+..+|.++...|++++|+.+|++++
T Consensus        93 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  170 (450)
T 2y4t_A           93 --FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL  170 (450)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              256889999999999999999999999998765432   11          124456888999999999999999999


Q ss_pred             hhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      +.    .+....++..+|.+|...|+ +++|+..|++++...      +....++..++.+|...|++++|..+++++..
T Consensus       171 ~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  239 (450)
T 2y4t_A          171 EV----CVWDAELRELRAECFIKEGE-PRKAISDLKAASKLK------NDNTEAFYKISTLYYQLGDHELSLSEVRECLK  239 (450)
T ss_dssp             HH----CTTCHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHH------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             Hh----CCCChHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88    34446789999999999999 999999999998873      22356788999999999999999999999875


Q ss_pred             H
Q psy875          260 L  260 (480)
Q Consensus       260 l  260 (480)
                      +
T Consensus       240 ~  240 (450)
T 2y4t_A          240 L  240 (450)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=1.6e-16  Score=148.18  Aligned_cols=203  Identities=14%  Similarity=0.116  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ...++.+|..+...|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.++++++...+..      .
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~   89 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKD------I   89 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------H
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCC------H
Confidence            446789999999999999999999999998    566677888999995555 99999999999999874422      4


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----------------------------------------------c
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----------------------------------------------K  149 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----------------------------------------------~  149 (480)
                      .++..+|.+|...|++++|+.+|++++...+.                                               +
T Consensus        90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A           90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            67889999999999999999999877643221                                               2


Q ss_pred             cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875          150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL  229 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  229 (480)
                      ....++..+|.+|...|++++|+.+++++++..    +....++..+|.++...|+ +++|+.+++++++..      +.
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~------~~  238 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR----PDDAQLWNKLGATLANGNR-PQEALDAYNRALDIN------PG  238 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------TT
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC------CC
Confidence            235678889999999999999999999999883    3445788899999999999 999999999998762      33


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          230 IRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ...++..++.++..+|++++|..+++++.++.
T Consensus       239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  270 (327)
T 3cv0_A          239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ  270 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            45578889999999999999999999988764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.76  E-value=7.8e-19  Score=161.54  Aligned_cols=132  Identities=21%  Similarity=0.109  Sum_probs=106.3

Q ss_pred             hccCCccchhhhccCCCcCCC------CcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhhhhccccCCCccccC
Q psy875          311 NRKRAPRSHFLIKRNDKDSNL------NLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLE  381 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  381 (480)
                      ...|+......+...+.+++.      .+..+.++|+.|+..   |+.+++++|+++|++++..+               
T Consensus       159 ~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d---------------  223 (301)
T 2b0o_E          159 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA---------------  223 (301)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCC---------------
T ss_pred             hhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCC---------------
Confidence            334444444444456667776      577889999999987   89999999999999998754               


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          382 KPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       382 ~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                       ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++        .|.||||+|+
T Consensus       224 -~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~  294 (301)
T 2b0o_E          224 -ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDY  294 (301)
T ss_dssp             -TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC---
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHH
Confidence             3599999999999999999999999999999999999999999999999999999999864        3789999999


Q ss_pred             HcCCH
Q psy875          462 NHGHT  466 (480)
Q Consensus       462 ~~~~~  466 (480)
                      ..|+.
T Consensus       295 ~~g~~  299 (301)
T 2b0o_E          295 SWVIS  299 (301)
T ss_dssp             -----
T ss_pred             hcCCc
Confidence            98864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.76  E-value=7.2e-20  Score=172.87  Aligned_cols=128  Identities=18%  Similarity=0.253  Sum_probs=103.4

Q ss_pred             CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---C
Q psy875          336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV---K  412 (480)
Q Consensus       336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~---~  412 (480)
                      +.++++.|+..|+.++|++|++.|+.......             .+..|.||||+|+..|+.++|++|+++|+++   +
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~-------------~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~  158 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKV-------------IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM  158 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---------------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHH-------------hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc
Confidence            45999999999999999999999983211100             0112789999999999999999999999763   2


Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH-HcCCHHHHHHHHHcCC
Q psy875          413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA-NHGHTDIVQALVSAGA  477 (480)
Q Consensus       413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~-~~~~~~~~~~Ll~~ga  477 (480)
                      ..+.. +||||+|+..|+.+++++|+++|++++....|..|.||||+|+ ..|+.+++++|+++|+
T Consensus       159 i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          159 IQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             cCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            22222 9999999999999999999999999873115778999999999 9999999999998764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.76  E-value=1.8e-18  Score=152.34  Aligned_cols=95  Identities=38%  Similarity=0.448  Sum_probs=91.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCCcHHHHHHH
Q psy875          384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA-GADPNDKVQDSAGWLPLHEAAN  462 (480)
Q Consensus       384 ~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~tpl~~A~~  462 (480)
                      +|.||||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|++. |++++  .+|..|.||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~--~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN--QQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC--CCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc--ccCCCCCCHHHHHHH
Confidence            389999999999999999999999999999999999999999999999999999999 99999  669999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCC
Q psy875          463 HGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       463 ~~~~~~~~~Ll~~ga~~~  480 (480)
                      .|+.+++++|+++|++++
T Consensus       150 ~~~~~~v~~Ll~~ga~~~  167 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTD  167 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSC
T ss_pred             cCCHHHHHHHHHcCCCCc
Confidence            999999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.75  E-value=2.1e-16  Score=143.85  Aligned_cols=191  Identities=23%  Similarity=0.273  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL---QEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~---~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .+.+++.+|.++...|++++|+++|+++++.      ....++..+|.+|..   ..+++++|+.+|++|++..      
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------   72 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------   72 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------
Confidence            3568899999999999999999999999874      234678899999555   0499999999999999762      


Q ss_pred             hHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhhhc
Q psy875          113 KLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~~  184 (480)
                        ...++.++|.+|..    .+++++|+.+|++++...    ...++.++|.+|..    .+++++|+.+|+++++..  
T Consensus        73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--  144 (273)
T 1ouv_A           73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--  144 (273)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence              25678899999999    999999999999998653    45789999999999    999999999999999862  


Q ss_pred             CcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHH
Q psy875          185 NFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTE  256 (480)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~  256 (480)
                          ...++.++|.+|..    .++ +++|+.+|+++++.    +    ...++..++.+|..    .+++++|..++++
T Consensus       145 ----~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  211 (273)
T 1ouv_A          145 ----DGDGCTILGSLYDAGRGTPKD-LKKALASYDKACDL----K----DSPGCFNAGNMYHHGEGATKNFKEALARYSK  211 (273)
T ss_dssp             ----CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence                24678899999999    899 99999999999865    2    23678899999999    9999999999999


Q ss_pred             HHH
Q psy875          257 LKS  259 (480)
Q Consensus       257 ~~~  259 (480)
                      +.+
T Consensus       212 a~~  214 (273)
T 1ouv_A          212 ACE  214 (273)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.3e-16  Score=162.11  Aligned_cols=211  Identities=14%  Similarity=0.112  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh------------------------------ccCchHHHHHHHHHHHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHA------------------------------RNFPEAVKTLGEIGDLY   85 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------------------------------~~~~~~~~~~~~lg~~y   85 (480)
                      -..+++.+|.+|...|++++|+++|+++++...                              ...+....++..+|.+|
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  383 (597)
T 2xpi_A          304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY  383 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            356677788888888888888888888776510                              11233456778889995


Q ss_pred             HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh
Q psy875           86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN  165 (480)
Q Consensus        86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~  165 (480)
                      ... |++++|+.+|++++++.+.      ...++..+|.+|...|++++|+++|++++...+.  ...++..+|.+|...
T Consensus       384 ~~~-g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  454 (597)
T 2xpi_A          384 LCV-NKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG--THLPYLFLGMQHMQL  454 (597)
T ss_dssp             HHT-TCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT--CSHHHHHHHHHHHHH
T ss_pred             HHh-ccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHc
Confidence            444 9999999999999886432      2457889999999999999999999998876543  346788999999999


Q ss_pred             ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHc
Q psy875          166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL-IRTVMRSMKKLYKKH  244 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~  244 (480)
                      |++++|+++|+++++..+.    ...++..+|.++...|+ +++|+.+|+++++.....+..+. ...++..++.++...
T Consensus       455 g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          455 GNILLANEYLQSSYALFQY----DPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence            9999999999999987433    35679999999999999 99999999999998777554444 478999999999999


Q ss_pred             CChHHHHHHHHHHHHH
Q psy875          245 DKFTELEQIKTELKSL  260 (480)
Q Consensus       245 g~~~~A~~~~~~~~~l  260 (480)
                      |++++|..+++++.++
T Consensus       530 g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLL  545 (597)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999998875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.75  E-value=4e-17  Score=145.48  Aligned_cols=199  Identities=15%  Similarity=0.163  Sum_probs=149.1

Q ss_pred             hhHHHhhccchhhhhhhHHHHhh-hhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875            3 FKIALSRGIGLSDSLDSACTELH-TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI   81 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l   81 (480)
                      ...|+.+|.. +...++....+. +.+.....+....++..+|.++...|++++|+.+++++++.    .+....++..+
T Consensus        23 ~~~~~~~a~~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l   97 (243)
T 2q7f_A           23 SMTGGQQMGR-GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL----DSSAATAYYGA   97 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred             HHHHHHHHHH-HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcchHHHHHH
Confidence            3456666666 334444222211 11111122233678999999999999999999999999998    55667788999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT  161 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~  161 (480)
                      |.+|.. .|++++|+.++++++...+..      ..++..+|.+|...|++++|+.++++++...+.  ...++..+|.+
T Consensus        98 a~~~~~-~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~  168 (243)
T 2q7f_A           98 GNVYVV-KEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DTEARFQFGMC  168 (243)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred             HHHHHH-hccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cHHHHHHHHHH
Confidence            999554 599999999999999886532      457889999999999999999999999876643  45688999999


Q ss_pred             HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      |...|++++|+.+++++++..    +....++..+|.++...|+ +++|..++++++++
T Consensus       169 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          169 LANEGMLDEALSQFAAVTEQD----PGHADAFYNAGVTYAYKEN-REKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHccC-HHHHHHHHHHHHcc
Confidence            999999999999999999883    3345689999999999999 99999999999886

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.75  E-value=1.2e-16  Score=159.97  Aligned_cols=209  Identities=11%  Similarity=0.067  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      ....+.+++.+|.++...|++++|+.+|+++++.    .+. ..++..+|.+ +...|++++|+.++++++...+..   
T Consensus       239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~---  309 (537)
T 3fp2_A          239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL----HPT-PNSYIFLALT-LADKENSQEFFKFFQKAVDLNPEY---  309 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCC-HHHHHHHHHH-TCCSSCCHHHHHHHHHHHHHCTTC---
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCC-chHHHHHHHH-HHHhcCHHHHHHHHHHHhccCCCC---
Confidence            3445778999999999999999999999999998    455 6788999999 555599999999999999875432   


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                         ..++..+|.+|...|++++|+.+|++++...+..  ..++..+|.+|...|++++|+.+++++++..+    ....+
T Consensus       310 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~  380 (537)
T 3fp2_A          310 ---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFP----TLPEV  380 (537)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTHH
T ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHH
Confidence               5678999999999999999999999999776543  37789999999999999999999999999843    34567


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH----------DKFTELEQIKTELKSL  260 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~l  260 (480)
                      +..+|.++...|+ +++|+.+|+++++..............+..++.++..+          |++++|..+++++.++
T Consensus       381 ~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          381 PTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence            8899999999999 99999999999999877666555555667889999999          9999999999999875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.74  E-value=9.2e-17  Score=159.82  Aligned_cols=209  Identities=15%  Similarity=0.121  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .+....+++.+|.++...|++++|+.+|+++++.    .+. ..++..+|.+| ...|++++|+.++++++...+..   
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~-~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~---  303 (514)
T 2gw1_A          233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----FPR-VNSYIYMALIM-ADRNDSTEYYNYFDKALKLDSNN---  303 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----CCC-HHHHHHHHHHH-HTSSCCTTGGGHHHHHHTTCTTC---
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----Ccc-HHHHHHHHHHH-HHCCCHHHHHHHHHHHhhcCcCC---
Confidence            3667889999999999999999999999999998    445 78889999994 55599999999999999875432   


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                         ..++..+|.+|...|++++|+.+|++++...+..  ..++..+|.+|...|++++|+.+++++++..+.    ...+
T Consensus       304 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~  374 (514)
T 2gw1_A          304 ---SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE----APEV  374 (514)
T ss_dssp             ---THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT----CSHH
T ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----CHHH
Confidence               3478899999999999999999999999776553  468899999999999999999999999988443    3467


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK---HDKFTELEQIKTELKSL  260 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~l  260 (480)
                      +..+|.++...|+ +++|+.++++++..............++..++.++..   .|++++|..+++++..+
T Consensus       375 ~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          375 PNFFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            8999999999999 9999999999999876554433334578899999999   99999999999998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.74  E-value=1.6e-16  Score=156.31  Aligned_cols=174  Identities=12%  Similarity=0.070  Sum_probs=151.8

Q ss_pred             cCchHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875           70 NFPEAVKTLGEIGDLYELQEKSF-EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC  148 (480)
Q Consensus        70 ~~~~~~~~~~~lg~~y~~~~~~~-~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~  148 (480)
                      ..+..+..+..+|.+ +...|+| ++|+.+|++|+++.+.      ...++..+|.+|..+|++++|+.+|++++...+.
T Consensus        97 ~~~~~a~~~~~lg~~-~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A           97 SAQVEAQALMLKGKA-LNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             TCCCCHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred             cCchhHHHHHHHHHH-HHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            366678889999999 4555999 9999999999998543      2568899999999999999999999999988765


Q ss_pred             ccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh--------CCchHHHH
Q psy875          149 KDLASCYISLAQTYKDN---------KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--------EKPFELVV  211 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~A~  211 (480)
                         ..++.++|.+|..+         |++++|+.+|++++++    .+....++.++|.+|...        |+ +++|+
T Consensus       170 ---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~g~-~~~A~  241 (474)
T 4abn_A          170 ---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGRSWYILGNAYLSLYFNTGQNPKI-SQQAL  241 (474)
T ss_dssp             ---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCHHH-HHHHH
T ss_pred             ---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhhccccch-HHHHH
Confidence               48899999999999         9999999999999999    444567899999999999        99 99999


Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          212 STHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       212 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      .+|++++++...   .+....++..+|.+|..+|++++|..+++++.++.
T Consensus       242 ~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  288 (474)
T 4abn_A          242 SAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD  288 (474)
T ss_dssp             HHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999988210   11567889999999999999999999999998753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.73  E-value=5.5e-16  Score=140.84  Aligned_cols=206  Identities=10%  Similarity=0.016  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .+..+.+++.+|.++...|++++|+.+|+++++.    .+....++..+|.+|.. .|++++|+.++++++.+.+..   
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~---  110 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTY---  110 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC---
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCccc---
Confidence            4567889999999999999999999999999999    56667788999999555 599999999999999985432   


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                         ..++..+|.+|...|++++|+.+|++++...+.....  ...+ .++...|++++|+.++++++...+.+..     
T Consensus       111 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----  179 (275)
T 1xnf_A          111 ---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR--SLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW-----  179 (275)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST-----
T ss_pred             ---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH--HHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH-----
Confidence               4678899999999999999999999999877654422  2222 3446779999999999999987554322     


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ...++.++...++ +++|+..+++++.....  ..+....++..+|.+|..+|++++|..+++++.++
T Consensus       180 ~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          180 GWNIVEFYLGNIS-EQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHHHTTSSC-HHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHhccccc--ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            2347778888888 89999999988765432  12234678899999999999999999999988753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.8e-15  Score=147.28  Aligned_cols=224  Identities=17%  Similarity=0.079  Sum_probs=190.8

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccC--------------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNF--------------PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDL  105 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~  105 (480)
                      ....|..+...|+|++|++.|.++++.. ...              .....++..+|.+|... |++++|+.++.+++..
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEY   84 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence            3445677788899999999999999874 111              12335688999996555 9999999999999999


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          106 ARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      ....++......+...+|.++...|++++|+.++++++.....    ...+.++.++|.+|...|+|++|+.++++++..
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            8887777777788899999999999999999999988765433    445789999999999999999999999999988


Q ss_pred             hhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          182 HAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       182 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      ...  +.+..+.++..+|.+|...|+ |++|..++++++.+.....+++ .....+..++.++...|++++|..++.++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          165 FKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            655  567888999999999999999 9999999999999988887664 567888899999999999999999999999


Q ss_pred             HHHHhhcc
Q psy875          259 SLEEKLDL  266 (480)
Q Consensus       259 ~l~~~~~~  266 (480)
                      +.......
T Consensus       244 ~~~~~~~~  251 (434)
T 4b4t_Q          244 ESYHNLTT  251 (434)
T ss_dssp             HHHHHTTT
T ss_pred             HHhhhhhh
Confidence            87776554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.72  E-value=5.5e-16  Score=136.97  Aligned_cols=157  Identities=13%  Similarity=0.140  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      ..+..+|.+|+.. |+|++|+.+|++++.+.+.. +    ..++.++|.+|..+|++++|+.+|++++...  |....++
T Consensus         8 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~-~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~   79 (228)
T 4i17_A            8 NQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQ-D----SVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAY   79 (228)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTC-C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHH
T ss_pred             HHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCC-C----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHH
Confidence            6788999995555 99999999999999986511 1    2567779999999999999999999999766  4566889


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhcCc---HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH--H
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL--I  230 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~  230 (480)
                      ..+|.+|..+|++++|+.++++++++.+.+.   ...+.++..+|.++...|+ +++|+.+|++++++      .+.  .
T Consensus        80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~------~p~~~~  152 (228)
T 4i17_A           80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDV------TSKKWK  152 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTS------SCHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhc------CCCccc
Confidence            9999999999999999999999999866543   2245789999999999999 99999999999876      455  6


Q ss_pred             HHHHHHHHHHHHHcCCh
Q psy875          231 RTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       231 ~~~~~~l~~~~~~~g~~  247 (480)
                      ..++..+|.+|..+|+.
T Consensus       153 ~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          153 TDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            78899999999998887

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.1e-16  Score=159.39  Aligned_cols=204  Identities=16%  Similarity=0.165  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ..++..+|.++...|++++|+.+++++++.    .+....++..+|.+|.. .|++++|+.++++++...+..      .
T Consensus       270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~------~  338 (514)
T 2gw1_A          270 VNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPEN------I  338 (514)
T ss_dssp             HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----CTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSC------S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----CcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhh------H
Confidence            788999999999999999999999999988    44455678899999555 499999999999999875532      3


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcH--HHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP--EAVKTLG  194 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~  194 (480)
                      .++..+|.+|...|++++|+.+|++++...+..  ..++..+|.+|...|++++|+.+++++++..+.+..  ....++.
T Consensus       339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  416 (514)
T 2gw1_A          339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV  416 (514)
T ss_dssp             HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence            478899999999999999999999998766543  467899999999999999999999999998555321  1134889


Q ss_pred             HHHHHHHH---hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          195 EIGDLYEL---QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       195 ~l~~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .+|.++..   .|+ +++|+.++++++..      .+....++..++.++...|++++|..+++++.++
T Consensus       417 ~l~~~~~~~~~~~~-~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          417 GKATLLTRNPTVEN-FIEATNLLEKASKL------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHHHTSCCTTH-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcCC-HHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            99999999   999 99999999999987      2334567889999999999999999999999875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=4.4e-16  Score=153.42  Aligned_cols=243  Identities=13%  Similarity=0.039  Sum_probs=140.5

Q ss_pred             hhHHHhhccchhhhhhhHHHH-------hhhhhhh---hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----h
Q psy875            3 FKIALSRGIGLSDSLDSACTE-------LHTVLSS---DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----A   68 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~-------~~~~~~~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~   68 (480)
                      +.+|..+|.+ +...++...+       +.+....   ......+.+|.++|.+|..+|++++|+.++++++++.    .
T Consensus        51 a~~yn~Lg~~-~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           51 ATMCNLLAYL-KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4566667776 5555542222       2222211   1123456789999999999999999999999999985    2


Q ss_pred             ccCchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH---HHhcCChHHHHHHHHHHhc
Q psy875           69 RNFPEAVKTLGEIGDLYEL-QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKL---YKKHDNLDSACSELHTVLS  144 (480)
Q Consensus        69 ~~~~~~~~~~~~lg~~y~~-~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~---y~~~~~~~~A~~~~~~~l~  144 (480)
                      ......+.++.++|.++.. ..++|++|+.+|++|+++.+..      ..++..+|.+   +...+++++|++.|++++.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~  203 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR  203 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            2234456777888876332 2368999999999999885432      2233334433   2334556666666666665


Q ss_pred             ccccccHHHHHHHHHHHH----HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          145 SDLCKDLASCYISLAQTY----KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       145 ~~~~~~~~~~~~~la~~y----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ..+..  ..++.++|..+    ...+++++|+.++++++..    .+....++.++|.+|...|+ +++|+..++++++.
T Consensus       204 l~p~~--~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~  276 (472)
T 4g1t_A          204 LNPDN--QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEY  276 (472)
T ss_dssp             HCSSC--HHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             cCCcc--hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHh
Confidence            44332  22333333322    2234444555555555544    22223444455555555555 55555555555432


Q ss_pred             HHHcC-----------------------------------------------CcHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy875          221 ARQNK-----------------------------------------------DDKLIRTVMRSMKKLYKKHDKFTELEQI  253 (480)
Q Consensus       221 ~~~~~-----------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~  253 (480)
                      .....                                               ..+....++..+|.+|..+|++++|..+
T Consensus       277 ~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~  356 (472)
T 4g1t_A          277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY  356 (472)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHH
Confidence            11000                                               0122233456789999999999999999


Q ss_pred             HHHHHH
Q psy875          254 KTELKS  259 (480)
Q Consensus       254 ~~~~~~  259 (480)
                      ++++.+
T Consensus       357 ~~kaL~  362 (472)
T 4g1t_A          357 FQKEFS  362 (472)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.71  E-value=6.5e-16  Score=138.56  Aligned_cols=170  Identities=15%  Similarity=0.088  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ....+++.+|.++...|++++|+++++++++.    .+....++..+|.+|... |++++|+.++++++.    .+..+.
T Consensus        69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~----~~~~~~  139 (252)
T 2ho1_A           69 SSADAHAALAVVFQTEMEPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQ-KRYEEAYQRLLEASQ----DTLYPE  139 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTT----CTTCTT
T ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHH-hHHHHHHHHHHHHHh----CccCcc
Confidence            34678999999999999999999999999998    455567889999995554 999999999999987    122344


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...++..+|.+|...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+.+++++++..+    .....+.
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~  213 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--QPSVALEMADLLYKEREYVPARQYYDLFAQGGG----QNARSLL  213 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----CCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHH
Confidence            5678899999999999999999999999876643  457889999999999999999999999998733    3356788


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .++.++...|+ +++|..+++++++.
T Consensus       214 ~~~~~~~~~g~-~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          214 LGIRLAKVFED-RDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccC-HHHHHHHHHHHHHH
Confidence            99999999999 99999999999876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.70  E-value=1.6e-15  Score=125.65  Aligned_cols=154  Identities=15%  Similarity=0.162  Sum_probs=137.9

Q ss_pred             CCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-
Q psy875          110 KDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-  184 (480)
Q Consensus       110 ~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-  184 (480)
                      +++...+.++..+|.+|...|++++|+.++++++...+.    ...+.++..+|.+|..+|++++|+.++++++++... 
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            456677889999999999999999999999998876543    233578999999999999999999999999998655 


Q ss_pred             -CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          185 -NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       185 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                       +++....++.++|.++...|+ +++|+.++++++.+.+..++......++..++.++..+|++++|..+++++.++..+
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             556668899999999999999 999999999999999999998899999999999999999999999999999998766


Q ss_pred             h
Q psy875          264 L  264 (480)
Q Consensus       264 ~  264 (480)
                      +
T Consensus       162 ~  162 (164)
T 3ro3_A          162 V  162 (164)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=2e-15  Score=138.50  Aligned_cols=201  Identities=15%  Similarity=0.087  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ...++..++..+...+++++|++.+++.+.. . ..|.....+..+|.+|.. .|++++|+..+++        ++   .
T Consensus        64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~-~-~~P~~~~~~~~la~~~~~-~g~~~~Al~~l~~--------~~---~  129 (291)
T 3mkr_A           64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR-S-VDVTNTTFLLMAASIYFY-DQNPDAALRTLHQ--------GD---S  129 (291)
T ss_dssp             HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS-C-CCCSCHHHHHHHHHHHHH-TTCHHHHHHHHTT--------CC---S
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-c-cCCCCHHHHHHHHHHHHH-CCCHHHHHHHHhC--------CC---C
Confidence            4578888999999999999999999988764 1 135556678899999554 4999999999987        11   2


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      ..++..+|.+|..+|++++|+..|++++...+..........+..++...|++++|+..|+++++..    |..+.++.+
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----p~~~~~~~~  205 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----SPTLLLLNG  205 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----CCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----CCcHHHHHH
Confidence            4578899999999999999999999998876554322222222344456699999999999999883    344678999


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE-LEQIKTELKSLE  261 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~l~  261 (480)
                      +|.++..+|+ +++|+..|++++..      .+....++.+++.++..+|++.+ +.++++++.++.
T Consensus       206 la~~~~~~g~-~~eA~~~l~~al~~------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          206 QAACHMAQGR-WEAAEGVLQEALDK------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            9999999999 99999999999987      45556678999999999999976 578888887653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.70  E-value=9.2e-16  Score=127.13  Aligned_cols=151  Identities=20%  Similarity=0.243  Sum_probs=103.3

Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc---
Q psy875           72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC---  148 (480)
Q Consensus        72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---  148 (480)
                      ...+.++..+|.+|... |++++|+.++++++.+.+..++....+.++.++|.+|...|++++|+.++++++...+.   
T Consensus         6 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            34556666777774444 77777777777777776666666666667777777777777777777777766654332   


Q ss_pred             -ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          149 -KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       149 -~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                       +....++.++|.++..+|++++|+.++++++++...  +++....++..+|.++...|+ +++|..++++++++.++.
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHh
Confidence             223556777777777777777777777777776543  345566777777888888887 888888888877766543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.69  E-value=6.7e-16  Score=131.05  Aligned_cols=170  Identities=18%  Similarity=0.136  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ..+.+++.+|.++...|++++|+.+++++++.    .+....++..+|.+|... |++++|+.++++++...+.      
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~------   74 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKT-GAVDRGTELLERSLADAPD------   74 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT------
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC------
Confidence            45678899999999999999999999999877    445567888999995554 9999999999999987432      


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...++..+|.++...|++++|+.++++++...+.  ...++..+|.+|...|++++|+.+++++++..    +....++.
T Consensus        75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~  148 (186)
T 3as5_A           75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI--NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR----PNEGKVHR  148 (186)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH--hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----ccchHHHH
Confidence            2467889999999999999999999999876543  45788999999999999999999999999884    33367889


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      .+|.++...|+ +++|..+++++++...
T Consensus       149 ~la~~~~~~~~-~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          149 AIAFSYEQMGR-HEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHcCC
Confidence            99999999999 9999999999998754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.69  E-value=1.1e-16  Score=131.42  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=120.9

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q psy875           42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS  121 (480)
Q Consensus        42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~  121 (480)
                      .||.++..+|++++|+..+++++..    .+.....++.+|.+|+.. |+|++|+.+|++++++.+..      ..++.+
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~p~~------~~a~~~   70 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINVQERD------PKAHRF   70 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence            4799999999999999999999777    667777888999996555 99999999999999985432      578899


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH-HHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          122 IKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY-FNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       122 l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                      +|.+|..+|++++|+.+|++++...|  ....++.++|.+|..+|++++|.++ +++++++    .|..+.++...+.++
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l----~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL----FPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH----STTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh----CcCCHHHHHHHHHHH
Confidence            99999999999999999999997765  4457899999999999999887665 5899999    444456788888888


Q ss_pred             HHhCC
Q psy875          201 ELQEK  205 (480)
Q Consensus       201 ~~~~~  205 (480)
                      ..+|+
T Consensus       145 ~~~G~  149 (150)
T 4ga2_A          145 DCEGE  149 (150)
T ss_dssp             HTCCC
T ss_pred             HHhCc
Confidence            88776

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.69  E-value=4.7e-15  Score=128.12  Aligned_cols=171  Identities=14%  Similarity=0.115  Sum_probs=146.9

Q ss_pred             hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc----cccHHHHHHHHHHHHHh
Q psy875           89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL----CKDLASCYISLAQTYKD  164 (480)
Q Consensus        89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~~la~~y~~  164 (480)
                      .|++++|+..++...      +++.....++..+|.+|...|++++|+.++++++....    .+..+.++.++|.+|..
T Consensus         5 ~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   78 (203)
T 3gw4_A            5 AHDYALAERQAQALL------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM   78 (203)
T ss_dssp             --CHHHHHHHHHHHH------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            389999988554332      13445678999999999999999999999999886433    24557889999999999


Q ss_pred             hccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875          165 NKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY  241 (480)
Q Consensus       165 ~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  241 (480)
                      +|++++|+.++++++++...   ++...+.++.++|.++..+|+ +++|+.++++++.+.+..++......++..++.++
T Consensus        79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A           79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA  157 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            99999999999999998655   233678899999999999999 99999999999999999999888899999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          242 KKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       242 ~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      ..+|++++|..+++++.++....+.
T Consensus       158 ~~~g~~~~A~~~~~~al~~~~~~~~  182 (203)
T 3gw4_A          158 QQEKNLLEAQQHWLRARDIFAELED  182 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999998877653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.68  E-value=7.2e-15  Score=129.48  Aligned_cols=176  Identities=11%  Similarity=0.041  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +..++.+|..+...|+|++|+..|+++++. .+..+....++..+|.+|+.. |++++|+..|+++++..+...   ...
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~P~~~---~~~   78 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHP---NID   78 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCT---THH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCC---cHH
Confidence            457899999999999999999999999998 555555667889999996665 999999999999998876543   334


Q ss_pred             HHHHHHHHHHHh------------------cCChHHHHHHHHHHhcccccccHH---------------HHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKK------------------HDNLDSACSELHTVLSSDLCKDLA---------------SCYISLAQTYK  163 (480)
Q Consensus       117 ~~~~~l~~~y~~------------------~~~~~~A~~~~~~~l~~~~~~~~~---------------~~~~~la~~y~  163 (480)
                      .++..+|.+|..                  .|++++|+..|++++...|....+               .....+|.+|.
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~  158 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT  158 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777765                  689999999999999887764322               22357899999


Q ss_pred             hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      ..|++++|+..|+++++..+++ +....++..+|.++..+|+ +++|+..++++..
T Consensus       159 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~l~~~~~~~g~-~~~A~~~~~~l~~  212 (225)
T 2yhc_A          159 ERGAWVAVVNRVEGMLRDYPDT-QATRDALPLMENAYRQMQM-NAQAEKVAKIIAA  212 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHHCcCC-CccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHh
Confidence            9999999999999999986653 4556889999999999999 9999999987654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.67  E-value=1.4e-16  Score=149.70  Aligned_cols=151  Identities=19%  Similarity=0.113  Sum_probs=99.4

Q ss_pred             CCccchhhhccCCCcCCCCc--CCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHH
Q psy875          314 RAPRSHFLIKRNDKDSNLNL--YNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHV  391 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~  391 (480)
                      |.......+...+.++|..+  ..+.++||+|+..|+.++|++|+++|++++..+                ..|.||||+
T Consensus       211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d----------------~~G~TpLh~  274 (368)
T 3jue_A          211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD----------------SAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC----------------CCCCCHHHH
Confidence            44444444445667888776  788999999999999999999999999998654                349999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-ccCCCCCCcHHHHHHHcCC--HHH
Q psy875          392 AAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND-KVQDSAGWLPLHEAANHGH--TDI  468 (480)
Q Consensus       392 a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~tpl~~A~~~~~--~~~  468 (480)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+..+..... ...+..+.|+++++.....  .+-
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~  354 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDD  354 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999999999999999999987633221 1235578899998876543  344


Q ss_pred             HHHHHHcCCCCC
Q psy875          469 VQALVSAGAEVS  480 (480)
Q Consensus       469 ~~~Ll~~ga~~~  480 (480)
                      .+.|...+.+++
T Consensus       355 ~ekl~r~~~~~~  366 (368)
T 3jue_A          355 PEKLSRRSHDLH  366 (368)
T ss_dssp             ------------
T ss_pred             HHHHHhcCCCcC
Confidence            567777776653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.67  E-value=3e-16  Score=142.58  Aligned_cols=99  Identities=19%  Similarity=0.159  Sum_probs=91.2

Q ss_pred             CCcCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy875          331 LNLYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ  407 (480)
Q Consensus       331 ~~~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~  407 (480)
                      ..+..+.++||.|+..   |+.+++++|+++|++++..+.                .|.||||+|+..|+.+++++|+++
T Consensus       164 ~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~----------------~g~TpLh~A~~~g~~~~v~~Ll~~  227 (278)
T 1dcq_A          164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----------------KGSTALHYCCLTDNAECLKLLLRG  227 (278)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC----------------CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3467789999999999   999999999999999987643                499999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          408 GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN  445 (480)
Q Consensus       408 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  445 (480)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       228 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          228 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999987543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.67  E-value=3.5e-15  Score=126.57  Aligned_cols=172  Identities=17%  Similarity=0.139  Sum_probs=146.3

Q ss_pred             CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875           71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus        71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      .......+..+|.+|... |++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+  .
T Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~   74 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKA-GRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGTELLERSLADAP--D   74 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHH-TCHHHHHHHHTTTCCTTSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred             cchhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C
Confidence            455677888999995555 99999999999998764322      56788999999999999999999999987654  3


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHH
Q psy875          151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLI  230 (480)
Q Consensus       151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  230 (480)
                      ...++..+|.+|...|++++|+.+++++++..    +....++..+|.++...|+ +++|+.++++++...      +..
T Consensus        75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~------~~~  143 (186)
T 3as5_A           75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLR------PNE  143 (186)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------TTC
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcC------ccc
Confidence            45788999999999999999999999999983    3345788999999999999 999999999998772      223


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy875          231 RTVMRSMKKLYKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       231 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      ..++..++.++..+|++++|..+++++.++..
T Consensus       144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            57888999999999999999999999987653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.67  E-value=9.9e-15  Score=128.05  Aligned_cols=173  Identities=13%  Similarity=0.099  Sum_probs=147.5

Q ss_pred             cCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc
Q psy875           70 NFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK  149 (480)
Q Consensus        70 ~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~  149 (480)
                      ..+....++..+|.+|... |++++|+.++++++...+..      ..++..+|.+|...|++++|+.+|++++...+. 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-   74 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRG-QDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-   74 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             CCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-
Confidence            3566778899999995555 99999999999999875432      567889999999999999999999999876643 


Q ss_pred             cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          150 DLASCYISLAQTYKDN-KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                       ...++..+|.+|... |++++|+.+++++++  ....+....++..+|.++...|+ +++|+.+++++++..      +
T Consensus        75 -~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~------~  144 (225)
T 2vq2_A           75 -SAEINNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAAQ------P  144 (225)
T ss_dssp             -CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS------T
T ss_pred             -ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC------C
Confidence             457889999999999 999999999999998  22345567889999999999999 999999999998762      2


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          229 LIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      ....++..++.++...|++++|..+++++.++
T Consensus       145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            23567889999999999999999999998774

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.67  E-value=9.7e-15  Score=126.95  Aligned_cols=165  Identities=12%  Similarity=0.045  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHH----------------HHHHHHHhhccHHHHHHHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE----------------IGDLYELQEKSFEIVQSTHE  100 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------lg~~y~~~~~~~~~A~~~~~  100 (480)
                      +..++..|..+...|++++|+.+|+++++.    .|....++..                +|.+|... |++++|+.+|+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~   78 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence            456788999999999999999999999999    6777777777                99995554 99999999999


Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc--HHHHHHHHHHH
Q psy875          101 KALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ--YNLAVDYFNKE  178 (480)
Q Consensus       101 kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~--~~~A~~~~~~a  178 (480)
                      +++++.+..      ..++.++|.+|..+|++++|+.+|++++...|.  ...++.++|.+|..+|+  ...+...++++
T Consensus        79 ~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  150 (208)
T 3urz_A           79 ELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLTAEQEKKKLETDYKKL  150 (208)
T ss_dssp             HHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999985432      567899999999999999999999999987754  45789999999987764  45566777666


Q ss_pred             HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +..    . .....++.+|.++...|+ |++|+.+|++++++
T Consensus       151 ~~~----~-~~~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l  186 (208)
T 3urz_A          151 SSP----T-KMQYARYRDGLSKLFTTR-YEKARNSLQKVILR  186 (208)
T ss_dssp             -CC----C-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHTTT
T ss_pred             hCC----C-chhHHHHHHHHHHHHccC-HHHHHHHHHHHHHh
Confidence            532    2 233467788999999999 99999999999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.66  E-value=8.1e-15  Score=132.33  Aligned_cols=181  Identities=13%  Similarity=0.097  Sum_probs=150.6

Q ss_pred             CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-c
Q psy875           71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-K  149 (480)
Q Consensus        71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~  149 (480)
                      .+.....++.+|..++.. |+|++|+..|++++...+.   .+....++..+|.+|..+|++++|+.+|++++...|. +
T Consensus        11 ~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence            345567788999995555 9999999999999987543   3445678999999999999999999999999988774 4


Q ss_pred             cHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHhhhhcCcHHHHHH--------------HHHHHHHHHHhCCch
Q psy875          150 DLASCYISLAQTYKD--------NKQYNLAVDYFNKELRLHARNFPEAVKT--------------LGEIGDLYELQEKPF  207 (480)
Q Consensus       150 ~~~~~~~~la~~y~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~  207 (480)
                      ....+++.+|.+|..        +|++++|+.+|+++++..+++. ....+              ++.+|.+|...|+ |
T Consensus        87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~  164 (261)
T 3qky_A           87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LVDDATQKIRELRAKLARKQYEAARLYERREL-Y  164 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-H
T ss_pred             hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-H
Confidence            567899999999999        9999999999999999866532 22233              3889999999999 9


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHH
Q psy875          208 ELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH----------DKFTELEQIKTELKSL  260 (480)
Q Consensus       208 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~l  260 (480)
                      ++|+..|+++++..   ++.+....++..++.+|..+          |++++|...++++.+.
T Consensus       165 ~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          165 EAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            99999999998763   33444677889999999977          8999999999988764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=4.5e-16  Score=120.29  Aligned_cols=90  Identities=27%  Similarity=0.381  Sum_probs=81.6

Q ss_pred             CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy875          332 NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPV  411 (480)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~  411 (480)
                      .+..+.++++.|+..|+.+++++|+++|++++..+                ..|.||||+|+..|+.+++++|+++|+++
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d----------------~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~   83 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD----------------KNGSTPLHLAARNGHLEVVKLLLEAGADV   83 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccC----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            34567788999999999999999999999988654                34999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHH
Q psy875          412 KVQDSAGWLPLHEAANHGHTDIVQAL  437 (480)
Q Consensus       412 ~~~~~~g~t~l~~a~~~~~~~~~~~L  437 (480)
                      +.+|..|+||||+|+..|+.+++++|
T Consensus        84 ~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           84 XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccCCCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999986

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=5.6e-16  Score=127.15  Aligned_cols=147  Identities=14%  Similarity=0.095  Sum_probs=119.2

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHH
Q psy875           80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLA  159 (480)
Q Consensus        80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la  159 (480)
                      .||.+ +...|++++|+..+++++..      .+.....+..+|.+|..+|+|++|+.+|++++...|  ....++.++|
T Consensus         2 ~LG~~-~~~~~~~e~ai~~~~~a~~~------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg   72 (150)
T 4ga2_A            2 PLGSM-RRSKADVERYIASVQGSTPS------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLG   72 (150)
T ss_dssp             ------CCCHHHHHHHHHHHHHHSCS------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred             HhHHH-HHHcChHHHHHHHHHHhccc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence            46888 44559999999999998865      334456778999999999999999999999998775  4458899999


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875          160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVST-HEKALDLARQNKDDKLIRTVMRSMK  238 (480)
Q Consensus       160 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~l~  238 (480)
                      .+|..+|++++|+.+|++++++    .|....++.++|.++...|+ +++|... +++|+++      .|....++..++
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l------~P~~~~~~~l~~  141 (150)
T 4ga2_A           73 LLYELEENTDKAVECYRRSVEL----NPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKL------FPGSPAVYKLKE  141 (150)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHH------STTCHHHHHHHH
T ss_pred             HHHHHcCchHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHh------CcCCHHHHHHHH
Confidence            9999999999999999999999    45557789999999999999 9877665 6899987      344456777888


Q ss_pred             HHHHHcCC
Q psy875          239 KLYKKHDK  246 (480)
Q Consensus       239 ~~~~~~g~  246 (480)
                      .++..+|+
T Consensus       142 ~ll~~~G~  149 (150)
T 4ga2_A          142 QLLDCEGE  149 (150)
T ss_dssp             HHHHTCCC
T ss_pred             HHHHHhCc
Confidence            88888875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.65  E-value=1.4e-15  Score=156.28  Aligned_cols=196  Identities=10%  Similarity=-0.050  Sum_probs=157.2

Q ss_pred             hccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q psy875           48 KDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIK  123 (480)
Q Consensus        48 ~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~  123 (480)
                      ...|++++|++.++++++..    ....+....++..+|.+|.. .|++++|+..|+++++..+..      ..++.++|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~------~~a~~~lg  474 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAERVGWR------WRLVWYRA  474 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCC------HHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhccCcch------HHHHHHHH
Confidence            67899999999999999210    11256667788999999544 599999999999999886533      56889999


Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ  203 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~  203 (480)
                      .+|..+|++++|+..|++++...+..  ..++.++|.+|..+|++++ +.+|++++++    .+....+++++|.++..+
T Consensus       475 ~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~~~g~~~~-~~~~~~al~~----~P~~~~a~~~lg~~~~~~  547 (681)
T 2pzi_A          475 VAELLTGDYDSATKHFTEVLDTFPGE--LAPKLALAATAELAGNTDE-HKFYQTVWST----NDGVISAAFGLARARSAE  547 (681)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHH-HHHHHHHHHh----CCchHHHHHHHHHHHHHc
Confidence            99999999999999999999877654  4788999999999999999 9999999998    455567899999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHhh
Q psy875          204 EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTEL-EQIKTELKSLEEKL  264 (480)
Q Consensus       204 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~l~~~~  264 (480)
                      |+ +++|+..|++++++      .+....++..++.++...++.+++ ..-++++.+.-..+
T Consensus       548 g~-~~~A~~~~~~al~l------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          548 GD-RVGAVRTLDEVPPT------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             TC-HHHHHHHHHTSCTT------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             CC-HHHHHHHHHhhccc------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            99 99999999999876      556678889999999887776665 55566665544444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.63  E-value=1e-13  Score=122.07  Aligned_cols=177  Identities=13%  Similarity=0.073  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-HHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-LAS  153 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~~~  153 (480)
                      ...++.+|..++.. |+|++|+..|++++...+.   .+....++..+|.+|..+|++++|+..|++++...|... ...
T Consensus         4 ~~~~~~~a~~~~~~-g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~   79 (225)
T 2yhc_A            4 PNEIYATAQQKLQD-GNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY   79 (225)
T ss_dssp             HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence            34577889995555 9999999999999987553   333456889999999999999999999999998877643 456


Q ss_pred             HHHHHHHHHHh------------------hccHHHHHHHHHHHHhhhhcCcHH-------------HHHHHHHHHHHHHH
Q psy875          154 CYISLAQTYKD------------------NKQYNLAVDYFNKELRLHARNFPE-------------AVKTLGEIGDLYEL  202 (480)
Q Consensus       154 ~~~~la~~y~~------------------~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~l~~~~~~  202 (480)
                      +++.+|.+|..                  .|++++|+..|+++++..++....             .......+|.+|+.
T Consensus        80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~  159 (225)
T 2yhc_A           80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE  159 (225)
T ss_dssp             HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888988875                  689999999999999986653211             11233678999999


Q ss_pred             hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          203 QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .|+ +++|+..|+++++..   ++.+....++..++.+|.++|++++|..+++.+..
T Consensus       160 ~~~-~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          160 RGA-WVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HTC-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCc-HHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            999 999999999998763   44566678999999999999999999999986654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=6.2e-15  Score=133.80  Aligned_cols=226  Identities=10%  Similarity=0.001  Sum_probs=161.9

Q ss_pred             hhHHHhhccchhhhhhhHHHHhhh-hhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q psy875            3 FKIALSRGIGLSDSLDSACTELHT-VLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI   81 (480)
Q Consensus         3 ~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l   81 (480)
                      ..+++.+|.. +...++....+.. .+.....+....++..+|.++...|++++|+.+|++++++    .+....++..+
T Consensus        43 ~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l  117 (275)
T 1xnf_A           43 AQLLYERGVL-YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNR  117 (275)
T ss_dssp             HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTHHHHHH
T ss_pred             HHHHHHHHHH-HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CccccHHHHHH
Confidence            3456666666 4444442222111 1111222334678999999999999999999999999999    55556788999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH
Q psy875           82 GDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT  161 (480)
Q Consensus        82 g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~  161 (480)
                      |.+|.. .|++++|+.++++++.+.+...      .....+ .++...|++++|+.++++++...+....   ...++.+
T Consensus       118 a~~~~~-~g~~~~A~~~~~~a~~~~~~~~------~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~  186 (275)
T 1xnf_A          118 GIALYY-GGRDKLAQDDLLAFYQDDPNDP------FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW---GWNIVEF  186 (275)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCTTCH------HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST---HHHHHHH
T ss_pred             HHHHHH-hccHHHHHHHHHHHHHhCCCCh------HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH---HHHHHHH
Confidence            999555 5999999999999998755331      111222 3346679999999999988876654432   2458888


Q ss_pred             HHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy875          162 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY  241 (480)
Q Consensus       162 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  241 (480)
                      +...+++++|+..++++++......+....++..+|.++...|+ +++|+.+|++++.+.  ..+.       ...+.++
T Consensus       187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~--p~~~-------~~~~~~~  256 (275)
T 1xnf_A          187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-LDSATALFKLAVANN--VHNF-------VEHRYAL  256 (275)
T ss_dssp             HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC--CTTC-------HHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCC--chhH-------HHHHHHH
Confidence            89999999999999999887554444557899999999999999 999999999998762  1121       2235677


Q ss_pred             HHcCChHHHHHHH
Q psy875          242 KKHDKFTELEQIK  254 (480)
Q Consensus       242 ~~~g~~~~A~~~~  254 (480)
                      ..+|++++|+..+
T Consensus       257 ~~l~~~~~a~~~~  269 (275)
T 1xnf_A          257 LELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHhhHHHH
Confidence            7888888887766

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.60  E-value=3.9e-14  Score=123.09  Aligned_cols=165  Identities=12%  Similarity=0.027  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHH----------------HHHHHHhcCChHHHHHHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRS----------------IKKLYKKHDNLDSACSEL  139 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~----------------l~~~y~~~~~~~~A~~~~  139 (480)
                      ..+...|..+. ..|++++|+.+|++++.+.+.      ...++..                +|.+|..+|++++|+.+|
T Consensus         5 ~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            5 DEMLQKVSAAI-EAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44567788844 459999999999999987442      2345555                999999999999999999


Q ss_pred             HHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Q psy875          140 HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-PFELVVSTHEKAL  218 (480)
Q Consensus       140 ~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~al  218 (480)
                      ++++...|.  ...++.++|.+|...|++++|+.+|++++++    .|....++.++|.+|+..|+ ..+.+...+++++
T Consensus        78 ~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A           78 KELLQKAPN--NVDCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             HHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            999987754  4588999999999999999999999999999    45557889999999987765 0344555555543


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          219 DLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                             .+.....++..+|.++...|++++|..++++++++
T Consensus       152 -------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          152 -------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             -------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence                   22233446677899999999999999999998764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.4e-13  Score=133.76  Aligned_cols=193  Identities=9%  Similarity=0.034  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA--RNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK  110 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~  110 (480)
                      .+....++..+|.+|...|++++|++++.+++++..  +.......+...+|.+ +...|++++|+.++++++.+.....
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~  129 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKF-EQVPDSLDDQIFVCEKSIEFAKREK  129 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHH-CSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhC
Confidence            345567899999999999999999999999999851  1222234566778888 5555999999999999999999888


Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--  184 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--  184 (480)
                      +....+.++.++|.+|...|+|++|+.++++++...    ..+....++..+|.+|..+|+|++|..++++++.+...  
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence            888888999999999999999999999999876432    23566889999999999999999999999999988654  


Q ss_pred             -CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc
Q psy875          185 -NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD  227 (480)
Q Consensus       185 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  227 (480)
                       .+...+..+..+|.++...++ |++|..+|.++++........
T Consensus       210 ~~~~~~~~~~~~~g~~~~~~~~-y~~A~~~~~~a~~~~~~~~~~  252 (434)
T 4b4t_Q          210 CPTQTVAELDLMSGILHCEDKD-YKTAFSYFFESFESYHNLTTH  252 (434)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHTTTS
T ss_pred             CchHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhhhhh
Confidence             234567888999999999999 999999999999988776543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.59  E-value=4.8e-14  Score=111.86  Aligned_cols=115  Identities=24%  Similarity=0.292  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCC-
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNK-  110 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~-  110 (480)
                      ...+.+.++.++|..++.+|+|++|+++|++|+++    .|....+|.++|.+|.. +|+|++|+.++++|+++.+... 
T Consensus         3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccch
Confidence            34567889999999999999999999999999999    67778899999999555 5999999999999999887654 


Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL  151 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~  151 (480)
                      .....+.++.++|.+|..+|++++|+++|++++...+++..
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~  118 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL  118 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence            34667889999999999999999999999999987665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=7.7e-14  Score=129.19  Aligned_cols=210  Identities=10%  Similarity=0.084  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHHHhc-------cccH-------HHHHHHHHHHHH-HhhccCchHHHHHHHHHHHHHHhhccHHHHHH
Q psy875           33 CKDLASCYISLAQTYKD-------NKQY-------NLAVDYFNKELR-LHARNFPEAVKTLGEIGDLYELQEKSFEIVQS   97 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~   97 (480)
                      .+....+++.+|.++..       .|++       ++|+..|++|++ +    .+....+|..+|.+ +...|++++|+.
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~----~p~~~~~~~~~~~~-~~~~~~~~~A~~  120 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYADY-EESRMKYEKVHS  120 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT----TTTCHHHHHHHHHH-HHHTTCHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh----CcccHHHHHHHHHH-HHhcCCHHHHHH
Confidence            34456677888877763       4665       999999999998 6    55666788999999 555599999999


Q ss_pred             HHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHH-hhccHHHHHHHHH
Q psy875           98 THEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYK-DNKQYNLAVDYFN  176 (480)
Q Consensus        98 ~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~-~~~~~~~A~~~~~  176 (480)
                      .|++++++.+..   ..  .++.++|.++...|++++|...|++++...+..  ..++...+.+.. ..|++++|+..|+
T Consensus       121 ~~~~al~~~p~~---~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~  193 (308)
T 2ond_A          121 IYNRLLAIEDID---PT--LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFE  193 (308)
T ss_dssp             HHHHHHTSSSSC---TH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHhccccC---cc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999864322   11  278899999999999999999999999876543  345555555543 3799999999999


Q ss_pred             HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                      ++++..+    ....++..+|.++...|+ +++|...|++++....  -.+.....++..++.+....|++++|...+++
T Consensus       194 ~al~~~p----~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          194 LGLKKYG----DIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHhCC----CcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999844    346788999999999999 9999999999986410  01112456777888999999999999999998


Q ss_pred             HHHHH
Q psy875          257 LKSLE  261 (480)
Q Consensus       257 ~~~l~  261 (480)
                      +.++.
T Consensus       267 a~~~~  271 (308)
T 2ond_A          267 RFTAF  271 (308)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.58  E-value=9.2e-14  Score=121.07  Aligned_cols=163  Identities=13%  Similarity=0.108  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHhhhcCCC
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK----SFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~----~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .+.+++.+|.+|...+++++|+.+|+++.+.      ....+++++|.+| .. +    ++++|+.+|++|.+..     
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y-~~-~g~~~~~~~A~~~~~~A~~~g-----   83 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLK-IR-NPQQADYPQARQLAEKAVEAG-----   83 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHT-TS-STTSCCHHHHHHHHHHHHHTT-----
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHH-Hc-CCCCCCHHHHHHHHHHHHHCC-----
Confidence            3578999999999999999999999999876      3456788999994 45 6    8999999999996531     


Q ss_pred             chHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhhh
Q psy875          112 DKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~  183 (480)
                         ...++.++|.+|..    .+++++|+.+|+++....+......++++||.+|..    .+++++|+.+|+++.+. .
T Consensus        84 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~  159 (212)
T 3rjv_A           84 ---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S  159 (212)
T ss_dssp             ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred             ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence               25678899999998    899999999999999766533457889999999999    89999999999999887 2


Q ss_pred             cCcHHHHHHHHHHHHHHHHh-C-----CchHHHHHHHHHHHHH
Q psy875          184 RNFPEAVKTLGEIGDLYELQ-E-----KPFELVVSTHEKALDL  220 (480)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~-~-----~~~~~A~~~~~~al~~  220 (480)
                      .+    ..++++||.+|... |     + +++|+.+|++|.+.
T Consensus       160 ~~----~~a~~~Lg~~y~~g~gg~~~~d-~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          160 RT----GYAEYWAGMMFQQGEKGFIEPN-KQKALHWLNVSCLE  197 (212)
T ss_dssp             CT----THHHHHHHHHHHHCBTTTBCCC-HHHHHHHHHHHHHH
T ss_pred             CC----HHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHc
Confidence            22    23788999999874 2     6 99999999999876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.57  E-value=1.7e-13  Score=119.33  Aligned_cols=178  Identities=10%  Similarity=0.021  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC---
Q psy875           54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD---  130 (480)
Q Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~---  130 (480)
                      .+|+++|+++.+.      ....+++.+|.+|... +++++|+.+|++|.+..        ...++.++|.+|.. +   
T Consensus         3 ~eA~~~~~~aa~~------g~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~   66 (212)
T 3rjv_A            3 TEPGSQYQQQAEA------GDRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQ   66 (212)
T ss_dssp             -CTTHHHHHHHHT------TCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTS
T ss_pred             chHHHHHHHHHHC------CCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCC
Confidence            4578889988875      3466788999996665 99999999999998642        25678899999998 7   


Q ss_pred             -ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH---
Q psy875          131 -NLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL---  202 (480)
Q Consensus       131 -~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~---  202 (480)
                       ++++|+.+|+++...    ....++++||.+|..    .+++++|+.+|+++.+.-  +....+.++++||.+|..   
T Consensus        67 ~~~~~A~~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g  140 (212)
T 3rjv_A           67 ADYPQARQLAEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVH  140 (212)
T ss_dssp             CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCC
Confidence             999999999999643    345789999999998    899999999999998761  111457899999999999   


Q ss_pred             -hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHH
Q psy875          203 -QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH-D-----KFTELEQIKTELKSLE  261 (480)
Q Consensus       203 -~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~l~  261 (480)
                       .++ +++|+.+|+++.+.   .++.    .++..|+.+|... |     ++++|..+++++.+..
T Consensus       141 ~~~d-~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          141 GPED-DVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             SSCC-HHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             CCCC-HHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence             888 99999999999765   1222    3678999999864 3     8999999999998764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.55  E-value=4.1e-13  Score=123.01  Aligned_cols=198  Identities=12%  Similarity=0.088  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ....+...++.+|...|+++.|+..++.       ..+....++..++.. +...+++++|+..+++.+..... ++   
T Consensus        32 ~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~-~~~~~~~~~A~~~l~~ll~~~~~-P~---   99 (291)
T 3mkr_A           32 RDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEY-LASHSRRDAIVAELDREMSRSVD-VT---   99 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHH-HHCSTTHHHHHHHHHHHHHSCCC-CS---
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHhcccC-CC---
Confidence            3345677889999999999999986644       133456777888888 55559999999999998754211 11   


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...++..+|.+|...|++++|+..|++       +....++..+|.+|..+|++++|+..++++++..+...  ......
T Consensus       100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~l~~  170 (291)
T 3mkr_A          100 NTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT--LTQLAT  170 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH--HHHHHH
Confidence            245678999999999999999999988       34457889999999999999999999999998843321  111111


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .+..++...|+ +++|+..|+++++.      .+....++..+|.++..+|++++|...++++.++
T Consensus       171 a~~~l~~~~~~-~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          171 AWVSLAAGGEK-LQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHCTTH-HHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchH-HHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            11223334588 99999999999876      2234568889999999999999999999999874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.55  E-value=6.2e-13  Score=131.58  Aligned_cols=189  Identities=9%  Similarity=0.060  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhcC
Q psy875           37 ASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        37 ~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      +.+++.||.+|..    .+++++|+++|+++.+.      ....++..+|.+|...   .+++++|+.+|++|.+..   
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  145 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---  145 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence            3456666666666    66666666666666544      1234455566664431   256666666666665431   


Q ss_pred             CCchHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhh
Q psy875          110 KDDKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRL  181 (480)
Q Consensus       110 ~~~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~  181 (480)
                           ...++.++|.+|..    .+++++|+.+|+++....    ...++..+|.+|..    .+++++|+.+|+++.+.
T Consensus       146 -----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  216 (490)
T 2xm6_A          146 -----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS  216 (490)
T ss_dssp             -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence                 13455666666665    566666666666665431    23556666666666    66666666666666553


Q ss_pred             hhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHH
Q psy875          182 HARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQI  253 (480)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~  253 (480)
                            ....++..+|.+|..    .++ +++|+.+|+++.+.    +    ...+...++.+|..    .+++++|..+
T Consensus       217 ------~~~~a~~~lg~~y~~g~g~~~~-~~~A~~~~~~a~~~----~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~  281 (490)
T 2xm6_A          217 ------GDELGQLHLADMYYFGIGVTQD-YTQSRVLFSQSAEQ----G----NSIAQFRLGYILEQGLAGAKEPLKALEW  281 (490)
T ss_dssp             ------TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHTT----T----CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             ------CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence                  113456666666665    555 66666666666542    1    12355667777776    6777777777


Q ss_pred             HHHHH
Q psy875          254 KTELK  258 (480)
Q Consensus       254 ~~~~~  258 (480)
                      ++++.
T Consensus       282 ~~~a~  286 (490)
T 2xm6_A          282 YRKSA  286 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.54  E-value=9.7e-14  Score=109.87  Aligned_cols=116  Identities=14%  Similarity=0.119  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      .|..+.++.++|..|...|+|++|+.+|++++...|  ....++.++|.+|..+|++++|+..|++++++    .+....
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~   82 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRL----DSKFIK   82 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----hhhhhH
Confidence            467788999999999999999999999999997764  44688999999999999999999999999999    455578


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL  240 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  240 (480)
                      ++.++|.++..+|+ +++|+..|++++++      .|....+...|+.+
T Consensus        83 a~~~lg~~~~~~~~-~~~A~~~~~~al~l------~P~~~~a~~~l~~~  124 (126)
T 4gco_A           83 GYIRKAACLVAMRE-WSKAQRAYEDALQV------DPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHH------CcCCHHHHHHHHHh
Confidence            89999999999999 99999999999988      33334455555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.54  E-value=8.8e-14  Score=110.12  Aligned_cols=102  Identities=13%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      +..+.++.++|..|+..|+|++|+++|++++++    .|....++.++|.+| ..+|++++|+..+++|+++.+.     
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~-----   79 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENAILYSNRAACL-TKLMEFQRALDDCDTCIRLDSK-----   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHhhHH-HhhccHHHHHHHHHHHHHhhhh-----
Confidence            344555555555555555555555555555555    344444555555553 2225555555555555554221     


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD  146 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~  146 (480)
                       ...++.++|.+|..+|++++|+.+|++++...
T Consensus        80 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           80 -FIKGYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence             13344555555555555555555555555444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.52  E-value=1.3e-12  Score=129.16  Aligned_cols=191  Identities=13%  Similarity=0.163  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhhhc
Q psy875           36 LASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        36 ~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~~A~~~~~kAl~~~~~  108 (480)
                      -+.+++.+|.+|..    .+++++|+.+|+++.+.      ....+++.+|.+|...   .+++++|+.+|++|.+..  
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--  109 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--  109 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence            36789999999998    89999999999999876      2356788999996650   489999999999998641  


Q ss_pred             CCCchHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHh
Q psy875          109 NKDDKLIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELR  180 (480)
Q Consensus       109 ~~~~~~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~  180 (480)
                            ...++.++|.+|..    .+++++|+.+|+++....    ...++.+||.+|..    .+++++|+++|+++.+
T Consensus       110 ------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~  179 (490)
T 2xm6_A          110 ------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE  179 (490)
T ss_dssp             ------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence                  24677899999999    899999999999987542    35789999999998    8999999999999987


Q ss_pred             hhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHH
Q psy875          181 LHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQ  252 (480)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~  252 (480)
                      .      ..+.++..+|.+|..    .++ +++|+.+|+++.+.    ++    ..+...++.+|..    .+++++|..
T Consensus       180 ~------~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~  244 (490)
T 2xm6_A          180 Q------GNVWSCNQLGYMYSRGLGVERN-DAISAQWYRKSATS----GD----ELGQLHLADMYYFGIGVTQDYTQSRV  244 (490)
T ss_dssp             T------TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             C------CCHHHHHHHHHHHhcCCCCCcC-HHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            5      125788999999998    888 99999999999764    22    3577889999997    899999999


Q ss_pred             HHHHHHH
Q psy875          253 IKTELKS  259 (480)
Q Consensus       253 ~~~~~~~  259 (480)
                      +++++.+
T Consensus       245 ~~~~a~~  251 (490)
T 2xm6_A          245 LFSQSAE  251 (490)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=1.2e-12  Score=121.06  Aligned_cols=184  Identities=8%  Similarity=0.015  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH------hhccH-------HHHHHHHHHHHH-hhhcCCCchHHHHHH
Q psy875           54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL------QEKSF-------EIVQSTHEKALD-LARQNKDDKLIRTVM  119 (480)
Q Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~------~~~~~-------~~A~~~~~kAl~-~~~~~~~~~~~~~~~  119 (480)
                      ++|+..|++++..    .+....+|..+|.++..      ..|++       ++|+..|++|+. +.+.      ...++
T Consensus        33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~------~~~~~  102 (308)
T 2ond_A           33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NMLLY  102 (308)
T ss_dssp             HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT------CHHHH
T ss_pred             HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc------cHHHH
Confidence            7899999999998    56667778888888432      24775       999999999998 5332      24578


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~  199 (480)
                      ..+|.++...|++++|...|++++...+... ..++.++|.++...|++++|+..|+++++..+..    ...+...+.+
T Consensus       103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~  177 (308)
T 2ond_A          103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC----THHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Confidence            8999999999999999999999998765432 1378999999999999999999999999874432    3445555555


Q ss_pred             HHH-hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          200 YEL-QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       200 ~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ... .|+ +++|...|+++++...      ....++..++.++..+|++++|...++++..
T Consensus       178 ~~~~~~~-~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          178 EYYCSKD-KSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHTSCC-HHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCC-HHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            443 688 9999999999998742      2356778899999999999999999999876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.50  E-value=5.5e-14  Score=131.67  Aligned_cols=159  Identities=12%  Similarity=0.065  Sum_probs=130.9

Q ss_pred             ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC---------chHHHHHH
Q psy875           49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD---------DKLIRTVM  119 (480)
Q Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~---------~~~~~~~~  119 (480)
                      ..+++++|+..|+++++.    .+..+.++..+|.+|+.. |+|++|+.+|++|+.+.+....         .+....++
T Consensus       125 ~L~~~~~A~~~~~~a~~~----~p~~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  199 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKE-GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH  199 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH----HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH----HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence            457778888888887776    667778888999995555 9999999999999988765431         23346789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~  199 (480)
                      .++|.+|..+|++++|+.+|++++...+  ....+++++|.+|..+|++++|+.+|++++++.    |....++..+|.+
T Consensus       200 ~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~  273 (336)
T 1p5q_A          200 LNLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
Confidence            9999999999999999999999998764  456889999999999999999999999999994    3445688999999


Q ss_pred             HHHhCCchHHH-HHHHHHHHH
Q psy875          200 YELQEKPFELV-VSTHEKALD  219 (480)
Q Consensus       200 ~~~~~~~~~~A-~~~~~~al~  219 (480)
                      +..+|+ +++| ...|++.+.
T Consensus       274 ~~~~~~-~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          274 QQRIRR-QLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHH
Confidence            999999 9888 446666554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=3.9e-13  Score=106.60  Aligned_cols=105  Identities=14%  Similarity=0.258  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEA  189 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~  189 (480)
                      ...+.++.++|..+...|+|++|+.+|++++...|  ..+.++.++|.+|..+|+|++|+.++++++++.+.   .....
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            34567889999999999999999999999998765  44678999999999999999999999999998655   34556


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +.++.++|.++..+|+ +++|+++|++++..
T Consensus        83 a~~~~~lg~~~~~~~~-~~~A~~~~~kal~~  112 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQND-LSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence            7899999999999999 99999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=3.1e-13  Score=136.37  Aligned_cols=155  Identities=10%  Similarity=0.042  Sum_probs=118.2

Q ss_pred             cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q psy875           50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH  129 (480)
Q Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~  129 (480)
                      .|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.+|++++++.+..      ..++.++|.+|..+
T Consensus         2 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~   70 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWTQ   70 (568)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC
Confidence            47899999999999998    566677899999995555 99999999999999875432      56789999999999


Q ss_pred             CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh---CCc
Q psy875          130 DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ---EKP  206 (480)
Q Consensus       130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~---~~~  206 (480)
                      |++++|+.+|++++...+.  ...++.++|.+|..+|++++|+++|++++++.    +....++.++|.++..+   |+ 
T Consensus        71 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~g~-  143 (568)
T 2vsy_A           71 QRHAEAAVLLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQLLNWRRRLCDWRA-  143 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCTT-
T ss_pred             CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhcccc-
Confidence            9999999999999977644  46789999999999999999999999999983    44467889999999999   99 


Q ss_pred             hHHHHHHHHHHHHHHH
Q psy875          207 FELVVSTHEKALDLAR  222 (480)
Q Consensus       207 ~~~A~~~~~~al~~~~  222 (480)
                      +++|...++++++...
T Consensus       144 ~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          144 LDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999988743

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.50  E-value=9.5e-14  Score=142.64  Aligned_cols=171  Identities=10%  Similarity=-0.080  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL  114 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~  114 (480)
                      ....+++.+|.++...|++++|+..|+++++.    .+....+++++|.+|.. .|++++|+..|++|+++.+..     
T Consensus       431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~-----  500 (681)
T 2pzi_A          431 ESVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGE-----  500 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC-----
T ss_pred             cchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----
Confidence            34578999999999999999999999999999    56667889999999555 599999999999999986543     


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                       ..++.++|.+|..+|++++ +.+|++++...+  ....+++++|.+|..+|++++|+.+|++++++    .+....++.
T Consensus       501 -~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~  572 (681)
T 2pzi_A          501 -LAPKLALAATAELAGNTDE-HKFYQTVWSTND--GVISAAFGLARARSAEGDRVGAVRTLDEVPPT----SRHFTTARL  572 (681)
T ss_dssp             -SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT----STTHHHHHH
T ss_pred             -hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHHHHhhccc----CcccHHHHH
Confidence             4678899999999999999 999999997764  44578999999999999999999999999988    667788999


Q ss_pred             HHHHHHHHhCCchHHH-HHHHHHHHHHHHHc
Q psy875          195 EIGDLYELQEKPFELV-VSTHEKALDLARQN  224 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A-~~~~~~al~~~~~~  224 (480)
                      ++|.++...++ .+++ ...+++|+......
T Consensus       573 ~~~~~~~~~~~-~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          573 TSAVTLLSGRS-TSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHTC--------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHccCC-CCCCCHHHHHHHHHHHhhC
Confidence            99999988777 6666 67778887766554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.49  E-value=5.6e-14  Score=131.60  Aligned_cols=190  Identities=18%  Similarity=0.176  Sum_probs=147.4

Q ss_pred             HhccccHHHHHHHHHH----HHHHhhccCchHHHHHHHHHHHH-----------HHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           47 YKDNKQYNLAVDYFNK----ELRLHARNFPEAVKTLGEIGDLY-----------ELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        47 ~~~~~~~~~A~~~~~~----al~~~~~~~~~~~~~~~~lg~~y-----------~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      +...+.+++|+..+.+    ++.+    .+..  +|...|..+           ...++++++|+..+++++..      
T Consensus        75 ~~~~~~~e~al~~~~~Ge~~~l~i----~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~------  142 (336)
T 1p5q_A           75 LDLPYGLERAIQRMEKGEHSIVYL----KPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEE------  142 (336)
T ss_dssp             GTCCHHHHHHHTTCCTTCEEEEEE----CTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHH------
T ss_pred             cccchHHHHHHhcCCCCCeEEEEE----CCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHH------
Confidence            3345577777777776    5444    3332  334444331           12457777887777776654      


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-------------HHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-------------LASCYISLAQTYKDNKQYNLAVDYFNKE  178 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-------------~~~~~~~la~~y~~~~~~~~A~~~~~~a  178 (480)
                      .+..+.++.++|.+|...|+|++|+.+|++++...+...             ...++.++|.+|..+|+|++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345578899999999999999999999999998776532             2688999999999999999999999999


Q ss_pred             HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q psy875          179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTEL-EQIKTEL  257 (480)
Q Consensus       179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~  257 (480)
                      +++    .+....+++++|.+|..+|+ +++|+.+|++++++      .+....++..++.++..+|++++| ...++++
T Consensus       223 l~~----~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          223 LEL----DSNNEKGLSRRGEAHLAVND-FELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh----CCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999    44557889999999999999 99999999999988      333456888999999999999999 4456655


Q ss_pred             HH
Q psy875          258 KS  259 (480)
Q Consensus       258 ~~  259 (480)
                      ..
T Consensus       292 ~~  293 (336)
T 1p5q_A          292 FE  293 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=3.5e-13  Score=113.62  Aligned_cols=166  Identities=13%  Similarity=0.051  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      ..++.+|..+...|++++|+..|+++++.    .|....++..+|.+| ...|++++|+..+++++...+   ++    .
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~~-~~~g~~~~A~~~~~~a~~~~p---~~----~   74 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE----LQSRGDVKLAKADCL-LETKQFELAQELLATIPLEYQ---DN----S   74 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH----HHTSHHHHHHHHHHH-HHTTCHHHHHHHHTTCCGGGC---CH----H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHhhhccC---Ch----H
Confidence            35678899999999999999999999998    666678889999995 455999999999999987654   11    1


Q ss_pred             HHHHHHHHH-HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          118 VMRSIKKLY-KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       118 ~~~~l~~~y-~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      ....++.+. ...++..+|+..+++++...|.  ...++.++|.++...|++++|+.+|+++++..+..  ....++..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~a~~~l  150 (176)
T 2r5s_A           75 YKSLIAKLELHQQAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGA--QDGEVKKTF  150 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--TTTHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ChHHHHHHH
Confidence            222333332 2334555689999999976654  45789999999999999999999999999883321  124578899


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      |.++..+|+ +++|...|++++..
T Consensus       151 ~~~~~~~g~-~~~A~~~y~~al~~  173 (176)
T 2r5s_A          151 MDILSALGQ-GNAIASKYRRQLYS  173 (176)
T ss_dssp             HHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCcHHHHHHHHHHH
Confidence            999999999 99999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.48  E-value=2.7e-12  Score=106.62  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ...+..++.+|..+...|++++|+.+|+++++.    .+....++..+|.+| ...|++++|+.++++++.+.+..    
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~~~~----   80 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAY-LRTECYGYALGDATRAIELDKKY----   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCccc----
Confidence            345667777888888888888888888888777    444466677777774 44477888888888877764321    


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                        ..++.++|.+|..+|++++|+.+|++++...+.......+..++..+...|++++|+.++.++..+.
T Consensus        81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence              4466777777777777777777777777666554434444555555777777777777777766553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.47  E-value=1.9e-12  Score=126.11  Aligned_cols=141  Identities=8%  Similarity=-0.048  Sum_probs=126.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEA  189 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~  189 (480)
                      ...+..+..+|+|++|+..|++++.+...      +.++.++.+||.+|..+|+|++|+.++++++++...    ++|..
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            35556688999999999999999876543      567899999999999999999999999999998554    89999


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN--KDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      +..+.+||.+|..+|+ |++|+.+|++|+++.+..  .+.+........|+.++..++.+++|+..|+++.+-.
T Consensus       393 a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999988774  5788999999999999999999999999999987644

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.47  E-value=1e-12  Score=120.16  Aligned_cols=169  Identities=10%  Similarity=-0.007  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ....++.+|..+...|++++|+..|+++++.    .|....++..+|.+| ...|++++|+..+++++...+   +   .
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~~-~~~g~~~~A~~~l~~~~~~~p---~---~  184 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL----SNQNGEIGLLLAETL-IALNRSEDAEAVLXTIPLQDQ---D---T  184 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTSCHHHHHHHHHHH-HHTTCHHHHHHHHTTSCGGGC---S---H
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCcchhHHHHHHHHH-HHCCCHHHHHHHHHhCchhhc---c---h
Confidence            3567899999999999999999999999999    666678899999995 555999999999999987643   1   2


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      .......+..+...++.++|+..|++++...|  ....+++++|.+|...|++++|+..|.++++..++.  ....++.+
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~--~~~~a~~~  260 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA--ADGQTRXT  260 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG--GGGHHHHH
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc--ccchHHHH
Confidence            34456777778889999999999999997765  445789999999999999999999999999983321  12678899


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ++.++...|+ .++|...|++++..
T Consensus       261 l~~~~~~~g~-~~~a~~~~r~al~~  284 (287)
T 3qou_A          261 FQEILAALGT-GDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-CCcHHHHHHHHHHH
Confidence            9999999999 99999999999864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.46  E-value=8.1e-13  Score=133.29  Aligned_cols=154  Identities=8%  Similarity=-0.083  Sum_probs=119.5

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~  169 (480)
                      |++++|+.+++++++..+.      ...++.++|.+|...|++++|+.+|++++...+.  ...++.++|.+|..+|+++
T Consensus         3 g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~   74 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQ------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHA   74 (568)
T ss_dssp             ------------------C------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence            7899999999999987543      2567899999999999999999999999987654  4678999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---CC
Q psy875          170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKH---DK  246 (480)
Q Consensus       170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~  246 (480)
                      +|+.+|++++++    .+....++.++|.++...|+ +++|+.+|++++++      .+....++..++.++..+   |+
T Consensus        75 ~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~g~  143 (568)
T 2vsy_A           75 EAAVLLQQASDA----APEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRLCDWRA  143 (568)
T ss_dssp             HHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhcccc
Confidence            999999999998    34446789999999999999 99999999999987      233457888999999999   99


Q ss_pred             hHHHHHHHHHHHHHHH
Q psy875          247 FTELEQIKTELKSLEE  262 (480)
Q Consensus       247 ~~~A~~~~~~~~~l~~  262 (480)
                      +++|...++++.+...
T Consensus       144 ~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          144 LDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999987653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.46  E-value=3.2e-12  Score=116.91  Aligned_cols=170  Identities=10%  Similarity=-0.003  Sum_probs=143.5

Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH
Q psy875           72 PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL  151 (480)
Q Consensus        72 ~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~  151 (480)
                      +.....+..+|..+. ..|++++|+..|++++...+..      ..++..+|.++...|++++|+..+++++...+  ..
T Consensus       114 p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~  184 (287)
T 3qou_A          114 PREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DT  184 (287)
T ss_dssp             CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SH
T ss_pred             CCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--ch
Confidence            455667788999954 4599999999999999886533      56789999999999999999999999987765  33


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR  231 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  231 (480)
                      .......+..+...++.++|+..+++++..    .|....+++++|.++...|+ +++|+..|+++++....    ....
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~----~~~~  255 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAE----NPEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLT----AADG  255 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT----GGGG
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhc----CCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccc----cccc
Confidence            456667788888999999999999999998    55567889999999999999 99999999999987211    1225


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          232 TVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .++..++.++..+|+.++|...++++..
T Consensus       256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          256 QTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            6788999999999999999999998765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.46  E-value=2.5e-12  Score=125.23  Aligned_cols=146  Identities=8%  Similarity=0.011  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc--CCC
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ--NKD  111 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~--~~~  111 (480)
                      ......+..+..+|+|++|+..+++++++.    ..+++..+.++.++|.+|..+ |+|++|+.++++++.+...  ..+
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCC
Confidence            344556667888999999999999999986    677889999999999996555 9999999999999987654  456


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      ++..+..+++||.+|..+|++++|+.+|++++.+...      |.++.+..+++.++.+++.|++|...|.++.+...+
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~  467 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN  467 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7888999999999999999999999999988865433      566778888899999999999999999888766433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.45  E-value=4.3e-13  Score=109.36  Aligned_cols=103  Identities=12%  Similarity=0.057  Sum_probs=92.5

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      .+....++.++|.++...|++++|+.+|++++...|  ....++.++|.+|..+|+|++|+.+|++++++.+    ..+.
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P----~~~~  105 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK----NDYT  105 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS----SCCH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC----CCcH
Confidence            456678899999999999999999999999997765  4457899999999999999999999999999944    4456


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      +++++|.+|..+|+ +++|+.+|++++++.
T Consensus       106 ~~~~lg~~~~~lg~-~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          106 PVFHTGQCQLRLKA-PLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence            89999999999999 999999999999874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.45  E-value=2.6e-12  Score=114.38  Aligned_cols=208  Identities=8%  Similarity=-0.049  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHH-------HHHHHHhhccHHHHHHHHHHHHHhhhcC
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI-------GDLYELQEKSFEIVQSTHEKALDLARQN  109 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l-------g~~y~~~~~~~~~A~~~~~kAl~~~~~~  109 (480)
                      ....+..|.-+ ..+++..|.+.|.++.++    .|..+.+|..+       +.+ ....+.+.+++..+++++.+....
T Consensus         7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~-L~~~~r~~~a~~~~~~~l~l~p~~   80 (282)
T 4f3v_A            7 LASLFESAVSM-LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVT-LFRAWYSRRNFGQLSGSVQISMST   80 (282)
T ss_dssp             HHHHHHHHHHH-TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHH-HHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred             HHHHHHHHhcc-cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHH-HHHHHHHHHHHHHHHHHhcCChhh
Confidence            34455666665 589999999999999999    88889999988       788 566688899999999999754432


Q ss_pred             CCc---------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875          110 KDD---------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY  174 (480)
Q Consensus       110 ~~~---------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~  174 (480)
                      -..               ..-..+...++.++...|+|++|.+.|...+...  +... ..+.+|.++.+.++|++|+.+
T Consensus        81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~  157 (282)
T 4f3v_A           81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQ  157 (282)
T ss_dssp             GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHH
Confidence            111               1113456678999999999999999999887654  3444 789999999999999999999


Q ss_pred             HHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy875          175 FNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD-DKLIRTVMRSMKKLYKKHDKFTELEQI  253 (480)
Q Consensus       175 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~  253 (480)
                      |+++....  ++.....+++.+|.++..+|+ +++|+.+|++++.    ... +.....+...+|.++.++|+.++|...
T Consensus       158 l~~a~~~~--d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~deA~~~  230 (282)
T 4f3v_A          158 VKSAGKWP--DKFLAGAAGVAHGVAAANLAL-FTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESAAVAL  230 (282)
T ss_dssp             HTTGGGCS--CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhhccC--CcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            98765542  222235689999999999999 9999999999863    122 333677889999999999999999999


Q ss_pred             HHHHHHH
Q psy875          254 KTELKSL  260 (480)
Q Consensus       254 ~~~~~~l  260 (480)
                      ++++...
T Consensus       231 l~~a~a~  237 (282)
T 4f3v_A          231 LEWLQTT  237 (282)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.45  E-value=4.1e-12  Score=101.16  Aligned_cols=131  Identities=24%  Similarity=0.438  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      .+++.+|.++...|++++|+.+++++++.    .+....++..+|.+|... |++++|+.++++++...+..      ..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~   70 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRS------AE   70 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCc------hH
Confidence            45677888888888888888888888777    344455667778874444 78888888888887664321      34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      ++..+|.++...|++++|+.++++++...+.  ...++..+|.+|...|++++|+.+++++++.
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            5667788888888888888888877765433  2456777788888888888888888877765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.44  E-value=1.1e-12  Score=114.02  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      ...+.++|.++...|++++|+.+|++++..     ...++.++|.+|...|++++|+.+|++++++    .+....++.+
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~   76 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQDP-----HSRICFNIGCMYTILKNMTEAEKAFTRSINR----DKHLAVAYFQ   76 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchHHHHH
Confidence            445789999999999999999999998622     3578999999999999999999999999998    3445678999


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNK----------DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +|.++...|+ +++|+.+|+++++......          ..+....++..+|.+|..+|++++|..+++++.++
T Consensus        77 lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           77 RGMLYYQTEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            9999999999 9999999999998755443          34456688999999999999999999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.44  E-value=3.1e-13  Score=110.20  Aligned_cols=104  Identities=8%  Similarity=-0.034  Sum_probs=81.4

Q ss_pred             CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875           71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus        71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      .|....+++.+|.+|+.. |++++|+.+|++++.+.+..      ..++.++|.+|..+|+|++|+.+|++++...|...
T Consensus        32 ~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            667777888888885444 88888888888888774432      55778888888888888888888888887775533


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                        .+++++|.+|..+|++++|+.+|++++++.+
T Consensus       105 --~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          105 --TPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence              6788888888888888888888888888743

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.44  E-value=1.4e-12  Score=109.99  Aligned_cols=164  Identities=10%  Similarity=-0.017  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHH
Q psy875           77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI  156 (480)
Q Consensus        77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~  156 (480)
                      .+...|..+.. .|++++|+..|++++...+..      ..++..+|.+|...|++++|+.+|++++...+ ..  ..+.
T Consensus         8 ~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~   77 (176)
T 2r5s_A            8 QLLKQVSELLQ-QGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKS   77 (176)
T ss_dssp             THHHHHHHHHH-TTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHH
Confidence            45677888444 499999999999999875533      56889999999999999999999999987776 22  2333


Q ss_pred             HHHHHH-HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy875          157 SLAQTY-KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMR  235 (480)
Q Consensus       157 ~la~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  235 (480)
                      .++.+. ...++..+|+..++++++.    .|....++..+|.++...|+ +++|+..|+++++....    .....++.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~al~~----~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~----~~~~~a~~  148 (176)
T 2r5s_A           78 LIAKLELHQQAAESPELKRLEQELAA----NPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLG----AQDGEVKK  148 (176)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTT----TTTTHHHH
T ss_pred             HHHHHHHHhhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcc----cChHHHHH
Confidence            344443 2334455689999999998    45557889999999999999 99999999999876211    11235778


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH
Q psy875          236 SMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       236 ~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .++.++..+|+.++|...++++..
T Consensus       149 ~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          149 TFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=3.5e-12  Score=100.82  Aligned_cols=122  Identities=13%  Similarity=0.055  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      .+..+..+|..+...|+|++|+.+|++++...+.  ...++.++|.+|..+|++++|+.++++++++    .|....++.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~   76 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEK----DPNFVRAYI   76 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHH
Confidence            3567889999999999999999999999977644  4588999999999999999999999999999    444577899


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  243 (480)
                      .+|.++..+|+ +++|+..|++++++.....+.+....+...++.+..+
T Consensus        77 ~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           77 RKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999 9999999999999976555555556666666666544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.42  E-value=7.7e-12  Score=103.82  Aligned_cols=143  Identities=14%  Similarity=0.108  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                      ...+..+..+|.++...|++++|+.+|++++...+.  ...++.++|.++...|++++|+.+++++++..    +....+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~   83 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHH
Confidence            345677899999999999999999999999976643  46789999999999999999999999999983    444678


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLDL  266 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~~  266 (480)
                      +..+|.++...|+ +++|+.++++++.+..   ... .......++..+...|++++|..++++...+.+++..
T Consensus        84 ~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p---~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  152 (166)
T 1a17_A           84 YYRRAASNMALGK-FRAALRDYETVVKVKP---HDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI  152 (166)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHST---TCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcc-HHHHHHHHHHHHHhCC---CCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence            9999999999999 9999999999987732   122 2233455666688999999999999999998887665

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.42  E-value=1.1e-11  Score=120.94  Aligned_cols=186  Identities=14%  Similarity=0.144  Sum_probs=151.0

Q ss_pred             HHHHHHHHHhccc---cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhhhcCCC
Q psy875           39 CYISLAQTYKDNK---QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE----KSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        39 ~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~----~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      +++.||.+|...|   ++++|+++|+++.+.    .+..+..++++|.+ +...    +++++|+.+|++|.   +  ++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~a~~~~~Lg~~-y~~g~~~~~d~~~A~~~~~~aa---~--g~  247 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVTAQRVDSVARV-LGDATLGTPDEKTAQALLEKIA---P--GY  247 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSCHHHHHHHHHH-HTCGGGSSCCHHHHHHHHHHHG---G--GS
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-HhCCCCCCCCHHHHHHHHHHHc---C--CC
Confidence            8899999999999   999999999999988    55556667889999 4553    68999999999987   2  11


Q ss_pred             chHHHHHHHHHHHH-H--HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-----cHHHHHHHHHHHHhhhh
Q psy875          112 DKLIRTVMRSIKKL-Y--KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-----QYNLAVDYFNKELRLHA  183 (480)
Q Consensus       112 ~~~~~~~~~~l~~~-y--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-----~~~~A~~~~~~al~~~~  183 (480)
                          ..++.++|.+ |  ...+++++|+.+|+++....    ...++++||.+|. .|     ++++|+.+|+++.   .
T Consensus       248 ----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~  315 (452)
T 3e4b_A          248 ----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G  315 (452)
T ss_dssp             ----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred             ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence                4577899998 5  57899999999999988432    4578899999998 56     9999999999987   2


Q ss_pred             cCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHH
Q psy875          184 RNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKT  255 (480)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~  255 (480)
                      +    .+.+++++|.+|..    ..+ +++|..+|+++.+.    ++    ..+...||.+|..    ..++.+|..+++
T Consensus       316 g----~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~  382 (452)
T 3e4b_A          316 R----EVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAARN----GQ----NSADFAIAQLFSQGKGTKPDPLNAYVFSQ  382 (452)
T ss_dssp             T----CHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHTT----TC----TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred             C----CHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHhh----Ch----HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            2    25688999998887    336 99999999998753    22    3467789999985    568999999999


Q ss_pred             HHHH
Q psy875          256 ELKS  259 (480)
Q Consensus       256 ~~~~  259 (480)
                      ++.+
T Consensus       383 ~A~~  386 (452)
T 3e4b_A          383 LAKA  386 (452)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8865

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=5.8e-12  Score=109.51  Aligned_cols=135  Identities=19%  Similarity=0.200  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHH
Q psy875           77 TLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI  156 (480)
Q Consensus        77 ~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~  156 (480)
                      .++.+|.+|+.. |++++|+.+|++++.     +    ...++.++|.+|...|++++|+.+|++++...+  ....++.
T Consensus         8 ~~~~~g~~~~~~-~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~   75 (213)
T 1hh8_A            8 SLWNEGVLAADK-KDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYF   75 (213)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred             HHHHHHHHHHHh-CCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHH
Confidence            345555553333 666666666655531     0    123555666666666666666666666654442  3345566


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhcC------------cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          157 SLAQTYKDNKQYNLAVDYFNKELRLHARN------------FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                      ++|.+|..+|++++|+.+|+++++..+.+            .+....++.++|.++..+|+ +++|+.++++++++....
T Consensus        76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCccc
Confidence            66666666666666666666666653331            23344566666666666666 666666666666655444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.40  E-value=5.6e-13  Score=114.75  Aligned_cols=158  Identities=10%  Similarity=0.017  Sum_probs=111.9

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch--------
Q psy875           42 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK--------  113 (480)
Q Consensus        42 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~--------  113 (480)
                      ..+......|.+++|.+.+......    ....+..+..+|..|+.. |+|++|+.+|++++.+.+...+..        
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   83 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEE----KVQSAFDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTEEWDDQILLDKK   83 (198)
T ss_dssp             -------------CCCSGGGCCHHH----HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHH----HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence            3444455566666666666554433    445566777888885554 888888888888887765543211        


Q ss_pred             --HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          114 --LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       114 --~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                        ....++.++|.+|..+|++++|+.++++++...+  ....+++.+|.+|..+|++++|+.+|++++++.    +....
T Consensus        84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~  157 (198)
T 2fbn_A           84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLD  157 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHH
Confidence              1247889999999999999999999999997764  446789999999999999999999999999983    44467


Q ss_pred             HHHHHHHHHHHhCCchHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVV  211 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~  211 (480)
                      ++..++.++...++ +.++.
T Consensus       158 ~~~~l~~~~~~~~~-~~~~~  176 (198)
T 2fbn_A          158 IRNSYELCVNKLKE-ARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHH-HHC--
T ss_pred             HHHHHHHHHHHHHH-HHHHH
Confidence            78889999988888 77766

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.39  E-value=1.1e-11  Score=98.61  Aligned_cols=131  Identities=21%  Similarity=0.342  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      .++..+|.++...|++++|+.++++++...+.  ...++..+|.++...|++++|+.+++++++..    +.....+..+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l   75 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNL   75 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----CCchHHHHHH
Confidence            35778999999999999999999998866543  35678889999999999999999999998873    3335678889


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      |.++...|+ +++|+.++++++...      +....++..++.++...|++++|..+++++..+
T Consensus        76 ~~~~~~~~~-~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           76 GNAYYKQGD-YDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHTTTC-HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999999 999999999998762      222456778999999999999999999988764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.37  E-value=1e-12  Score=128.42  Aligned_cols=152  Identities=12%  Similarity=0.063  Sum_probs=120.1

Q ss_pred             ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC---------chHHHHHH
Q psy875           49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD---------DKLIRTVM  119 (480)
Q Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~---------~~~~~~~~  119 (480)
                      ..+++++|+..|.++++.    .+..+..+..+|.+|+.. |+|++|+.+|++|+.+.+....         ......++
T Consensus       246 ~l~~~~~A~~~~~~~~~~----~~~~a~~~~~~G~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE----KLEQAAIVKEKGTVYFKG-GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH----HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH----HHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence            345666777777776666    566677788888885554 8888888888888887665421         23346789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~  199 (480)
                      .++|.+|..+|+|++|+.+|++++...+.  ...+++++|.+|..+|+|++|+.+|++++++    .+....++..++.+
T Consensus       321 ~nla~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          321 LNLAMCYLKLREYTKAVECCDKALGLDSA--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV----NPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----C----CHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence            99999999999999999999999987654  4688999999999999999999999999998    45556789999999


Q ss_pred             HHHhCCchHHHHH
Q psy875          200 YELQEKPFELVVS  212 (480)
Q Consensus       200 ~~~~~~~~~~A~~  212 (480)
                      +..+++ +++|..
T Consensus       395 ~~~~~~-~~~a~~  406 (457)
T 1kt0_A          395 QKKAKE-HNERDR  406 (457)
T ss_dssp             HHHHHH-HHHHHH
T ss_pred             HHHHHH-HHHHHH
Confidence            999999 877764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.36  E-value=9.5e-13  Score=128.63  Aligned_cols=149  Identities=21%  Similarity=0.212  Sum_probs=123.8

Q ss_pred             hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-------------HHHH
Q psy875           88 QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-------------LASC  154 (480)
Q Consensus        88 ~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-------------~~~~  154 (480)
                      .++++++|+..+++++..      .+..+.++.++|..|...|+|++|+.+|++++...+...             ...+
T Consensus       246 ~l~~~~~A~~~~~~~~~~------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~  319 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA  319 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence            446677777777666554      345578899999999999999999999999998765532             2688


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVM  234 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  234 (480)
                      +.++|.+|..+|+|++|+.+|++++++    .+....+++++|.+|..+|+ |++|+..|++++++      .+....++
T Consensus       320 ~~nla~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l------~P~~~~a~  388 (457)
T 1kt0_A          320 FLNLAMCYLKLREYTKAVECCDKALGL----DSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEV------NPQNKAAR  388 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT------C----CHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh------CCCCHHHH
Confidence            999999999999999999999999999    44457889999999999999 99999999999987      44556788


Q ss_pred             HHHHHHHHHcCChHHHHHH
Q psy875          235 RSMKKLYKKHDKFTELEQI  253 (480)
Q Consensus       235 ~~l~~~~~~~g~~~~A~~~  253 (480)
                      ..++.++..++++++|...
T Consensus       389 ~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          389 LQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8999999999999888753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.36  E-value=2.1e-12  Score=111.13  Aligned_cols=149  Identities=17%  Similarity=0.124  Sum_probs=114.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc--------------H
Q psy875           86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD--------------L  151 (480)
Q Consensus        86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~--------------~  151 (480)
                      ...+++|++|.+.+.....      .....+..+..+|..+...|+|++|+.+|++++...+...              .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDE------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             --------CCCSGGGCCHH------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHH------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence            3344666666555543322      2344577889999999999999999999999997655422              1


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR  231 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  231 (480)
                      ..++.++|.+|..+|+|++|+.++++++++    .+....+++.+|.++..+|+ +++|+.+|++++.+      .+...
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~------~p~~~  156 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI----DKNNVKALYKLGVANMYFGF-LEEAKENLYKAASL------NPNNL  156 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------STTCH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHH------CCCcH
Confidence            378999999999999999999999999998    44456789999999999999 99999999999987      33345


Q ss_pred             HHHHHHHHHHHHcCChHHHH
Q psy875          232 TVMRSMKKLYKKHDKFTELE  251 (480)
Q Consensus       232 ~~~~~l~~~~~~~g~~~~A~  251 (480)
                      .++..++.++..+++..++.
T Consensus       157 ~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          157 DIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            67788899999998888776

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.36  E-value=5e-12  Score=103.07  Aligned_cols=114  Identities=11%  Similarity=0.025  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875           97 STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN  176 (480)
Q Consensus        97 ~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~  176 (480)
                      ..|++++.+      .+....++.++|.++...|++++|+.+|++++...+.  ...++.++|.+|..+|++++|+.+|+
T Consensus         8 ~~~~~al~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~   79 (148)
T 2vgx_A            8 GTIAMLNEI------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYS   79 (148)
T ss_dssp             CSHHHHTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHcC------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            445666654      3445678899999999999999999999999977654  45788999999999999999999999


Q ss_pred             HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                      +++++.    |..+.+++++|.++..+|+ +++|+.+|++++++...
T Consensus        80 ~al~l~----p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           80 YGAVMD----IXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HHHHHS----TTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHhcC----CCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcC
Confidence            999994    4445788999999999999 99999999999988643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.35  E-value=1.8e-11  Score=98.61  Aligned_cols=108  Identities=10%  Similarity=0.061  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--
Q psy875           74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS--  145 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~--  145 (480)
                      .+..+.+.|..+ ...|+|++|+..|++|+++.+..++      .+....+|.++|.++..+|+|++|+.+|.+++..  
T Consensus        10 ~a~~~~~~G~~l-~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           10 GAYLALSDAQRQ-LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            345566778874 4448888888888888887765321      1233457888888888888888888888888866  


Q ss_pred             -----cccccHHHHH----HHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          146 -----DLCKDLASCY----ISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       146 -----~~~~~~~~~~----~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                           .  |....+|    +++|.++..+|++++|+..|++++++.++
T Consensus        89 ~~~e~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           89 RRGELN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHCCTT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                 4  3445566    77888888888888888888888777544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.34  E-value=4.3e-11  Score=116.78  Aligned_cols=191  Identities=12%  Similarity=0.148  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhhhcCCCch
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK---SFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~---~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ..+++.+|.+|...+.+++++.......+......+.   +++.+|.+|.. .|   ++++|+.+|++|.+....     
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~-----  211 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTV-----  211 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCS-----
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCH-----
Confidence            4467778888887775555555533333332111222   77899999666 58   999999999999876432     


Q ss_pred             HHHHHHHHHHHHHHhc----CChHHHHHHHHHHhcccccccHHHHHHHHHHH-H--HhhccHHHHHHHHHHHHhhhhcCc
Q psy875          114 LIRTVMRSIKKLYKKH----DNLDSACSELHTVLSSDLCKDLASCYISLAQT-Y--KDNKQYNLAVDYFNKELRLHARNF  186 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y--~~~~~~~~A~~~~~~al~~~~~~~  186 (480)
                       .+..+.++|.+|...    +++++|+.+|+++.     +....++++||.+ |  ...+++++|+.+|+++.+.     
T Consensus       212 -~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----  280 (452)
T 3e4b_A          212 -TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----  280 (452)
T ss_dssp             -CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----
T ss_pred             -HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----
Confidence             244568899999776    79999999999987     3345788999998 5  5789999999999999865     


Q ss_pred             HHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQE-----KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK----HDKFTELEQIKTEL  257 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~  257 (480)
                       ..+.+++++|.+|. .|     + +++|+.+|++|.     .+    ...+...||.+|..    ..++++|..+++++
T Consensus       281 -g~~~A~~~Lg~~y~-~G~g~~~d-~~~A~~~~~~Aa-----~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          281 -DQPRAELLLGKLYY-EGKWVPAD-AKAAEAHFEKAV-----GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             -TCHHHHHHHHHHHH-HCSSSCCC-HHHHHHHHHTTT-----TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHH-cCCCCCCC-HHHHHHHHHHHh-----CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence             23678899999998 55     7 999999999987     12    34678889999887    45999999999988


Q ss_pred             HH
Q psy875          258 KS  259 (480)
Q Consensus       258 ~~  259 (480)
                      .+
T Consensus       349 a~  350 (452)
T 3e4b_A          349 AR  350 (452)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.34  E-value=3e-11  Score=97.33  Aligned_cols=109  Identities=12%  Similarity=0.031  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------c---cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------K---DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------~---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .+..+.++|..+...|+|++|+.+|++++...|.       .   ..+.+|.++|.++..+|+|++|+..|+++++++..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3566789999999999999999999999988876       1   12459999999999999999999999999998222


Q ss_pred             ---CcHHHHHHH----HHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          185 ---NFPEAVKTL----GEIGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       185 ---~~~~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                         -.|..+.+|    +++|.++..+|+ +++|+..|++++++....
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCc
Confidence               234456677    999999999999 999999999999986653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=3.5e-11  Score=120.24  Aligned_cols=209  Identities=12%  Similarity=0.111  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHHhc-------cccHH-------HHHHHHHHHHH-HhhccCchHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875           35 DLASCYISLAQTYKD-------NKQYN-------LAVDYFNKELR-LHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTH   99 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~   99 (480)
                      ....+++.+|.++..       .|+++       +|+..|++|++ +    .|.....|..+|.+ +...|++++|...|
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~----~p~~~~l~~~~~~~-~~~~g~~~~A~~~~  344 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYADY-EESRMKYEKVHSIY  344 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----CSSCHHHHHHHHHH-HHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----CcccHHHHHHHHHH-HHhcCCHHHHHHHH
Confidence            345678888888875       78877       89999999986 5    45667788899999 55559999999999


Q ss_pred             HHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH-HHhhccHHHHHHHHHHH
Q psy875          100 EKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT-YKDNKQYNLAVDYFNKE  178 (480)
Q Consensus       100 ~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y~~~~~~~~A~~~~~~a  178 (480)
                      ++++.+.+.   .  ...++..+|.++...|++++|...|++++...+..  ...+...+.+ +...|++++|..+|+++
T Consensus       345 ~~al~~~p~---~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~a  417 (530)
T 2ooe_A          345 NRLLAIEDI---D--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELG  417 (530)
T ss_dssp             HHHHHSSSS---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHhCcccc---C--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            999986332   1  12478899999999999999999999999775432  3444455544 44689999999999999


Q ss_pred             HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      ++..+    ..+.++..++.++...|+ +++|...|++++....  .++.....++.....+....|+.+.+..+.+++.
T Consensus       418 l~~~p----~~~~~~~~~~~~~~~~g~-~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          418 LKKYG----DIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             HHHHT----TCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHCC----CCHHHHHHHHHHHHhCCC-HhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99854    345788999999999999 9999999999986521  1222345567677888889999999999999988


Q ss_pred             HHHH
Q psy875          259 SLEE  262 (480)
Q Consensus       259 ~l~~  262 (480)
                      +...
T Consensus       491 ~~~p  494 (530)
T 2ooe_A          491 TAFR  494 (530)
T ss_dssp             HHTH
T ss_pred             HHCc
Confidence            7664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.34  E-value=8.8e-11  Score=123.41  Aligned_cols=186  Identities=15%  Similarity=0.139  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ..+|+.+|.++...|++++|+..|.+|         +....|..+|.+ +.+.|+|++|+++|..|.+..+...      
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~-~~~lGkyEEAIeyL~mArk~~~e~~------ 1168 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQA-ANTSGNWEELVKYLQMARKKARESY------ 1168 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhccccc------
Confidence            568899999999999999999999875         234566788999 6666999999999999987653221      


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                       +...+|..|.+++++++ ++.|.+      .+.. ..+.++|..+...|+|++|..+|.++            ..|..+
T Consensus      1169 -Idt~LafaYAKl~rlee-le~fI~------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rL 1227 (1630)
T 1xi4_A         1169 -VETELIFALAKTNRLAE-LEEFIN------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRL 1227 (1630)
T ss_pred             -ccHHHHHHHHhhcCHHH-HHHHHh------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHH
Confidence             11235666666666663 333321      1122 23445666666666666666666653            245566


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHH------------------HcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLAR------------------QNKD-DKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~------------------~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      |.++.++|+ +++|++.+++|.....                  ..+. .....+.+..++.+|.+.|.+++|+.+++.+
T Consensus      1228 A~tLvkLge-~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1228 ASTLVHLGE-YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             HHHHHHhCC-HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            666666666 6666666666532210                  0000 0012234457788888888888888888877


Q ss_pred             HHH
Q psy875          258 KSL  260 (480)
Q Consensus       258 ~~l  260 (480)
                      ..+
T Consensus      1307 L~L 1309 (1630)
T 1xi4_A         1307 LGL 1309 (1630)
T ss_pred             hcc
Confidence            543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.33  E-value=6.9e-12  Score=114.24  Aligned_cols=195  Identities=12%  Similarity=0.079  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +..++.+|..+...|+|++|+.+|.++++.    .+....++.++|.+|. ..|++++|+.++++|+.+.+.      ..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~------~~   72 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQ------SV   72 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTT------CH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC------CH
Confidence            567899999999999999999999999999    6666788999999955 459999999999999987432      25


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      .++.++|.+|..+|++++|+.+|++++...+.....  +........   +..++..+..........+ +   .+...+
T Consensus        73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~---~i~~~l  143 (281)
T 2c2l_A           73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSAL---RIAKKKRWNSIEERRIHQE-S---ELHSYL  143 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--CCSHHHHHH---HHHHHHHHHHHHHTCCCCC-C---HHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHH---HHHHHHHHHHHHHHHHhhh-H---HHHHHH
Confidence            678999999999999999999999999877653110  000111111   1111222222222221112 2   223334


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      +.+.  .|+ +++|++.++++++...   ........+..+..-+...  +++|...+.++.+
T Consensus       144 ~~l~--~~~-~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~--~~~a~~~f~~a~~  198 (281)
T 2c2l_A          144 TRLI--AAE-RERELEECQRNHEGHE---DDGHIRAQQACIEAKHDKY--MADMDELFSQVDE  198 (281)
T ss_dssp             HHHH--HHH-HHHHHTTTSGGGTTTS---CHHHHTHHHHHHHHHHHHH--HHHHHHHHHHSSC
T ss_pred             HHHH--HHH-HHHHHHHHHhhhcccc---chhhhhhHHHHHHHHHHHH--HHHHHHHHHhhhc
Confidence            4443  577 8999999988887621   1112222222222222111  2356777777766

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.33  E-value=9.5e-12  Score=101.39  Aligned_cols=115  Identities=9%  Similarity=-0.028  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHH
Q psy875           58 DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACS  137 (480)
Q Consensus        58 ~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~  137 (480)
                      ..|++++.+    .+.....++.+|.+++.. |++++|+..|++++.+.+..      ..++.++|.+|..+|++++|+.
T Consensus         8 ~~~~~al~~----~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~   76 (148)
T 2vgx_A            8 GTIAMLNEI----SSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIH   76 (148)
T ss_dssp             CSHHHHTTC----CHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHcC----CHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHH
Confidence            356666666    677777888888885555 89999999999988774432      4567888999999999999999


Q ss_pred             HHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875          138 ELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN  185 (480)
Q Consensus       138 ~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~  185 (480)
                      +|++++...|..  ..+++++|.+|..+|++++|+.+|++++++.+.+
T Consensus        77 ~~~~al~l~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           77 SYSYGAVMDIXE--PRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHSTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            999888776543  3678889999999999999999999998886553

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=4e-11  Score=94.68  Aligned_cols=97  Identities=12%  Similarity=0.108  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      ..+..+|..|+.. |+|++|+.+|++++.+.+..      ..++.++|.+|..+|++++|+.+|++++...+.  ...++
T Consensus         5 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~   75 (126)
T 3upv_A            5 EEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAY   75 (126)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred             HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHH
Confidence            3444555553332 55555555555555543221      244555555555555555555555555544332  23455


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      .++|.+|..+|++++|+.+|++++++
T Consensus        76 ~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           76 IRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            55555555555555555555555555

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=2.9e-11  Score=96.12  Aligned_cols=122  Identities=14%  Similarity=0.179  Sum_probs=104.3

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      .+....++..+|.++...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+.+++++++..    +....
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~   85 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLE----PTFIK   85 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----TTCHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCchH
Confidence            3556778999999999999999999999999977643  36789999999999999999999999999983    34467


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK  246 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  246 (480)
                      ++..+|.++...|+ +++|+.++++++..      .+....++..++.++..+|+
T Consensus        86 ~~~~la~~~~~~~~-~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           86 GYTRKAAALEAMKD-YTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh-HHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcC
Confidence            89999999999999 99999999999987      33345677788888887764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.32  E-value=4.8e-11  Score=99.10  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      .+..++.+|.++...|+|++|+.+|++++++    .+....++.++|.+|.. .|++++|+.++++++.+.+..      
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~------   78 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKY------   78 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC------
Confidence            4566777777777777777777777777777    44455666777777433 377777777777777664322      


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      ..++.++|.+|..+|++++|+.+|++++...+...
T Consensus        79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence            45666777777777777777777777776665543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.31  E-value=2.3e-11  Score=100.78  Aligned_cols=103  Identities=12%  Similarity=-0.019  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccc----------------cccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDL----------------CKDLASCYISLAQTYKDNKQYNLAVDYFN  176 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~----------------~~~~~~~~~~la~~y~~~~~~~~A~~~~~  176 (480)
                      ...+..+..+|..+...|+|++|+.+|.+++...+                .+....++.++|.+|..+|+|++|+.+++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34567889999999999999999999999987621                34557899999999999999999999999


Q ss_pred             HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +++++    .|..+.+++.+|.++..+|+ +++|+..|++++.+
T Consensus        88 ~al~~----~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l  126 (162)
T 3rkv_A           88 EVLKR----EETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHH----STTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHhc----CCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhc
Confidence            99999    45567899999999999999 99999999999988

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.30  E-value=2.5e-11  Score=100.65  Aligned_cols=126  Identities=16%  Similarity=0.107  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC------------chHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875           73 EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD------------DKLIRTVMRSIKKLYKKHDNLDSACSELH  140 (480)
Q Consensus        73 ~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~  140 (480)
                      ..+..+...|..|+.. |+|++|+.+|.+|+.+......            .+....++.++|.+|..+|+|++|+.+++
T Consensus         9 ~~a~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQ-KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3456677778775544 7888888888888876432110            34456789999999999999999999999


Q ss_pred             HHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhC
Q psy875          141 TVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE  204 (480)
Q Consensus       141 ~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~  204 (480)
                      +++...  |....+++.+|.+|..+|+|++|+.+|++++++.+.+.   ..+...++.+....+
T Consensus        88 ~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           88 EVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA---SVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHH
T ss_pred             HHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHH
Confidence            999776  44568899999999999999999999999999943322   133444555544433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.29  E-value=6.2e-11  Score=94.14  Aligned_cols=122  Identities=13%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875           71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus        71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      .+....++..+|.+|... |++++|+.++++++...+..      ..++..+|.+|...|++++|+.++++++...+  .
T Consensus        12 ~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~   82 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQK-GDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEP--T   82 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHT-TCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--T
T ss_pred             CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C
Confidence            455667788888885444 88888888888888764322      46778888888888888888888888886654  3


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC
Q psy875          151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK  205 (480)
Q Consensus       151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (480)
                      ...++..+|.+|...|++++|+.+++++++.    .+....++..++.++..+|+
T Consensus        83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CGGGTHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhcC
Confidence            4567888888888889999999999888887    33445677788888877664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.29  E-value=6e-11  Score=93.75  Aligned_cols=123  Identities=19%  Similarity=0.149  Sum_probs=105.1

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      .+....++..+|.++...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+.+++++++..    +....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~   81 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID----PAYSK   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----ccCHH
Confidence            4556778899999999999999999999999876643  35789999999999999999999999999983    33467


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  247 (480)
                      ++..+|.++...|+ +++|+.++++++...      +....++..++.++..+|++
T Consensus        82 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           82 AYGRMGLALSSLNK-HVEAVAYYKKALELD------PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCC-HHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHhcC
Confidence            88999999999999 999999999998872      22345778899999988876

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.28  E-value=1.3e-10  Score=106.00  Aligned_cols=209  Identities=15%  Similarity=0.088  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH---Hhh---ccHHHHHHHHHHHH
Q psy875           32 LCKDLASCYISLAQTYKDNK--QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE---LQE---KSFEIVQSTHEKAL  103 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~---~~~---~~~~~A~~~~~kAl  103 (480)
                      ..+....+++..+.+....+  .+++++.++.+++..    .|....+|+..+.+..   ..+   +++++++.++.+++
T Consensus        62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l  137 (306)
T 3dra_A           62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML  137 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred             HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence            33455678999999999998  999999999999999    6777777888888831   444   78999999999999


Q ss_pred             HhhhcCCCchHHHHHHHHHHHHHHhcCChH--HHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc------HHHHHHHH
Q psy875          104 DLARQNKDDKLIRTVMRSIKKLYKKHDNLD--SACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ------YNLAVDYF  175 (480)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~------~~~A~~~~  175 (480)
                      ...++.      ..++...+.+...+|.++  ++++++.+++...+..  ..++...+.+....++      ++++++++
T Consensus       138 ~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~  209 (306)
T 3dra_A          138 SSDPKN------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFLLFSKKHLATDNTIDEELNYV  209 (306)
T ss_dssp             HHCTTC------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred             HhCCCC------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            875543      567888999999999999  9999999999776544  4778888999998887      99999999


Q ss_pred             HHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875          176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       176 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      ++++..    .|....+|..++.++...|+.++.+..++.+++.+.   ...+.-..++..++.+|.+.|+.++|.++++
T Consensus       210 ~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          210 KDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            999998    455567899999999999994444556776665432   0122334578899999999999999999999


Q ss_pred             HHHH
Q psy875          256 ELKS  259 (480)
Q Consensus       256 ~~~~  259 (480)
                      .+.+
T Consensus       283 ~l~~  286 (306)
T 3dra_A          283 LLKS  286 (306)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.28  E-value=7.9e-11  Score=97.78  Aligned_cols=106  Identities=12%  Similarity=0.013  Sum_probs=94.5

Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV  190 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  190 (480)
                      +....+..+..+|.++...|+|++|+.+|++++...+.  ...++.++|.+|..+|+|++|+.+|++++++    .+...
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~   79 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVV----DPKYS   79 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCH
Confidence            44566788999999999999999999999999977654  4688999999999999999999999999999    44457


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                      .++.++|.++..+|+ +++|+.+|++++++...
T Consensus        80 ~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           80 KAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCC
Confidence            889999999999999 99999999999988543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.27  E-value=1.3e-10  Score=91.80  Aligned_cols=117  Identities=18%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      ..+..+|.+|... |++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+.  ...++
T Consensus        13 ~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~   83 (131)
T 2vyi_A           13 ERLKTEGNEQMKV-ENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred             HHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHHHH
Confidence            3344444442222 44444444444444432211      233444444444444444444444444433221  22344


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCC
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK  205 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (480)
                      ..+|.+|...|++++|+.+++++++..    +....++..+|.++...|+
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELD----PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHhc
Confidence            445555555555555555555555442    1223344445555554444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.27  E-value=4.5e-11  Score=100.58  Aligned_cols=126  Identities=14%  Similarity=0.251  Sum_probs=100.1

Q ss_pred             HhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH-
Q psy875           47 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKL-  125 (480)
Q Consensus        47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~-  125 (480)
                      +...|++++|+..++++++.    .+....++..+|.+|... |++++|+.+|++++.+.+..      ..++..+|.+ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l   88 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA----NPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGEN------AELYAALATVL   88 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH----CCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHH
Confidence            34678999999999999988    556667888999995554 99999999999999886532      4577889999 


Q ss_pred             HHhcCCh--HHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC
Q psy875          126 YKKHDNL--DSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN  185 (480)
Q Consensus       126 y~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~  185 (480)
                      |...|++  ++|+.+|++++...+.  ...++..+|.+|...|++++|+.+|++++++.+.+
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           89 YYQASQHMTAQTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHhcCCcchHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            8899998  9999999999877643  35778899999999999999999999999885543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.26  E-value=2.1e-11  Score=110.98  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHH
Q psy875           74 AVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS  153 (480)
Q Consensus        74 ~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~  153 (480)
                      .+..+..+|..|+.. |+|++|+.+|++|+...+.      ...++.++|.+|..+|++++|+.+|++++...+  ....
T Consensus         3 ~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~   73 (281)
T 2c2l_A            3 SAQELKEQGNRLFVG-RKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVK   73 (281)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHH
T ss_pred             hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHH
Confidence            356778899995555 9999999999999988543      256789999999999999999999999998764  4457


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      +++++|.+|..+|++++|+.+|++++++.++
T Consensus        74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            8999999999999999999999999998654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.25  E-value=2e-10  Score=92.82  Aligned_cols=106  Identities=10%  Similarity=-0.016  Sum_probs=92.5

Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      .+.....+..+|..+...|++++|+.+|++++...|  ....++..+|.+|..+|+|++|+.+|++++++.    |..+.
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~   87 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPR   87 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcH
Confidence            344567788999999999999999999999997665  445788999999999999999999999999994    44456


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                      ++.++|.++...|+ +++|+.+|++++++....
T Consensus        88 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           88 FPFHAAECHLQLGD-LDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Confidence            78999999999999 999999999999986543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.24  E-value=2.9e-10  Score=89.83  Aligned_cols=123  Identities=19%  Similarity=0.205  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcC-CCchH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQN-KDDKL  114 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~-~~~~~  114 (480)
                      .+.+++.+|.++...|++++|+.+|.++++.    .+....++..+|.+|.. .|++++|+.++++++...+.. .+...
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHH
Confidence            4678999999999999999999999999998    45556788999999555 499999999999999987754 33344


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK  166 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~  166 (480)
                      ...++.++|.+|...|++++|+.+|++++...+.   ......++.+....+
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT---PDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHH
Confidence            4778899999999999999999999998876653   344556666655444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.24  E-value=8.2e-12  Score=122.47  Aligned_cols=176  Identities=12%  Similarity=0.161  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      .+.+++.+|..+...|+|++|+++|++|+++    .+....++.++|.+|.. .|++++|+.++++|+++.+.      .
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~------~   73 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKK------Y   73 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTT------C
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCC------C
Confidence            4566788899999999999999999999999    66678899999999555 49999999999999988432      2


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH--HHhhccHHHHHHHHH-----------HHHhhh
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT--YKDNKQYNLAVDYFN-----------KELRLH  182 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~--y~~~~~~~~A~~~~~-----------~al~~~  182 (480)
                      ..++.++|.+|..+|++++|+.+|++++...+...  .++.+++.+  +..+|++++|++.++           +++++.
T Consensus        74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~  151 (477)
T 1wao_1           74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIE  151 (477)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccc
Confidence            56889999999999999999999999998776544  456667766  899999999999999           555553


Q ss_pred             hcC----cH---HHHHHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHHHcC
Q psy875          183 ARN----FP---EAVKTLGEIGDLYELQEKPF--ELVVSTHEKALDLARQNK  225 (480)
Q Consensus       183 ~~~----~~---~~~~~~~~l~~~~~~~~~~~--~~A~~~~~~al~~~~~~~  225 (480)
                      +..    .+   ........+...+...+. .  ..+...+.++.++.....
T Consensus       152 ~~~~~~~~~~~~itl~~l~~lie~l~~~~~-l~e~~v~~L~~~a~eil~~e~  202 (477)
T 1wao_1          152 DEYSGPKLEDGKVTISFMKELMQWYKDQKK-LHRKCAYQILVQVKEVLSKLS  202 (477)
T ss_dssp             TTCCSCCCGGGSCCHHHHHHHHHHHHTCCC-CCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccccccccccccHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHccCC
Confidence            321    11   112223334444444443 3  344446677766665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.24  E-value=2.7e-10  Score=113.80  Aligned_cols=184  Identities=9%  Similarity=0.023  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH------hhccHH-------HHHHHHHHHHH-hhhcCCCchHHHHHH
Q psy875           54 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL------QEKSFE-------IVQSTHEKALD-LARQNKDDKLIRTVM  119 (480)
Q Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~------~~~~~~-------~A~~~~~kAl~-~~~~~~~~~~~~~~~  119 (480)
                      .+++..|++++..    .|....+|..+|..+..      ..|+++       +|+..|++|+. +.+.      ...++
T Consensus       255 ~~a~~~y~~al~~----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------~~~l~  324 (530)
T 2ooe_A          255 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NMLLY  324 (530)
T ss_dssp             HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------CHHHH
T ss_pred             HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------cHHHH
Confidence            4788899999998    45556778888888443      258877       89999999996 4332      25678


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL  199 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~  199 (480)
                      ..+|.++...|++++|...|++++...+.. ...++..+|.++...|++++|+..|+++++..+.    ....+...+.+
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~----~~~~~~~~a~~  399 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART----RHHVYVTAALM  399 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC----CTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCccccC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC----chHHHHHHHHH
Confidence            899999999999999999999999876542 2358899999999999999999999999987332    22334444444


Q ss_pred             -HHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          200 -YELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       200 -~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                       +...|+ +++|...|+++++..      +....++..++.++...|++++|...++++..
T Consensus       400 ~~~~~~~-~~~A~~~~e~al~~~------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          400 EYYCSKD-KSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHTCC-HHHHHHHHHHHHHHH------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCC-hhHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence             335889 999999999999874      22346778889999999999999999999876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.23  E-value=1.2e-10  Score=110.25  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ...+..+..+|..++..|+|++|+.+|++++++ .   +...           .. ...+       ++.      ...+
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~-~---~~~~-----------~~-~~~~-------~~~------~~~~  270 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY-V---EGSR-----------AA-AEDA-------DGA------KLQP  270 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H---HHHH-----------HH-SCHH-------HHG------GGHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-h---hcCc-----------cc-cChH-------HHH------HHHH
Confidence            345556666666666666666666666666665 1   1100           00 0111       111      1234


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                      ....++.++|.+|..+|++++|+.++++++...+  ....+++++|.+|..+|++++|+.+|++++++.+    ....++
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P----~~~~~~  344 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP----EDKAIQ  344 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHH
Confidence            5578899999999999999999999999998764  4568899999999999999999999999999943    345678


Q ss_pred             HHHHHHHHHhCCchHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVS  212 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~  212 (480)
                      ..++.++..+++ ++++..
T Consensus       345 ~~l~~~~~~~~~-~~~a~k  362 (370)
T 1ihg_A          345 AELLKVKQKIKA-QKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHH
Confidence            888999988888 777654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.22  E-value=7.6e-11  Score=99.19  Aligned_cols=121  Identities=16%  Similarity=0.154  Sum_probs=102.2

Q ss_pred             hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH-HHhhcc
Q psy875           89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT-YKDNKQ  167 (480)
Q Consensus        89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~-y~~~~~  167 (480)
                      .|++++|+..+++++...+..      ..++..+|.+|...|++++|+.+|++++...+.  ...++..+|.+ |...|+
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~   94 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQ   94 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred             ccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCC
Confidence            388999999999999875432      467899999999999999999999999977754  35788999999 889999


Q ss_pred             H--HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          168 Y--NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       168 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      +  ++|+.+++++++.    .+....++..+|.++...|+ +++|+.+|++++++..
T Consensus        95 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A           95 HMTAQTRAMIDKALAL----DSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNS  146 (177)
T ss_dssp             CCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCC
T ss_pred             cchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCC
Confidence            9  9999999999998    34446789999999999999 9999999999987743

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.22  E-value=1.7e-10  Score=92.26  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      +..+..+|.++...|+|++|+.+|++++...+.  ...++.++|.+|..+|++++|+.++++++++    .+....++..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~   82 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHFF   82 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CchhHHHHHH
Confidence            567889999999999999999999999977644  4578999999999999999999999999998    3445678999


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~  223 (480)
                      +|.++...|+ +++|+.+|++++.+...
T Consensus        83 l~~~~~~~~~-~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           83 LGQCQLEMES-YDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-HHHHHHHHHHHHHHChh
Confidence            9999999999 99999999999998765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.22  E-value=2e-10  Score=92.84  Aligned_cols=99  Identities=10%  Similarity=-0.030  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      ...++.+|..+...|++++|+.+|++++..    .|.....|..+|.+|.. .|++++|+.+|++++.+.+..      .
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~------~   86 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCML----DHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDINE------P   86 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------T
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC------c
Confidence            344444555555555555555555555544    33334444445555222 255555555555555443211      1


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSD  146 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~  146 (480)
                      .++.++|.+|..+|++++|+.+|++++...
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           87 RFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            233444555555555555555555444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.20  E-value=1.5e-10  Score=109.55  Aligned_cols=128  Identities=19%  Similarity=0.219  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc--------------ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD--------------LCKDLASCYISLAQTYKDNKQYNLAVDYFNKEL  179 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al  179 (480)
                      ..+..+..+|..+...|+|++|+.+|++++...              ..+....++.++|.+|..+|+|++|+.++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            345678899999999999999999999998632              224557899999999999999999999999999


Q ss_pred             hhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q psy875          180 RLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQ  252 (480)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  252 (480)
                      ++    .+....+++.+|.+|..+|+ +++|+.+|++|+++.      +....+...++.++..+++++++.+
T Consensus       301 ~~----~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~------P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          301 EI----DPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIA------PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TT----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh----CchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            98    44557889999999999999 999999999999872      3345677788999998888887764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.19  E-value=3.4e-10  Score=88.49  Aligned_cols=118  Identities=21%  Similarity=0.361  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...++..+|.++...|++++|+.+|++++...+  ....++..+|.++...|++++|+.+++++++..    +....++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~   81 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWY   81 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CccHHHHH
Confidence            356788999999999999999999999987654  335788999999999999999999999999873    33356788


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHD  245 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  245 (480)
                      .+|.++...|+ +++|..++++++..      .+....++..++.++..+|
T Consensus        82 ~la~~~~~~~~-~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           82 NLGNAYYKQGD-YDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcC-HHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhcc
Confidence            99999999999 99999999999876      2333456667777776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.19  E-value=9.6e-10  Score=115.73  Aligned_cols=172  Identities=12%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875           43 LAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSI  122 (480)
Q Consensus        43 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l  122 (480)
                      +|.++...|+|++|..+|+++...     .. +     +... ....+++++|.++++++       .    ...+|.++
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~-----~~-A-----~~VL-ie~i~nldrAiE~Aerv-------n----~p~vWsqL 1111 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVN-----TS-A-----VQVL-IEHIGNLDRAYEFAERC-------N----EPAVWSQL 1111 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCH-----HH-H-----HHHH-HHHHhhHHHHHHHHHhc-------C----CHHHHHHH
Confidence            688899999999999999886422     00 0     0111 21224444444444322       0    02344455


Q ss_pred             HHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc------------------
Q psy875          123 KKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR------------------  184 (480)
Q Consensus       123 ~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~------------------  184 (480)
                      |..+...|++++|+.+|.++       +....|..+|.++.+.|+|++|+++|..|.+..+.                  
T Consensus      1112 AKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A         1112 AKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHH
Confidence            55555555555555555443       11233444555555555555555555443322100                  


Q ss_pred             ------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          185 ------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       185 ------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                            ..+. ...+..+|..++..|+ |++|..+|.++              ..+..++.++.++|++++|.+.++++.
T Consensus      1185 ele~fI~~~n-~ad~~~iGd~le~eg~-YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A         1185 ELEEFINGPN-NAHIQQVGDRCYDEKM-YDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred             HHHHHHhCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence                  0111 1346679999999999 99999999886              366789999999999999999998885


Q ss_pred             HH
Q psy875          259 SL  260 (480)
Q Consensus       259 ~l  260 (480)
                      ..
T Consensus      1249 n~ 1250 (1630)
T 1xi4_A         1249 ST 1250 (1630)
T ss_pred             CH
Confidence            43

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.18  E-value=4.1e-10  Score=88.91  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC---cHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN---FPEAVK  191 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~  191 (480)
                      .+.++..+|.++...|++++|+.+|++++...+  ....++.++|.+|...|++++|+.+++++++..+..   .+....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            356788999999999999999999999987664  345788999999999999999999999999985542   233378


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ++..+|.++...|+ +++|..+|+++++.
T Consensus        81 ~~~~la~~~~~~~~-~~~A~~~~~~~~~~  108 (131)
T 1elr_A           81 AYARIGNSYFKEEK-YKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-HHHHHHHHHHHHHh
Confidence            89999999999999 99999999999886

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.17  E-value=9e-10  Score=86.02  Aligned_cols=116  Identities=22%  Similarity=0.374  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC  154 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~  154 (480)
                      ..++..+|.+|... |++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+.  ...+
T Consensus         9 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~   79 (125)
T 1na0_A            9 AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEA   79 (125)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHH
Confidence            44556666663333 66666666666666553211      345566666677777777777777666654432  2355


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ  203 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~  203 (480)
                      +..+|.+|...|++++|+.+++++++..    +....++..+|.++...
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence            6667777777777777777777776662    23344555666665544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.17  E-value=6.3e-10  Score=88.94  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC  154 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~  154 (480)
                      +..+..+|.+|+.. |+|++|+.+|++++...+..      ..++.++|.+|..+|++++|+.+|++++...+  ....+
T Consensus         9 ~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~   79 (137)
T 3q49_B            9 AQELKEQGNRLFVG-RKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKA   79 (137)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred             HHHHHHHHHHHHHh-CcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHH
Confidence            33444455553222 55555555555555443211      23444555555555555555555555544332  22344


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      +.++|.+|..+|++++|+.+|++++++
T Consensus        80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           80 HFFLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            555555555555555555555555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.17  E-value=8.3e-10  Score=106.01  Aligned_cols=123  Identities=13%  Similarity=0.079  Sum_probs=106.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAV  190 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~  190 (480)
                      +...-+..+|+|++|+..+++++.+...      +..+.++.+||.+|..+|+|++|+.++++++++...    ++|..+
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            3344566789999999999999976433      567899999999999999999999999999988554    789999


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHc
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQN--KDDKLIRTVMRSMKKLYKKH  244 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~  244 (480)
                      ..+++||.+|..+|+ +++|+.+|++|+++.+..  .+.+....++.+|+.+...+
T Consensus       372 ~~l~nLa~~~~~~g~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGM-FPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999 999999999999988874  57888889988888877544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.16  E-value=2.1e-10  Score=107.32  Aligned_cols=158  Identities=11%  Similarity=0.058  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      ....+..+..+|..++..|+|++|+.+|++++.+    .+...        . +...+++.++...+             
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~--------~-~~~~~~~~~~~~~l-------------  228 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY----MGDDF--------M-FQLYGKYQDMALAV-------------  228 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH----SCHHH--------H-HTCCHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----hccch--------h-hhhcccHHHHHHHH-------------
Confidence            3456788999999999999999999999999998    33322        1 22234555443322             


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                        ...++.++|.+|..+|+|++|+.+|++++...+  ....+++++|.+|..+|+|++|+.+|++++++    .+....+
T Consensus       229 --~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a  300 (338)
T 2if4_A          229 --KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAI  300 (338)
T ss_dssp             --HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHH
Confidence              123678889999999999999999998887654  44578888999999999999999999998887    3445667


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                      +..++.+........+++...|.+++......
T Consensus       301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            77788875544432788888888888766543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.16  E-value=7.3e-10  Score=106.15  Aligned_cols=113  Identities=12%  Similarity=0.027  Sum_probs=97.6

Q ss_pred             HHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHH
Q psy875          125 LYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLG  194 (480)
Q Consensus       125 ~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~  194 (480)
                      .....|+|++|+..|++++.+...      +.++.++.+||.+|..+|+|++|+.++++++++...    ++|..+..+.
T Consensus       307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            334578999999999999876433      667899999999999999999999999999998654    7999999999


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQN--KDDKLIRTVMRSMK  238 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~  238 (480)
                      +||.+|..+|+ |++|+.+|++|+++.+..  .+.+....+..+|.
T Consensus       387 nLa~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          387 KLGRLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            99999999999 999999999999988764  46777777666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.15  E-value=8e-11  Score=104.82  Aligned_cols=206  Identities=6%  Similarity=-0.110  Sum_probs=150.2

Q ss_pred             hHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHhccccHHHHHHHHHHHHHHh-------hc
Q psy875            4 KIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISL-------AQTYKDNKQYNLAVDYFNKELRLH-------AR   69 (480)
Q Consensus         4 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al~~~-------~~   69 (480)
                      +-.|..|+. +..-......-.+.+.....+....++..+       +.+....+++.+++..+++++.+.       ..
T Consensus         8 ~~~~~~~~~-~~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~   86 (282)
T 4f3v_A            8 ASLFESAVS-MLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA   86 (282)
T ss_dssp             HHHHHHHHH-HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred             HHHHHHHhc-ccCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence            445666666 222111222233444555667788999999       899999999999999999999863       00


Q ss_pred             -cC---------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy875           70 -NF---------PEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSEL  139 (480)
Q Consensus        70 -~~---------~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~  139 (480)
                       ..         .........++.+ +...|+|++|...|...+..     .+ ... +.+.+|.++...++|++|+.+|
T Consensus        87 ~~g~y~~~~~~v~~r~dl~LayA~~-L~~~g~y~eA~~~l~~~~~~-----~p-~~~-~~~~~a~l~~~~~r~~dA~~~l  158 (282)
T 4f3v_A           87 IGGLYGDITYPVTSPLAITMGFAAC-EAAQGNYADAMEALEAAPVA-----GS-EHL-VAWMKAVVYGAAERWTDVIDQV  158 (282)
T ss_dssp             CCTTTCCCEEECSSHHHHHHHHHHH-HHHHTCHHHHHHHHTSSCCT-----TC-HHH-HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCcccccccccCCHhHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc-----CC-chH-HHHHHHHHHHHcCCHHHHHHHH
Confidence             00         0123344556778 55569999999888776542     12 223 7789999999999999999999


Q ss_pred             HHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          140 HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       140 ~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      +++...........+++++|.++..+|++++|+.+|++++.-. .++.....+++++|.++..+|+ .++|...|++++.
T Consensus       159 ~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a~a  236 (282)
T 4f3v_A          159 KSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGN-ESAAVALLEWLQT  236 (282)
T ss_dssp             TTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred             HHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Confidence            9776543211224689999999999999999999999998431 1122267789999999999999 9999999999987


Q ss_pred             H
Q psy875          220 L  220 (480)
Q Consensus       220 ~  220 (480)
                      .
T Consensus       237 ~  237 (282)
T 4f3v_A          237 T  237 (282)
T ss_dssp             H
T ss_pred             c
Confidence            6

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.15  E-value=3.3e-11  Score=113.58  Aligned_cols=181  Identities=17%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-----
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-----  112 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-----  112 (480)
                      .++..+|.++...|++++|++.|.++-.         ...|..++.. ....|+|++|+.+++.+.+..+...-.     
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika~D---------~~~y~~V~~~-ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~  102 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKADD---------PSSYMEVVQA-ANTSGNWEELVKYLQMARKKARESYVETELIF  102 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCC---------HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence            4788999999999999999999976422         2255666777 445588999998888887532110000     


Q ss_pred             -----------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875          113 -----------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYF  175 (480)
Q Consensus       113 -----------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~  175 (480)
                                       +. ..++.++|..+...|+|++|..+|.++          ..+..+|.++.++|+|++|++.+
T Consensus       103 ~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~  171 (449)
T 1b89_A          103 ALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGA  171 (449)
T ss_dssp             ------CHHHHTTTTTCC-----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHH
Confidence                             00 013445555555555555555555543          12444555555555555555555


Q ss_pred             HHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875          176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       176 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      .++.         .+.+|..++.++...|+ ++.|..+...       ....+.   -+..+..+|.+.|++++|..+++
T Consensus       172 ~KA~---------~~~~Wk~v~~aCv~~~e-f~lA~~~~l~-------L~~~ad---~l~~lv~~Yek~G~~eEai~lLe  231 (449)
T 1b89_A          172 RKAN---------STRTWKEVCFACVDGKE-FRLAQMCGLH-------IVVHAD---ELEELINYYQDRGYFEELITMLE  231 (449)
T ss_dssp             HHHT---------CHHHHHHHHHHHHHTTC-HHHHHHTTTT-------TTTCHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcC---------CchhHHHHHHHHHHcCc-HHHHHHHHHH-------HHhCHh---hHHHHHHHHHHCCCHHHHHHHHH
Confidence            5551         12344555555555555 5555333322       111121   13357789999999999999998


Q ss_pred             HHHH
Q psy875          256 ELKS  259 (480)
Q Consensus       256 ~~~~  259 (480)
                      .+..
T Consensus       232 ~aL~  235 (449)
T 1b89_A          232 AALG  235 (449)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            7754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.14  E-value=8.6e-12  Score=122.34  Aligned_cols=135  Identities=12%  Similarity=0.081  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      .+.++.++|..+...|+|++|+.+|++++...+  ....++.++|.+|..+|+|++|+.++++++++    .+..+.++.
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~   78 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYY   78 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHH
Confidence            345567788999999999999999999997764  44688999999999999999999999999998    445577899


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL--YKKHDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       195 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~l~~  262 (480)
                      ++|.+|..+|+ +++|+.+|++++++..      ....++..++.+  +.++|++++|...+++...+..
T Consensus        79 ~lg~~~~~~g~-~~eA~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~  141 (477)
T 1wao_1           79 RRAASNMALGK-FRAALRDYETVVKVKP------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  141 (477)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHHHHHST------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTT
T ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHh
Confidence            99999999999 9999999999998732      222345566666  8889999999999876444333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.13  E-value=2.2e-09  Score=82.89  Aligned_cols=99  Identities=9%  Similarity=0.064  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +..++.+|..+...|++++|+.+|++++..    .+....++..+|.+|.. .|++++|+.++++++...+.      ..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~------~~   72 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPD------WG   72 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcc------cH
Confidence            344555666666666666666666666555    33334455555665333 35666666666666554321      12


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSD  146 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~  146 (480)
                      .++.++|.+|...|++++|+.+|++++...
T Consensus        73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            344555555555555555555555555444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.13  E-value=4.5e-10  Score=107.59  Aligned_cols=110  Identities=12%  Similarity=0.089  Sum_probs=94.8

Q ss_pred             hhccHHHHHHHHHHHHHhhhc--CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHH
Q psy875           88 QEKSFEIVQSTHEKALDLARQ--NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLA  159 (480)
Q Consensus        88 ~~~~~~~A~~~~~kAl~~~~~--~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la  159 (480)
                      ..|+|++|+..+++++.+..+  .++++..+.++.+||.+|..+|+|++|+.++++++.+...      |.++..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            348899999999999987654  4567899999999999999999999999999999876543      77899999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHHHHH
Q psy875          160 QTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLGEIG  197 (480)
Q Consensus       160 ~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~  197 (480)
                      .+|..+|+|++|+.+|++|+++...    ++|.......+|.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999998654    6777776666553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=7.2e-10  Score=85.65  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      +..+..+|..+...|++++|+.+|++++...+.  ...++..+|.+|...|++++|+.+++++++..    +....++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~   77 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSR   77 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----cccHHHHHH
Confidence            457789999999999999999999999876643  35789999999999999999999999999983    344678899


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +|.++...|+ +++|..+++++++.
T Consensus        78 ~a~~~~~~~~-~~~A~~~~~~~~~~  101 (118)
T 1elw_A           78 KAAALEFLNR-FEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhh-HHHHHHHHHHHHHc
Confidence            9999999999 99999999999865

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.12  E-value=2.9e-10  Score=88.94  Aligned_cols=97  Identities=15%  Similarity=0.068  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      .+..+|..+...|++++|+..|++++...|  ....++..+|.++..+|++++|+.+|++++++    .|....++..+|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~la   92 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHH
Confidence            357899999999999999999999997765  44578999999999999999999999999999    444567899999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                      .++...|+ +++|+..+++++++.
T Consensus        93 ~~~~~~g~-~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           93 VSHTNEHN-ANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHC--
T ss_pred             HHHHHcCC-HHHHHHHHHHHHHhC
Confidence            99999999 999999999998763

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.11  E-value=8.2e-10  Score=106.05  Aligned_cols=121  Identities=7%  Similarity=-0.044  Sum_probs=103.7

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhhhc--CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHH
Q psy875           81 IGDLYELQEKSFEIVQSTHEKALDLARQ--NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLA  152 (480)
Q Consensus        81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~--~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~  152 (480)
                      +..+ ..+ |+|++|+..+++++.+..+  .++++..+.++.++|.+|..+|+|++|+.++++++.+...      |.++
T Consensus       294 ie~~-~~~-g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          294 IEEL-KAH-WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHH-HHT-TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHH-Hhh-ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            3444 555 8999999999999987544  3466889999999999999999999999999999876433      6789


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHHHh
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYELQ  203 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~  203 (480)
                      ..+++||.+|..+|++++|+.+|++|+++...    ++|....++.+|+.+...+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998654    7888888888888887654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=8.2e-10  Score=89.40  Aligned_cols=102  Identities=17%  Similarity=0.086  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                      .....+..+|..+...|++++|+.+|++++...+.. ....++.++|.+|...|++++|+.+++++++..+    ....+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~  101 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----GDVKA  101 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS----CCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc----cCHHH
Confidence            346778899999999999999999999999876543 2368899999999999999999999999999833    33678


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +..+|.++...|+ +++|+.+|++++.+
T Consensus       102 ~~~~a~~~~~~~~-~~~A~~~~~~al~~  128 (148)
T 2dba_A          102 LYRRSQALEKLGR-LDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHHc
Confidence            8999999999999 99999999999876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=6e-10  Score=87.14  Aligned_cols=93  Identities=13%  Similarity=0.045  Sum_probs=42.2

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      +.+|..+...|++++|+..|+++++.    .|....++..+|.+| ...|++++|+.+|++|+++.+..      ..++.
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~------~~~~~   89 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKD------IAVHA   89 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence            34444444455555555555555444    333344444445552 22245555555555554442211      22344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhc
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLS  144 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~  144 (480)
                      ++|.+|...|++++|+.+|++++.
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           90 ALAVSHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444444444444444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=1.1e-09  Score=86.44  Aligned_cols=116  Identities=13%  Similarity=0.051  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCK-DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      ++..+|..+...|++++|+..|++++...+.. ....++..+|.+|...|+|++|+.+|+++++..+.+ +....++..+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~l   82 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKL   82 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHH
Confidence            45788999999999999999999999876653 335788999999999999999999999999985432 3347789999


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK  238 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  238 (480)
                      |.++..+|+ +++|+.+|++++...   ++.+....+...+.
T Consensus        83 a~~~~~~g~-~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~  120 (129)
T 2xev_A           83 GLSQYGEGK-NTEAQQTLQQVATQY---PGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHH
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHHHC---CCChHHHHHHHHHH
Confidence            999999999 999999999998763   33444334433333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=2.1e-09  Score=84.80  Aligned_cols=105  Identities=14%  Similarity=0.062  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      +++.+|..+...|+|++|+..|+++++. .++.+....++..+|.+|+.. |++++|+.+|++++...+.   ......+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~---~~~~~~~   78 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPT---HDKAAGG   78 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT---STTHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCC---CcccHHH
Confidence            4566666777777777777777777666 333444445666667764333 6777777777776665432   2223445


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLC  148 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~  148 (480)
                      +..+|.+|..+|++++|+.+|++++...|.
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            666666666666666666666666655543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.08  E-value=1.8e-10  Score=107.73  Aligned_cols=136  Identities=13%  Similarity=0.089  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccH---------------HHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL---------------ASCYISLAQTYKDNKQYNLAVDYFNK  177 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~---------------~~~~~~la~~y~~~~~~~~A~~~~~~  177 (480)
                      ...+..+..+|..+...|+|++|+.+|++++...+....               ..++.++|.+|..+|+|++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345677889999999999999999999999876654210               13899999999999999999999999


Q ss_pred             HHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHH
Q psy875          178 ELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY-KKHDKFTELEQIKTE  256 (480)
Q Consensus       178 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~  256 (480)
                      ++++    .+....+++++|.+|..+|+ +++|+.+|++++++.      +....++..|+.+. ...+..+++...+++
T Consensus       256 al~~----~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~  324 (338)
T 2if4_A          256 VLTE----EEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYA------PDDKAIRRELRALAEQEKALYQKQKEMYKG  324 (338)
T ss_dssp             HHHH----CTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC--------------------------------------
T ss_pred             HHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998    44557889999999999999 999999999998873      33455666777774 445566777777766


Q ss_pred             HHH
Q psy875          257 LKS  259 (480)
Q Consensus       257 ~~~  259 (480)
                      +..
T Consensus       325 ~l~  327 (338)
T 2if4_A          325 IFK  327 (338)
T ss_dssp             ---
T ss_pred             hhC
Confidence            654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=2.8e-09  Score=86.19  Aligned_cols=87  Identities=15%  Similarity=0.079  Sum_probs=39.1

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~  169 (480)
                      |++++|+.+|++++...+   +......++.++|.+|...|++++|+.++++++...+.  ...++..+|.+|..+|+++
T Consensus        42 ~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~  116 (148)
T 2dba_A           42 GDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKALYRRSQALEKLGRLD  116 (148)
T ss_dssp             TCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHHHHHHHHHHHHcCCHH
Confidence            444444444444443322   12222334444444444444555555444444433322  2344445555555555555


Q ss_pred             HHHHHHHHHHhh
Q psy875          170 LAVDYFNKELRL  181 (480)
Q Consensus       170 ~A~~~~~~al~~  181 (480)
                      +|+.+|++++++
T Consensus       117 ~A~~~~~~al~~  128 (148)
T 2dba_A          117 QAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            555555555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.03  E-value=1.6e-09  Score=82.84  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      .+++.+|.++...|++++|+.+|+++++.    .+....++..+|.+|... |++++|+.++++++...+.    .....
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~----~~~~~   77 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIED----EYNKD   77 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCC----TTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcc----cchHH
Confidence            34566777777777777777777777777    444455667777774443 7777777777777766433    01134


Q ss_pred             HHHHHHHHHHhc-CChHHHHHHHHHHhcccc
Q psy875          118 VMRSIKKLYKKH-DNLDSACSELHTVLSSDL  147 (480)
Q Consensus       118 ~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~  147 (480)
                      ++.++|.+|..+ |++++|++++++++...+
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            667777777777 777777777777765554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.01  E-value=6.9e-08  Score=88.84  Aligned_cols=206  Identities=12%  Similarity=0.024  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK-SFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ..++..+..+....+..++|++++.+++.+    .+....+|+..+.+ ...++ .+++++.++.+++...++.      
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~i-L~~l~~~l~eEL~~~~~~L~~nPKn------  122 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSL-LTSLNKSLEDELRLMNEFAVQNLKS------  122 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHTTCCC------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHhCCCc------
Confidence            344444555555555556677777776666    55556666666666 34445 4666766666666554332      


Q ss_pred             HHHHHHHHHHHHhc-C-ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH--------HHHHHHHHHHhhhhcC
Q psy875          116 RTVMRSIKKLYKKH-D-NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN--------LAVDYFNKELRLHARN  185 (480)
Q Consensus       116 ~~~~~~l~~~y~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~--------~A~~~~~~al~~~~~~  185 (480)
                      ..++...+.+...+ + ++++++.++.+++...+..  ..++...+.+....+.++        +++++++++++.    
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~----  196 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV----  196 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh----
Confidence            34555556666655 5 6666666666666554432  245555566666666555        666666666665    


Q ss_pred             cHHHHHHHHHHHHHHHHhCC------chHHHHHHHHHHHHH--------------HHHcCCc------------------
Q psy875          186 FPEAVKTLGEIGDLYELQEK------PFELVVSTHEKALDL--------------ARQNKDD------------------  227 (480)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~------~~~~A~~~~~~al~~--------------~~~~~~~------------------  227 (480)
                      .+....+|.+.+.+....++      .++++++++++++.+              ....+..                  
T Consensus       197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~  276 (349)
T 3q7a_A          197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP  276 (349)
T ss_dssp             CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred             CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence            33334556666666655553      035566666665521              1111110                  


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          228 ----------------------KLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       228 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                                            ..-..++..|+++|..+|+.++|.+.++...+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                                  12344677899999999999999988887654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.00  E-value=1.4e-09  Score=83.21  Aligned_cols=102  Identities=12%  Similarity=-0.039  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC  154 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~  154 (480)
                      ..++..+|.+| ...|++++|+.++++++...+..      ..++.++|.+|...|++++|+.+|++++...+......+
T Consensus         6 ~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            6 PEEYYLEGVLQ-YDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             TTGGGGHHHHH-HSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence            34556778884 44488888888888888764322      346778888888888888888888888766544114567


Q ss_pred             HHHHHHHHHhh-ccHHHHHHHHHHHHhhhh
Q psy875          155 YISLAQTYKDN-KQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       155 ~~~la~~y~~~-~~~~~A~~~~~~al~~~~  183 (480)
                      +..+|.+|... |++++|++++++++...+
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           79 WAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            78888888888 888888888888776643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.99  E-value=1e-09  Score=85.21  Aligned_cols=92  Identities=11%  Similarity=0.017  Sum_probs=67.8

Q ss_pred             hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875           89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus        89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~  168 (480)
                      .|++++|+.+|++|+++.   .+.+....++.++|.+|..+|++++|+.+|++++...|..  ..++.++|.+|..+|++
T Consensus         3 ~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             ----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH
T ss_pred             CCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCH
Confidence            377888888888888752   1234556778888888888888888888888888766543  57788888888888888


Q ss_pred             HHHHHHHHHHHhhhhcC
Q psy875          169 NLAVDYFNKELRLHARN  185 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~  185 (480)
                      ++|+.+++++++..+.+
T Consensus        78 ~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            88888888888875443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.99  E-value=9.6e-10  Score=85.41  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=74.2

Q ss_pred             hcCChHHHHHHHHHHhcccc-cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875          128 KHDNLDSACSELHTVLSSDL-CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP  206 (480)
Q Consensus       128 ~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (480)
                      .+|++++|+.+|++++...+ .+....++.++|.+|..+|+|++|+.+|++++++.    |....++.++|.++...|+ 
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~-   76 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVFYAMVLYNLGR-   76 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC-
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCC-
Confidence            46899999999999997631 25567889999999999999999999999999993    4447789999999999999 


Q ss_pred             hHHHHHHHHHHHHHH
Q psy875          207 FELVVSTHEKALDLA  221 (480)
Q Consensus       207 ~~~A~~~~~~al~~~  221 (480)
                      +++|+.++++++...
T Consensus        77 ~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           77 YEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.98  E-value=3.2e-10  Score=106.91  Aligned_cols=190  Identities=14%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHh---------------hc---------cCchHHHHHHHHHHHHHHhhccHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLH---------------AR---------NFPEAVKTLGEIGDLYELQEKSFE   93 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------~~---------~~~~~~~~~~~lg~~y~~~~~~~~   93 (480)
                      ..|..++..+...|+|++|+++++.+++..               .+         ..+. ..+|..+|..|+.. |.|+
T Consensus        62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~~-g~ye  139 (449)
T 1b89_A           62 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDE-KMYD  139 (449)
T ss_dssp             -----------------------------------------------CHHHHTTTTTCC------------------CTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHHc-CCHH
Confidence            367788888888999999999888887431               00         0111 13778888885555 9999


Q ss_pred             HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHH-----------------
Q psy875           94 IVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYI-----------------  156 (480)
Q Consensus        94 ~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~-----------------  156 (480)
                      +|+.+|.++              ..+..+|.++.++|+|++|++.|+++.....-.....++.                 
T Consensus       140 eA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~  205 (449)
T 1b89_A          140 AAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV  205 (449)
T ss_dssp             THHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT
T ss_pred             HHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence            999999866              3567899999999999999999999842211011111122                 


Q ss_pred             ------HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          157 ------SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ--EKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       157 ------~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                            .+...|.+.|++++|+.++++++.+    .+....++..+|.+|.+-  ++ ..++++.|.+.+.+      ++
T Consensus       206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l----e~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini------~k  274 (449)
T 1b89_A          206 HADELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNI------PK  274 (449)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCH------HH
T ss_pred             CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcC------cH
Confidence                  2335666666666666666666655    233344455555544332  22 33333333322222      33


Q ss_pred             -----HHHHHHHHHHHHHHHcCChHHHHHHH
Q psy875          229 -----LIRTVMRSMKKLYKKHDKFTELEQIK  254 (480)
Q Consensus       229 -----~~~~~~~~l~~~~~~~g~~~~A~~~~  254 (480)
                           .....+..+..+|...++++.|....
T Consensus       275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence                 23345567888888899998887655

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.98  E-value=2.1e-09  Score=86.32  Aligned_cols=88  Identities=15%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             ccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           49 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSF----------EIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      +.++|++|++.+++++++    .|..+.+|+++|.+ +..++++          ++|+..|++|+++.+.      ...+
T Consensus        14 r~~~feeA~~~~~~Ai~l----~P~~aea~~n~G~~-l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A   82 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS----NPLDADNLTRWGGV-LLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             HHhHHHHHHHHHHHHHHH----CCCCHHHHHHHHHH-HHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHH
Confidence            457899999999999999    78888899999999 5555765          4777777777777443      2556


Q ss_pred             HHHHHHHHHhcC-----------ChHHHHHHHHHHhcccc
Q psy875          119 MRSIKKLYKKHD-----------NLDSACSELHTVLSSDL  147 (480)
Q Consensus       119 ~~~l~~~y~~~~-----------~~~~A~~~~~~~l~~~~  147 (480)
                      ++++|.+|..+|           ++++|+.+|++++.+.|
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            777777777664           55555555555555544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.97  E-value=1.3e-07  Score=86.66  Aligned_cols=201  Identities=8%  Similarity=0.015  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHH
Q psy875           36 LASCYISLAQTYKDNKQ----------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK--SFEIVQSTHEKAL  103 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~~A~~~~~kAl  103 (480)
                      ...+++..+.+....+.          +++++.++.+++..    .|....+|+..+.+ ...++  .+++++.++.+++
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~wl-L~~l~~~~~~~EL~~~~k~l  137 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWL-LSRLPEPNWARELELCARFL  137 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHCSSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HhccCcccHHHHHHHHHHHH
Confidence            34567777777766655          78999999999988    77778888999999 55557  4899999999999


Q ss_pred             HhhhcCCCchHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh--------------ccH
Q psy875          104 DLARQNKDDKLIRTVMRSIKKLYKKHDN-LDSACSELHTVLSSDLCKDLASCYISLAQTYKDN--------------KQY  168 (480)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~y~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~--------------~~~  168 (480)
                      +..++.      ..++...+.+....|. ++++++++.+++...+..  ..++...+.+....              +.+
T Consensus       138 ~~dprN------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~  209 (331)
T 3dss_A          138 EADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLHPQPDSGPQGRLPENVL  209 (331)
T ss_dssp             HHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHSCCC------CCCHHHH
T ss_pred             HhCCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhhccccccccccchHHH
Confidence            875433      4577888899999998 599999999999776544  47788888888776              679


Q ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh-----------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy875          169 NLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ-----------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSM  237 (480)
Q Consensus       169 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  237 (480)
                      +++++++.+++.+.    |....+|+.+..++...           +. ++++++++++.+++..   +.   ..++..+
T Consensus       210 ~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~-l~~el~~~~elle~~p---d~---~w~l~~~  278 (331)
T 3dss_A          210 LKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSGRCELSVEKSTV-LQSELESCKELQELEP---EN---KWCLLTI  278 (331)
T ss_dssp             HHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSCGGGCCHHHHHH-HHHHHHHHHHHHHHCT---TC---HHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccCccccchHHHHH-HHHHHHHHHHHHhhCc---cc---chHHHHH
Confidence            99999999999994    44456676555555444           45 7888888888887743   22   3333333


Q ss_pred             HHHH---HHcCChHHHHHHHHHHHHH
Q psy875          238 KKLY---KKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       238 ~~~~---~~~g~~~~A~~~~~~~~~l  260 (480)
                      +.+.   ...|..++...++.+..++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          279 ILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHh
Confidence            3332   2456777888888777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=9e-09  Score=102.69  Aligned_cols=176  Identities=7%  Similarity=-0.056  Sum_probs=145.1

Q ss_pred             cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS----------FEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      ....++|++.+.+++.+    .|....+|+..+.+ ...+++          +++++.++.+++...++.      ..++
T Consensus        42 ~~~~eeal~~~~~~l~~----nP~~~taW~~R~~~-l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------y~aW  110 (567)
T 1dce_A           42 GELDESVLELTSQILGA----NPDFATLWNCRREV-LQHLETEKSPEESAALVKAELGFLESCLRVNPKS------YGTW  110 (567)
T ss_dssp             TCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred             CCCCHHHHHHHHHHHHH----CchhHHHHHHHHHH-HHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC------HHHH
Confidence            34456889999999999    88888899999999 555577          999999999999875543      5688


Q ss_pred             HHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          120 RSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       120 ~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      ...+.+...++  ++++|++++.++++..+..  ..++...+.+....| .+++++++++++++.    .+....+|.+.
T Consensus       111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~----~p~n~saW~~r  184 (567)
T 1dce_A          111 HHRCWLLSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFSNYSSWHYR  184 (567)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----TCCCHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCCCccHHHHH
Confidence            89999999999  6799999999999877544  477888999999999 999999999999988    44556789999


Q ss_pred             HHHHHHh--------------CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875          197 GDLYELQ--------------EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE  249 (480)
Q Consensus       197 ~~~~~~~--------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  249 (480)
                      +.++...              +. +++|++++.+|+.+      .|....++..++.++.+.+++++
T Consensus       185 ~~ll~~l~~~~~~~~~~~~~~~~-~~eel~~~~~ai~~------~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          185 SCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFT------DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHH-HHHHHHHHHHHHHH------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHhhcccccccccccccHHH-HHHHHHHHHHHHhh------CCCCccHHHHHHHHHhcCCCccc
Confidence            9998885              56 79999999999887      33344567777888888877554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.97  E-value=3.9e-09  Score=84.81  Aligned_cols=90  Identities=11%  Similarity=0.183  Sum_probs=76.2

Q ss_pred             HhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhcccccccHHHHHH
Q psy875           87 LQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNL----------DSACSELHTVLSSDLCKDLASCYI  156 (480)
Q Consensus        87 ~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~----------~~A~~~~~~~l~~~~~~~~~~~~~  156 (480)
                      .+.+.|++|++.+++|+++.+..      ..++.++|.++..++++          ++|+..|++++.+.|  ....+++
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~   84 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVW   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHH
Confidence            34578999999999999986543      66888999999999875          599999999998875  4568899


Q ss_pred             HHHHHHHhhc-----------cHHHHHHHHHHHHhhhhc
Q psy875          157 SLAQTYKDNK-----------QYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       157 ~la~~y~~~~-----------~~~~A~~~~~~al~~~~~  184 (480)
                      ++|.+|..+|           ++++|+.+|++|+++.++
T Consensus        85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            9999999885           899999999999999443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.95  E-value=8.6e-10  Score=84.49  Aligned_cols=100  Identities=6%  Similarity=0.021  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHH
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIR  116 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~  116 (480)
                      +.+++.+|.++...|+|++|+++|++++++    .+....++.++|.+|. ..|++++|+.++++++.+.+..++.....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~   78 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            457788888888888888888888888888    5555677788888844 44888888888888888776655555567


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHT  141 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~  141 (480)
                      .++..+|.++..+|+++.|+..+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            7788888888888887777665554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.94  E-value=8.3e-08  Score=87.37  Aligned_cols=189  Identities=8%  Similarity=-0.073  Sum_probs=148.1

Q ss_pred             HHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q psy875           45 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK--SFEIVQSTHEKALDLARQNKDDKLIRTVMRSI  122 (480)
Q Consensus        45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l  122 (480)
                      .+.......++|+..+.+++.+    .|....+|+..+.+ ...++  .+++++.++.+++...++.      ..++...
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~-L~~l~~~~~~eeL~~~~~~L~~nPk~------y~aW~~R  109 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINE----LASHYTIWIYRFNI-LKNLPNRNLYDELDWCEEIALDNEKN------YQIWNYR  109 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHTCTTSCHHHHHHHHHHHHHHCTTC------CHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHCccc------HHHHHHH
Confidence            3344445557999999999999    88888999999999 66667  9999999999999886544      3455666


Q ss_pred             HHHH----Hhc---CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH--HHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          123 KKLY----KKH---DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN--LAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       123 ~~~y----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                      +.+.    ...   +++++++.++.+++...++.  ..++...+.+....|+++  +++++++++++.    .+....+|
T Consensus       110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn--y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~N~sAW  183 (306)
T 3dra_A          110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN--HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLKNNSAW  183 (306)
T ss_dssp             HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTTCHHHH
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCCCHHHH
Confidence            6666    556   79999999999999776544  477888999999999998  999999999998    45556788


Q ss_pred             HHHHHHHHHhCCc-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Q psy875          194 GEIGDLYELQEKP-----FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE-LEQIKTE  256 (480)
Q Consensus       194 ~~l~~~~~~~~~~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~  256 (480)
                      .+.+.+....+..     ++++++++.+++..      .+.-..++..++.++.+.|+..+ ...+..+
T Consensus       184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVK------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHHHHh------CCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            8888888877641     78889999888877      44455677788888888888544 3334433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.92  E-value=1e-07  Score=87.27  Aligned_cols=154  Identities=6%  Similarity=-0.056  Sum_probs=125.1

Q ss_pred             ccccHH-HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           49 DNKQYN-LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS----------FEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        49 ~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      ..|+++ +|+.++.+++.+    .|....+|+..+.+ ...++.          +++++.++.+++...++.      ..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~i-L~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------y~  109 (331)
T 3dss_A           41 QAGELDESVLELTSQILGA----NPDFATLWNCRREV-LQHLETEKSPEESAALVKAELGFLESCLRVNPKS------YG  109 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHH-HHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------HH
Confidence            345655 899999999998    78878888888888 444454          688899999998775433      56


Q ss_pred             HHHHHHHHHHhcCC--hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDN--LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ-YNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       118 ~~~~l~~~y~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ++...+.+...+++  +++++.++.+++...+..  ..++...+.+....|. ++++++++.++++.    .+....+|.
T Consensus       110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN--y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~----~p~N~SAW~  183 (331)
T 3dss_A          110 TWHHRCWLLSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFSNYSSWH  183 (331)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CSCCHHHHH
T ss_pred             HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----CCCCHHHHH
Confidence            78888999999984  899999999999877554  4678888888889998 69999999999998    455567888


Q ss_pred             HHHHHHHHh--------------CCchHHHHHHHHHHHHH
Q psy875          195 EIGDLYELQ--------------EKPFELVVSTHEKALDL  220 (480)
Q Consensus       195 ~l~~~~~~~--------------~~~~~~A~~~~~~al~~  220 (480)
                      +.+.+....              +. ++++++++.+++.+
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~  222 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFT  222 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHh
Confidence            899888887              56 88999999999877

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.89  E-value=1.7e-08  Score=77.89  Aligned_cols=88  Identities=17%  Similarity=0.183  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHH
Q psy875          133 DSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVS  212 (480)
Q Consensus       133 ~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  212 (480)
                      ++|+.+|++++...+.  ...++.++|.+|...|++++|+.+|++++++    .+....++..+|.++...|+ +++|+.
T Consensus         2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~-~~~A~~   74 (115)
T 2kat_A            2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDF----DPTYSVAWKWLGKTLQGQGD-RAGARQ   74 (115)
T ss_dssp             CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC-HHHHHH
T ss_pred             hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHcCC-HHHHHH
Confidence            3567777777765543  3467788888888888888888888888877    33445677888888888888 888888


Q ss_pred             HHHHHHHHHHHcCCc
Q psy875          213 THEKALDLARQNKDD  227 (480)
Q Consensus       213 ~~~~al~~~~~~~~~  227 (480)
                      +|++++.+....++.
T Consensus        75 ~~~~al~~~~~~~~~   89 (115)
T 2kat_A           75 AWESGLAAAQSRGDQ   89 (115)
T ss_dssp             HHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhccccccH
Confidence            888888776554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.88  E-value=1.2e-07  Score=85.59  Aligned_cols=173  Identities=10%  Similarity=-0.017  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--ccHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--KDLA  152 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--~~~~  152 (480)
                      ..++..+|.+|... |++++|++++.+++...+.    .....++..++.+|..+|+.+.|.+.+++.....++  ..--
T Consensus       100 ~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d  174 (310)
T 3mv2_B          100 PYELYLLATAQAIL-GDLDKSLETCVEGIDNDEA----EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN  174 (310)
T ss_dssp             HHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCC----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch
Confidence            34456889996665 9999999999998754321    234567788999999999999999999988766552  0011


Q ss_pred             HHHHHH--HHHHHhhc--cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC--
Q psy875          153 SCYISL--AQTYKDNK--QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD--  226 (480)
Q Consensus       153 ~~~~~l--a~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--  226 (480)
                      .+...|  |.+....|  ++.+|..+|++..+..+.  ......+.+   ++..+|+ +++|...++..++.....++  
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~~~~lLln---~~~~~g~-~~eAe~~L~~l~~~~p~~~~k~  248 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WKTQLGLLN---LHLQQRN-IAEAQGIVELLLSDYYSVEQKE  248 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHH---HHHHHTC-HHHHHHHHHHHHSHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--cccHHHHHH---HHHHcCC-HHHHHHHHHHHHHhcccccccc
Confidence            233444  44455556  999999999997665321  112333333   8999999 99999999977766543222  


Q ss_pred             --cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          227 --DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       227 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                        .+.-..++.++..+...+|+  +|.++..++.++
T Consensus       249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence              13356778788888888897  788887777653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.84  E-value=4.8e-09  Score=80.21  Aligned_cols=93  Identities=5%  Similarity=0.018  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRT  232 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  232 (480)
                      ..+..+|.++...|+|++|+.+|++++++.    |....++.++|.++..+|+ +++|+..+++++.+.....+......
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            344555555555555555555555555552    2223445555555555555 55555555555544322222223344


Q ss_pred             HHHHHHHHHHHcCChHHH
Q psy875          233 VMRSMKKLYKKHDKFTEL  250 (480)
Q Consensus       233 ~~~~l~~~~~~~g~~~~A  250 (480)
                      ++..++.++..+|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHhHhhh
Confidence            455555555555544433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.83  E-value=6e-08  Score=77.55  Aligned_cols=110  Identities=18%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh--
Q psy875           51 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK--  128 (480)
Q Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~--  128 (480)
                      +++++|+++|+++.+. .   ...+  +  +|.+| ...+..++|+.+|++|.+.-        ...++.++|.+|..  
T Consensus         9 ~d~~~A~~~~~~aa~~-g---~~~a--~--lg~~y-~~g~~~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~   71 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-N---EMFG--C--LSLVS-NSQINKQKLFQYLSKACELN--------SGNGCRFLGDFYENGK   71 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-T---CTTH--H--HHHHT-CTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCS
T ss_pred             cCHHHHHHHHHHHHcC-C---CHhh--h--HHHHH-HcCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHcCC
Confidence            5677788888777766 2   1111  1  77774 33366777778887777641        14566777777777  


Q ss_pred             --cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhh
Q psy875          129 --HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRL  181 (480)
Q Consensus       129 --~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~  181 (480)
                        .+++++|+.+|+++...    ....+.++||.+|..    .+++++|+.+|+++.+.
T Consensus        72 g~~~d~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           72 YVKKDLRKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence              67788888888777643    234667777777777    77777888877777665

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.81  E-value=3.3e-08  Score=72.34  Aligned_cols=86  Identities=21%  Similarity=0.326  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                      +....++..+|.++...|++++|+.+|++++...+.  ...++.++|.+|...|++++|+.++++++++    .|....+
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~   79 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEA   79 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCCHHH
Confidence            345678889999999999999999999999976643  4578899999999999999999999999998    3444677


Q ss_pred             HHHHHHHHHHhC
Q psy875          193 LGEIGDLYELQE  204 (480)
Q Consensus       193 ~~~l~~~~~~~~  204 (480)
                      +.++|.++...|
T Consensus        80 ~~~l~~~~~~~g   91 (91)
T 1na3_A           80 KQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            888998887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.81  E-value=3.8e-08  Score=73.79  Aligned_cols=76  Identities=21%  Similarity=0.282  Sum_probs=58.3

Q ss_pred             ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                      |....+++.+|.+|..+|+|++|+.+|++++++.    |....++..+|.+|...|+ +++|+..|++++++....++..
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchh
Confidence            3445678888888888888888888888888873    3344578888888888888 8888888888888876665544


Q ss_pred             H
Q psy875          229 L  229 (480)
Q Consensus       229 ~  229 (480)
                      .
T Consensus        79 ~   79 (100)
T 3ma5_A           79 D   79 (100)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.80  E-value=4.8e-08  Score=78.14  Aligned_cols=110  Identities=18%  Similarity=0.103  Sum_probs=93.5

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----h
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----N  165 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~  165 (480)
                      +++++|+.+|++|.+..    +..    +.  +|.+|...+.+++|+++|+++...    ....+.++||.+|..    .
T Consensus         9 ~d~~~A~~~~~~aa~~g----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~   74 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVK   74 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSC
T ss_pred             cCHHHHHHHHHHHHcCC----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCC
Confidence            68999999999998753    221    22  999999999999999999999855    345789999999998    8


Q ss_pred             ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHH
Q psy875          166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDL  220 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~  220 (480)
                      +++++|+++|+++.+.      ..+.++.+||.+|..    .++ +++|+.+|++|.+.
T Consensus        75 ~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           75 KDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRL  126 (138)
T ss_dssp             CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHC
Confidence            9999999999999875      235678999999999    788 99999999999764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.79  E-value=3.8e-07  Score=82.32  Aligned_cols=174  Identities=6%  Similarity=-0.115  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           38 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        38 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      .++..+|.++...|++++|++++.+++.. .+ ......++..++.+| ...|+.+.|.+.+++..+..+..........
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~-~~~~lea~~l~vqi~-L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l  177 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDN-DE-AEGTTELLLLAIEVA-LLNNNVSTASTIFDNYTNAIEDTVSGDNEMI  177 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SC-STTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CC-CcCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence            34579999999999999999999998765 21 136677778889995 4459999999999988765320000011122


Q ss_pred             HHHHHHHHHHhcC--ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--C----cHHH
Q psy875          118 VMRSIKKLYKKHD--NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--N----FPEA  189 (480)
Q Consensus       118 ~~~~l~~~y~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~----~~~~  189 (480)
                      +...-|++....|  ++.+|..+|++.....+.......+.+   ++..+|++++|...+++.++....  +    .+..
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~  254 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK  254 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            3333455566666  999999999998766543112233333   899999999999999977766322  0    2446


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +.++.++..+...+|+   +|.+++.++...
T Consensus       255 ~~~LaN~i~l~~~lgk---~a~~l~~qL~~~  282 (310)
T 3mv2_B          255 PTFLANQITLALMQGL---DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHHHHHHHHHTTC---TTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCh---HHHHHHHHHHHh
Confidence            7888888888888887   667777776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.74  E-value=7.2e-08  Score=96.17  Aligned_cols=158  Identities=8%  Similarity=-0.003  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc--cHHHHHHHHHH
Q psy875           34 KDLASCYISLAQTYKDNKQ----------YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK--SFEIVQSTHEK  101 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~~A~~~~~k  101 (480)
                      +....+++..+.+....|+          ++++++++.++++.    .+....+|+..+.+ ...++  ++++++.++.+
T Consensus        60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w~-l~~l~~~~~~~el~~~~k  134 (567)
T 1dce_A           60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWL-LSRLPEPNWARELELCAR  134 (567)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHTCSSCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHcccccHHHHHHHHHH
Confidence            3446788999999998888          99999999999999    78888899999999 66678  77999999999


Q ss_pred             HHHhhhcCCCchHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh--------------c
Q psy875          102 ALDLARQNKDDKLIRTVMRSIKKLYKKHD-NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN--------------K  166 (480)
Q Consensus       102 Al~~~~~~~~~~~~~~~~~~l~~~y~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~--------------~  166 (480)
                      ++++..+.      ..++...+.+....| .++++++++.+++...+.  -..++...+.++..+              +
T Consensus       135 ~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--n~saW~~r~~ll~~l~~~~~~~~~~~~~~~  206 (567)
T 1dce_A          135 FLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NYSSWHYRSCLLPQLHPQPDSGPQGRLPEN  206 (567)
T ss_dssp             HHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CHHHHHHHHHHHHHHSCCCCSSSCCSSCHH
T ss_pred             HHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--CccHHHHHHHHHHhhcccccccccccccHH
Confidence            99985543      567888999999999 999999999999977654  447788888888775              7


Q ss_pred             cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHH
Q psy875          167 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFEL  209 (480)
Q Consensus       167 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (480)
                      .+++|++++.+|+.+.++    ...+|+.++.++...++ +++
T Consensus       207 ~~~eel~~~~~ai~~~P~----~~saW~y~~~ll~~~~~-~~~  244 (567)
T 1dce_A          207 VLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEP-HDV  244 (567)
T ss_dssp             HHHHHHHHHHHHHHHCSS----CSHHHHHHHHHHSCCCC-CSC
T ss_pred             HHHHHHHHHHHHHhhCCC----CccHHHHHHHHHhcCCC-ccc
Confidence            899999999999999443    45688889999988887 655

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.73  E-value=1e-07  Score=73.44  Aligned_cols=80  Identities=19%  Similarity=0.228  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHH
Q psy875           95 VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDY  174 (480)
Q Consensus        95 A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~  174 (480)
                      |+..|++++...+..      ..++.++|.+|...|++++|+.+|++++...+  ....++.++|.+|..+|++++|+.+
T Consensus         4 a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            4 ITERLEAMLAQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             HHHHHHHHHTTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            455555555443211      23455566666666666666666665554433  2234555566666666666666666


Q ss_pred             HHHHHhhh
Q psy875          175 FNKELRLH  182 (480)
Q Consensus       175 ~~~al~~~  182 (480)
                      |++++++.
T Consensus        76 ~~~al~~~   83 (115)
T 2kat_A           76 WESGLAAA   83 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66665553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.72  E-value=8.8e-08  Score=70.00  Aligned_cols=85  Identities=22%  Similarity=0.430  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875          150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKL  229 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  229 (480)
                      ....++..+|.++...|++++|+.+|+++++..    +....++.++|.++...|+ +++|+.++++++.+      .+.
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~------~p~   75 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALEL------DPN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTT
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc------CCC
Confidence            346788999999999999999999999999983    3346789999999999999 99999999999987      233


Q ss_pred             HHHHHHHHHHHHHHcC
Q psy875          230 IRTVMRSMKKLYKKHD  245 (480)
Q Consensus       230 ~~~~~~~l~~~~~~~g  245 (480)
                      ...++..++.++..+|
T Consensus        76 ~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           76 NAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            4567778888887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.62  E-value=2.9e-07  Score=68.88  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      -..+++.+|.+|...|++++|+.+|++++++    .+....+|..+|.+|.. .|++++|+.+|++++.+.+..++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCch
Confidence            3568999999999999999999999999999    56666789999999544 599999999999999997765554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.51  E-value=1.3e-05  Score=81.22  Aligned_cols=211  Identities=10%  Similarity=0.090  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHhccccHHHHH-HHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc-------
Q psy875           37 ASCYISLAQTYKDNKQYNLAV-DYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ-------  108 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~-------  108 (480)
                      ..+++..+......|+.++|. +.|.+|+..    .|.....+...+.+ ....|++++|...|++++.....       
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~-ee~~~~~e~aR~iyek~l~~l~~~~~~~~~  417 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC----IPNSAVLAFSLSEQ-YELNTKIPEIETTILSCIDRIHLDLAALME  417 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            456777888888889999997 999999987    44445566777888 55559999999999999975321       


Q ss_pred             -CCC--------chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-cHHHHHHHHHHH
Q psy875          109 -NKD--------DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKE  178 (480)
Q Consensus       109 -~~~--------~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-~~~~A~~~~~~a  178 (480)
                       .+.        ......++...+.+..+.|..+.|...|.++++..+.. ...+|...|.+-...+ +++.|...|+++
T Consensus       418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~  496 (679)
T 4e6h_A          418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELG  496 (679)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence             111        11344567777888888899999999999998762211 1245666677766665 599999999999


Q ss_pred             HhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          179 LRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       179 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      ++..+.+    ...+...+......|+ .+.|...|++|+....   +......++.....+-...|+.+.+....+++.
T Consensus       497 Lk~~p~~----~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~  568 (679)
T 4e6h_A          497 LKYFATD----GEYINKYLDFLIYVNE-ESQVKSLFESSIDKIS---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF  568 (679)
T ss_dssp             HHHHTTC----HHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSS---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             HHHCCCc----hHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9986544    3345667777888899 9999999999986521   123566778888888999999999999998887


Q ss_pred             HHH
Q psy875          259 SLE  261 (480)
Q Consensus       259 ~l~  261 (480)
                      +..
T Consensus       569 ~~~  571 (679)
T 4e6h_A          569 EKF  571 (679)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            644

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.48  E-value=5.7e-06  Score=76.15  Aligned_cols=166  Identities=11%  Similarity=0.015  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcccccccHHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD-NLDSACSELHTVLSSDLCKDLAS  153 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~-~~~~A~~~~~~~l~~~~~~~~~~  153 (480)
                      ..++..+..+ ....+..++|+..+.+++.+.+..      ..+++..+.+...+| .+++++.++.+++...++.  ..
T Consensus        54 ~~~~~~~r~~-~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn--y~  124 (349)
T 3q7a_A           54 KDAMDYFRAI-AAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS--YQ  124 (349)
T ss_dssp             HHHHHHHHHH-HHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC--HH
T ss_pred             HHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc--HH
Confidence            3444455555 444467789999999999886543      567888899999999 5999999999999777544  47


Q ss_pred             HHHHHHHHHHhh-c-cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHH
Q psy875          154 CYISLAQTYKDN-K-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE--------LVVSTHEKALDLARQ  223 (480)
Q Consensus       154 ~~~~la~~y~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~A~~~~~~al~~~~~  223 (480)
                      +++..+.++... + +++++++++.++++.    .+....+|...+.+....|. ++        ++++++.++++.   
T Consensus       125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~---  196 (349)
T 3q7a_A          125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRV---  196 (349)
T ss_dssp             HHHHHHHHHHHHCCSCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHh---
Confidence            788888888888 7 899999999999987    45557789999999999888 88        899999998876   


Q ss_pred             cCCcHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHH
Q psy875          224 NKDDKLIRTVMRSMKKLYKKHDK-------FTELEQIKTELKSL  260 (480)
Q Consensus       224 ~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~l  260 (480)
                         .+.-..++...+.+....+.       +++++++.++++.+
T Consensus       197 ---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~  237 (349)
T 3q7a_A          197 ---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL  237 (349)
T ss_dssp             ---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence               44455677788888888886       57777777776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.39  E-value=4.5e-07  Score=67.50  Aligned_cols=87  Identities=10%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcccccccHHH-HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLCKDLAS-CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      ..+|..+...|++++|+.+|++++...+.  ... ++.++|.+|..+|++++|+.+|++++++.+.+..    ++.+   
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~---   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA----LQAR---   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHH---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----HHHH---
Confidence            46788889999999999999998876543  346 8889999999999999999999999988544332    2211   


Q ss_pred             HHHHhCCchHHHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                           +. +.+|+.+|+++....
T Consensus        75 -----~~-~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           75 -----KM-VMDILNFYNKDMYNQ   91 (99)
T ss_dssp             -----HH-HHHHHHHHCCTTHHH
T ss_pred             -----HH-HHHHHHHHHHHhccC
Confidence                 34 677777777666553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.38  E-value=0.00013  Score=68.21  Aligned_cols=210  Identities=12%  Similarity=0.002  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN-FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ..-.+.+.||.+|...|++++-.+++.....++..- ....+.....+-..+...-+..+.-++...++++.++...-..
T Consensus        17 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f   96 (394)
T 3txn_A           17 IKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF   96 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999998887774211 2223333444444423333556666677777777766432222


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc----ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---Cc
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD----LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NF  186 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~  186 (480)
                      ....+-..+|.+|...|+|.+|.+.+.+.+..-    ....+..++..-..+|..++++.++..++.+|......   ++
T Consensus        97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p  176 (394)
T 3txn_A           97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP  176 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence            122345589999999999999999998666432    22455778888899999999999999999999887544   34


Q ss_pred             HHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875          187 PEAVKTLGEIGDLYE-LQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK  246 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  246 (480)
                      ...+.....-|.++. ..++ |.+|..+|-++.+-+...+. +....+...++-+-...++
T Consensus       177 ~i~a~i~~~~Gi~~l~~~rd-yk~A~~~F~eaf~~f~~~~~-~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          177 KVQGALDLQSGILHAADERD-FKTAFSYFYEAFEGFDSVDS-VKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhHHHHHhccC-HHHHHHHHHHHHhccccccc-HHHHHHHHHHHHHHHHcCC
Confidence            456777777888888 7999 99999999998765543332 3334444555544444444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.32  E-value=1.3e-06  Score=64.92  Aligned_cols=60  Identities=12%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          156 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK-TLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       156 ~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +..|.++...|++++|+.+|+++++..    +.... ++..+|.++..+|+ +++|+.+|++++++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~   64 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Confidence            568999999999999999999999983    33456 89999999999999 99999999999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.32  E-value=1.8e-05  Score=72.66  Aligned_cols=137  Identities=13%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhc---cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhh--c-cHHHHHHHHHHHHHhhhcCCC
Q psy875           38 SCYISLAQTYKD---NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQE--K-SFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        38 ~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~--~-~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      .-++..|..+..   ..++.+|+.+|++|+++    .|..+.++..++.+|....  + .......-+..++........
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~  272 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQS----SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE  272 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence            334455555543   46679999999999999    7777777777766643211  1 111222333344433222333


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      .+..+.++..++..+...|++++|+..+++++...+  . ...|..+|.++.-.|++++|++.|.+|+.+
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            344566778888888888999999999999987763  2 456788899999999999999999999988

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.24  E-value=7.3e-06  Score=61.56  Aligned_cols=66  Identities=14%  Similarity=-0.034  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDL-----CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      -+..||..+...++|.+|+..|++++...+     ......++..||.+|.++|++++|+.++++++++.+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            456778888888888888888887775432     134567778888888888888888888888887733

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.19  E-value=0.00041  Score=64.78  Aligned_cols=181  Identities=11%  Similarity=0.011  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhcccccc--cHH
Q psy875           76 KTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH-DNLDSACSELHTVLSSDLCK--DLA  152 (480)
Q Consensus        76 ~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~-~~~~~A~~~~~~~l~~~~~~--~~~  152 (480)
                      .+...+|.+|... |++++-..++........... ....+.+..++-..+... +..+.-++.+.++++.....  .+.
T Consensus        20 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           20 QGILQQGELYKQE-GKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHH-TCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889995555 999999888887766655443 334455556666666654 34455555555555433322  222


Q ss_pred             H--HHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc-CCc
Q psy875          153 S--CYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN-KDD  227 (480)
Q Consensus       153 ~--~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~  227 (480)
                      .  +-..+|..|++.|+|.+|.+.+.+..+-...  +......++.....+|...++ +.++..++.+|....... .++
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n-~~k~k~~l~~a~~~~~ai~~~p  176 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN-LPKARAALTSARTTANAIYCPP  176 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhhccCCCCH
Confidence            2  3457999999999999999999998887655  567788899999999999999 999999999999988776 566


Q ss_pred             HHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q psy875          228 KLIRTVMRSMKKLYK-KHDKFTELEQIKTELKS  259 (480)
Q Consensus       228 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~  259 (480)
                      ..++.....-|.++. ..++|..|..++-++.+
T Consensus       177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            677777778888888 89999999999988754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.19  E-value=1.2e-05  Score=60.30  Aligned_cols=67  Identities=15%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC---cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARN---FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .-.+.||..++..++|..|+.+|++|++.....   ......++..+|.+++++|+ +++|+.++++++++
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l   75 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhc
Confidence            456789999999999999999999999986542   24567889999999999999 99999999999987

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.13  E-value=0.0001  Score=74.72  Aligned_cols=187  Identities=9%  Similarity=-0.013  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCC
Q psy875           53 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQ-STHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDN  131 (480)
Q Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~-~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~  131 (480)
                      .+.....|++++..    .+.....|...+.. ....|+.++|. ..|.+|+...+..      ...+...+.+....|+
T Consensus       325 ~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~-~~~~~~~~~a~r~il~rAi~~~P~s------~~Lwl~~a~~ee~~~~  393 (679)
T 4e6h_A          325 KARMTYVYMQAAQH----VCFAPEIWFNMANY-QGEKNTDSTVITKYLKLGQQCIPNS------AVLAFSLSEQYELNTK  393 (679)
T ss_dssp             HHHHHHHHHHHHHH----TTTCHHHHHHHHHH-HHHHSCCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHH----cCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCC
Confidence            34456778888887    45556677777887 45558888997 9999999765432      3456678888999999


Q ss_pred             hHHHHHHHHHHhcccc---------cc-----------cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          132 LDSACSELHTVLSSDL---------CK-----------DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       132 ~~~A~~~~~~~l~~~~---------~~-----------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      +++|...|++++...+         .|           ....++...+....+.|..+.|...|.+|++......   ..
T Consensus       394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~---~~  470 (679)
T 4e6h_A          394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT---PD  470 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---TH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---hH
Confidence            9999999998886421         01           2345677788888888999999999999987622211   23


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .|...|.+-...+++++.|...|+++++..   ++.+.   .....+++....|+.+.|...++++..
T Consensus       471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~~~~---~w~~y~~fe~~~~~~~~AR~lferal~  532 (679)
T 4e6h_A          471 IYLENAYIEYHISKDTKTACKVLELGLKYF---ATDGE---YINKYLDFLIYVNEESQVKSLFESSID  532 (679)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCchH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            455566666665544899999999999864   23332   234556677788999999999998765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.99  E-value=0.00043  Score=61.01  Aligned_cols=90  Identities=11%  Similarity=0.036  Sum_probs=75.4

Q ss_pred             ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh-C
Q psy875          131 NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN-----KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ-E  204 (480)
Q Consensus       131 ~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-~  204 (480)
                      ...+|...+++++++.+.-....+|..+|.+|...     |+.++|..+|++|+++.++   ....++...|..+... |
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~---~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA---HDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT---TCSHHHHHHHHHTTTTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHhcC
Confidence            46789999999999887766678999999999995     9999999999999999432   1256778889988885 8


Q ss_pred             CchHHHHHHHHHHHHHHHHc
Q psy875          205 KPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       205 ~~~~~A~~~~~~al~~~~~~  224 (480)
                      + +++|..++++++......
T Consensus       255 d-~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          255 N-RAGFDEALDRALAIDPES  273 (301)
T ss_dssp             C-HHHHHHHHHHHHHCCGGG
T ss_pred             C-HHHHHHHHHHHHcCCCCC
Confidence            8 999999999999875543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.98  E-value=0.00014  Score=66.89  Aligned_cols=120  Identities=11%  Similarity=0.056  Sum_probs=86.3

Q ss_pred             hccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc---C-ChHHHHH----HHHHHhcccccccHHHHHHHHHH
Q psy875           89 EKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH---D-NLDSACS----ELHTVLSSDLCKDLASCYISLAQ  160 (480)
Q Consensus        89 ~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~---~-~~~~A~~----~~~~~l~~~~~~~~~~~~~~la~  160 (480)
                      ..++.+|+.+|++|+++.+..      +.++..++.+|...   + .-.....    .++.+......+..+.++..+|.
T Consensus       212 ~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal  285 (372)
T 3ly7_A          212 DKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV  285 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHH
Confidence            356799999999999985432      44455555555321   1 1111111    22222233444666788989999


Q ss_pred             HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .+...|++++|+.++++|+.+.    +. ...+..+|.++...|+ +++|++.|.+|+.+
T Consensus       286 ~~l~~gd~d~A~~~l~rAl~Ln----~s-~~a~~llG~~~~~~G~-~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          286 SALVKGKTDESYQAINTGIDLE----MS-WLNYVLLGKVYEMKGM-NREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHhcC----CC-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc
Confidence            9998999999999999999993    22 4577889999999999 99999999999987

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.78  E-value=0.00041  Score=55.30  Aligned_cols=105  Identities=14%  Similarity=0.003  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFP------EAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~  107 (480)
                      +.-.++++.-....+..+.|+.|+-....++.+. ++.+      ..+.++..+|.+++.+ ++|..|..+|++|+...+
T Consensus        17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~-~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHD-KEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHH
Confidence            3445566666777888999999999999998884 2222      3567888899997777 999999999999998776


Q ss_pred             cCCCchH-------------------HHHHHHHHHHHHHhcCChHHHHHHHH
Q psy875          108 QNKDDKL-------------------IRTVMRSIKKLYKKHDNLDSACSELH  140 (480)
Q Consensus       108 ~~~~~~~-------------------~~~~~~~l~~~y~~~~~~~~A~~~~~  140 (480)
                      .....+.                   ...+-+.++.+|..++++++|+..++
T Consensus        95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A           95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence            5432221                   11333455555555555555555554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.021  Score=54.77  Aligned_cols=209  Identities=14%  Similarity=0.126  Sum_probs=136.1

Q ss_pred             cccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-hHHHHHHHHHHHHH
Q psy875           50 NKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-KLIRTVMRSIKKLY  126 (480)
Q Consensus        50 ~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-~~~~~~~~~l~~~y  126 (480)
                      .|+++.|++-+....+..  ..+......+...+..+++.. ++|+...+++.- +  .+..+.. .........+-...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~-~~~~~l~e~i~~-L--skkr~qlk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASR-NKWDDLNEQLTL-L--SKKHGQLKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHH-SCHHHHHHHHHH-H--HTTTTTSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHh-ccHHHHHHHHHH-H--HHHhhhhHHHHHHHHHHHHHHH
Confidence            478999998775555443  445555566777788884555 999887666532 2  2222222 22222222222222


Q ss_pred             HhcCChHHHHHHHH-HHhc-cccc-----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHH
Q psy875          127 KKHDNLDSACSELH-TVLS-SDLC-----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAVKTLGEIG  197 (480)
Q Consensus       127 ~~~~~~~~A~~~~~-~~l~-~~~~-----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~  197 (480)
                      ......+....... ..+. ....     ...+.+...|+.+|...|++.+|...+.....-..+  +.......+....
T Consensus       105 ~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~  184 (445)
T 4b4t_P          105 KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM  184 (445)
T ss_dssp             HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            22333332222111 1111 1111     224667788999999999999999999886533222  5567788899999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          198 DLYELQEKPFELVVSTHEKALDLARQ-NKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      .+|...++ +.+|...++++...... ...+......+..++.++...++|.+|..+|.++......
T Consensus       185 rl~l~~~d-~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          185 ELSILKGD-YSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCC-HHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            99999999 99999999998654444 4455567788889999999999999999999888765443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.76  E-value=0.0018  Score=63.39  Aligned_cols=165  Identities=7%  Similarity=-0.060  Sum_probs=91.3

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHHhhhcCC
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKS---------FEIVQSTHEKALDLARQNK  110 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~---------~~~A~~~~~kAl~~~~~~~  110 (480)
                      +..+=..+.+.|+.++|++.|.+..+.  +-.++ ..+|+.+-.+ +...+.         .++|...|.+.....-   
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd-~~tyn~Li~~-c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~---  101 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN--GVQLS-QYHYNVLLYV-CSLAEAATESSPNPGLSRGFDIFKQMIVDKV---  101 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCC-HHHHHHHHHH-HTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC-HhHHHHHHHH-HHhCCchhhhhhcchHHHHHHHHHHHHHhCC---
Confidence            344445666777777777777776654  22222 2334444333 222233         3445555544433211   


Q ss_pred             CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHH
Q psy875          111 DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAV  190 (480)
Q Consensus       111 ~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  190 (480)
                       .+. ..+|..+-..|.+.|++++|...|++.....-.|+ ..+|..+-..|.+.|+.++|.+.|++..+.  +-.| ..
T Consensus       102 -~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~P-d~  175 (501)
T 4g26_A          102 -VPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES--EVVP-EE  175 (501)
T ss_dssp             -CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCC-CH
T ss_pred             -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC-CH
Confidence             111 34566677777777777777777776554332233 345666667777777777777777665543  1111 13


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKAL  218 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al  218 (480)
                      .+|..+-..+.+.|+ .++|...+++..
T Consensus       176 ~ty~~Li~~~~~~g~-~d~A~~ll~~Mr  202 (501)
T 4g26_A          176 PELAALLKVSMDTKN-ADKVYKTLQRLR  202 (501)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence            456666667777777 777777666643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.74  E-value=0.0028  Score=62.00  Aligned_cols=129  Identities=6%  Similarity=-0.002  Sum_probs=84.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH-----HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHH
Q psy875           86 ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKK-----LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQ  160 (480)
Q Consensus        86 ~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~-----~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~  160 (480)
                      +.+.|+.++|+..|++..+..-.. +...........+.     .....+..++|.+.|++.....-.|+ ..+|..+-.
T Consensus        36 c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~~tyn~lI~  113 (501)
T 4g26_A           36 CSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-EATFTNGAR  113 (501)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHH
Confidence            345599999999999888764322 22111111111111     01233457888888887665443344 356888888


Q ss_pred             HHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          161 TYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       161 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      .|.+.|++++|.+.|++..+.  +-.| ...+|..+-..|.+.|+ .++|.+.+++..+.
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~--g~~P-d~~tyn~lI~~~~~~g~-~~~A~~l~~~M~~~  169 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAF--GIQP-RLRSYGPALFGFCRKGD-ADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHHHHc--CCCC-ccceehHHHHHHHHCCC-HHHHHHHHHHHHhc
Confidence            999999999999999886553  1111 24567777888888999 99999998887653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.72  E-value=0.00084  Score=53.53  Aligned_cols=101  Identities=13%  Similarity=-0.019  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhc-----CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCC---
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRLHAR-----NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKD---  226 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---  226 (480)
                      +..-..-..+.|.|+.|+-....++.+.+.     .+.....++..+|++++.+++ |..|..+|++|+...+....   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence            444455566677777777777776666433     233456677777888888888 88888888887766543211   


Q ss_pred             ----------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          227 ----------------DKLIRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       227 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                                      .....++.+.++.||.++|++++|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                            112346778899999999999999988753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.70  E-value=0.00034  Score=55.45  Aligned_cols=86  Identities=10%  Similarity=0.084  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccH
Q psy875           92 FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQY  168 (480)
Q Consensus        92 ~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~  168 (480)
                      ...+.+.|.+++....      ....+.+++|+++.+.+   ++++++..+++.+..........++++||..|+++|+|
T Consensus        14 l~~~~~~y~~e~~~~~------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y   87 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   87 (152)
T ss_dssp             HHHHHHHHHHHHHTTC------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHccCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence            4445555666554211      12456778888888888   67799999998886541113457888999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy875          169 NLAVDYFNKELRLHA  183 (480)
Q Consensus       169 ~~A~~~~~~al~~~~  183 (480)
                      ++|+.|+++++++.+
T Consensus        88 ~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           88 EKALKYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999998844

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.61  E-value=0.00047  Score=50.16  Aligned_cols=66  Identities=12%  Similarity=-0.005  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhcCC---hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          117 TVMRSIKKLYKKHDN---LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .++..+|.++...++   .++|...+++++...+  ....+...+|..+++.|+|++|+.++++.++..+.
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            445666666655544   6788888888876654  33466777788888888888888888887776444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.58  E-value=0.0011  Score=52.59  Aligned_cols=94  Identities=12%  Similarity=-0.040  Sum_probs=67.2

Q ss_pred             ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q psy875           51 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK---SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYK  127 (480)
Q Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~---~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~  127 (480)
                      .....+.+.|.+.++.    .+....+.+++|.+ ....+   +.++++..+++.++..    .+.....+++++|..|.
T Consensus        12 ~~l~~~~~~y~~e~~~----~~~~~~~~F~ya~~-Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~   82 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAA----GSVSKSTQFEYAWC-LVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNY   82 (152)
T ss_dssp             HHHHHHHHHHHHHHHT----TCCCHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc----CCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHH
Confidence            3455566666666553    22345566777777 55545   7779999998888753    12345678899999999


Q ss_pred             hcCChHHHHHHHHHHhcccccccHHH
Q psy875          128 KHDNLDSACSELHTVLSSDLCKDLAS  153 (480)
Q Consensus       128 ~~~~~~~A~~~~~~~l~~~~~~~~~~  153 (480)
                      ++|+|++|.+|++++++..|....+.
T Consensus        83 kl~~Y~~A~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           83 RLKEYEKALKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999998888655443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.023  Score=54.51  Aligned_cols=197  Identities=9%  Similarity=0.047  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .....++...+..++...++++...+++.-..+. .+..+.....+.....-|.......+.  ....+.+.......+.
T Consensus        52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk-r~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~  128 (445)
T 4b4t_P           52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK-HGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTEN  128 (445)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT-TTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhcc
Confidence            3334566777888888899998877766432222 222222222222222222222122221  1222333322222211


Q ss_pred             -----hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhc----ccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh-h
Q psy875          113 -----KLIRTVMRSIKKLYKKHDNLDSACSELHTVLS----SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL-H  182 (480)
Q Consensus       113 -----~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~  182 (480)
                           ...+.+...|+.+|...|++.+|...+.....    ..+.......+....++|...++|.+|..++.++... .
T Consensus       129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~  208 (445)
T 4b4t_P          129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF  208 (445)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence                 23466778999999999999999999996542    2222445778888999999999999999999997543 2


Q ss_pred             hc--CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy875          183 AR--NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTV  233 (480)
Q Consensus       183 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  233 (480)
                      ..  .+......+...|.++...++ |.+|..+|.++.......++......+
T Consensus       209 ~~~~~~~lk~~~~~~~~~~~~~e~~-y~~a~~~y~e~~~~~~~~~d~~~~~~~  260 (445)
T 4b4t_P          209 KNPKYESLKLEYYNLLVKISLHKRE-YLEVAQYLQEIYQTDAIKSDEAKWKPV  260 (445)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcccccCCHHHHHHH
Confidence            22  344567788889999999999 999999999998876665555443333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.52  E-value=0.00031  Score=51.17  Aligned_cols=68  Identities=18%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             cHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          150 DLASCYISLAQTYKDNKQ---YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      ..+.++..+|.+++..++   .++|..++++++++    .|....++..+|.+++..|+ |++|+.+++++++...
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~-y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFR-FQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence            345778889988876555   79999999999999    66778899999999999999 9999999999987643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.40  E-value=0.026  Score=55.10  Aligned_cols=182  Identities=9%  Similarity=-0.077  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchH------------------
Q psy875           53 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKL------------------  114 (480)
Q Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~------------------  114 (480)
                      .+.....|++++..    .+.....|...+.. ....|+.+.|...|++|+.. +... ...                  
T Consensus       195 ~~Rv~~~ye~al~~----~p~~~~lW~~ya~~-~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~~~e~~~~~~~l~~  267 (493)
T 2uy1_A          195 ESRMHFIHNYILDS----FYYAEEVYFFYSEY-LIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGLVMDEEAVYGDLKR  267 (493)
T ss_dssp             HHHHHHHHHHHHHH----TTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHHHTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHhhcchhHHHHHHHH
Confidence            34566788888877    33335666777777 55568999999999999987 3321 100                  


Q ss_pred             -----------------HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-cHHHHHHHHH
Q psy875          115 -----------------IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-QYNLAVDYFN  176 (480)
Q Consensus       115 -----------------~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-~~~~A~~~~~  176 (480)
                                       ...++...+......+..+.|...|.++ . .+. ....++...|.+-...+ +++.|...|+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife  344 (493)
T 2uy1_A          268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATPYNIFS  344 (493)
T ss_dssp             HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence                             0112223333333445566666666665 2 111 12234444444444444 4666666666


Q ss_pred             HHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy875          177 KELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTE  256 (480)
Q Consensus       177 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  256 (480)
                      ++++...+. +   ..+...++.....|+ .+.|...|+++.       .   ....+.....+-...|+.+.+...+++
T Consensus       345 ~al~~~~~~-~---~~~~~yid~e~~~~~-~~~aR~l~er~~-------k---~~~lw~~~~~fE~~~G~~~~~r~v~~~  409 (493)
T 2uy1_A          345 SGLLKHPDS-T---LLKEEFFLFLLRIGD-EENARALFKRLE-------K---TSRMWDSMIEYEFMVGSMELFRELVDQ  409 (493)
T ss_dssp             HHHHHCTTC-H---HHHHHHHHHHHHHTC-HHHHHHHHHHSC-------C---BHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHCCCC-H---HHHHHHHHHHHHcCC-HHHHHHHHHHHH-------H---HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666654322 1   223334445555666 666666665541       0   123344444455556777777766666


Q ss_pred             HHH
Q psy875          257 LKS  259 (480)
Q Consensus       257 ~~~  259 (480)
                      ...
T Consensus       410 ~~~  412 (493)
T 2uy1_A          410 KMD  412 (493)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.30  E-value=0.0014  Score=57.87  Aligned_cols=89  Identities=13%  Similarity=0.108  Sum_probs=73.7

Q ss_pred             cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh-
Q psy875           91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH-----DNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD-  164 (480)
Q Consensus        91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~-  164 (480)
                      ....|...+++|+++.+    ......+|..+|.+|...     |+.++|..+|++++.+.++.. ..+++..|..+.. 
T Consensus       178 ~l~~A~a~lerAleLDP----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-id~~v~YA~~l~~~  252 (301)
T 3u64_A          178 TVHAAVMMLERACDLWP----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-PDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-SHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHhCC----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHh
Confidence            45788888999998854    234577999999999995     999999999999999887532 3678889999988 


Q ss_pred             hccHHHHHHHHHHHHhhhhc
Q psy875          165 NKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       165 ~~~~~~A~~~~~~al~~~~~  184 (480)
                      +|++++|..++++++.....
T Consensus       253 ~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          253 LNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TTCHHHHHHHHHHHHHCCGG
T ss_pred             cCCHHHHHHHHHHHHcCCCC
Confidence            49999999999999998444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.0085  Score=57.29  Aligned_cols=109  Identities=16%  Similarity=0.051  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      +..++..+|..|...|++++|.++|.++... ..........+..+-.++... ++|..+..++.+|..+....+++...
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            3446778999999999999999999998877 444455666667777774444 89999999999998887777777666


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhccc
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSD  146 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~  146 (480)
                      .......|.++...++|.+|..+|..+....
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            6666677788888888888888888766443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.096  Score=50.28  Aligned_cols=213  Identities=15%  Similarity=0.061  Sum_probs=111.5

Q ss_pred             HHHhccccHHHHHHHHHHHHH--Hhh---cc--CchHHHHHHHHHHHHHHhhccHHH----------HHHHHHHHHHhhh
Q psy875           45 QTYKDNKQYNLAVDYFNKELR--LHA---RN--FPEAVKTLGEIGDLYELQEKSFEI----------VQSTHEKALDLAR  107 (480)
Q Consensus        45 ~~~~~~~~~~~A~~~~~~al~--~~~---~~--~~~~~~~~~~lg~~y~~~~~~~~~----------A~~~~~kAl~~~~  107 (480)
                      ......++|++|.++....+.  ...   ..  ..-.+.+|+..+.+ +...|....          -...+..+++.+.
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~-~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~  222 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLS-HETLARSSEEINSDNQNIILRSTMMKFLKIAS  222 (523)
T ss_dssp             ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence            344568899999998876652  211   11  12245566766666 333354433          2445667777777


Q ss_pred             cCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccc---ccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          108 QNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSD---LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .-.|....+.+++.+-..|...+.|++|..+..++.-..   .+...+..++.+|.++.-+++|.+|.+++..|++.++.
T Consensus       223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~  302 (523)
T 4b4t_S          223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH  302 (523)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred             cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            667777888899999999999999999999999885321   22455777888999999999999999999999987554


Q ss_pred             C---cHHHHHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875          185 N---FPEAVKTLGEIGDLYELQEKP----------FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE  251 (480)
Q Consensus       185 ~---~~~~~~~~~~l~~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  251 (480)
                      +   ......++..+--+-.-+|+-          ++.++.-|... ..+-+.++......+...-...+.+-|.+.-..
T Consensus       303 ~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~L-v~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~  381 (523)
T 4b4t_S          303 NSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHL-TKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCV  381 (523)
T ss_dssp             SSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHH-HHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHH
T ss_pred             chhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHhcceeccCChhHHHH
Confidence            2   122333333333333233441          23333333221 222245677777777777788888889887776


Q ss_pred             HHHHHHHH
Q psy875          252 QIKTELKS  259 (480)
Q Consensus       252 ~~~~~~~~  259 (480)
                      +....+.+
T Consensus       382 rLr~~vir  389 (523)
T 4b4t_S          382 RLRSNVIK  389 (523)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.0088  Score=57.18  Aligned_cols=106  Identities=9%  Similarity=0.017  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc--CcHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR--NFPEAV  190 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~--~~~~~~  190 (480)
                      .+..++..+|..|...|++++|.+.|.+....... .....++..+.+++...++|..+..++.++..+...  ++....
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~  208 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN  208 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence            34456778999999999999999999987754433 455778888999999999999999999999877554  444555


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ......|.++...++ |.+|..+|..+...
T Consensus       209 ~lk~~~gl~~l~~r~-f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          209 RYKTYYGIHCLAVRN-FKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHGGGGTSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCh-HHHHHHHHHHHhcc
Confidence            666677888888999 99999999887654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.51  E-value=0.055  Score=41.11  Aligned_cols=88  Identities=11%  Similarity=0.072  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHH---HHHHHHHHhcccccccHHHHHHHHHHHHHhhcc
Q psy875           91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDS---ACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ  167 (480)
Q Consensus        91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~---A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~  167 (480)
                      ....+...|.+++....      ....+.+++|+.+.+..+...   ++..++..+........-.+++.||..+++.|+
T Consensus        16 ~l~~~~~~y~~e~~~~~------~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~   89 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence            34445555666654311      113566789999998886665   999999877654212446788999999999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy875          168 YNLAVDYFNKELRLHAR  184 (480)
Q Consensus       168 ~~~A~~~~~~al~~~~~  184 (480)
                      |++|..+++..+++-+.
T Consensus        90 Y~~A~~~~~~lL~~eP~  106 (126)
T 1nzn_A           90 YEKALKYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            99999999999998443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.24  E-value=0.098  Score=40.84  Aligned_cols=89  Identities=17%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHH
Q psy875           93 EIVQSTHEKALDLARQNKDD--KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNL  170 (480)
Q Consensus        93 ~~A~~~~~kAl~~~~~~~~~--~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~  170 (480)
                      ++-+..|++|+...+.....  ...+.++...+.. ...++.++|.+.|+.++..  ....+.++...|..-.++|+...
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~k  112 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKK  112 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHH
Confidence            77778899998765443322  3334455555544 5668999999999988876  34458888888999999999999


Q ss_pred             HHHHHHHHHhhhhc
Q psy875          171 AVDYFNKELRLHAR  184 (480)
Q Consensus       171 A~~~~~~al~~~~~  184 (480)
                      |.+.+.+|+.+...
T Consensus       113 ARkILg~AiG~~~k  126 (161)
T 4h7y_A          113 SKQLLQKAVERGAV  126 (161)
T ss_dssp             HHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhccCCC
Confidence            99999999988554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.86  E-value=0.24  Score=48.22  Aligned_cols=147  Identities=8%  Similarity=-0.085  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH--------------------
Q psy875           93 EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA--------------------  152 (480)
Q Consensus        93 ~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~--------------------  152 (480)
                      ..+...|++|+...+..      ..++...+..+...|+.++|...|++++.. |.....                    
T Consensus       196 ~Rv~~~ye~al~~~p~~------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~  268 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYA------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRK  268 (493)
T ss_dssp             HHHHHHHHHHHHHTTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHH
Confidence            44567788888765422      456777888889999999999999999977 553211                    


Q ss_pred             ------------------HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875          153 ------------------SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTH  214 (480)
Q Consensus       153 ------------------~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  214 (480)
                                        .++...+....+.++.+.|...|++| .. +.   .....|...|.+-+..+++++.|...|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~---~~~~v~i~~A~lE~~~~~d~~~ar~if  343 (493)
T 2uy1_A          269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EG---VGPHVFIYCAFIEYYATGSRATPYNIF  343 (493)
T ss_dssp             TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SC---CCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CC---CChHHHHHHHHHHHHHCCChHHHHHHH
Confidence                              11222233333456667777777777 32 11   112344445555555553377788888


Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          215 EKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       215 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      +.+++..   ++.+..   ....++.....|+.+.|...++++
T Consensus       344 e~al~~~---~~~~~~---~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          344 SSGLLKH---PDSTLL---KEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHC---TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHC---CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777643   223322   222355566777777777666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.78  E-value=0.18  Score=38.32  Aligned_cols=95  Identities=11%  Similarity=-0.083  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q psy875           52 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEI---VQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK  128 (480)
Q Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~---A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~  128 (480)
                      ....+.+.|.++...    ......+-+++|.+ .....+...   ++..++..+..    ..+.....+++.||..+++
T Consensus        16 ~l~~~~~~y~~e~~~----~~~s~~~~F~yAw~-Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yk   86 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAA----GSVSKSTQFEYAWC-LVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYR   86 (126)
T ss_dssp             HHHHHHHHHHHHHHH----SCCCHHHHHHHHHH-HTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc----CCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHH
Confidence            344455555555443    12233445666666 444344433   66666654432    1233567789999999999


Q ss_pred             cCChHHHHHHHHHHhcccccccHHHHH
Q psy875          129 HDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus       129 ~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      +|+|++|..+++..|...|....+..+
T Consensus        87 lg~Y~~A~~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           87 LKEYEKALKYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999888876555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.52  E-value=0.45  Score=49.36  Aligned_cols=25  Identities=12%  Similarity=0.078  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTV  142 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~  142 (480)
                      .+..+|..+...++++.|+.+|.++
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4456666666666666666666644

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.50  E-value=0.24  Score=38.69  Aligned_cols=82  Identities=12%  Similarity=0.036  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCc
Q psy875          133 DSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKP  206 (480)
Q Consensus       133 ~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (480)
                      ++-.+.|++++...|.      ...+.++...|.. ...++.++|.+.|+.++++.    ...+.+|...|..-.++|+ 
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h----KkFAKiwi~~AqFEiRqgn-  109 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC----KKFAFVHISFAQFELSQGN-  109 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC----TTBHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccc-
Confidence            6777788877754433      2335666666744 67799999999999999972    2228999999999999999 


Q ss_pred             hHHHHHHHHHHHHH
Q psy875          207 FELVVSTHEKALDL  220 (480)
Q Consensus       207 ~~~A~~~~~~al~~  220 (480)
                      ...|.+.+.+|+.+
T Consensus       110 l~kARkILg~AiG~  123 (161)
T 4h7y_A          110 VKKSKQLLQKAVER  123 (161)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999999875

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.039  Score=52.95  Aligned_cols=166  Identities=10%  Similarity=0.025  Sum_probs=72.8

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHH--HhhhcCC---CchHHHHHHHHHHHHHHhcCChHHHHH----------HHHHHh--
Q psy875           81 IGDLYELQEKSFEIVQSTHEKAL--DLARQNK---DDKLIRTVMRSIKKLYKKHDNLDSACS----------ELHTVL--  143 (480)
Q Consensus        81 lg~~y~~~~~~~~~A~~~~~kAl--~~~~~~~---~~~~~~~~~~~l~~~y~~~~~~~~A~~----------~~~~~l--  143 (480)
                      +-.+|....+++++|..+-...+  ......+   -+...+.+|+-.+.+|...|+......          .+..++  
T Consensus       141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt  220 (523)
T 4b4t_S          141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI  220 (523)
T ss_dssp             --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence            35566667789999988776655  2222111   123345667777777777776654321          111222  


Q ss_pred             --cccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh-cCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          144 --SSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA-RNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       144 --~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                        -.......+.+++.+-+.|...+.|++|..+..++.--.. ......+..++.+|.++.-+++ |.+|.+++..|+..
T Consensus       221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~-Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLD-YSTANEYIIAAIRK  299 (523)
T ss_dssp             CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTSS
T ss_pred             HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHh
Confidence              1122244577888899999999999999999998842111 1345567888999999999999 99999999999865


Q ss_pred             HHHcC-CcHHHHHHHHHHHHHHHHcCCh
Q psy875          221 ARQNK-DDKLIRTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       221 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~  247 (480)
                      +.... .......++..+.-+-.-+|+.
T Consensus       300 ap~~~~a~gfr~~a~K~lI~V~LLlG~i  327 (523)
T 4b4t_S          300 APHNSKSLGFLQQSNKLHCCIQLLMGDI  327 (523)
T ss_dssp             CSCSSSCSHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCcchhhhhHHHHHHHHHHhHHhhcCCC
Confidence            43222 2234455555555554445653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.68  E-value=0.56  Score=47.71  Aligned_cols=123  Identities=9%  Similarity=0.018  Sum_probs=78.0

Q ss_pred             hcCC-hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh----c----C------cHHHHHH
Q psy875          128 KHDN-LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA----R----N------FPEAVKT  192 (480)
Q Consensus       128 ~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~----~----~------~~~~~~~  192 (480)
                      ..++ ++.|+.++++.....+..........++.......+--+|+..+.++++...    .    +      .+.....
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            3455 5778888887665444322211111122222222334467777777764311    1    1      1122334


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      +..-++.+...|+ |+.|++..++|...      .|.....+..|+.+|..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~-~elAL~~Ak~AV~~------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGD-YELALGVSNTSTEL------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCc-HHHHHHHHHHHHhc------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5556777888888 99999999999887      5667788889999999999999998776655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.69  E-value=1.3  Score=44.98  Aligned_cols=119  Identities=14%  Similarity=0.096  Sum_probs=71.6

Q ss_pred             cHHHHHHHHHHHHHHhhccCchHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhh----hcCC-Cc-------hHHHH
Q psy875           52 QYNLAVDYFNKELRLHARNFPEAVK--TLGEIGDLYELQEKSFEIVQSTHEKALDLA----RQNK-DD-------KLIRT  117 (480)
Q Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~--~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~----~~~~-~~-------~~~~~  117 (480)
                      .++.|+.++++..+.    .+....  ....++.+ ......--+|+....++++-.    .... ..       +....
T Consensus       264 ~~~~a~~~le~L~~~----~p~~~~~~~~~~i~~~-~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          264 LVDFTIDYLKGLTKK----DPIHDIYYKTAMITIL-DHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             GHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh----CCchhHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            368888888886665    333221  11122222 122234456777777776421    1111 11       22233


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNK  177 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~  177 (480)
                      .+...+..+...|+|+-|+++-+++....|.  -..++..|+.+|..+|+|+.|+-.+.-
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            4556677777888888888888888766643  347788888888888888888866544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.69  E-value=0.36  Score=36.83  Aligned_cols=67  Identities=10%  Similarity=0.047  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhcCC---hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          117 TVMRSIKKLYKKHDN---LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .+-+++|+...+..+   ..+++..++..+...+ ...-.+++.||..+.++|+|++|..+.+..+++-++
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            556788888887764   4578888887775443 234678899999999999999999999999988444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.22  E-value=0.48  Score=36.66  Aligned_cols=68  Identities=10%  Similarity=0.034  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhcCC---hHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          116 RTVMRSIKKLYKKHDN---LDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      ..+.+++|+.+.+..+   ..+++..++..+...+. ..-.+++.||..++++|+|++|..|.+..+++-+.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            4566788888888774   45788888887764432 34578899999999999999999999999998444

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.77  E-value=2.2  Score=34.01  Aligned_cols=92  Identities=15%  Similarity=0.106  Sum_probs=69.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh--hhc------------Cc
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRL--HAR------------NF  186 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~~~------------~~  186 (480)
                      .++.+..-.|.|..|+..+.+       .+...+.+.-+.+|...++|.+|+..+++.++-  -++            ++
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~-------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~  110 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK-------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP  110 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred             hhhhhhhhcchHhHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Confidence            467777888999988877753       233455666788999999999999999998832  111            23


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ...-..+..+|.++...|. -++|+.++..+...
T Consensus       111 ~DkEfFy~l~a~lltq~g~-r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          111 GDEEFFESLLGDLCTLSGY-REEGIGHYVRSFGK  143 (242)
T ss_dssp             TCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcC-HHHhhhHhhhhcCC
Confidence            3445667889999999999 99999999887653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.24  E-value=2.7  Score=39.27  Aligned_cols=72  Identities=10%  Similarity=0.051  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhhccCCC
Q psy875          191 KTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS-LEEKLDLNSS  269 (480)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-l~~~~~~~~~  269 (480)
                      .+...++..+...|+ +.+|+..+...+..      .+.....+..+..++...|+..+|++.|+.+.+ +.+.++.+..
T Consensus       172 ~a~~~~~~~~l~~g~-~~~a~~~l~~~~~~------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          172 LAHTAKAEAEIACGR-ASAVIAELEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            445567888889999 99999999888766      555566888999999999999999999999986 5666666433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.24  E-value=0.51  Score=45.60  Aligned_cols=80  Identities=8%  Similarity=0.022  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      .++..||++.+....+..|..+|.+|....|..  +..|+.||.+....|+.-+|+-||-+++-....    ...+..+|
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~--G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P----f~~a~~nL  226 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN--GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP----FPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB--SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC----CHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC--CchHHHHHHHHhcccccHHHHHHHHHHHhcCCC----ChhHHHHH
Confidence            467789999999999999999999999777554  478999999999999999999999999866222    23344455


Q ss_pred             HHHHHH
Q psy875          197 GDLYEL  202 (480)
Q Consensus       197 ~~~~~~  202 (480)
                      ..++..
T Consensus       227 ~~~f~~  232 (497)
T 1ya0_A          227 QKALSK  232 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.12  E-value=1.6  Score=33.34  Aligned_cols=60  Identities=8%  Similarity=-0.031  Sum_probs=38.0

Q ss_pred             cHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHH
Q psy875           91 SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCY  155 (480)
Q Consensus        91 ~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  155 (480)
                      +..+++..+...++..     +.....+++.+|..+.++|+|++|..+.+..+...|....+..+
T Consensus        58 d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           58 DERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             HHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3445666665554421     23345667777788888888888888888777777665544433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.79  E-value=2.5  Score=43.73  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=36.0

Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKE  178 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~a  178 (480)
                      .+....|++++|.+..+..       .....+..+|..+.+.++++.|+.+|.++
T Consensus       660 ~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456778888888776432       11256788999999999999999999875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.64  E-value=2.2  Score=34.51  Aligned_cols=99  Identities=12%  Similarity=-0.007  Sum_probs=57.9

Q ss_pred             hhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc
Q psy875           88 QEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ  167 (480)
Q Consensus        88 ~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~  167 (480)
                      +.|+++.|.+..++.       ++    ...+..+|......|+++-|..+|+++-.          +..+..+|.-.|+
T Consensus        17 ~lg~l~~A~e~a~~l-------~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-------ND----SITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HTTCHHHHHHHHHHH-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred             hcCCHHHHHHHHHHh-------CC----HHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence            347777776654432       11    34577899999999999999999987632          2234455555666


Q ss_pred             HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy875          168 YNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKA  217 (480)
Q Consensus       168 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  217 (480)
                      -+.-.+..+.+..-  ++       +..-..+++.+|+ ++++++.|.+.
T Consensus        76 ~e~L~kla~iA~~~--g~-------~n~af~~~l~lGd-v~~~i~lL~~~  115 (177)
T 3mkq_B           76 VNKLSKMQNIAQTR--ED-------FGSMLLNTFYNNS-TKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHHHHT--TC-------HHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC--cc-------HHHHHHHHHHcCC-HHHHHHHHHHC
Confidence            55443333333221  11       1122344567788 77777766554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.55  E-value=4.7  Score=32.59  Aligned_cols=50  Identities=20%  Similarity=0.161  Sum_probs=40.4

Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      .+....|+++.|.+..++.       +....|..||......|+++-|+.+|+++-.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            3456789999999987654       1236789999999999999999999988643

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.42  E-value=0.51  Score=45.60  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      ..+++..||.+...+..+..|..+|.+|..+    .|.....|+.+|.++..+ |+.-+|+-+|.+++......      
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~----~P~~G~~~nqLavla~~~-~~~l~a~y~y~rsl~~~~Pf------  219 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL----VPSNGQPYNQLAILASSK-GDHLTTIFYYCRSIAVKFPF------  219 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHT-TCHHHHHHHHHHHHSSSBCC------
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHh----CCCCCchHHHHHHHHhcc-cccHHHHHHHHHHHhcCCCC------
Confidence            4567888999999999999999999999999    888888999999995554 88899999999998553211      


Q ss_pred             HHHHHHHHHHHH
Q psy875          116 RTVMRSIKKLYK  127 (480)
Q Consensus       116 ~~~~~~l~~~y~  127 (480)
                      ..+..|+..++.
T Consensus       220 ~~a~~nL~~~f~  231 (497)
T 1ya0_A          220 PAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            234455555554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.87  E-value=1.3  Score=48.01  Aligned_cols=94  Identities=13%  Similarity=0.043  Sum_probs=48.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhccccc---------------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy875          120 RSIKKLYKKHDNLDSACSELHTVLSSDLC---------------------KDLASCYISLAQTYKDNKQYNLAVDYFNKE  178 (480)
Q Consensus       120 ~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---------------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~a  178 (480)
                      +.+|.+|...|++++|..+|+++-.....                     ......|..+..++.+.+.++.++++.+.|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666666666666666666644211100                     111233444555555666666666666666


Q ss_pred             HhhhhcCcHH-HHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875          179 LRLHARNFPE-AVKTLGEIGDLYELQEKPFELVVSTH  214 (480)
Q Consensus       179 l~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~  214 (480)
                      ++....+.+. ....|.++=..+...|+ |++|...+
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~-ye~Ay~aL  961 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGK-FDAAHVAL  961 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCC-SGGGGHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCC-HHHHHHHH
Confidence            6554332222 23345555555666666 66655444

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.83  E-value=1.8  Score=46.87  Aligned_cols=100  Identities=12%  Similarity=-0.044  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRLHAR-------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTH  214 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  214 (480)
                      ..+-+|.+|...|++++|..+|+++-.-...                   ........|..+..++.+.+. ++.+++..
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~-~~~vi~fa  922 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA-YIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            3477999999999999999999986322111                   011123567888899999999 99999999


Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy875          215 EKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKT  255 (480)
Q Consensus       215 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  255 (480)
                      +.|+.... .++.......+..+-+.+...|+|++|...+-
T Consensus       923 ~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          923 LLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99987632 22333445577888899999999999988774

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.79  E-value=6.9  Score=30.23  Aligned_cols=65  Identities=6%  Similarity=-0.050  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhc---cHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          152 ASCYISLAQTYKDNK---QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       152 ~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ..+.+++|.++....   +..+++..++..++.   .+...-.+++.||..++++|+ |.+|..+.+..+++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~-Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhc
Confidence            466777777776654   455788888776663   333566789999999999999 99999999998876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.36  E-value=5.6  Score=37.06  Aligned_cols=68  Identities=6%  Similarity=-0.074  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHcC
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA-RQNK  225 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~-~~~~  225 (480)
                      .+...++..+...|++.+|+..+.+.+..    .|..-..+..+-.++...|+ ..+|+..|++.-... ++.+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~eLG  240 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFE----HPYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLG  240 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhC
Confidence            34556788888999999999999998877    34444577788889999999 999999999988754 3444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=88.00  E-value=5.9  Score=41.63  Aligned_cols=100  Identities=11%  Similarity=0.033  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHH
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASC  154 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~  154 (480)
                      ..+|+.+-.. +...|+.++|...+.+..+.....-. +. ..+|+.|-..|.+.|++++|.+.|++.....-.|+. .+
T Consensus       127 ~~TynaLIdg-lcK~G~leeA~~Lf~eM~~m~~kG~~-Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv-vT  202 (1134)
T 3spa_A          127 QQRLLAFFKC-CLLTDQLPLAHHLLVVHHGQRQKRKL-LT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL-LS  202 (1134)
T ss_dssp             HHHHHHHHHH-HHHHTCHHHHHHHHHHHHHSHHHHTT-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HH
T ss_pred             HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhcCCC-CC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-HH
Confidence            3455555555 33337777777777654432211100 11 346777777777777777777777766544443443 45


Q ss_pred             HHHHHHHHHhhccH-HHHHHHHHHH
Q psy875          155 YISLAQTYKDNKQY-NLAVDYFNKE  178 (480)
Q Consensus       155 ~~~la~~y~~~~~~-~~A~~~~~~a  178 (480)
                      |+.+-..+.+.|+. ++|.+++++.
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM  227 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQM  227 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            66666667776663 5666666654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=87.89  E-value=2.3  Score=44.57  Aligned_cols=103  Identities=10%  Similarity=-0.042  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc---cccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS---DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEA  189 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  189 (480)
                      ......|+.+-..|.+.|+.++|...|.+....   ...++ ..+|+.|-..|.+.|+.++|.+.|++..+.  +-.|. 
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--G~~PD-  199 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA--GLTPD-  199 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCC-
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCc-
Confidence            445567888999999999999999999765432   22233 467888999999999999999999887654  21222 


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy875          190 VKTLGEIGDLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      ..+|..+-..+.+.|+..++|...+++..+
T Consensus       200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            345666666777778723677777776543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.00  E-value=16  Score=32.57  Aligned_cols=130  Identities=9%  Similarity=0.080  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~  107 (480)
                      ...+.+..+.|..+..-|..+++|++|++.+......+  .+....-+.....+-.+|... + ..-......+..++..
T Consensus        26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~-~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-E-VKVDDISVARLVRLIA  103 (312)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CCCSHHHHHHHHHHHT
T ss_pred             ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHH
Confidence            33445566777888888888889999998877665543  211111222222223442221 1 1111223333333333


Q ss_pred             cCC-CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875          108 QNK-DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFN  176 (480)
Q Consensus       108 ~~~-~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~  176 (480)
                      ..+ ..+.... +            ..+|+..-.+.-.  ....-...+..+|..|.+.+++.+|..||-
T Consensus       104 ~~p~~~~~r~~-f------------i~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          104 ELDPSEPNLKD-V------------ITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCTTCTTHHH-H------------HHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCCCchHHH-H------------HHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            221 1111100 0            0112222221100  112234678889999999999999988884

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=84.07  E-value=6.3  Score=35.44  Aligned_cols=67  Identities=13%  Similarity=0.165  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy875          171 AVDYFNKELRLHAR-NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMK  238 (480)
Q Consensus       171 A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  238 (480)
                      ++..|.+|+...+. -......-|..+|..+++.++ +.+|+.++-+|-...+..+....-.++|..+-
T Consensus       276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~-~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~  343 (472)
T 3re2_A          276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKK-YYEAIASWVDAGYVAGKYNYSKDDEEMYKEFH  343 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcch-HHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence            77888888877554 122234567778999999999 99999999999888887776655555555443

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=83.53  E-value=6.9  Score=32.91  Aligned_cols=70  Identities=3%  Similarity=-0.156  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh----hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH----ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLA  106 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~  106 (480)
                      -.++.|..++.+  ..|+.+.|...|++|.++.    .+.+|-......+.+..||..+++.++|....++|+.+.
T Consensus       125 MKGDYyRYlAE~--~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          125 VKSDISRYKLEF--GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHH--ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            344455555553  3455899999999999986    344555555567778888999999999999999998753

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=83.26  E-value=7.4  Score=35.71  Aligned_cols=111  Identities=5%  Similarity=-0.023  Sum_probs=70.9

Q ss_pred             chHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-CcH
Q psy875          112 DKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NFP  187 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~~  187 (480)
                      ...+......|-++++.+|   +|.-|+-.+-..-+..+.+                |+ ..++..|.+|+...+. -..
T Consensus       253 s~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~----------------gr-~~~~~L~~~AI~sa~~~Y~n  315 (550)
T 3u84_A          253 SLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTP----------------GR-PDPLTLYHKGIASAKTYYRD  315 (550)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT----------------TC-CCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCC----------------CC-CCHHHHHHHHHHHHHHHhcc
Confidence            3455555566677777766   3444444443332222221                11 1367778888776544 122


Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy875          188 EAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL  240 (480)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  240 (480)
                      ....-|..+|..+++.++ +.+|+.++-.|-...+..+....-.++|..+-++
T Consensus       316 ~HvYPYtYlgGy~yR~~~-~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI  367 (550)
T 3u84_A          316 EHIYPYMYLAGYHCRNRN-VREALQAWADTATVIQDYNYCREDEEIYKEFFEV  367 (550)
T ss_dssp             CCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred             CCccceeecchhhhhcch-HHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence            234567778999999999 9999999999999888888776666676665444

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.39  E-value=27  Score=32.47  Aligned_cols=101  Identities=11%  Similarity=0.130  Sum_probs=73.4

Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhc-------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875          159 AQTYKDNKQYNLAVDYFNKELRLHAR-------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNK  225 (480)
Q Consensus       159 a~~y~~~~~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~  225 (480)
                      ..+.....+.++|++++++.......             .......+...++..|...++ .++|..+++++-......+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d-~~~a~~~l~~~~~~l~~~~  161 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKND-LVKARDLLDDLEKTLDKKD  161 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhhhccC
Confidence            34555667888999888765332110             123355677788999999999 9999999999988777765


Q ss_pred             C--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          226 D--DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       226 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      +  +......|...+..|...+++..+....-.+...
T Consensus       162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~  198 (393)
T 4b4t_O          162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST  198 (393)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4  3466777778899999999998877666655543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.39  E-value=11  Score=39.97  Aligned_cols=89  Identities=11%  Similarity=-0.065  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhh-c------------------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRLHA-R------------------NFPEAVKTLGEIGDLYELQEKPFELVVSTHE  215 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~-~------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  215 (480)
                      -+-+|.+|...|++++|..+|++|-.-.. .                  ........|..+..++...+- ++.++...+
T Consensus       843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a-~~~vi~fA~  921 (950)
T 4gq2_M          843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA-YIDALEFSL  921 (950)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence            46799999999999999999998532110 0                  011234577889999999999 999999999


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q psy875          216 KALDLARQNKDDKLIRTVMRSMKKLYKKHD  245 (480)
Q Consensus       216 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  245 (480)
                      .|+..+. ..+.......+..+-+.+...|
T Consensus       922 lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g  950 (950)
T 4gq2_M          922 LADASKE-TDDEDLSIAITHETLKTACAAG  950 (950)
T ss_dssp             HHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence            9998653 2344455566666666655544

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.26  E-value=37  Score=31.47  Aligned_cols=99  Identities=11%  Similarity=0.058  Sum_probs=70.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHhccc----c-----------cccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---
Q psy875          123 KKLYKKHDNLDSACSELHTVLSSD----L-----------CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---  184 (480)
Q Consensus       123 ~~~y~~~~~~~~A~~~~~~~l~~~----~-----------~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---  184 (480)
                      ..+.....+.++|++++++.....    .           ......+...++..|...++.++|..+++++-.....   
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            345566788999999998543211    0           0223556677899999999999999999998766443   


Q ss_pred             -CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          185 -NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       185 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                       ++......|...+..|...++ |..+....-.++....
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~-~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKND-FNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhcc
Confidence             345566777777888888888 8887777666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	480
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.004
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-07
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 2e-22
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
           T LHVA+  G+L +V++LL++G    V +     PLH AA  GHT++ + L+   A  N 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN- 60

Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
             +      PLH AA  GHT++V+ L+   A  
Sbjct: 61  -AKAKDDQTPLHCAARIGHTNMVKLLLENNANP 92

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 1e-16
 Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
            T LHVA+  GN+ LV+ LL+    V  +   G+ PLH+AA  GHTDIV  L+  GA PN
Sbjct: 298 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 357

Query: 446 DKVQDSAGWLPLHEAANHGHTDIVQAL 472
                S G  PL  A   G+  +   L
Sbjct: 358 --EVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 6e-15
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 31/128 (24%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           + ET LH+AA  G+  + + LL+    V  +      PLH AA  GHT++V+ L+   A+
Sbjct: 32  KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

Query: 444 PNDK-------------------------------VQDSAGWLPLHEAANHGHTDIVQAL 472
           PN                                      G+ PLH AA +G   + + L
Sbjct: 92  PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151

Query: 473 VSAGAEVS 480
           +   A  +
Sbjct: 152 LERDAHPN 159

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 2e-14
 Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 31/126 (24%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA  G+  +V  LL +     + + +G  PLH  A  GH  +   L+  G   
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

Query: 445 N-------------------------------DKVQDSAGWLPLHEAANHGHTDIVQALV 473
           +                                  +   G+ PLH+AA  GHTDIV  L+
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

Query: 474 SAGAEV 479
             GA  
Sbjct: 351 KNGASP 356

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 2e-13
 Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 35/129 (27%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQ---------------------------------GHP 410
             +T LH AA  G+  +V+ LL+                                     
Sbjct: 65  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 124

Query: 411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
                  G+ PLH AA +G   + + L+   A PN       G  PLH A +H + DIV+
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--AAGKNGLTPLHVAVHHNNLDIVK 182

Query: 471 ALVSAGAEV 479
            L+  G   
Sbjct: 183 LLLPRGGSP 191

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 4e-13
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LHVAA  G + + + LL++          G  PLH A +H + DIV+ L+  G  P
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 191

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVS 474
           +       G+ PLH AA     ++ ++L+ 
Sbjct: 192 HSP--AWNGYTPLHIAAKQNQVEVARSLLQ 219

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
           G + LH AA +G+  +V  LLK G       S G  PL  A   G+  +   L
Sbjct: 330 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G T LH+AA +  + + +SLL+ G     +   G  PLH AA  GH ++V  L+S  A+ 
Sbjct: 198 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 257

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N  + + +G  PLH  A  GH  +   L+  G  V
Sbjct: 258 N--LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 83.0 bits (204), Expect = 5e-18
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 318 SHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT 377
            HF+         L+      I +   +   ++VR+LL L  A    +       +  + 
Sbjct: 29  QHFISANELSLMTLSYKEAIHIFLPGTK-NMEQVRQLLCLYYAHYNRNA-----KQLWSD 82

Query: 378 SLLEKPRGETALHVAAARGN---LTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIV 434
           +  +  + E    VAA  G    L  +  LL     VKV  +  +     AA +GH  ++
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142

Query: 435 QALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
             L          +  +  +     AA +GH  ++  L       
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.4 bits (148), Expect = 6e-11
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG--HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
              A  +AA  G+L ++  L +      + +  +  +     AA +GH  ++  L     
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 443 DPND-KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS 480
                 +Q    +     A   GH +++  L+     ++
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.6 bits (138), Expect = 1e-09
 Identities = 20/162 (12%), Positives = 40/162 (24%), Gaps = 21/162 (12%)

Query: 325 NDKDSNLNLYNIESITISRNRLGAQEVRKLL---------SLLNADLLVHLNLSATLETP 375
            +  + +   N  +   +    G   V   L         + ++        ++  +   
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 245

Query: 376 TTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQ 435
              L E      A  ++   G   LV           +Q       L    +    D ++
Sbjct: 246 VNRLKE---MHDAFKLSNPDGVFDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIR 296

Query: 436 ALVSAGADPNDK---VQDSAGWLPLHEAANHGHTDIVQALVS 474
            L+S                    L  A   G+      L+S
Sbjct: 297 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 379 LLEKPR-GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
           LL+ P     A       G   +   + +  +    +          +   G  D+V   
Sbjct: 216 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN----RLKEMHDAFKLSNPDGVFDLV--- 268

Query: 438 VSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
                  ++ +Q       L    +    D ++ L+S   
Sbjct: 269 -----TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 303

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 77.9 bits (190), Expect = 1e-16
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 381 EKPRGETALHVAAARGNLTLVQSL-LKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS 439
           EK +G TALH AA   N+ +V+ L  ++G     QD  G  P+  AA  G  ++V  L+ 
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 440 AGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
            GA       D+        A  + H +IV   
Sbjct: 243 QGASVE--AVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 386 ETALHVA-AARGNLTLVQSLLKQGHPVKVQDSA-GWLPLHEAANHGHTDIVQALV----- 438
           E+ + +   A G+  + + + ++   V + D       LH  A++   +  + L+     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 439 ---SAGADPNDKVQDSAGWLPLHEAANHGHTD 467
              +AGAD N    D     PL  A       
Sbjct: 59  ECIAAGADVNAM--DCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 420 LPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
           + LH  A  G   I + +     +  D          LH  A++   +  + L+   A+
Sbjct: 4   IKLHTEAA-GSYAITEPITRESVNIID---PRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 407 QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT 466
                  +   G   LH AA   +  IV+ LV       DK QD  G  P+  AA  G  
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPIMLAAQEGRI 234

Query: 467 DIVQALVSAGAEV 479
           ++V  L+  GA V
Sbjct: 235 EVVMYLIQQGASV 247

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 385 GETALHVAAARGNLTLVQSLL--------KQGHPVKVQDSAGWLPLHEAANHGHTDIVQA 436
             T LH  A+  +    + L+          G  V   D     PL  A       +V  
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA- 91

Query: 437 LVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
                A  +  + + +    LH+AA +    ++  ++++ 
Sbjct: 92  -YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST 130

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 3e-16
 Identities = 31/134 (23%), Positives = 42/134 (31%), Gaps = 41/134 (30%)

Query: 385 GETALHVAAARGNLTLVQ--------------------------------------SLLK 406
           G TAL  AA +G++ +++                                       LL 
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 407 QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGH 465
            G  V V+   G  PL  A    H  +VQ L+     + ND   DS G   L  A     
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT--DSDGKTALLLAVELKL 265

Query: 466 TDIVQALVSAGAEV 479
             I + L   GA  
Sbjct: 266 KKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 1e-12
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQ-GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 442
           RG+T L +A  + +L LVQ LL+Q    +   DS G   L  A       I + L   GA
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

Query: 443 DPNDK 447
             +  
Sbjct: 278 STDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 1e-10
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ 470
            L +A  +   D+VQ L+  GA+ N + ++  GW PLH A      DIV+
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVE 56

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDS-AGWLPLHEAANHGHTDIVQALVSAGAD 443
               L  A    ++ LVQ LL+ G  V  Q+   GW PLH A      DIV+ L+     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HG 62

Query: 444 PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
            +  ++   G  P   AA  G   +++  +S G
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 7e-07
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 13/108 (12%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG----------HPVKVQDSAGWLPLHEAANHGHTDIV 434
           G TA   AA  G +  ++ L K+G             +     G   L +AA  GH +++
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 435 QALVS-AGADPN--DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           + L+   GAD N  D +  +A    L  + +     I   L+  GA+V
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 7e-07
 Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 385 GETALHVAAARGNLTLVQSLL---------------------------------KQGHPV 411
           G T LH A       +V+ LL                                  +G  V
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

Query: 412 KVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDK--------VQDSAGWLPLHEAANH 463
              D  G+    EAA +G    ++ L   GA+ N +             G   L +AA  
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 464 GHTDIVQALVS-AGAEV 479
           GH ++++ L+   GA+V
Sbjct: 159 GHVEVLKILLDEMGADV 175

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 1e-15
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 389 LHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKV 448
           L  A    +L++VQ LL+ G  V  Q  +G   LH A+  G   +V+ LV +GAD +  +
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--L 205

Query: 449 QDSAGWLPLHEAANHGHTDIVQ 470
           ++     PL  A +    DI++
Sbjct: 206 KNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQ 435
           G +ALH A+ RG L LV++L++ G    +++     PL  A +    DI++
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 418 GWLPLHEAANHGHTDIVQALVS----AGADPNDKVQDSAGWLPLHEAANHGH 465
           G  PLH A   G+   V  LV+     G + +  + ++    PLH A     
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 385 GETALHVAAARGNLTLVQSLLKQ----GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSA 440
           G+T LH+A  +GNL  V  L+      G  + + ++    PLH A       +V+ LV+A
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 441 GADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           GA P    +        H A  H     ++AL+ + A
Sbjct: 63  GASPMALDRHG--QTAAHLACEHRSPTCLRALLDSAA 97

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
             PL  A  +    +VQ L+  GA+ N ++    G   LH A+  G   +V+ LV +GA+
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--GSSALHSASGRGLLPLVRTLVRSGAD 202

Query: 479 VS 480
            S
Sbjct: 203 SS 204

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)

Query: 453 GWLPLHEAANHGHTDIVQALVS----AGAEV 479
           G  PLH A   G+   V  LV+     G E+
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL 33

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 9e-14
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             TA+H AAA+GNL ++  LL       +QD+ G  PLH A +    +  + LVS GA  
Sbjct: 136 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 195

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALV 473
              +++     PL  A   G   I++ +V
Sbjct: 196 Y--IENKEEKTPLQVAKG-GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
             TALH A + G+  +V+ LL+ G PV  +D AGW PLH AA+ G  +IV+AL+  GA  
Sbjct: 37  SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 96

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
           N    +  G  PLH AA+    +I   L+  GA  
Sbjct: 97  N--AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 129

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALHVAAA+G   +++ L++  + V ++D  GW PLH AA+ G  +  + LV    D 
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

Query: 445 NDKVQDSAGWLPLHEAA--NHGHTDIVQA 471
                +  G      A     G+ + +Q 
Sbjct: 259 E--AVNKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 9e-11
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 404 LLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH 463
           L            +G   LH AA  G+T++++ L+ A  D N K  D  GW PLH AA+ 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD--GWTPLHAAAHW 242

Query: 464 GHTDIVQALVSAGAEVS 480
           G  +  + LV    ++ 
Sbjct: 243 GKEEACRILVENLCDME 259

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 402 QSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA 461
           +  + +    KV+   G      A + G T+ V  L+  GAD N    +  G   LH+A 
Sbjct: 25  EPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADIN--YANVDGLTALHQAC 81

Query: 462 NHGHTDI 468
              + D+
Sbjct: 82  IDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI 433
                  A + G+   V  LL++G  +   +  G   LH+A    + D+
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.3 bits (152), Expect = 4e-12
 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TALH AAA  N   V  LL        QD     PL  AA  G  +  +AL+   A+ 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 445 NDKVQDSAGWLPLHEAANHGHTDIVQAL 472
              + D    LP   A+   H DIV+ L
Sbjct: 183 E--ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.9 bits (120), Expect = 6e-08
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 433 IVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL 472
           ++  L++ GA+ N    D  G   LH AA     D  + L
Sbjct: 4   VISDLLAQGAELNAT-MDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 400 LVQSLLKQGHPV-KVQDSAGWLPLHEAANHGHTDIVQAL 437
           ++  LL QG  +    D  G   LH AA     D  + L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 404 LLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANH 463
           L+     +   D++G   LH AA   +T+ V  L+   A+ +   QD     PL  AA  
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA--QDDKDETPLFLAARE 166

Query: 464 GHTDIVQALVSAGAEV 479
           G  +  +AL+   A  
Sbjct: 167 GSYEASKALLDNFANR 182

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 8e-12
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 385 GETALHVAAARGNLTLVQSLLKQ---GHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
            E+  +        +++++L  +    + +  QDS G   L+ AA  G+  IV AL+  G
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

Query: 442 ADPNDKVQDSAGWLPLHEAA 461
           ADP   + + +G  P+   A
Sbjct: 283 ADPF--IANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 9e-09
 Identities = 33/248 (13%), Positives = 71/248 (28%), Gaps = 7/248 (2%)

Query: 239 KLYKKHDKFTELEQIKTELKSLEEKLDLNSSSDEEDTILEDSPNIGDDINLEELSDLNSA 298
           KL     +    E  +       +  + NS     +   +          + +       
Sbjct: 38  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 97

Query: 299 DEESKEDQDKRT------NRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVR 352
           +     D+   T      +         L+K        +      +  +   +   +  
Sbjct: 98  NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 157

Query: 353 KLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK 412
              +LL+      +   +   T    ++           A    ++ +   + KQ  P++
Sbjct: 158 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 217

Query: 413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPND-KVQDSAGWLPLHEAANHGHTDIVQA 471
              +      ++        I++ L       N    QDS G   L+ AA  G+  IV A
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 472 LVSAGAEV 479
           L+  GA+ 
Sbjct: 278 LLDYGADP 285

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 34/127 (26%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSA----------------------------- 417
             L  ++  G   LVQ ++ +     + +                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 418 ----GWLPLHEAANHGHTDIVQALVSAGADPNDK-VQDSAGWLPLHEAANHGHTDIVQAL 472
               GW PLH AA+  +  + + LV +GA        D        E    G+T   Q L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 473 VSAGAEV 479
                ++
Sbjct: 123 YGVQEKM 129

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 419 WLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
             PLH A       +++ L+ AGADP    +   G  PL  A    +  + + L + GA
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG---HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
           G+TALH+A    +   +  LL        + +Q+  G   LH AA  G    V+ L +  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-- 66

Query: 442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           A     V +  G   LH A           L+    
Sbjct: 67  AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 415 DSAGWLPLHEAANHGHTDIVQALVSAGADPND-KVQDSAGWLPLHEAANHGH 465
              G   LH A  H H   +  L+   A      +Q+  G   LH AA  G 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE 57

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
            T LH+A      ++++ LLK G     +   G  PL  A    +  + + L + GA   
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

Query: 446 D 446
           +
Sbjct: 253 E 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 12/107 (11%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G+TALH+AA  G  + V+ L   G  V V +  G   LH A           L+      
Sbjct: 45  GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104

Query: 445 N------------DKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
                        D   D++      ++  +   +          ++
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 450 DSAGWLPLHEAANHGHTDIVQALVSAGAEV 479
              G   LH A  H H   +  L+   A  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGH 35

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 9e-11
 Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 40/131 (30%)

Query: 387 TALHVAAARGNLTLVQSLLKQGH------PVKVQDSAGWLPLHEAA---NHGHTDIVQAL 437
            +L  A    ++  +      G       P+          LH A    +     IV  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 438 VSAGADPNDK-------------------------------VQDSAGWLPLHEAANHGHT 466
           V    + + +                               + + +G  PL  A    H 
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 467 DIVQALVSAGA 477
              + L  A +
Sbjct: 128 HCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 7/66 (10%)

Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKV----QDSAGWLPLHEAA---NHGHTDIVQALV 473
            L EA        +    + G D  +K+            LH A    +     IV  LV
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 474 SAGAEV 479
                +
Sbjct: 69  QNSGNL 74

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 407 QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDK 447
               +++ + +G  PL  A    H    + L  A +   + 
Sbjct: 103 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 143

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHP-VKVQDSAGWLPLHEAANHGHTDIVQALVSA-GA 442
            +  LH AA+ G+L L++ L   G   V  QD  GW PL  A   GH D    LV   GA
Sbjct: 138 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 197

Query: 443 DPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA 477
           + +  + D+ G      A N     + +  ++   
Sbjct: 198 EYD--LVDNKGAKAEDVALNE---QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAG 476
           PLH+A        VQ L+ +      + +D  G +PLH + +    +I   L+S  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 387 TALHVAAARGNLTLVQSLLK-QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPN 445
             LH A        VQ LL  +   +  +D  G +PLH + +    +I   L+S   + N
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 446 DKVQDSAGWLPLHEAANHGH 465
                          A    
Sbjct: 62  LDDYPDDSGWTPFHIACSVG 81

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 385 GETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGAD 443
           G T L  A A G+      L+ K G    + D+ G      A N     + +  ++   D
Sbjct: 172 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVD 228

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 7e-10
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 388 ALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPND 446
            LH+A+  G L +V+ L+  G      +   G   LH A +  + D+V  L+  GAD N 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN- 172

Query: 447 KVQDSAGWLPLHEAANHGHTDIVQALVSAGAE 478
                 G+ P         T I Q L     E
Sbjct: 173 -RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 9e-10
 Identities = 21/67 (31%), Positives = 26/67 (38%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP 444
           G TALH+A    N  LV  LLK G  V      G+ P         T I Q L     + 
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

Query: 445 NDKVQDS 451
              + +S
Sbjct: 205 LQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 418 GWLPLHEAANHGHTD----IVQALVSAGADPNDKVQDSAGWLPLHEAANHGH 465
           G   LH A  H        +++ +    A  N   Q++    PLH A     
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN--FQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 385 GETALHVAAARGNLT----LVQSLLKQGHPVKVQDSAGWLPLHEAANHGH 430
           G++ LH+A           +++ +      +  Q++    PLH A     
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-07
 Identities = 24/122 (19%), Positives = 36/122 (29%), Gaps = 31/122 (25%)

Query: 385 GETALHVAAARGNLTLVQSLLKQG-------------------------------HPVKV 413
               L  AAARG +  V++LL+ G                                    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV 473
                 L            +   +V   A     V+D+ G LP+  A   GH D+ + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 474 SA 475
           +A
Sbjct: 123 AA 124

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 38/257 (14%), Positives = 74/257 (28%), Gaps = 26/257 (10%)

Query: 34  KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNF--PEAVKTLGEIGDLYELQEKS 91
           ++ A   +  A  Y+  K+ NLA D F K      +     EA  T  E    ++    S
Sbjct: 34  EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93

Query: 92  FEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDL 151
              V S          + +  +         + L     +   A                
Sbjct: 94  VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153

Query: 152 AS----CYISLAQTYKDNKQYNLAVDYFNKELRLHARNF---PEAVKTLGEIGDLYELQE 204
            +    C+I  A     + QY  A D ++K ++    N            + G       
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213

Query: 205 KPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLY-----------KKHDKFTELEQI 253
                   T ++         D +    +   +  +            K+ D F  L++ 
Sbjct: 214 DAVA-AARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272

Query: 254 KTEL-----KSLEEKLD 265
           K  +     +S++++ D
Sbjct: 273 KITILNKIKESIQQQED 289

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 407 QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT 466
            G  V  +D      LH A  H H ++V+ L+  GAD +   Q          + ++G+ 
Sbjct: 89  HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFDISIDNGNE 146

Query: 467 DIVQAL 472
           D+ + L
Sbjct: 147 DLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQAL 437
             TALH A    +  +V+ L+K G  V  Q          + ++G+ D+ + L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 421 PLHEAANHGHTDIVQALVSAGADPN 445
            L EAA  G  D V+ L++ GA   
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT 29

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 456 PLHEAANHGHTDIVQALVSAGAEV 479
            L EAA  G  D V+ L++ GA  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPF 28

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 407 QGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT 466
            G  V V D  G LP+H A   GHT +V   ++A +D +   +D+ G  PL  A   G  
Sbjct: 90  HGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAAESDLH--RRDARGLTPLELALQRGAQ 146

Query: 467 DIVQALVS 474
           D+V  L  
Sbjct: 147 DLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 384 RGETALHVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGH 430
           R    L  AAARG++  V+ LL ++       +  G   L        
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 4e-06
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 421 PLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGH 465
            L  AA  G  + + +L+    + N   Q+  G   L        
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVN--AQNGFGRTALQVMKLGNP 46

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG 441
             V  ++  G      A  +G  ++V  + + G
Sbjct: 124 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH 430
             L  AAARG+L  + SLL+    V  Q+  G   L        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 448 VQDSAGWLPLHEAANHGHTDIVQALVSAG 476
            ++  G      A  +G  ++V  + + G
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 456 PLHEAANHGHTDIVQALVSAGAEV 479
            L  AA  G  + + +L+     V
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNV 27

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 384 RGETALHVAAARGNLTLVQSLLKQG 408
           +G+TA  +A   G   +V  +   G
Sbjct: 132 KGDTACDLARLYGRNEVVSLMQANG 156

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 23/192 (11%), Positives = 43/192 (22%), Gaps = 26/192 (13%)

Query: 35  DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDL--YELQEKSF 92
           D+    +  A+ +   +      D + K L      +    K   ++ +           
Sbjct: 18  DMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDL-EYALDKKVEQDLWNHAFKNQI---- 69

Query: 93  EIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA 152
                        A+   +             L            EL TV + DL     
Sbjct: 70  -------TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL--PCR 120

Query: 153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVS 212
                L          +  V   +                L  +GD+   + +      S
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCS------YICQHCLVHLGDIARYRNQ-TSQAES 173

Query: 213 THEKALDLARQN 224
            +  A  L   N
Sbjct: 174 YYRHAAQLVPSN 185

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 19/171 (11%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 31  DLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK 90
           +L       +++         +  LA D      +    +   ++     + +    +++
Sbjct: 99  ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL--YLAEQKLDEKQ 156

Query: 91  SFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD 150
           + E+++   EK+          +     +     + +   +             + L + 
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN---------TSLAEH 207

Query: 151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYE 201
           L+     L + Y      + A   F   +  +  NF E    L E+  L +
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	480
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.83
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.83
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.81
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.81
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.81
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.79
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.79
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.79
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.78
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.78
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.78
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.76
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.75
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.75
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.73
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.7
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.68
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.67
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.67
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.67
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.66
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.49
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.44
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.38
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.38
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.31
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.31
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.3
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.3
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.27
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.26
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.23
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.02
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.99
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.96
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.86
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.81
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.57
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.42
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.23
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.23
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.1
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.07
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	91.05
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	91.01
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	88.51
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	88.07
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	87.82
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.22
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.41

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.9e-25  Score=199.68  Aligned_cols=98  Identities=29%  Similarity=0.389  Sum_probs=91.0

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875          380 LEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQ-DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH  458 (480)
Q Consensus       380 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~  458 (480)
                      .++.+|.||||+|+..++.+++++|++.+++++.. +..|.||||+|+..|+.+++++|+++|++++  .+|..|.||||
T Consensus       153 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin--~~d~~g~t~L~  230 (255)
T d1oy3d_         153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG  230 (255)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH
T ss_pred             cccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC--CCCCCCCCHHH
Confidence            34667999999999999999999999999998764 5789999999999999999999999999999  66999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC
Q psy875          459 EAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +|+..++.+++++|+++||+-
T Consensus       231 ~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         231 SALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHTSSCHHHHHHHHHTTCCC
T ss_pred             HHHHCCCHHHHHHHHHcCCCC
Confidence            999999999999999999974

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=190.17  Aligned_cols=153  Identities=25%  Similarity=0.256  Sum_probs=136.0

Q ss_pred             hhccCCccchhhhccCCCcC-----------CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcc
Q psy875          310 TNRKRAPRSHFLIKRNDKDS-----------NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTS  378 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~  378 (480)
                      ++..|+||||+|+..+..++           ........++++.++..|+.+++++|+++|++++..+            
T Consensus        33 ~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d------------  100 (223)
T d1uoha_          33 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN------------  100 (223)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             cCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeC------------
Confidence            45569999999988876643           3445566788899999999999999999999987653            


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q psy875          379 LLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLH  458 (480)
Q Consensus       379 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~  458 (480)
                          ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+..|.+++  ..|..|+||||
T Consensus       101 ----~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~--~~d~~g~TpL~  174 (223)
T d1uoha_         101 ----QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN--IQDTEGNTPLH  174 (223)
T ss_dssp             ----TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTCCCHHH
T ss_pred             ----CCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee--eccCCCCceec
Confidence                459999999999999999999999999999999999999999999999999999999999999  56999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Q psy875          459 EAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       459 ~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +|+..|+.+++++|+++|+|++
T Consensus       175 ~Aa~~g~~~~v~~LL~~Gad~~  196 (223)
T d1uoha_         175 LACDEERVEEAKLLVSQGASIY  196 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSC
T ss_pred             cccccCcHHHHHHHHHCCCCCC
Confidence            9999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.5e-25  Score=172.75  Aligned_cols=120  Identities=27%  Similarity=0.328  Sum_probs=109.9

Q ss_pred             CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875          336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD  415 (480)
Q Consensus       336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~  415 (480)
                      ..++|+.|+..|+.++|++|+++|+|++..+                ..|.||+|+|+ .|+.+++++|+++|++++.++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~----------------~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~   65 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPN----------------SYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD   65 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCC----------------SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccc----------------ccccccccccc-ccccccccccccccccccccc
Confidence            4578999999999999999999999998653                35999999775 799999999999999999998


Q ss_pred             CCCC-hHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          416 SAGW-LPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       416 ~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      ..|. ||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..|+.+++++|++
T Consensus        66 ~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          66 PATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccccc--cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8775 69999999999999999999999999  669999999999999999999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-24  Score=172.23  Aligned_cols=125  Identities=25%  Similarity=0.270  Sum_probs=111.7

Q ss_pred             CchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875          336 IESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD  415 (480)
Q Consensus       336 ~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~  415 (480)
                      +.++|+.|+..|+.++|++|+++|+|++..+                .+|.||||+|+..|+.+++++|++.|++++.+|
T Consensus         1 pl~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d----------------~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d   64 (130)
T d1ycsb1           1 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPN----------------DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD   64 (130)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC----------------TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCccccc----------------ccccccccccccccccccccccccccccccccc
Confidence            4578999999999999999999999998764                459999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH--HHcCCHHHHHHHHHcCC
Q psy875          416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA--ANHGHTDIVQALVSAGA  477 (480)
Q Consensus       416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A--~~~~~~~~~~~Ll~~ga  477 (480)
                      ..|+||||+|+.+|+.+++++|+++|++++.. ....|.||++++  +..|+.+++++|++.+.
T Consensus        65 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~-~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          65 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             ccCcccccccchhhHHHHHHHHHHcCCCcccc-cCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            99999999999999999999999999999942 234688887765  57789999999987643

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.8e-25  Score=171.64  Aligned_cols=107  Identities=27%  Similarity=0.337  Sum_probs=100.4

Q ss_pred             chHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy875          337 ESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS  416 (480)
Q Consensus       337 ~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~  416 (480)
                      .+|+++|++.|+.++|++|+++|+|++..+                ..|.||||+|+..|+.+++++|++.|+++|.+|.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~----------------~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~   66 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTL----------------EGGRKPLHYAADCGQLEILEFLLLKGADINAPDK   66 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCS----------------SSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccc----------------ccccccccccccccccccccccccccceeeeccc
Confidence            468999999999999999999999998654                3599999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          417 AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       417 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                      .|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|.
T Consensus        67 ~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~--~~d~~G~t~l~~a~  109 (118)
T d1myoa_          67 HHITPLLSAVYEGHVSCVKLLLSKGADKT--VKGPDGLTALEATD  109 (118)
T ss_dssp             SCSCHHHHHHTTTCCHHHHHHHTTCCCSS--SSSSSTCCCCCTCS
T ss_pred             ccccchhhhhhcCchhhhhhhhcccccce--eeCCCCCCHHHHHh
Confidence            99999999999999999999999999999  56999999999884

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.6e-22  Score=163.67  Aligned_cols=130  Identities=18%  Similarity=0.126  Sum_probs=114.4

Q ss_pred             chHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCC
Q psy875          337 ESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAAR---GNLTLVQSLLKQGHPVKV  413 (480)
Q Consensus       337 ~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~g~~~~~  413 (480)
                      ...++.|++.++...+..++..|+|++....          ....+..|+||||+|+..   ++.+++++|+++|+++|.
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~----------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~   76 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIP----------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK   76 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCC----------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCC----------cccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh
Confidence            3456788999999999999999998865422          122344599999999985   678999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          414 QDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       414 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      +|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.+++++|++.|+.
T Consensus        77 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          77 QTGKGSTALHYCCLTDNAECLKLLLRGKASIE--IANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhhhhccccccccccccccccccccccCcccc--ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999  6699999999999999999999999997764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=8.2e-23  Score=184.68  Aligned_cols=161  Identities=22%  Similarity=0.246  Sum_probs=134.0

Q ss_pred             cCCccchhhhccCCC-------------------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-
Q psy875          313 KRAPRSHFLIKRNDK-------------------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-  372 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-  372 (480)
                      .|+||||+|+..|..                   ++|..+..+.|||++|+..|+.++|++|+++|+|++..+..+.+. 
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            489999999877755                   466778899999999999999999999999999987643211110 


Q ss_pred             ---------------------------------------------------------------cCCCccccCCCCCchHH
Q psy875          373 ---------------------------------------------------------------ETPTTSLLEKPRGETAL  389 (480)
Q Consensus       373 ---------------------------------------------------------------~~~~~~~~~~~~g~~~l  389 (480)
                                                                                     .........+..|.|||
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence                                                                           01111122345689999


Q ss_pred             HHHHHcCCHHHHHHHH-hcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy875          390 HVAAARGNLTLVQSLL-KQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDI  468 (480)
Q Consensus       390 ~~a~~~~~~~~~~~ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~  468 (480)
                      |+++..++.++++.++ ..+.+++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||||+|+..|+.++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin--~~d~~G~T~L~~A~~~~~~~i  269 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE--AVDATDHTARQLAQANNHHNI  269 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCSSSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC--CcCCCCCCHHHHHHHcCCHHH
Confidence            9999999999998755 5688999999999999999999999999999999999999  669999999999999999999


Q ss_pred             HHHHHHc
Q psy875          469 VQALVSA  475 (480)
Q Consensus       469 ~~~Ll~~  475 (480)
                      +++|++.
T Consensus       270 v~lL~~c  276 (277)
T d2fo1e1         270 VDIFDRC  276 (277)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9999863

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-23  Score=179.88  Aligned_cols=147  Identities=24%  Similarity=0.208  Sum_probs=108.9

Q ss_pred             CCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-----------------------cCCCccccCCCCCc
Q psy875          330 NLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-----------------------ETPTTSLLEKPRGE  386 (480)
Q Consensus       330 ~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~  386 (480)
                      |..+..+.||||+|+..|+.+++++|++.|++++..+..+.+.                       ............|.
T Consensus        33 n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (221)
T d1iknd_          33 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  112 (221)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             ccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            3444555666666666666666666666666655432211100                       11222223344588


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCC
Q psy875          387 TALHVAAARGNLTLVQSLLKQGHPVKVQD-SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGH  465 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~  465 (480)
                      ||||.|+..++.+++++++..|+.++..+ ..|+||||+|+..|+.+++++|+++|+|++  .+|..|+||||+|+..++
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~--~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGGGCTTSSC
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc--ccCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999887765 569999999999999999999999999999  569999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy875          466 TDIVQALVSAGAE  478 (480)
Q Consensus       466 ~~~~~~Ll~~ga~  478 (480)
                      .+++++|++.+.+
T Consensus       191 ~~~~~~l~~~~~~  203 (221)
T d1iknd_         191 TRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHHTTSCG
T ss_pred             HHHHHHHHHcCCc
Confidence            9999999887654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-22  Score=163.83  Aligned_cols=144  Identities=26%  Similarity=0.299  Sum_probs=126.5

Q ss_pred             ccCCc-cchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHH
Q psy875          312 RKRAP-RSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALH  390 (480)
Q Consensus       312 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~  390 (480)
                      ..|+. .+.+++..++.++|..+..+.+|+++|+. |+.+++++|+++|++++....                .|.+|++
T Consensus        11 ~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~----------------~~~~~l~   73 (156)
T d1bd8a_          11 ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDT----------------SGTSPVH   73 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCT----------------TSCCHHH
T ss_pred             HcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccc----------------ccccccc
Confidence            34443 33455666778888888899999998874 888999999999999876533                4899999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q psy875          391 VAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ  470 (480)
Q Consensus       391 ~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~  470 (480)
                      .++..++.++++.+++.|+++|.+|..|+||||+|+..|+.+++++|+ .|++++  ..|..|+||||+|+..|+.++++
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~--~~d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH--RRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT--CCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCeeecccccccccccccccc-cccccc--ccCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999887 689998  56999999999999999999999


Q ss_pred             HHHHc
Q psy875          471 ALVSA  475 (480)
Q Consensus       471 ~Ll~~  475 (480)
                      +|+++
T Consensus       151 ~Ll~h  155 (156)
T d1bd8a_         151 ILQGH  155 (156)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            99976

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=174.90  Aligned_cols=142  Identities=24%  Similarity=0.213  Sum_probs=126.5

Q ss_pred             CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875          314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA  393 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~  393 (480)
                      |...+...+...+.+++..+..+.+|++.|+..|+.+++++|+++|++++..+.                .|.||||+++
T Consensus        81 ~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~----------------~~~t~L~~a~  144 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH----------------YEATAMHRAA  144 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------TSCCHHHHHH
T ss_pred             cccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCC----------------CCCccchhhh
Confidence            333344444556678888888999999999999999999999999999886543                4999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy875          394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALV  473 (480)
Q Consensus       394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  473 (480)
                      ..++..++++|+..|.+++.+|..|+||||+|+..|+.+++++|++.|++++  .+|..|+||||+| ..|+.++++.|+
T Consensus       145 ~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~--~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         145 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY--IENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             hcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC--CCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999  5699999999998 479999999998


Q ss_pred             H
Q psy875          474 S  474 (480)
Q Consensus       474 ~  474 (480)
                      +
T Consensus       222 ~  222 (223)
T d1uoha_         222 E  222 (223)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.2e-21  Score=171.61  Aligned_cols=152  Identities=24%  Similarity=0.277  Sum_probs=77.5

Q ss_pred             CCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc----------------------ccCCCccccCCC
Q psy875          326 DKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT----------------------LETPTTSLLEKP  383 (480)
Q Consensus       326 ~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~----------------------~~~~~~~~~~~~  383 (480)
                      +.+++..+.++.+||++|+..|+.+++++|+++|++++........                      ..........+.
T Consensus        24 ~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (229)
T d1ixva_          24 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN  103 (229)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCT
T ss_pred             CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455667777888888888888888888888888877543211000                      001111122223


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCCcHHHHHHH
Q psy875          384 RGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAG-ADPNDKVQDSAGWLPLHEAAN  462 (480)
Q Consensus       384 ~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~tpl~~A~~  462 (480)
                      .+.+|++.++..++.++++.|+..|.+.+..|..|+||||+|+..|+.+++++|++.| .+++  .+|..|+||||+|+.
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in--~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLFHALA  181 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSC--CCCTTSCCHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccc--ccccccCCchhhhcc
Confidence            3444444444444444444444444444444444444444444444444444444443 2333  234444444444444


Q ss_pred             cCCHHHHHHHHH-cCCCC
Q psy875          463 HGHTDIVQALVS-AGAEV  479 (480)
Q Consensus       463 ~~~~~~~~~Ll~-~ga~~  479 (480)
                      .|+.+++++|++ .|+|+
T Consensus       182 ~~~~~~v~~Ll~~~gad~  199 (229)
T d1ixva_         182 EGHGDAAVLLVEKYGAEY  199 (229)
T ss_dssp             TTCHHHHHHHHHHHCCCS
T ss_pred             cccHHHHHHHHHhcCCCC
Confidence            444444444443 24443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.1e-22  Score=162.28  Aligned_cols=122  Identities=25%  Similarity=0.303  Sum_probs=95.3

Q ss_pred             cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy875          333 LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVK  412 (480)
Q Consensus       333 ~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~  412 (480)
                      +..+.+++++|+..++.++++.++.........                +..+.++++.++...+.++++.++..|++++
T Consensus        31 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (153)
T d1awcb_          31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR----------------TKVDRTPLHMAASEGHANIVEVLLKHGADVN   94 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC----------------CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             ccCCCcccccccccccccccccccccccccccc----------------ccccccccccccccccceeeecccccCCccc
Confidence            344455555555555555555555544443322                2235667777777778888888888999999


Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy875          413 VQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL  472 (480)
Q Consensus       413 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  472 (480)
                      .+|..|+||||+|+..|+.+++++|+++|++++  ..|.+|.||||+|+..|+.+++++|
T Consensus        95 ~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~--~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccCchHHHhhhhcchhheeeeccccccCCc--ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999999999999999999999  5699999999999999999999876

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=9.8e-22  Score=175.23  Aligned_cols=152  Identities=26%  Similarity=0.303  Sum_probs=130.8

Q ss_pred             ccCCccchhhhccCCCc--------------CCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCc
Q psy875          312 RKRAPRSHFLIKRNDKD--------------SNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTT  377 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~  377 (480)
                      ..|+||||+|+..+..+              ++..+..+.|||++|+..|+.+++++|+++|++++..+           
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d-----------   75 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE-----------   75 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC-----------
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccc-----------
Confidence            35899999998876653              34556778899999999999999999999999998754           


Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcC-----------------------------------------------CC
Q psy875          378 SLLEKPRGETALHVAAARGNLTLVQSLLKQG-----------------------------------------------HP  410 (480)
Q Consensus       378 ~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g-----------------------------------------------~~  410 (480)
                           .+|.||||+|+..++.++++.|++.+                                               .+
T Consensus        76 -----~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
T d1oy3d_          76 -----RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ  150 (255)
T ss_dssp             -----TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred             -----cccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcc
Confidence                 35999999999999999999987532                                               22


Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          411 VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       411 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++.+|..|.||||+|+..++.+++++|++++++++. ..+..|.||||+|+..|+.+++++|+++|++|+
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-PEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccccccCcccccccccccccccccchhcccccccc-cccccccccccccccccHHHHHHHHHHCCCCCC
Confidence            344567799999999999999999999999999985 356789999999999999999999999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=2.1e-22  Score=173.89  Aligned_cols=146  Identities=27%  Similarity=0.206  Sum_probs=118.2

Q ss_pred             CCCcCCC-CcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-------------------------------
Q psy875          325 NDKDSNL-NLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-------------------------------  372 (480)
Q Consensus       325 ~~~~~~~-~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-------------------------------  372 (480)
                      .+.++|. .+.++.+++|+|+..|+.+++++|++.|++++.........                               
T Consensus        11 ~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (209)
T d1ot8a_          11 QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG   90 (209)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTC
T ss_pred             CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445554 35667777777888888888888888888776542211110                               


Q ss_pred             --------------------cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHH
Q psy875          373 --------------------ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTD  432 (480)
Q Consensus       373 --------------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  432 (480)
                                          ..+......+..|.|||++++..+...+++.+++.+.+++.+|..|.||||+|+..|+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_          91 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE  170 (209)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHH
Confidence                                122222344667899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy875          433 IVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQAL  472 (480)
Q Consensus       433 ~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  472 (480)
                      ++++|+++|++++  ..|..|+||||+|+..|+.++|++|
T Consensus       171 ~v~~Ll~~gad~n--~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         171 ASKALLDNFANRE--ITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999  5699999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=4.1e-22  Score=154.29  Aligned_cols=94  Identities=32%  Similarity=0.445  Sum_probs=90.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                      -.|||++|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|+||||+|+..|
T Consensus         2 c~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din--~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           2 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN--APDKHHITPLLSAVYEG   79 (118)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT--CCSSSCSCHHHHHHTTT
T ss_pred             CChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceee--ecccccccchhhhhhcC
Confidence            3689999999999999999999999999999999999999999999999999999999999  56999999999999999


Q ss_pred             CHHHHHHHHHcCCCCC
Q psy875          465 HTDIVQALVSAGAEVS  480 (480)
Q Consensus       465 ~~~~~~~Ll~~ga~~~  480 (480)
                      +.+++++|+++|+|++
T Consensus        80 ~~~~v~~Ll~~Gad~~   95 (118)
T d1myoa_          80 HVSCVKLLLSKGADKT   95 (118)
T ss_dssp             CCHHHHHHHTTCCCSS
T ss_pred             chhhhhhhhcccccce
Confidence            9999999999999985

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-21  Score=158.07  Aligned_cols=145  Identities=26%  Similarity=0.274  Sum_probs=128.0

Q ss_pred             cCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHH
Q psy875          313 KRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVA  392 (480)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a  392 (480)
                      .|+.-....+...+.++|..+..+.||+++|+ .|+.+++++|+++|++++...                ..|.+|++.+
T Consensus        11 ~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~----------------~~~~~~l~~~   73 (156)
T d1ihba_          11 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKD----------------RTGFAVIHDA   73 (156)
T ss_dssp             HTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCC----------------TTSCCHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccccccc----------------ccCccccccc
Confidence            34444444455567788988999999999876 789999999999999987653                3489999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q psy875          393 AARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGA-DPNDKVQDSAGWLPLHEAANHGHTDIVQA  471 (480)
Q Consensus       393 ~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  471 (480)
                      +..+....++.++..+.+++..+..|.+|||+|+..+..+++++|+++|+ +++  .+|..|.||||+|+..++.+++++
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~d~~g~TpL~~A~~~~~~~iv~~  151 (156)
T d1ihba_          74 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLARLYGRNEVVSL  151 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999987 666  569999999999999999999999


Q ss_pred             HHHcC
Q psy875          472 LVSAG  476 (480)
Q Consensus       472 Ll~~g  476 (480)
                      |+++|
T Consensus       152 Ll~~G  156 (156)
T d1ihba_         152 MQANG  156 (156)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            99998

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.4e-20  Score=168.17  Aligned_cols=201  Identities=16%  Similarity=0.143  Sum_probs=148.1

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      +..|..+...|++++|+.+|+++++.    .|....+|..+|.+|... |++++|+.++.+|+++.+..      ..++.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~   91 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAEN-EQELLAISALRRCLELKPDN------QTALM   91 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc-CChHHHHHHHHhhhcccccc------ccccc
Confidence            45666666666666666666666666    455555666666663333 66666666666666653321      34556


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhc-------------------------------------------------ccccccH
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLS-------------------------------------------------SDLCKDL  151 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~-------------------------------------------------~~~~~~~  151 (480)
                      .+|.+|...|++++|++++++++.                                                 ..+....
T Consensus        92 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~  171 (323)
T d1fcha_          92 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID  171 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred             cccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            666666666666666666665443                                                 2222223


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR  231 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  231 (480)
                      +.++..+|.++...|++++|+.+|++++..    .|..+.++..+|.++..+|+ +++|+.+|++++++      .+...
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~------~p~~~  240 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALEL------QPGYI  240 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCH
T ss_pred             cccchhhHHHHHHHHHHhhhhccccccccc----ccccccchhhhhhccccccc-chhHHHHHHHHHHH------hhccH
Confidence            567888999999999999999999999988    44456789999999999999 99999999999987      33446


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy875          232 TVMRSMKKLYKKHDKFTELEQIKTELKSLEEK  263 (480)
Q Consensus       232 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~  263 (480)
                      .++..+|.+|..+|++++|+.++++++++...
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            78899999999999999999999999997654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.3e-21  Score=152.79  Aligned_cols=92  Identities=35%  Similarity=0.533  Sum_probs=89.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCH
Q psy875          387 TALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHT  466 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~  466 (480)
                      ++||.|+..|+.++|+.|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++  .+|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~--~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN--AADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccc--cccccCcccccccchhhHH
Confidence            67999999999999999999999999999999999999999999999999999999999  6699999999999999999


Q ss_pred             HHHHHHHHcCCCCC
Q psy875          467 DIVQALVSAGAEVS  480 (480)
Q Consensus       467 ~~~~~Ll~~ga~~~  480 (480)
                      +++++|+++|++++
T Consensus        81 ~~v~~Ll~~ga~v~   94 (130)
T d1ycsb1          81 QVCKFLVESGAAVF   94 (130)
T ss_dssp             HHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=169.74  Aligned_cols=156  Identities=21%  Similarity=0.238  Sum_probs=124.2

Q ss_pred             cCCccchhhhccCC---------------CcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccc-----
Q psy875          313 KRAPRSHFLIKRND---------------KDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATL-----  372 (480)
Q Consensus       313 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~-----  372 (480)
                      .|+||||+|+..+.               .+++..+..+.|||+.|+..|+.+++++|+++|++++.........     
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            48999999987654               4567778889999999999999999999999999876542211100     


Q ss_pred             --------------------------------------------------cCCCccccCCCCCchHHHHHHHcCCHHHHH
Q psy875          373 --------------------------------------------------ETPTTSLLEKPRGETALHVAAARGNLTLVQ  402 (480)
Q Consensus       373 --------------------------------------------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~  402 (480)
                                                                        ............+.+||+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                              011111122345788899999999999999


Q ss_pred             HHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q psy875          403 SLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQ  470 (480)
Q Consensus       403 ~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~  470 (480)
                      .+++.|.+++.+|..|.||||+|+..|+.+++++|+++|++++  .+|.+|.||||+|+..|+.++++
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n--~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--LKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHhCCCccccC
Confidence            9999999888888899999999999999999999999999988  56888999999999888888874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=2.2e-20  Score=169.88  Aligned_cols=156  Identities=25%  Similarity=0.289  Sum_probs=121.7

Q ss_pred             hHhhhccCCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCc
Q psy875          307 DKRTNRKRAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGE  386 (480)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  386 (480)
                      -......|+.-+...+...|.++|..+..+.|+++.|+..|+.++|++|+++|+++.....                .+.
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~----------------~~~  107 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN----------------EGW  107 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------TSC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccc----------------ccc
Confidence            3455666777666666667788998899999999999999999999999999988765432                266


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCC----------------------------------------------------
Q psy875          387 TALHVAAARGNLTLVQSLLKQGHPVKVQ----------------------------------------------------  414 (480)
Q Consensus       387 ~~l~~a~~~~~~~~~~~ll~~g~~~~~~----------------------------------------------------  414 (480)
                      +||+.++..++.++++.|+++|+..+..                                                    
T Consensus       108 ~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (291)
T d1s70b_         108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS  187 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcc
Confidence            6777777777777777776665544332                                                    


Q ss_pred             --------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          415 --------DSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       415 --------~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                              +..|.||||.|+..|+.++++.|++.|++++  .++..|+||||+|+..|+.+++++|+++|+|++
T Consensus       188 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din--~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~  259 (291)
T d1s70b_         188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLHAAAHWGKEEACRILVENLCDME  259 (291)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccccccccCCCCChhhHHHHcCChhhhcccccceeccc--ccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                    3346788888888888888888888888888  558888899999998889999999988888875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-20  Score=179.91  Aligned_cols=144  Identities=30%  Similarity=0.355  Sum_probs=127.5

Q ss_pred             ccCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCcccc
Q psy875          312 RKRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLL  380 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~  380 (480)
                      ..|.||+++++..+..           ..+..+..+.++++.++..++.+++++|+++|++++....             
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~-------------  295 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-------------  295 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS-------------
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccc-------------
Confidence            3466777776655443           4455667778999999999999999999999999887643             


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHH
Q psy875          381 EKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEA  460 (480)
Q Consensus       381 ~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A  460 (480)
                         .+.||||.++..++.++++.+++.|+++|.+|..|.||||+|+..|+.++|++|+++|++++  .+|.+|.||||+|
T Consensus       296 ---~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n--~~d~~G~t~L~~A  370 (408)
T d1n11a_         296 ---MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--EVSSDGTTPLAIA  370 (408)
T ss_dssp             ---SCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCSSSCCHHHHH
T ss_pred             ---cccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHH
Confidence               48999999999999999999999999999999999999999999999999999999999999  6699999999999


Q ss_pred             HHcCCHHHHHHHH
Q psy875          461 ANHGHTDIVQALV  473 (480)
Q Consensus       461 ~~~~~~~~~~~Ll  473 (480)
                      +..|+.+++++|.
T Consensus       371 ~~~~~~~iv~~L~  383 (408)
T d1n11a_         371 KRLGYISVTDVLK  383 (408)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH
Confidence            9999999998663

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=1.2e-20  Score=170.25  Aligned_cols=148  Identities=23%  Similarity=0.191  Sum_probs=114.7

Q ss_pred             CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHH--------HhcCCchhhhhhhhccccCCCccccCCCCC
Q psy875          314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLL--------SLLNADLLVHLNLSATLETPTTSLLEKPRG  385 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  385 (480)
                      |...+...+.+.+.+... ...+.|+||+|+..|+.++|++|        ++.|+|+|..+                .+|
T Consensus        12 ~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d----------------~~G   74 (277)
T d2fo1e1          12 GSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD----------------CDE   74 (277)
T ss_dssp             SSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC----------------TTS
T ss_pred             CCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccC----------------CCC
Confidence            333344444444433322 23588999999999999999876        56688888654                359


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHH---------------------------------
Q psy875          386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTD---------------------------------  432 (480)
Q Consensus       386 ~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~---------------------------------  432 (480)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+                                 
T Consensus        75 ~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
T d2fo1e1          75 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE  154 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred             CeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcc
Confidence            99999999999999999999999999999988888888877766543                                 


Q ss_pred             -----------------------------------------------HHHHH-HHcCCCCCCccCCCCCCcHHHHHHHcC
Q psy875          433 -----------------------------------------------IVQAL-VSAGADPNDKVQDSAGWLPLHEAANHG  464 (480)
Q Consensus       433 -----------------------------------------------~~~~L-l~~g~~~~~~~~~~~g~tpl~~A~~~~  464 (480)
                                                                     +++++ ...+.+++  .+|..|.||||+|+..|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g~tpL~~A~~~g  232 (277)
T d2fo1e1         155 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTPIMLAAQEG  232 (277)
T ss_dssp             STTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccc--ccCCCCCCHHHHHHHcC
Confidence                                                           33332 34455555  46889999999999999


Q ss_pred             CHHHHHHHHHcCCCCC
Q psy875          465 HTDIVQALVSAGAEVS  480 (480)
Q Consensus       465 ~~~~~~~Ll~~ga~~~  480 (480)
                      +.+++++|+++|+|+|
T Consensus       233 ~~~iv~~Ll~~gadin  248 (277)
T d2fo1e1         233 RIEVVMYLIQQGASVE  248 (277)
T ss_dssp             CHHHHHHHHHTTCCSS
T ss_pred             CHHHHHHHHHCcCCCC
Confidence            9999999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.8e-20  Score=164.09  Aligned_cols=162  Identities=22%  Similarity=0.215  Sum_probs=121.4

Q ss_pred             ccCCccchhhhccCCC-----------cCC---CCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhh--hc-----
Q psy875          312 RKRAPRSHFLIKRNDK-----------DSN---LNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNL--SA-----  370 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~--~~-----  370 (480)
                      ..|.||||+|+..+..           +++   ..+..+.++++.+...+..++++.++..+...+.....  ..     
T Consensus        32 ~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  111 (229)
T d1ixva_          32 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL  111 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3466777776665532           332   23445556777777777777777777666544332110  00     


Q ss_pred             ------------cccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q psy875          371 ------------TLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQG-HPVKVQDSAGWLPLHEAANHGHTDIVQAL  437 (480)
Q Consensus       371 ------------~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  437 (480)
                                  ....+......+..|.||||+|+..|+.++++.|++.| .+++.+|..|+||||+|+..|+.+++++|
T Consensus       112 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~L  191 (229)
T d1ixva_         112 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL  191 (229)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHH
Confidence                        01233334445677999999999999999999999987 67899999999999999999999999999


Q ss_pred             HH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy875          438 VS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAE  478 (480)
Q Consensus       438 l~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  478 (480)
                      ++ .|++++  ..|..|+||||+|+   +.+++++|+++|+|
T Consensus       192 l~~~gad~~--~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         192 VEKYGAEYD--LVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHCCCSC--CCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             HHhcCCCCC--CcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            97 599999  56999999999998   46899999999998

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.6e-20  Score=149.35  Aligned_cols=121  Identities=34%  Similarity=0.425  Sum_probs=113.8

Q ss_pred             hHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q psy875          338 SITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA  417 (480)
Q Consensus       338 ~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~  417 (480)
                      ++||.|+..|+.++|++|+++|+|++..+                +.|.||||+|+ .|+.+++++|+++|++++.++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d----------------~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~   65 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQN----------------GFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT   65 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCC----------------TTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccC----------------Ccccccccccc-ccccccccccccccccccccccc
Confidence            68899999999999999999999998754                45999999886 78999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy875          418 GWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGA  477 (480)
Q Consensus       418 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  477 (480)
                      |.+|++.++..+..++++.|+..+.+++  ..+..|.+|+|+|+..++.+++++|+++|+
T Consensus        66 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          66 GFAVIHDAARAGFLDTLQTLLEFQADVN--IEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             Cccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999  569999999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=163.87  Aligned_cols=129  Identities=27%  Similarity=0.240  Sum_probs=111.7

Q ss_pred             CCCchHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcC----CHHHHHHHHhcC
Q psy875          334 YNIESITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARG----NLTLVQSLLKQG  408 (480)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~----~~~~~~~ll~~g  408 (480)
                      ..+.++++.|++.|+.+++++|+++ |++++..+.                .|.++++.+...+    ...++++|+++|
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~Li~~g  209 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDN----------------MGRNALIHALLSSDDSDVEAITHLLLDHG  209 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT----------------TSCCHHHHHHHCSCTTTHHHHHHHHHHTT
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccC----------------CCCcccccccccccchHHHHHHHHHHHCC
Confidence            3456788889999999999999965 788876543                3777766655543    357999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          409 HPVKVQDSAGWLPLHEAANHGHTDIVQALVS-AGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       409 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++++.++..|.||||+|+..|+.+++++|++ .|++++  ..|.+|.||||+|+..|+.+++++|+++|||+|
T Consensus       210 a~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din--~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--DTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc--CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999998 489999  569999999999999999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=147.88  Aligned_cols=123  Identities=34%  Similarity=0.421  Sum_probs=111.0

Q ss_pred             hHHHHHHhhCcHHHHHHHHhc-CCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy875          338 SITISRNRLGAQEVRKLLSLL-NADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDS  416 (480)
Q Consensus       338 ~~~~~a~~~~~~~~v~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~  416 (480)
                      ..|+.|+..|+.++|+.|++. |++++..+                +.|.||||+|+ .++.+++++|++.+.+++..+.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d----------------~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~   66 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALN----------------RFGKTALQVMM-FGSTAIALELLKQGASPNVQDT   66 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCC----------------TTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccC----------------CCCCccccccc-cccccccccccccccccccccc
Confidence            358899999999999999876 67877653                45999999986 5889999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          417 AGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       417 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      .|.+|++.++..++.+++++++++|++++  .+|..|.||||+|+..|+.+++++|+ .|++++
T Consensus        67 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~n--~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~  127 (156)
T d1bd8a_          67 SGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH  127 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT
T ss_pred             ccccccccccccccccccccccccccccc--cccCCCCeeecccccccccccccccc-cccccc
Confidence            99999999999999999999999999999  56999999999999999999999887 688764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.8e-17  Score=154.24  Aligned_cols=260  Identities=12%  Similarity=0.064  Sum_probs=204.4

Q ss_pred             hhhHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHH
Q psy875            2 RFKIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLG   79 (480)
Q Consensus         2 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~   79 (480)
                      |+.+++..|.. ..++......+...... .....+.++..+|.+|...|++++|+.+|++++++.  .++......++.
T Consensus        18 rA~~~~~~g~~-~~A~~~~~~aL~~~~~~-~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          18 RAQVAINDGNP-DEAERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHHHHTCCTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCH-HHHHHHHHHHHhhCcCC-CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            56667777776 55555544444444333 333456789999999999999999999999999986  334455677888


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC--chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc---------
Q psy875           80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKD--DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC---------  148 (480)
Q Consensus        80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~--~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~---------  148 (480)
                      .++.+|... |++..|...+.+++.+......  ....+.++..+|.++...|++++|..++.+++...+.         
T Consensus        96 ~~~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          96 QQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            999995555 9999999999999988765443  3556677889999999999999999998866543222         


Q ss_pred             -----------------------------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          149 -----------------------------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       149 -----------------------------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                                                         +....++..+|.++...|++++|..++++++.....+++.....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence                                               112334555677777777777787777777766555556666778


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKLD  265 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~~  265 (480)
                      .++|.++...|+ +++|..++++++...+..+..+....++..+|.+|..+|++++|..+++++.++....+
T Consensus       255 ~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~  325 (366)
T d1hz4a_         255 RNIARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG  325 (366)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcC
Confidence            899999999999 99999999999999999999999999999999999999999999999999999876654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.79  E-value=1.2e-19  Score=164.77  Aligned_cols=158  Identities=23%  Similarity=0.230  Sum_probs=128.0

Q ss_pred             hccCCccchhhhccCCC-----------cCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc--------
Q psy875          311 NRKRAPRSHFLIKRNDK-----------DSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT--------  371 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~--------  371 (480)
                      +..|.||||+++..+..           +.+.....+.++++.++..++.++++.|+++|+..+..+.....        
T Consensus        70 d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~  149 (291)
T d1s70b_          70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (291)
T ss_dssp             CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             CCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCcccccccccc
Confidence            45688999999887654           34566677889999999999999999999998866543211100        


Q ss_pred             ------------------------------------ccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy875          372 ------------------------------------LETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQD  415 (480)
Q Consensus       372 ------------------------------------~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~  415 (480)
                                                          ..........+..|.||||.|+..|+.++++.|++.|+++|.++
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~  229 (291)
T d1s70b_         150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD  229 (291)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred             ccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccc
Confidence                                                01122233445679999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy875          416 SAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS  474 (480)
Q Consensus       416 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  474 (480)
                      ..|+||||+|+..|+.++|++|+++|++++  .+|..|.||||+|+.    +++++|.+
T Consensus       230 ~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~--~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         230 YDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHH----HHHHHHHH
Confidence            999999999999999999999999999999  569999999999975    56666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=5.6e-18  Score=153.43  Aligned_cols=223  Identities=15%  Similarity=0.057  Sum_probs=178.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhh
Q psy875           30 SDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLAR  107 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~  107 (480)
                      ...++.-+..|...|.+|...++|++|+++|.+|+++.  .++.+..+.+|.++|.+| ...|++++|+.+|++++.+..
T Consensus        30 ~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y-~~~~~~~~A~~~~~~a~~~~~  108 (290)
T d1qqea_          30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF-KSGGNSVNAVDSLENAIQIFT  108 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHhhHHhh
Confidence            44567778999999999999999999999999999987  555667788999999995 555999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          108 QNKDDKLIRTVMRSIKKLYKK-HDNLDSACSELHTVLSSDLC----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~y~~-~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      ..+.......++.++|.+|.. .|++++|+.+|++++...+.    +....++.++|.+|..+|+|++|+++|++++...
T Consensus       109 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence            998888889999999999865 69999999999999865433    3346789999999999999999999999999886


Q ss_pred             hcC---cHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--cCChHHHHHHHH
Q psy875          183 ARN---FPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK--HDKFTELEQIKT  255 (480)
Q Consensus       183 ~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~  255 (480)
                      ...   .......+...|.++...++ +..|...++++.++.....+.. ....+..+...+..  .+.+.+|+..|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~l~~~d-~~~A~~~~~~~~~~~~~~~~sr-e~~~l~~l~~a~~~~d~e~~~eai~~y~  264 (290)
T d1qqea_         189 MGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (290)
T ss_dssp             SSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCccchH-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            552   34455677889999999999 9999999999887654433322 23444556666655  345777777764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.7e-19  Score=152.28  Aligned_cols=128  Identities=26%  Similarity=0.258  Sum_probs=112.6

Q ss_pred             CCchHHHHHHhhCcHHHHHHHHh----cCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy875          335 NIESITISRNRLGAQEVRKLLSL----LNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHP  410 (480)
Q Consensus       335 ~~~~~~~~a~~~~~~~~v~~L~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~  410 (480)
                      +|.||||.|+..|+.++|+.|++    .|++++..+                ..|.||||+|+..|+.++++.|+++|++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d----------------~~g~TpL~~A~~~~~~~iv~~Ll~~ga~   65 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN----------------NLRQTPLHLAVITTLPSVVRLLVTAGAS   65 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccC----------------CCCCccceehhccccccccccccccccc
Confidence            57899999999999999998875    788877653                4599999999999999999999999988


Q ss_pred             CCCCCCC-----------------------------------------------------------------------CC
Q psy875          411 VKVQDSA-----------------------------------------------------------------------GW  419 (480)
Q Consensus       411 ~~~~~~~-----------------------------------------------------------------------g~  419 (480)
                      ++..+..                                                                       |.
T Consensus        66 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (228)
T d1k1aa_          66 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR  145 (228)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCC
T ss_pred             ccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchh
Confidence            7755433                                                                       66


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          420 LPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       420 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      +||+.|+..+...+++.++++|.+++  .+|..|.||||+|+..|+.+++++|+++|+|+|
T Consensus       146 ~~l~~a~~~~~~~~~~~~~~~~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n  204 (228)
T d1k1aa_         146 SPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  204 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             hHHHHHHHhhhhhhhhhhhhhccccc--cccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            78888888888899999999999988  568999999999999999999999999999985

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.79  E-value=1e-21  Score=182.59  Aligned_cols=131  Identities=16%  Similarity=0.184  Sum_probs=107.9

Q ss_pred             cCCCchHHHHHHhhCcHHHHHH---HHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q psy875          333 LYNIESITISRNRLGAQEVRKL---LSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGH  409 (480)
Q Consensus       333 ~~~~~~~~~~a~~~~~~~~v~~---L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~  409 (480)
                      +..+.++++.|+..|+.+++++   |++.|++++..+.                +|.||||+||..|+.++|++|++.|+
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~----------------~g~taL~~Aa~~G~~~~v~~Ll~~g~  150 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----------------ENYQAFRLAAENGHLHVLNRLCELAP  150 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH----------------HHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC----------------CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            3456788999999999887765   7999999987654                39999999999999999999999999


Q ss_pred             CCCCCC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          410 PVKVQD--SAGWLPLHEAANHGHTDIVQALVSAGADPND-KVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       410 ~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      +++..+  ..|+||||+|+..|+.++|++|++.|++... ...+.+|.||++.|+.+|+.+++++|++.|+++
T Consensus       151 ~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            998765  4689999999999999999999999876531 122455778888999999999999999998754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-18  Score=163.55  Aligned_cols=204  Identities=19%  Similarity=0.284  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      +..+.++..+|..+...|++++|+.+++++++.    .|....++..+|.+| ...|++++|+..++++.......    
T Consensus       166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~----  236 (388)
T d1w3ba_         166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVL-KEARIFDRAVAAYLRALSLSPNH----  236 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH-HTTTCTTHHHHHHHHHHHHCTTC----
T ss_pred             cchhHHHHhhcccccccCcHHHHHHHHHHHHHh----CcccHHHHHHHhhhh-hccccHHHHHHHHHHhHHHhhhH----
Confidence            345678888999999999999999999999988    666677888899994 45599999999999988774422    


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                        ...+..+|.+|...|++++|+.+|++++...+  ....++.++|.+|...|++++|++++++++..    .+.....+
T Consensus       237 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~  308 (388)
T d1w3ba_         237 --AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRL----CPTHADSL  308 (388)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc----CCccchhh
Confidence              45678899999999999999999999987764  44577889999999999999999999998887    34456778


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          194 GEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      ..+|.++...|+ +++|+.+|++++++      .|....++..+|.+|..+|++++|..+++++.++.
T Consensus       309 ~~l~~~~~~~~~-~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         309 NNLANIKREQGN-IEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHHTTTC-HHHHHHHHHHHTTS------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            889999999999 99999999998865      33346778889999999999999999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.2e-18  Score=155.76  Aligned_cols=213  Identities=15%  Similarity=0.124  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-  112 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-  112 (480)
                      +..+.+++.+|.++...|++++|+.+|.+++++    .|.....+..+|.+|.. .|++++|+..+++++...+..... 
T Consensus        50 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~  124 (323)
T d1fcha_          50 PKHMEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTN-ESLQRQACEILRDWLRYTPAYAHLV  124 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc----ccccccccccccccccc-cccccccccchhhHHHhccchHHHH
Confidence            345778999999999999999999999999999    56667788999999555 499999999999988654321100 


Q ss_pred             --------------------------------------------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc
Q psy875          113 --------------------------------------------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC  148 (480)
Q Consensus       113 --------------------------------------------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~  148 (480)
                                                                  .....++..+|.++...|++++|+.+|++++...+ 
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-  203 (323)
T d1fcha_         125 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-  203 (323)
T ss_dssp             C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             HhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-
Confidence                                                        00124567899999999999999999999987664 


Q ss_pred             ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          149 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       149 ~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                       ....++..+|.+|..+|++++|+++|++++++    .|..+.++.++|.+|...|+ +++|+.+|++|+++.+......
T Consensus       204 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         204 -NDYLLWNKLGATLANGNQSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC----
T ss_pred             -ccccchhhhhhcccccccchhHHHHHHHHHHH----hhccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCcChhhh
Confidence             45688999999999999999999999999998    34456789999999999999 9999999999999866543221


Q ss_pred             -----HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          229 -----LIRTVMRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       229 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                           ....++..++.++..+|+.+.+.....+.+
T Consensus       278 ~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l  312 (323)
T d1fcha_         278 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  312 (323)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCH
Confidence                 122455667888888888776655544443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=6e-19  Score=151.83  Aligned_cols=115  Identities=30%  Similarity=0.323  Sum_probs=103.3

Q ss_pred             HHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-----------
Q psy875          349 QEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSA-----------  417 (480)
Q Consensus       349 ~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~-----------  417 (480)
                      .++|++|+++|+|++...+.               +|.||||+||..|+.+++++|+..|++++.++..           
T Consensus         2 ~~~v~~Ll~~g~din~~~d~---------------~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~   66 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDK---------------TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA   66 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---------------HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCcCcCcCC---------------CCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccc
Confidence            48999999999999875321               3999999999999999999999988888765443           


Q ss_pred             --------------------------------------------------------CChHHHHHHHcCCHHHHHHHHHcC
Q psy875          418 --------------------------------------------------------GWLPLHEAANHGHTDIVQALVSAG  441 (480)
Q Consensus       418 --------------------------------------------------------g~t~l~~a~~~~~~~~~~~Ll~~g  441 (480)
                                                                              |+||||+++..+..++++.+++.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~  146 (209)
T d1ot8a_          67 DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH  146 (209)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccc
Confidence                                                                    788999999999999999999999


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          442 ADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       442 ~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      .+++  ..|..|.||||+|+..|+.+++++|+++|+|+|
T Consensus       147 ~~~~--~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         147 ANRD--AQDDKDETPLFLAAREGSYEASKALLDNFANRE  183 (209)
T ss_dssp             CCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccc--ccccccccccchhccccHHHHHHHHHHCCCCCC
Confidence            9999  569999999999999999999999999999985

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.2e-18  Score=160.24  Aligned_cols=191  Identities=18%  Similarity=0.269  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           32 LCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        32 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ..+....++..+|.++...|++++|+..++++...    .+.....+..+|.+|... |++++|+.+|++++++.+..  
T Consensus       198 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~--  270 (388)
T d1w3ba_         198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQ-GLIDLAIDTYRRAIELQPHF--  270 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSC--
T ss_pred             hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH----hhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC--
Confidence            34455678999999999999999999999999988    566677788999995554 99999999999999875432  


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                          ..++.++|.++...|++++|+.++++++...+  ....++..+|.+|...|++++|+++|++++++    .|..+.
T Consensus       271 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~  340 (388)
T d1w3ba_         271 ----PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAA  340 (388)
T ss_dssp             ----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS----CTTCHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC--ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH
Confidence                46788999999999999999999999886554  44577889999999999999999999999988    344567


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q psy875          192 TLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDK  246 (480)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  246 (480)
                      ++.++|.++..+|+ +++|+.+|++++++      .|....++..||.+|.++||
T Consensus       341 ~~~~la~~~~~~g~-~~~A~~~~~~al~l------~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         341 AHSNLASVLQQQGK-LQEALMHYKEAIRI------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTTC-CHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Confidence            89999999999999 99999999999876      44556788999999999886

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.4e-20  Score=158.39  Aligned_cols=132  Identities=30%  Similarity=0.351  Sum_probs=95.9

Q ss_pred             CCccchhhhccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHH
Q psy875          314 RAPRSHFLIKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAA  393 (480)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~  393 (480)
                      |+||||+++..+..++-                  .++++.+...|+++|..+.                .|.||||+|+
T Consensus         2 G~t~Lh~A~~~g~~~~~------------------~~li~~~~~~~~~in~~d~----------------~g~TpLh~A~   47 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALT------------------MEVIRQVKGDLAFLNFQNN----------------LQQTPLHLAV   47 (221)
T ss_dssp             CCCTTHHHHHTTCSSSS------------------SCCCC-----CCCCCCCCT----------------TCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHH------------------HHHHHHHHhCCCCcccCCC----------------CCCccccccc
Confidence            77888888777665332                  2356777788888876543                4888888888


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHH---------------------------------------H
Q psy875          394 ARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDI---------------------------------------V  434 (480)
Q Consensus       394 ~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~---------------------------------------~  434 (480)
                      ..|+.+++++|++.|++++.+|..|.||||+++..++.++                                       +
T Consensus        48 ~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  127 (221)
T d1iknd_          48 ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV  127 (221)
T ss_dssp             HTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhhe
Confidence            8888888888888888888877777777766666655544                                       4


Q ss_pred             HHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          435 QALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       435 ~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++|+..|+.++.. .+.+|.||||+|+..|+.+++++|+++|+|++
T Consensus       128 ~~l~~~~~~~~~~-~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~  172 (221)
T d1iknd_         128 ELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVN  172 (221)
T ss_dssp             HHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred             eeecccCcccccc-cccCCCCccccccccccHHHHHHHHhcCCccc
Confidence            5555556666532 35679999999999999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.5e-18  Score=165.54  Aligned_cols=157  Identities=28%  Similarity=0.350  Sum_probs=125.0

Q ss_pred             hccCCCcCCCCcCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhc-------------------------------
Q psy875          322 IKRNDKDSNLNLYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSA-------------------------------  370 (480)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~-------------------------------  370 (480)
                      +...+.+++..+.++.++++.|+..|+.+++++|+.+|++++.......                               
T Consensus       151 ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (408)
T d1n11a_         151 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  230 (408)
T ss_dssp             HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCC
Confidence            3344556666666677777777777777777777777776653211100                               


Q ss_pred             -------------------cccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCH
Q psy875          371 -------------------TLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHT  431 (480)
Q Consensus       371 -------------------~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~  431 (480)
                                         ...........+..|.|||+.++..++.+++++|+++|++++..+..+.||||.++..++.
T Consensus       231 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcc
Confidence                               0012223334466788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          432 DIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       432 ~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++++++++.|++++  .+|..|.||||+|++.|+.+++++|+++|||+|
T Consensus       311 ~~~~~ll~~g~~in--~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         311 KLVKFLLQHQADVN--AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             HHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             eeeeeecccccccc--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999  569999999999999999999999999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=7.9e-19  Score=159.86  Aligned_cols=134  Identities=25%  Similarity=0.167  Sum_probs=102.2

Q ss_pred             CCcCCCC-cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCH------
Q psy875          326 DKDSNLN-LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNL------  398 (480)
Q Consensus       326 ~~~~~~~-~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~------  398 (480)
                      +.++|.. +..+.|+||+|+..|+.++|++|+++|+|++..+.                .|.||||.||..++.      
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~----------------~G~TpL~~A~~~~~~~~~~~~  159 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN----------------MGESCLVKAVKSVNNYDSGTF  159 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----------------TCCCHHHHHHHSSHHHHTTCH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc----------------ccccHHHHhhhcccchhhhhH
Confidence            3355543 56788999999999999999999999999987643                499999999987642      


Q ss_pred             -HHHHHHHhcCCCCCCCCCCCChHHHHHHHcCC----HH--------HHHHHHHcCCC----------------------
Q psy875          399 -TLVQSLLKQGHPVKVQDSAGWLPLHEAANHGH----TD--------IVQALVSAGAD----------------------  443 (480)
Q Consensus       399 -~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~----~~--------~~~~Ll~~g~~----------------------  443 (480)
                       ++++.+.   ..++.+|..|+||||.++..+.    ..        ++.+++..+..                      
T Consensus       160 ~~ll~~l~---~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
T d1sw6a_         160 EALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD  236 (301)
T ss_dssp             HHHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred             HHHHHHHh---hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchH
Confidence             3444433   3456778889999998876543    22        23344443322                      


Q ss_pred             ---------------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          444 ---------------PNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       444 ---------------~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                                     +|  .+|.+|+||||+|++.|+.+++++|+++|||++
T Consensus       237 ~~~~~~~~~~~~~~~in--~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~  286 (301)
T d1sw6a_         237 SILENLDLKWIIANMLN--AQDSNGDTCLNIAARLGNISIVDALLDYGADPF  286 (301)
T ss_dssp             HHHHHCSHHHHHHHTTT--CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHhhHHHHhcCcc--CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                           46  568999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.2e-19  Score=137.34  Aligned_cols=93  Identities=33%  Similarity=0.493  Sum_probs=86.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCC-cHHHHHHHc
Q psy875          385 GETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGW-LPLHEAANH  463 (480)
Q Consensus       385 g~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~-tpl~~A~~~  463 (480)
                      +.++||+|+..|+.++|++|+++|+++|.+|..|.||||+|+ .|+.+++++|+++|++++  .++..|. ||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~--~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN--CADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC--CCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccc--ccccccccccccccccc
Confidence            678999999999999999999999999999999999999775 799999999999999999  4577665 699999999


Q ss_pred             CCHHHHHHHHHcCCCCC
Q psy875          464 GHTDIVQALVSAGAEVS  480 (480)
Q Consensus       464 ~~~~~~~~Ll~~ga~~~  480 (480)
                      |+.+++++|+++|++++
T Consensus        80 g~~~~v~~Ll~~ga~~~   96 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLD   96 (125)
T ss_dssp             TCHHHHHHHHHHTCCSS
T ss_pred             ccccccccccccccccc
Confidence            99999999999999975

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-17  Score=150.14  Aligned_cols=205  Identities=9%  Similarity=0.042  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .++.+.++.++|.++...+.+++|++.+.+|+++    .|....+|++.|.++....+++++|+.++++++++.++.   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---  111 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---  111 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---
Confidence            4677889999999999999999999999999999    888899999999995554356999999999999985543   


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                         ..++.++|.++..+|++++|+.++.+++...+.  ...++.++|.++...|++++|+.++++++++    .|....+
T Consensus       112 ---~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~--n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~----~p~n~~a  182 (315)
T d2h6fa1         112 ---YQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----DVRNNSV  182 (315)
T ss_dssp             ---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHH
T ss_pred             ---hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc--chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----CCccHHH
Confidence               678999999999999999999999999977654  4588999999999999999999999999999    5555778


Q ss_pred             HHHHHHHHHHhCCc-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKP-----FELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       193 ~~~l~~~~~~~~~~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      |.++|.++...+..     +++|+..+.+++.+      .|....++..++.++...| ..++...++++..+
T Consensus       183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~------~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL------VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL  248 (315)
T ss_dssp             HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccchhhhhHHhHHHHHHHHHh------CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence            99999998887761     36888888888877      3344566777787766554 57777777776654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.1e-17  Score=134.97  Aligned_cols=96  Identities=20%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             cCCCchHHHHHHhh---CcHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q psy875          333 LYNIESITISRNRL---GAQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQGH  409 (480)
Q Consensus       333 ~~~~~~~~~~a~~~---~~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~g~  409 (480)
                      ...+.+++|.|+..   |+.++|++|+++|++++..+                ..|.||||+|+..|+.+++++|+++|+
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d----------------~~g~TpLh~A~~~~~~~~v~~Ll~~ga  105 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT----------------GKGSTALHYCCLTDNAECLKLLLRGKA  105 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCC----------------TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhh----------------hhhccccccccccccccccccccccCc
Confidence            45567888888864   78899999999999998764                359999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          410 PVKVQDSAGWLPLHEAANHGHTDIVQALVSAGADP  444 (480)
Q Consensus       410 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  444 (480)
                      +++.+|..|+||||+|+..|+.+++++|++.+...
T Consensus       106 d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999976544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.9e-16  Score=141.92  Aligned_cols=213  Identities=10%  Similarity=0.051  Sum_probs=162.9

Q ss_pred             hHHHhhccchhhhhhh-------HHHHhhhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccCchH
Q psy875            4 KIALSRGIGLSDSLDS-------ACTELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH--ARNFPEA   74 (480)
Q Consensus         4 ~~~~~~g~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~   74 (480)
                      ++|...|.+ +...+.       ....+.+..........+.+|.++|.+|...|++++|+++|++++++.  .+.....
T Consensus        38 ~~y~~aa~~-y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          38 DLCVQAATI-YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHH-HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHH-HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            345555555 444443       333344455555667789999999999999999999999999999997  4445556


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----c
Q psy875           75 VKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----K  149 (480)
Q Consensus        75 ~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----~  149 (480)
                      ..++..+|.+|....|++++|+.+|++|+++....+.+.....++.++|.+|..+|+|++|+.+|++++...+.     .
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  196 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence            77889999997777799999999999999999988888888999999999999999999999999998876544     2


Q ss_pred             cHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC-cHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHH
Q psy875          150 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN-FPEAVKTLGEIGDLYEL--QEKPFELVVSTHEKAL  218 (480)
Q Consensus       150 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~l~~~~~~--~~~~~~~A~~~~~~al  218 (480)
                      .....+.++|.++...+++..|...+++++++.+.. ..........+..++..  .++ +++|+..|.++.
T Consensus       197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~-~~eai~~y~~~~  267 (290)
T d1qqea_         197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEFDNFM  267 (290)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT-HHHHHHHHTTSS
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHh
Confidence            335667889999999999999999999998875431 11223445566666655  345 778887776544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.3e-16  Score=140.13  Aligned_cols=205  Identities=11%  Similarity=0.005  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc
Q psy875           33 CKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD  112 (480)
Q Consensus        33 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~  112 (480)
                      .+..+.+++.+|.+|...|++++|+.+|++++++    .|....+|+++|.+| ...|++++|+.+|++++.+.+..   
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l----~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---  104 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYL-TQAGNFDAAYEAFDSVLELDPTY---  104 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCCHHHHhhhchHH-HHHHHHHHhhhhhhHHHHHHhhh---
Confidence            4567899999999999999999999999999999    677788899999995 55599999999999999985533   


Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHH
Q psy875          113 KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKT  192 (480)
Q Consensus       113 ~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  192 (480)
                         ..++.++|.+|..+|++++|+.+|++++...+...  .....++..+...+..+.+.......... ....+.....
T Consensus       105 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  178 (259)
T d1xnfa_         105 ---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWNIV  178 (259)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHHHH
T ss_pred             ---hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH--HHHHHHHHHHHHhhhHHHHHHHHHHhhcc-chhhhhhhHH
Confidence               45789999999999999999999999998776544  34455666666666555554444443333 2222222111


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ...++.. ...+. ++.+...+..+...      .+....++..+|.+|..+|++++|..++++++.
T Consensus       179 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         179 EFYLGNI-SEQTL-MERLKADATDNTSL------AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHTTSS-CHHHH-HHHHHHHCCSHHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHH-HHHHH-HHHHHHHHHHhhhc------CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1111111 11122 33333333333333      345567788999999999999999999998864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.68  E-value=9.1e-19  Score=162.41  Aligned_cols=127  Identities=20%  Similarity=0.260  Sum_probs=98.3

Q ss_pred             cHHHHHHHHhcCCchhhhhhhhccccCCCccccCCCCCchHHHHHHHcCCHHHHHH---HHhcCCCCCCCCCCCChHHHH
Q psy875          348 AQEVRKLLSLLNADLLVHLNLSATLETPTTSLLEKPRGETALHVAAARGNLTLVQS---LLKQGHPVKVQDSAGWLPLHE  424 (480)
Q Consensus       348 ~~~~v~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~---ll~~g~~~~~~~~~g~t~l~~  424 (480)
                      ..++++++...+++++.....     .......++..|.||||+|+..|+.+++++   |+..|+++|.+|..|+||||+
T Consensus        58 ~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~  132 (346)
T d2ajaa1          58 MEQVRQLLCLYYAHYNRNAKQ-----LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL  132 (346)
T ss_dssp             HHHHHHHHHHHHHHTTTTCTT-----HHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH
T ss_pred             HHHHHHHHHHcchhhccchhh-----hhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHH
Confidence            456777887777666543211     111222345569999999999999877665   788999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy875          425 AANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEV  479 (480)
Q Consensus       425 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  479 (480)
                      ||..|+.++|++|+++|++++....+..|.||||+|+..||.+++++|++.|+++
T Consensus       133 Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             HHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc
Confidence            9999999999999999999984322346999999999999999999999999753

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.5e-16  Score=129.23  Aligned_cols=92  Identities=38%  Similarity=0.522  Sum_probs=71.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHcC---------------------------------CHH
Q psy875          386 ETALHVAAARGNLTLVQSLLKQGHPVKVQDSAGWLPLHEAANHG---------------------------------HTD  432 (480)
Q Consensus       386 ~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~---------------------------------~~~  432 (480)
                      .||||.|+..|+.++|+.|+++|++++ .|..|+||||+|+..+                                 +.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            366666666666666666666666655 4566666666666655                                 446


Q ss_pred             HHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy875          433 IVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVSAGAEVS  480 (480)
Q Consensus       433 ~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  480 (480)
                      ++++++.+|++++  .++..|.||||+|+..|+.+++++|+++|++++
T Consensus        82 ~~~~l~~~~~~~~--~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~  127 (153)
T d1awcb_          82 IVEVLLKHGADVN--AKDMLKMTALHWATEHNHQEVVELLIKYGADVH  127 (153)
T ss_dssp             HHHHHHTTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             eeecccccCCccc--cccccCchHHHhhhhcchhheeeeccccccCCc
Confidence            6777788888888  569999999999999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.1e-16  Score=139.45  Aligned_cols=167  Identities=23%  Similarity=0.232  Sum_probs=123.6

Q ss_pred             ccCCccchhhhccCCCcCCCC-cCCCchHHHHHHhhCcHHHHHHHHhcCCchhhhhhhhcc-------------------
Q psy875          312 RKRAPRSHFLIKRNDKDSNLN-LYNIESITISRNRLGAQEVRKLLSLLNADLLVHLNLSAT-------------------  371 (480)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~v~~L~~~g~~~~~~~~~~~~-------------------  371 (480)
                      +.|+.-+...+...+.++|.. ...+.||+++|+..|+.+++++|++.|.++.........                   
T Consensus        14 ~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (285)
T d1wdya_          14 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhh
Confidence            344444443344456777644 346788999999999999999999988865432111000                   


Q ss_pred             -c----------------------------------------cCCCccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CC
Q psy875          372 -L----------------------------------------ETPTTSLLEKPRGETALHVAAARGNLTLVQSLLKQ-GH  409 (480)
Q Consensus       372 -~----------------------------------------~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-g~  409 (480)
                       .                                        ............|.||||+|+..|+.+++++|++. |+
T Consensus        94 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  173 (285)
T d1wdya_          94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  173 (285)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred             hcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCC
Confidence             0                                        00000011134588999999999999999999976 89


Q ss_pred             CCCCCCCCCChHHHHHHHcC----CHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Q psy875          410 PVKVQDSAGWLPLHEAANHG----HTDIVQALVSAGADPNDKVQDSAGWLPLHEAANHGHTDIVQALVS-AGAEVS  480 (480)
Q Consensus       410 ~~~~~~~~g~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~  480 (480)
                      +++..+..|.++++.+...+    ...++++|+++|++++  .++..|.||||+|+..|+.+++++|++ .|++|+
T Consensus       174 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n--~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din  247 (285)
T d1wdya_         174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  247 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS--CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred             CcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC--ccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc
Confidence            99999999998887655443    3579999999999999  558999999999999999999999998 588875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.8e-14  Score=133.48  Aligned_cols=221  Identities=9%  Similarity=-0.048  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           35 DLASCYISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ..+.+....|.++...|++++|+.+++++++.. .........++..+|.+|... |++++|+.+|++++.+....++..
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhcchH
Confidence            345667778999999999999999999999984 222233466888999996555 999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc-Cc
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR-NF  186 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~-~~  186 (480)
                      ....++.+++.++...|++.+|...+.+++...+.      ...+.++..+|.++...|+++.|..++.+++..... ..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence            88999999999999999999999999988754432      334667888999999999999999999999988665 44


Q ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy875          187 PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTEL  257 (480)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  257 (480)
                      ......+..++..+...+. +.++...+.++..+........ ....++..++.++...|++++|..+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  239 (366)
T d1hz4a_         169 QQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  239 (366)
T ss_dssp             GGGHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            5556788899999999999 9999999999999887766544 45667788999999999999999988764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=9.6e-17  Score=145.88  Aligned_cols=129  Identities=23%  Similarity=0.239  Sum_probs=96.5

Q ss_pred             ccCCccchhhhcc-----------CCCcCCCCcCCCchHHHHHHhhCcH-------HHHHHHHhcCCchhhhhhhhcccc
Q psy875          312 RKRAPRSHFLIKR-----------NDKDSNLNLYNIESITISRNRLGAQ-------EVRKLLSLLNADLLVHLNLSATLE  373 (480)
Q Consensus       312 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~-------~~v~~L~~~g~~~~~~~~~~~~~~  373 (480)
                      ..|+||||+|+..           .+.+++..+..+.+||+.|+..++.       ++++++.+..   +.         
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~---~~---------  172 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL---IL---------  172 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG---GE---------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhh---hh---------
Confidence            3588899988654           4567788888899999999987752       4444443322   21         


Q ss_pred             CCCccccCCCCCchHHHHHHHcCC----HH--------HHHHHHhcCCC-------------------------------
Q psy875          374 TPTTSLLEKPRGETALHVAAARGN----LT--------LVQSLLKQGHP-------------------------------  410 (480)
Q Consensus       374 ~~~~~~~~~~~g~~~l~~a~~~~~----~~--------~~~~ll~~g~~-------------------------------  410 (480)
                             .+..|+||||.++..+.    ..        ++.+++..+..                               
T Consensus       173 -------~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
T d1sw6a_         173 -------EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK  245 (301)
T ss_dssp             -------ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH
T ss_pred             -------cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhH
Confidence                   23349999998886543    22        23333333222                               


Q ss_pred             ------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q psy875          411 ------VKVQDSAGWLPLHEAANHGHTDIVQALVSAGADPNDKVQDSAGWLPLHEAA  461 (480)
Q Consensus       411 ------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~tpl~~A~  461 (480)
                            +|.+|..|+||||+|++.|+.++|++|+++|++++  ++|..|.|||++|+
T Consensus       246 ~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~--~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--CCCTTSCCGGGGTC
T ss_pred             HHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHcC
Confidence                  68889999999999999999999999999999999  66999999999885

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.2e-15  Score=134.45  Aligned_cols=212  Identities=11%  Similarity=0.085  Sum_probs=167.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhc
Q psy875           30 SDLCKDLASCYISLAQTYKDNK-QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQ  108 (480)
Q Consensus        30 ~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~  108 (480)
                      ....+....+|+++|.++...| ++++|+.++++++++    .+....+|.++|.+ +..+|++++|+.++.+|+++.+.
T Consensus        70 i~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----~p~~~~a~~~~~~~-~~~l~~~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1          70 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVWHHRRVL-VEWLRDPSQELEFIADILNQDAK  144 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH-HHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----HHhhhhHHHHHhHH-HHhhccHHHHHHHHhhhhhhhhc
Confidence            3455566789999999998876 599999999999999    78888999999999 55569999999999999998554


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc------HHHHHHHHHHHHhhh
Q psy875          109 NKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQ------YNLAVDYFNKELRLH  182 (480)
Q Consensus       109 ~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~------~~~A~~~~~~al~~~  182 (480)
                      .      ..++.++|.++..+|++++|+.+|++++...+.  ...+|.++|.++...+.      +++|++++.+++++ 
T Consensus       145 n------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~--n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~-  215 (315)
T d2h6fa1         145 N------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR--NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-  215 (315)
T ss_dssp             C------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-
T ss_pred             c------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc--cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh-
Confidence            3      578999999999999999999999999987654  44788999999776654      78999999999999 


Q ss_pred             hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHH
Q psy875          183 ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK--HDKFTELEQIKTELKSL  260 (480)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~l  260 (480)
                         .|....+|.+++.++.. .. ..++...+++++++.....+    ..++..++.+|..  .+.++.+...++++..+
T Consensus       216 ---~P~~~~~~~~l~~ll~~-~~-~~~~~~~~~~~~~l~~~~~~----~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l  286 (315)
T d2h6fa1         216 ---VPHNESAWNYLKGILQD-RG-LSKYPNLLNQLLDLQPSHSS----PYLIAFLVDIYEDMLENQCDNKEDILNKALEL  286 (315)
T ss_dssp             ---STTCHHHHHHHHHHHTT-TC-GGGCHHHHHHHHHHTTTCCC----HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             ---CCCchHHHHHHHHHHHh-cC-hHHHHHHHHHHHHhCCCcCC----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence               44446778888888654 45 67888888888876433322    2344556666644  36667778888887776


Q ss_pred             HHhh
Q psy875          261 EEKL  264 (480)
Q Consensus       261 ~~~~  264 (480)
                      ...+
T Consensus       287 ~~~l  290 (315)
T d2h6fa1         287 CEIL  290 (315)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=6e-14  Score=124.14  Aligned_cols=201  Identities=12%  Similarity=0.004  Sum_probs=137.0

Q ss_pred             hhhHHHhhccchhhhhhhHHHHh-hhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHH
Q psy875            2 RFKIALSRGIGLSDSLDSACTEL-HTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE   80 (480)
Q Consensus         2 ~~~~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   80 (480)
                      ++++++++|.. +...++...++ .+.+.....+..+.+++.+|.+|...|++++|+++|++++++    .|....++.+
T Consensus        36 ~a~~~~~~G~~-y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~  110 (259)
T d1xnfa_          36 RAQLLYERGVL-YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLN  110 (259)
T ss_dssp             HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTHHHHH
T ss_pred             HHHHHHHHHHH-HHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH----HhhhhhhHHH
Confidence            56788899988 66666644432 222333344556789999999999999999999999999999    6666778899


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc-HHHHHHHHH
Q psy875           81 IGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD-LASCYISLA  159 (480)
Q Consensus        81 lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~la  159 (480)
                      +|.+|.. .|++++|+.+++++++..+..      ......++..+...+..+.+.............+. .......++
T Consensus       111 lg~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (259)
T d1xnfa_         111 RGIALYY-GGRDKLAQDDLLAFYQDDPND------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG  183 (259)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred             HHHHHHH-HhhHHHHHHHHHHHHhhcccc------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHH
Confidence            9999555 599999999999999875432      22334556666666665555555444433332222 111111111


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          160 QTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       160 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      . ....+.++.+...+..+...    .+....+++++|.+|..+|+ +++|+.+|++|+..
T Consensus       184 ~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~  238 (259)
T d1xnfa_         184 N-ISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGD-LDSATALFKLAVAN  238 (259)
T ss_dssp             S-SCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT
T ss_pred             H-HHHHHHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHc
Confidence            1 12234445555555444444    56667889999999999999 99999999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.3e-14  Score=116.88  Aligned_cols=133  Identities=17%  Similarity=0.178  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      .+.+.|..+...|+|++|++.|.+..     +..+.+++++|.+|..+|++++|+++|++++++    .|..+.+|.++|
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l----dp~~~~a~~~~g   77 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR----DKHLAVAYFQRG   77 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH----hhhhhhhHHHHH
Confidence            44578999999999999999998743     122467899999999999999999999999999    566688999999


Q ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALDLARQNKD----------DKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL  260 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l  260 (480)
                      .++..+|+ |++|+..|++|+...+....          ......++.++|.++..+|++++|.+.++++.++
T Consensus        78 ~~~~~~g~-~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          78 MLYYQTEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhcc-HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999 99999999999875432211          1223577889999999999999999999887664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-13  Score=112.14  Aligned_cols=131  Identities=14%  Similarity=0.161  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           39 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        39 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      .+++.|..+...|+|++|++.|.++       .+....+++++|.+|+. +|++++|+.+|++|+++.+      ....+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~~~~~~~nlG~~~~~-~g~~~~A~~~~~kAl~ldp------~~~~a   72 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDK------HLAVA   72 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT------TCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhh------hhhhh
Confidence            4456788999999999999888753       11234577889999544 4999999999999998743      23678


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccccc--------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLC--------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      +.++|.+|..+|+|++|+..|++++...+.              .....+++++|.+|..+|++++|++.+.+++++..
T Consensus        73 ~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            889999999999999999999988753221              12256788889999999999999999888887743

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.4e-13  Score=106.90  Aligned_cols=140  Identities=14%  Similarity=0.145  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      +..+...|..|+..|+|++|+.+|++++...|  ....+|.++|.+|..+|++++|+.+|++++++    .|....++..
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~----~p~~~~a~~~   83 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHH----cccchHHHHH
Confidence            44566789999999999999999999998764  45688999999999999999999999999999    5566788999


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHhhccCC
Q psy875          196 IGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKL--YKKHDKFTELEQIKTELKSLEEKLDLNS  268 (480)
Q Consensus       196 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~l~~~~~~~~  268 (480)
                      +|.++..+|+ +++|+..+++++.+.   ++.   ..+...++.+  ....+.+++|.........+.++++...
T Consensus        84 ~g~~~~~~g~-~~eA~~~~~~a~~~~---p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  151 (159)
T d1a17a_          84 RAASNMALGK-FRAALRDYETVVKVK---PHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIES  151 (159)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHS---TTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHcC---CCC---HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhhhhcCccc
Confidence            9999999999 999999999998872   122   2333334433  3455667888777777667777766544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.1e-12  Score=100.43  Aligned_cols=110  Identities=19%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc-hH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD-KL  114 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~-~~  114 (480)
                      .+..+-.+|..++..|+|++|+.+|.+++++    .|....++.++|.+|... |+|++|+..+++|+.+.+..... ..
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~----~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcccHHHHHhHHHHHHHc-CchHHHHHHHHHHHHhCcccHHHHHH
Confidence            4667889999999999999999999999999    666778999999995555 99999999999999988766543 66


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      ++.+|..+|.++..++++++|+.+|++++...+.+.
T Consensus        78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  113 (128)
T d1elra_          78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD  113 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence            688999999999999999999999999986655443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.4e-12  Score=103.54  Aligned_cols=126  Identities=13%  Similarity=0.177  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHH
Q psy875           36 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLI  115 (480)
Q Consensus        36 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~  115 (480)
                      .+..+...|..|+..|+|++|+.+|++++++    .|....+|.++|.+ +..+|++++|+..|++|+++.+.      .
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~----~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~kal~~~p~------~   77 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLA-YLRTECYGYALGDATRAIELDKK------Y   77 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhcccc----chhhhhhhhhhHHH-HHhccccchHHHHHHHHHHHccc------c
Confidence            3455666777777778888888888877777    56667777777777 44447777787777777776432      2


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHH--HHhhccHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQT--YKDNKQYNLAVDY  174 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~--y~~~~~~~~A~~~  174 (480)
                      ..++.++|.+|..+|++++|+.+|++++...|...  .++..++.+  ....+.+++|+..
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~--~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45677777777777777777777777776665433  233333333  3344455555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.1e-13  Score=125.56  Aligned_cols=202  Identities=6%  Similarity=-0.108  Sum_probs=153.3

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhhhcCCCchHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEK--SFEIVQSTHEKALDLARQNKDDKLIRT  117 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~~A~~~~~kAl~~~~~~~~~~~~~~  117 (480)
                      ....+..+...|++++|+.+++++++.    .|....++..+|.++ ...+  ++++|+..+++++.+.+.     ....
T Consensus        76 l~~~~~~~~~~~~~~~al~~~~~~l~~----~pk~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~al~~~~~-----~~~~  145 (334)
T d1dcea1          76 LETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLL-SRLPEPNWARELELCARFLEADER-----NFHC  145 (334)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH-HTCSSCCHHHHHHHHHHHHHHCTT-----CHHH
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHh----CCCcHHHHHHhhHHH-HHhccccHHHHHHHHHHHHhhCch-----hhhh
Confidence            344455566678899999999999998    677777888888884 3334  589999999999988442     2233


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC------------
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN------------  185 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~------------  185 (480)
                      .+..+|.++...+++++|+.++++++...+  ....++.++|.++..+|++++|+..+.+++++.+..            
T Consensus       146 ~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p--~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  223 (334)
T d1dcea1         146 WDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP  223 (334)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred             hhhHHHHHHHhccccHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Confidence            456788999999999999999999997775  445789999999999999988766665554442210            


Q ss_pred             --c------------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875          186 --F------------PEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE  251 (480)
Q Consensus       186 --~------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  251 (480)
                        .            +.....+..+|.++...++ +.+|+..+.+++..      .+....++..+|.++..+|++++|.
T Consensus       224 ~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~eA~  296 (334)
T d1dcea1         224 NDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS-ELESCKELQELEPE------NKWCLLTIILLMRALDPLLYEKETL  296 (334)
T ss_dssp             SCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCTGGGHHHHH
T ss_pred             hhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh-HHHHHHHHHHHHhh------CchHHHHHHHHHHHHHHCCCHHHHH
Confidence              0            0011122346667777788 88888887776544      6778899999999999999999999


Q ss_pred             HHHHHHHHH
Q psy875          252 QIKTELKSL  260 (480)
Q Consensus       252 ~~~~~~~~l  260 (480)
                      ++++++.++
T Consensus       297 ~~~~~ai~l  305 (334)
T d1dcea1         297 QYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999886

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.39  E-value=4.8e-12  Score=102.14  Aligned_cols=110  Identities=11%  Similarity=0.040  Sum_probs=87.9

Q ss_pred             HHHHHHHH--HHHHHHhhccHHHHHHHHHHHHHhhhcCCCc------hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q psy875           74 AVKTLGEI--GDLYELQEKSFEIVQSTHEKALDLARQNKDD------KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSS  145 (480)
Q Consensus        74 ~~~~~~~l--g~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~------~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~  145 (480)
                      .+.++..+  |..++.. |+|++|+..|++|+++.+..++.      ...+.+|.++|.+|..+|+|++|+..+++++..
T Consensus         6 ~a~a~~~l~~g~~~~~~-g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVA-GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            34455555  7774444 89999999999999988776542      345678999999999999999999999998865


Q ss_pred             ccc---------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          146 DLC---------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       146 ~~~---------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .+.         +....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            432         234667899999999999999999999999998655

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-11  Score=95.80  Aligned_cols=102  Identities=17%  Similarity=0.227  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKT  192 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~  192 (480)
                      +..+.++|..|...|+|++|+.+|++++...|.  ...++.++|.+|..+|+|++|+.++++++++.+.   .....+.+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            456779999999999999999999999987654  4578999999999999999999999999998665   23556789


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          193 LGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       193 ~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +..+|.++..+++ +++|+.+|++++..
T Consensus        82 ~~~lg~~~~~~~~-~~~A~~~~~kal~~  108 (128)
T d1elra_          82 YARIGNSYFKEEK-YKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHhc
Confidence            9999999999999 99999999999865

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.38  E-value=5.2e-12  Score=101.93  Aligned_cols=128  Identities=10%  Similarity=0.053  Sum_probs=100.4

Q ss_pred             HHHHHHHH--HHHHHhcCChHHHHHHHHHHhccccc----------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          115 IRTVMRSI--KKLYKKHDNLDSACSELHTVLSSDLC----------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       115 ~~~~~~~l--~~~y~~~~~~~~A~~~~~~~l~~~~~----------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      ++.++..+  |..+...|+|++|+..|++++.+.+.          +..+.+|.++|.+|..+|+|++|+..+++++++.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            44555555  88899999999999999999987654          1246789999999999999999999999999885


Q ss_pred             hc-------CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Q psy875          183 AR-------NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDD-KLIRTVMRSMKKLYKK  243 (480)
Q Consensus       183 ~~-------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~  243 (480)
                      +.       ..+....+++++|.+|..+|+ +++|+..|++|+++.++.... .........++.-+.+
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~-~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHH
Confidence            43       234556789999999999999 999999999999998876544 3333444444444333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-11  Score=101.25  Aligned_cols=88  Identities=11%  Similarity=0.013  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      ..++.++|.+|.++|+|++|+.++++++...|  ....++..+|.+|..+|+|++|+.+|++++++.++    ...+...
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~----n~~~~~~  135 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN----NKAAKTQ  135 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----CHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccc--cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----CHHHHHH
Confidence            45678999999999999999999999997764  45678999999999999999999999999998443    3455666


Q ss_pred             HHHHHHHhCCchHHH
Q psy875          196 IGDLYELQEKPFELV  210 (480)
Q Consensus       196 l~~~~~~~~~~~~~A  210 (480)
                      ++.+....++ ..+.
T Consensus       136 l~~~~~~~~~-~~~~  149 (170)
T d1p5qa1         136 LAVCQQRIRR-QLAR  149 (170)
T ss_dssp             HHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHH-HHHH
Confidence            7777766665 4433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.1e-12  Score=95.26  Aligned_cols=96  Identities=9%  Similarity=0.063  Sum_probs=54.5

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMR  120 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~  120 (480)
                      ...|..++..|+|++|+.+|.++++.    .|....+|.++|.+|.. .|++++|+..+.+++++.+..      ..++.
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~----~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~   75 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDW------GKGYS   75 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchhhhhcccccccc-cccccccchhhhhHHHhccch------hhHHH
Confidence            34566666666666666666666665    44455556666666333 366666666666666553321      33455


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhcccc
Q psy875          121 SIKKLYKKHDNLDSACSELHTVLSSDL  147 (480)
Q Consensus       121 ~l~~~y~~~~~~~~A~~~~~~~l~~~~  147 (480)
                      ++|.+|..+|++++|+.+|++++...|
T Consensus        76 ~~g~~~~~~~~~~~A~~~~~~a~~~~p  102 (117)
T d1elwa_          76 RKAAALEFLNRFEEAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            666666666666666666666655443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7e-12  Score=102.66  Aligned_cols=126  Identities=17%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      .+..+...|..++..|+|++|+.+|++++...+.             .....++.++|.+|.++|+|++|+.++++++++
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4566789999999999999999999999865443             123567889999999999999999999999999


Q ss_pred             hhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q psy875          182 HARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELE  251 (480)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  251 (480)
                          .|..+.++..+|.+|..+|+ |++|+..|++++++.      |....+...++.+...++...+..
T Consensus        92 ----~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          92 ----DSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cccchhhhHHHHHHHHHhhh-HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence                55567899999999999999 999999999999872      223455666777777766665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.1e-12  Score=96.97  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +...|..+...|+|++|+.+|++++...|  ....++.++|.+|..+|++++|+.++.+++++    .|..+.+|.++|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~g~   79 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----KPDWGKGYSRKAA   79 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchhhhhcccccccccccccccchhhhhHHHh----ccchhhHHHHHHH
Confidence            46789999999999999999999997664  45688999999999999999999999999999    4455678999999


Q ss_pred             HHHHhCCchHHHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ++..+|+ +++|+..|++++++
T Consensus        80 ~~~~~~~-~~~A~~~~~~a~~~  100 (117)
T d1elwa_          80 ALEFLNR-FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHTT
T ss_pred             HHHHccC-HHHHHHHHHHHHHh
Confidence            9999999 99999999999876

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=7.4e-12  Score=102.58  Aligned_cols=123  Identities=16%  Similarity=0.176  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccc--------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLH  182 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~  182 (480)
                      ..+...|..+...|+|++|+..|++++...+.              +....++.++|.+|.++|+|++|+.++++++++ 
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  106 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  106 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-
Confidence            34567889999999999999999988753321              345678899999999999999999999999998 


Q ss_pred             hcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH
Q psy875          183 ARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTEL  250 (480)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  250 (480)
                         .|..+.+|+++|.+|..+|+ +++|+..|++++++.      +....+...+..++.+.....++
T Consensus       107 ---~p~~~~a~~~~g~~~~~l~~-~~~A~~~~~~al~l~------p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         107 ---DPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIA------PEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhhhhHHHhHHHHHHHccC-HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence               45667889999999999999 999999999999882      22344566667776666555544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.31  E-value=4.5e-11  Score=97.55  Aligned_cols=85  Identities=12%  Similarity=0.030  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      ...++.|+|.+|..+|+|++|+.++++++...|  ....+++++|.+|..+|+|++|+..|++++++.+    ....+..
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P----~n~~~~~  136 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP----QNKAARL  136 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhccc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHH
Confidence            356788999999999999999999999997764  4568899999999999999999999999999843    3345666


Q ss_pred             HHHHHHHHhCC
Q psy875          195 EIGDLYELQEK  205 (480)
Q Consensus       195 ~l~~~~~~~~~  205 (480)
                      .++.+....++
T Consensus       137 ~l~~~~~~~~~  147 (168)
T d1kt1a1         137 QIFMCQKKAKE  147 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777766665

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7.2e-12  Score=105.84  Aligned_cols=102  Identities=16%  Similarity=0.146  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEI  196 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l  196 (480)
                      ..+...|..|...|+|++|+.+|++++...|  ..+.+|.++|.+|...|+|++|+.+|++++++    .|..+.+|.++
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l----~p~~~~a~~~l   78 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHFFL   78 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh----CCCcHHHHHHH
Confidence            4467899999999999999999999998764  45688999999999999999999999999998    55567789999


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHcC
Q psy875          197 GDLYELQEKPFELVVSTHEKALDLARQNK  225 (480)
Q Consensus       197 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~  225 (480)
                      |.+|..+|+ |++|+..|++|+.+.....
T Consensus        79 g~~~~~l~~-~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          79 GQCQLEMES-YDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCC-HHHHHHHHHHHHHhCcccH
Confidence            999999999 9999999999999876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.31  E-value=1.9e-11  Score=98.15  Aligned_cols=81  Identities=12%  Similarity=0.044  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                      ..++.|+|.+|..+|++++|+.++++++...|  ....+++++|.+|..+|+|++|+.+|++++++.+.    ...+...
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p--~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~----n~~~~~~  140 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN----NLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----CHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccc--hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHH
Confidence            34678999999999999999999999987764  44578999999999999999999999999998443    3344555


Q ss_pred             HHHHHHH
Q psy875          196 IGDLYEL  202 (480)
Q Consensus       196 l~~~~~~  202 (480)
                      ++.+..+
T Consensus       141 l~~~~~k  147 (153)
T d2fbna1         141 YELCVNK  147 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.9e-12  Score=106.38  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHH
Q psy875           78 LGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYIS  157 (480)
Q Consensus        78 ~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  157 (480)
                      +...|..|+.. |+|++|+.+|++|+.+.+..      ..+|.++|.+|..+|+|++|+.+|++++...|  ....+|.+
T Consensus         7 l~~~Gn~~~~~-g~~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--~~~~a~~~   77 (201)
T d2c2la1           7 LKEQGNRLFVG-RKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--CcHHHHHH
Confidence            44567774444 77777777777777664322      45666777777777777777777777775543  34456777


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhh
Q psy875          158 LAQTYKDNKQYNLAVDYFNKELRLHA  183 (480)
Q Consensus       158 la~~y~~~~~~~~A~~~~~~al~~~~  183 (480)
                      +|.+|..+|+|++|+.+|++++++.+
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            77777777777777777777776643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.30  E-value=1.5e-11  Score=98.72  Aligned_cols=101  Identities=23%  Similarity=0.222  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELR  180 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~  180 (480)
                      .+..+...|..++..|+|.+|+..|++++...+.              +....++.|+|.+|.++|+|++|+++++++++
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            3456678999999999999999999998864432              11245788999999999999999999999999


Q ss_pred             hhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          181 LHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      +    .|....+|+++|.++..+|+ +++|+..|++++++
T Consensus        96 ~----~p~~~ka~~~~g~~~~~lg~-~~~A~~~~~~al~l  130 (153)
T d2fbna1          96 I----DKNNVKALYKLGVANMYFGF-LEEAKENLYKAASL  130 (153)
T ss_dssp             H----STTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             c----cchhhhhhHHhHHHHHHcCC-HHHHHHHHHHHHHh
Confidence            9    55567899999999999999 99999999999988

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.5e-12  Score=119.69  Aligned_cols=191  Identities=3%  Similarity=-0.188  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhccCchHHHH-HHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCC
Q psy875           35 DLASCYISLAQTYKDNK--QYNLAVDYFNKELRLHARNFPEAVKT-LGEIGDLYELQEKSFEIVQSTHEKALDLARQNKD  111 (480)
Q Consensus        35 ~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~-~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~  111 (480)
                      ....+++.+|.++...+  ++++|+..+.++++.    .+....+ +..+|.+ +...+.+++|+.++++++.+.+.   
T Consensus       105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~~~~~~-~~~~~~~~~Al~~~~~~i~~~p~---  176 (334)
T d1dcea1         105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVA-AQAAVAPAEELAFTDSLITRNFS---  176 (334)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH-HHTCCCHHHHHHHHHTTTTTTCC---
T ss_pred             CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh----CchhhhhhhhHHHHH-HHhccccHHHHHHHHHHHHcCCC---
Confidence            34556778887777655  589999999999998    4444444 4566778 55559999999999999887543   


Q ss_pred             chHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc----------------------------ccHHHHHHHHHHHHH
Q psy875          112 DKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC----------------------------KDLASCYISLAQTYK  163 (480)
Q Consensus       112 ~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~----------------------------~~~~~~~~~la~~y~  163 (480)
                         ...++.++|.++..+|++++|+..+++++...+.                            +.....+..+|.++.
T Consensus       177 ---~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~  253 (334)
T d1dcea1         177 ---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST  253 (334)
T ss_dssp             ---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHH
T ss_pred             ---CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence               2567889999999999887765554433322211                            111122335688899


Q ss_pred             hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy875          164 DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKK  243 (480)
Q Consensus       164 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  243 (480)
                      ..+++++|+..+.++++.    .+....++..+|.++...|+ +++|+.+|++++++      .|.....+..|+..+..
T Consensus       254 ~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~-~~eA~~~~~~ai~l------dP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         254 VLQSELESCKELQELEPE----NKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAV------DPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh----CchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH------CcccHHHHHHHHHHHhH
Confidence            999999999999999887    67888999999999999999 99999999999998      55566777777777665


Q ss_pred             cCCh
Q psy875          244 HDKF  247 (480)
Q Consensus       244 ~g~~  247 (480)
                      ...+
T Consensus       323 e~~~  326 (334)
T d1dcea1         323 ENSV  326 (334)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            4433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=2.6e-11  Score=99.26  Aligned_cols=140  Identities=12%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           34 KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        34 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      ...+..+...|..++..|+|++|+..|.+++++ .   +..           ... ....       +...      ..+
T Consensus        24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~-~---~~~-----------~~~-~~~~-------~~~~------~~~   74 (169)
T d1ihga1          24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY-V---EGS-----------RAA-AEDA-------DGAK------LQP   74 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H---HHH-----------HHH-SCHH-------HHGG------GHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-h---hhh-----------hhh-hhhH-------HHHH------hCh
Confidence            345666777788888888888888888877766 1   100           000 0000       0000      124


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTL  193 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  193 (480)
                      ....++.++|.+|..+|+|++|+.+|.+++...|  ..+.+++++|.+|..+|+|++|+..|++++++.++    ...+.
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p--~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~----n~~~~  148 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE----DKAIQ  148 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh--hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHH
Confidence            4567889999999999999999999999998764  55688999999999999999999999999999443    34456


Q ss_pred             HHHHHHHHHhCCchHH
Q psy875          194 GEIGDLYELQEKPFEL  209 (480)
Q Consensus       194 ~~l~~~~~~~~~~~~~  209 (480)
                      ..++.+....++ +.+
T Consensus       149 ~~l~~~~~~l~~-~~~  163 (169)
T d1ihga1         149 AELLKVKQKIKA-QKD  163 (169)
T ss_dssp             HHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHH-HHH
Confidence            667777666555 444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.27  E-value=2.7e-11  Score=98.93  Aligned_cols=124  Identities=21%  Similarity=0.219  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-------------ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-------------KDLASCYISLAQTYKDNKQYNLAVDYFNKELRL  181 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~  181 (480)
                      .+..+...|..+...|+|.+|+.+|++++...+.             .....++.++|.+|..+|+|++|+.++++++++
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            3566788999999999999999999988854322             223567889999999999999999999999999


Q ss_pred             hhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH
Q psy875          182 HARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTE  249 (480)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  249 (480)
                          .|....+++++|.++..+|+ |++|+..|++++.+      .|....+...++.+....+.+.+
T Consensus        94 ----~p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          94 ----DSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEV------NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHhHHH
Confidence                55667899999999999999 99999999999877      23334556666777666665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.26  E-value=4.7e-10  Score=98.95  Aligned_cols=197  Identities=17%  Similarity=0.164  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHhhhcCCCch
Q psy875           37 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL---QEKSFEIVQSTHEKALDLARQNKDDK  113 (480)
Q Consensus        37 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~---~~~~~~~A~~~~~kAl~~~~~~~~~~  113 (480)
                      +.+++.||..++.++++++|+++|++|.+.      ....++..+|.+|..   ...++..|..++.++.....      
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~------   69 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY------   69 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc------
Confidence            357889999999999999999999999776      234567889999665   13688899888888775321      


Q ss_pred             HHHHHHHHHHHHHHh----cCChHHHHHHHHHHhccccc--------------------------------ccHHHHHHH
Q psy875          114 LIRTVMRSIKKLYKK----HDNLDSACSELHTVLSSDLC--------------------------------KDLASCYIS  157 (480)
Q Consensus       114 ~~~~~~~~l~~~y~~----~~~~~~A~~~~~~~l~~~~~--------------------------------~~~~~~~~~  157 (480)
                        ..+..++|.++..    ..+.++|...++++......                                ......+.+
T Consensus        70 --~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  147 (265)
T d1ouva_          70 --SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTI  147 (265)
T ss_dssp             --HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --cchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhh
Confidence              2334456665554    34667777776655422111                                122345666


Q ss_pred             HHHHHHh----hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHcCCcHH
Q psy875          158 LAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDLARQNKDDKL  229 (480)
Q Consensus       158 la~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~  229 (480)
                      ||.+|..    ..+...+..+++++.+.      ....+++++|.+|..    .++ +++|+.+|+++.+.    ++   
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~------g~~~A~~~lg~~y~~g~~~~~d-~~~A~~~~~~aa~~----g~---  213 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDL------KDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACEL----EN---  213 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHT----TC---
T ss_pred             hhhhhccCCCcccccccchhhhhccccc------cccccccchhhhcccCcccccc-hhhhhhhHhhhhcc----cC---
Confidence            7777764    35566666666666543      225678899999987    556 99999999998664    22   


Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q psy875          230 IRTVMRSMKKLYKK----HDKFTELEQIKTELKSLEE  262 (480)
Q Consensus       230 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~l~~  262 (480)
                       ..+...||.+|..    ..++++|..+++++.....
T Consensus       214 -~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         214 -GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             -HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence             3567889999986    4589999999999987653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.7e-11  Score=93.63  Aligned_cols=112  Identities=9%  Similarity=0.038  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHH
Q psy875           80 EIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYI  156 (480)
Q Consensus        80 ~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~  156 (480)
                      +++.. ....+++++|++.|++|+.+.+..      ..+++++|.++...+   ++++|+..|++++...+.+....+++
T Consensus         4 ~l~n~-~~~~~~l~~Ae~~Y~~aL~~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~   76 (122)
T d1nzna_           4 AVLNE-LVSVEDLLKFEKKFQSEKAAGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   76 (122)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHH-hcCHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence            45555 334489999999999999885543      567889999998644   56679999999988777666677899


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH
Q psy875          157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL  202 (480)
Q Consensus       157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~  202 (480)
                      ++|.+|..+|+|++|+++|++++++.    |....+...++.+..+
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~----P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQTE----PQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHH
Confidence            99999999999999999999999983    3334455555544443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.23  E-value=2.4e-11  Score=91.70  Aligned_cols=93  Identities=16%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      ..++|..+...|++++|+.+|++++...|  ....++..+|.+|...|++++|+.+|++++++    .|....++..+|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~la~   92 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAV   92 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccc--ccchhhhhhhhhhhhhhhHHHhhccccccccc----ccccccchHHHHH
Confidence            46789999999999999999999997765  45688999999999999999999999999999    5566789999999


Q ss_pred             HHHHhCCchHHHHHHHHHHH
Q psy875          199 LYELQEKPFELVVSTHEKAL  218 (480)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~al  218 (480)
                      +|..+|+ +++|++++++.+
T Consensus        93 ~y~~~g~-~~~A~~~l~~~l  111 (112)
T d1hxia_          93 SHTNEHN-ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHCCC-HHHHHHHHHHHh
Confidence            9999999 999999999875

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.8e-12  Score=121.10  Aligned_cols=93  Identities=11%  Similarity=0.130  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q psy875          118 VMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIG  197 (480)
Q Consensus       118 ~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~  197 (480)
                      ++.++|..+...|++++|+..+++++...+    ..++.++|.++..+|+|++|+.+|++|+++    .|..+..|+++|
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l----~P~~~~~~~~Lg  193 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC----QHCLVHLGDIARYRNQTSQAESYYRHAAQL----VPSNGQPYNQLA  193 (497)
T ss_dssp             ---------------------CCHHHHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTBSHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCchHHHHHHH
Confidence            344455555555555555555444442221    234444555555555555555555555554    233334455555


Q ss_pred             HHHHHhCCchHHHHHHHHHHHH
Q psy875          198 DLYELQEKPFELVVSTHEKALD  219 (480)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~al~  219 (480)
                      .++...|+ +.+|+.+|.+|+.
T Consensus       194 ~~~~~~~~-~~~A~~~y~ral~  214 (497)
T d1ya0a1         194 ILASSKGD-HLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHS
T ss_pred             HHHHHcCC-HHHHHHHHHHHHh
Confidence            55555555 5555555555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.18  E-value=7.1e-11  Score=89.07  Aligned_cols=94  Identities=13%  Similarity=-0.046  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy875          154 CYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIRTV  233 (480)
Q Consensus       154 ~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  233 (480)
                      ..+.+|.++.+.|++++|+.+|+++++.    .|..+.+|..+|.++...|+ +++|+.+|++++++      .|....+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~~------~p~~~~a   86 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEK-DGLAIIALNHARML------DPKDIAV   86 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc----ccccchhhhhhhhhhhhhhh-HHHhhccccccccc------ccccccc
Confidence            3568999999999999999999999998    45557899999999999999 99999999999998      5556788


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH
Q psy875          234 MRSMKKLYKKHDKFTELEQIKTELK  258 (480)
Q Consensus       234 ~~~l~~~~~~~g~~~~A~~~~~~~~  258 (480)
                      +..||.+|..+|++++|++.+++++
T Consensus        87 ~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          87 HAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999874

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.4e-11  Score=116.51  Aligned_cols=163  Identities=6%  Similarity=-0.017  Sum_probs=88.3

Q ss_pred             CchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccccc
Q psy875           71 FPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKD  150 (480)
Q Consensus        71 ~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~  150 (480)
                      .+.....+.++|.+|. ..+++++|+..+.+++....        ..++.++|.++..+|++++|+.+|++++...|+  
T Consensus       116 ~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~--  184 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS--  184 (497)
T ss_dssp             ----------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred             ChhhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--
Confidence            4455566777888844 44888888888888776532        356778888888888888888888888877654  


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHH
Q psy875          151 LASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLI  230 (480)
Q Consensus       151 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  230 (480)
                      .+.+|++||.+|...|++.+|+.+|.+|+.+    .+....++.+|+.++.+..+ ..++..          ........
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~----~~~~~~a~~nL~~~~~~~~~-~~~~~~----------~~~~~~~~  249 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAV----KFPFPAASTNLQKALSKALE-SRDEVK----------TKWGVSDF  249 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS----SBCCHHHHHHHHHHHHHHTT-SCCCCC----------SSCCHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHhhh-hhhhhc----------cccccchH
Confidence            3477888888888888888888888888877    23345677777777766554 222110          11112233


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          231 RTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       231 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      ...+..+..++...+.++......++...
T Consensus       250 ~~~f~~~~~~l~~~~~~~~~~~~~~~~~~  278 (497)
T d1ya0a1         250 IKAFIKFHGHVYLSKSLEKLSPLREKLEE  278 (497)
T ss_dssp             HHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchhhHHHHHHHHHH
Confidence            33444555555566666666665555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.3e-10  Score=86.34  Aligned_cols=114  Identities=9%  Similarity=-0.107  Sum_probs=90.2

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           41 ISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL--QEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        41 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~--~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      ..++..+...+++++|.+.|++++.+    .|....+++++|.++..  ..+++++|+..+++++....    .+....+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~----~~~~~~~   74 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----KEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC----CchHHHH
Confidence            35677788899999999999999999    77777889999999432  24678889999999886422    2444668


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD  164 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~  164 (480)
                      ++++|.+|..+|+|++|+.+|++++.+.|...  .+...++.+..+
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~--~A~~l~~~I~~~  118 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN--QAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHH
Confidence            99999999999999999999999998886544  455555555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8e-10  Score=80.21  Aligned_cols=82  Identities=15%  Similarity=0.000  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccccc-----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHH
Q psy875          117 TVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-----KDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVK  191 (480)
Q Consensus       117 ~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  191 (480)
                      .-++++|.++...|+|++|+.+|++++...+.     ...+.++.+||.+|.++|++++|+.+|++++++    .|....
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l----~P~~~~   81 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL----DPEHQR   81 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh----CcCCHH
Confidence            34578999999999999999999999876543     345788999999999999999999999999998    444456


Q ss_pred             HHHHHHHHHHH
Q psy875          192 TLGEIGDLYEL  202 (480)
Q Consensus       192 ~~~~l~~~~~~  202 (480)
                      ++.+++.+...
T Consensus        82 a~~Nl~~~~~~   92 (95)
T d1tjca_          82 ANGNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=6e-10  Score=88.04  Aligned_cols=113  Identities=12%  Similarity=0.201  Sum_probs=63.6

Q ss_pred             HhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q psy875           47 YKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLY  126 (480)
Q Consensus        47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y  126 (480)
                      +.+.+.|++|+..|++++++    .|..+.++.++|.++... +++..+.+                             
T Consensus         7 ~~r~~~fe~A~~~~e~al~~----~P~~~~~~~~~g~~l~~~-~~~~~~~e-----------------------------   52 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS----NPLDADNLTRWGGVLLEL-SQFHSISD-----------------------------   52 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH-HHHSCHHH-----------------------------
T ss_pred             HHHHccHHHHHHHHHHHHhh----CCcchHHHHHHHHHHHHh-hhhhhhhH-----------------------------
Confidence            45567788888888888887    666677777787774332 33322211                             


Q ss_pred             HhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhc-----------cHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Q psy875          127 KKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNK-----------QYNLAVDYFNKELRLHARNFPEAVKTLGE  195 (480)
Q Consensus       127 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~  195 (480)
                       ..+.+++|+.+|++++.+.|  ....+++++|.+|..+|           .|++|+++|++++++.    |.....+..
T Consensus        53 -~~~~~~~Ai~~~~kAl~l~P--~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~----P~~~~~~~~  125 (145)
T d1zu2a1          53 -AKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ----PDNTHYLKS  125 (145)
T ss_dssp             -HHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhcc--hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC----CCHHHHHHH
Confidence             11233455555555554432  22344555555555443           4677778888887773    333344444


Q ss_pred             HHHHH
Q psy875          196 IGDLY  200 (480)
Q Consensus       196 l~~~~  200 (480)
                      |+.+.
T Consensus       126 L~~~~  130 (145)
T d1zu2a1         126 LEMTA  130 (145)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.6e-09  Score=78.52  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc---CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR---NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDK  228 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  228 (480)
                      +.-.+.+|.++.++|+|++|+.+|++|+++.+.   ..+..+.++.++|.++.++|+ +++|+.+|++++++      .|
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-~~~A~~~y~~aL~l------~P   77 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLEL------DP   77 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-hHHHHHHHHHHHHh------Cc
Confidence            345679999999999999999999999998665   234567899999999999999 99999999999998      34


Q ss_pred             HHHHHHHHHHHHHHH
Q psy875          229 LIRTVMRSMKKLYKK  243 (480)
Q Consensus       229 ~~~~~~~~l~~~~~~  243 (480)
                      ....++.+++.+...
T Consensus        78 ~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          78 EHQRANGNLKYFEYI   92 (95)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            445677777665544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=7.8e-10  Score=87.36  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=78.9

Q ss_pred             HHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh----------ccHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q psy875          125 LYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDN----------KQYNLAVDYFNKELRLHARNFPEAVKTLG  194 (480)
Q Consensus       125 ~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~  194 (480)
                      .|.+++.|++|+..|++++...|  ..+.+++++|.++...          +.+++|+.+|++++++    .|..+.+++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P--~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l----~P~~~~a~~   79 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVW   79 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh----cchhhHHHh
Confidence            35667778888888888886664  4457788888888744          5568999999999999    566678899


Q ss_pred             HHHHHHHHhCC----------chHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q psy875          195 EIGDLYELQEK----------PFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKF  247 (480)
Q Consensus       195 ~l~~~~~~~~~----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  247 (480)
                      ++|.+|..+|+          .|++|.++|++++++      .|........|+.+....+.+
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l------~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE------QPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc------CCCHHHHHHHHHHHHHHHHHH
Confidence            99999987653          157788888888777      333344555555554433333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=2.2e-07  Score=83.30  Aligned_cols=194  Identities=10%  Similarity=0.057  Sum_probs=146.2

Q ss_pred             cccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q psy875           50 NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKH  129 (480)
Q Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~  129 (480)
                      .+.+++|...|++|++..   .+.....+...+.+ ....|+++.|...|++++...+..     ...++...+......
T Consensus        77 ~~~~~~a~~i~~ral~~~---~p~~~~l~~~ya~~-~~~~~~~~~a~~i~~~~l~~~~~~-----~~~~w~~~~~~~~~~  147 (308)
T d2onda1          77 KLFSDEAANIYERAISTL---LKKNMLLYFAYADY-EESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRA  147 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTT---TTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHc---CCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHc
Confidence            345678888888887641   33344566777888 555599999999999999754322     234567778889999


Q ss_pred             CChHHHHHHHHHHhcccccccHHHHHHHHHHHH-HhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchH
Q psy875          130 DNLDSACSELHTVLSSDLCKDLASCYISLAQTY-KDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFE  208 (480)
Q Consensus       130 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (480)
                      |++++|...|++++...+...  ..+...|... ...|+.+.|...|+++++..+.    ....+...+......|+ ++
T Consensus       148 ~~~~~ar~i~~~al~~~~~~~--~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~----~~~~w~~y~~~~~~~g~-~~  220 (308)
T d2onda1         148 EGIKSGRMIFKKAREDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNE-DN  220 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCT--HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCC-HH
T ss_pred             CChHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHcCC-hH
Confidence            999999999999997776544  5566677654 4568999999999999998433    35678888999999999 99


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          209 LVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       209 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      .|...|++|+....  .++.....++.....+-...|+.+.+...++++.++.
T Consensus       221 ~aR~~fe~ai~~~~--~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         221 NTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            99999999986421  1222234566677777888999999999998887754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=5.8e-07  Score=80.45  Aligned_cols=187  Identities=7%  Similarity=-0.011  Sum_probs=135.8

Q ss_pred             cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH-------------HHhhccHHHHHHHHHHHHHhhhcCCCchHHHHH
Q psy875           52 QYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY-------------ELQEKSFEIVQSTHEKALDLARQNKDDKLIRTV  118 (480)
Q Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y-------------~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~  118 (480)
                      ..+.+...|++|+.. ....+..   |...+...             ....+..++|...|++|+.....  ..   ..+
T Consensus        31 ~~~Rv~~vyerAl~~-~~~~~~l---W~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p--~~---~~l  101 (308)
T d2onda1          31 ITKRVMFAYEQCLLV-LGHHPDI---WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--KN---MLL  101 (308)
T ss_dssp             HHHHHHHHHHHHHHH-HTTCHHH---HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT--TC---HHH
T ss_pred             hHHHHHHHHHHHHHH-CCCCHHH---HHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC--CC---HHH
Confidence            356677889999888 3334433   33332221             11224567888889988865321  11   345


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q psy875          119 MRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGD  198 (480)
Q Consensus       119 ~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~  198 (480)
                      +...+.++..+|++++|...|++++...+.. ...++...+......|+++.|.+.|+++++..+..    ...+...|.
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~----~~~~~~~a~  176 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHVYVTAAL  176 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC----THHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHH
Confidence            6778889999999999999999999766543 34567888899999999999999999999885443    345666676


Q ss_pred             HHHH-hCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy875          199 LYEL-QEKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS  259 (480)
Q Consensus       199 ~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  259 (480)
                      .... .|+ .+.|...|++++...      +.....+...+.+....|++++|...++++..
T Consensus       177 ~e~~~~~~-~~~a~~i~e~~l~~~------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         177 MEYYCSKD-KSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHTSCC-HHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhccC-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6555 466 999999999998762      22245666778889999999999999999865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.57  E-value=4.6e-07  Score=79.11  Aligned_cols=198  Identities=15%  Similarity=0.107  Sum_probs=127.8

Q ss_pred             hHHHhhccchhhhhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccCchHHHHHH
Q psy875            4 KIALSRGIGLSDSLDSACTELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLG   79 (480)
Q Consensus         4 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   79 (480)
                      +.++++|..++. -++...++..-++.-. ..-+.+++.||.+|..    ..++..|..++.++...      ....+..
T Consensus         3 ~~~~~lG~~~~~-~~d~~~A~~~~~kAa~-~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~------~~~~a~~   74 (265)
T d1ouva_           3 KELVGLGAKSYK-EKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------NYSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHH
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc------cccchhh
Confidence            567888887443 3333333222222111 1235688999999987    67999999999998775      1223345


Q ss_pred             HHHHHHHH---hhccHHHHHHHHHHHHHhhhc---------------CCCc-------------hHHHHHHHHHHHHHHh
Q psy875           80 EIGDLYEL---QEKSFEIVQSTHEKALDLARQ---------------NKDD-------------KLIRTVMRSIKKLYKK  128 (480)
Q Consensus        80 ~lg~~y~~---~~~~~~~A~~~~~kAl~~~~~---------------~~~~-------------~~~~~~~~~l~~~y~~  128 (480)
                      .+|.++..   ...+.+.|..+++++......               ....             ......+.++|.+|..
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence            66666332   125778888888777643110               0000             0112234477777775


Q ss_pred             ----cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q psy875          129 ----HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLY  200 (480)
Q Consensus       129 ----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~  200 (480)
                          ..+...+..+++.+...    ....+.+++|.+|..    .+++++|+.+|+++.+.      ..+.++++||.+|
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~------g~~~a~~~LG~~y  224 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------ENGGGCFNLGAMQ  224 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred             CCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcc------cCHHHHHHHHHHH
Confidence                33556666666665432    235788899999987    67999999999999776      1256788999999


Q ss_pred             HH----hCCchHHHHHHHHHHHHH
Q psy875          201 EL----QEKPFELVVSTHEKALDL  220 (480)
Q Consensus       201 ~~----~~~~~~~A~~~~~~al~~  220 (480)
                      ..    .++ +++|.++|++|.+.
T Consensus       225 ~~G~g~~~n-~~~A~~~~~kAa~~  247 (265)
T d1ouva_         225 YNGEGVTRN-EKQAIENFKKGCKL  247 (265)
T ss_dssp             HTTSSSSCC-STTHHHHHHHHHHH
T ss_pred             HcCCCCccC-HHHHHHHHHHHHHC
Confidence            86    336 99999999999765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=1.3e-06  Score=70.87  Aligned_cols=102  Identities=8%  Similarity=-0.036  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhccccc--------------------ccHHHHHHHHHHHHHhhccHHHHHHHH
Q psy875          116 RTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC--------------------KDLASCYISLAQTYKDNKQYNLAVDYF  175 (480)
Q Consensus       116 ~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~--------------------~~~~~~~~~la~~y~~~~~~~~A~~~~  175 (480)
                      ...+...|......|++++|+..|.+++...+.                    +....++.+++.++...|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            455677788888888888888888888765433                    223467888999999999999999999


Q ss_pred             HHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy875          176 NKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLAR  222 (480)
Q Consensus       176 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  222 (480)
                      ++++++    .|..-.+|..++.++...|+ +.+|+..|+++.....
T Consensus        91 ~~al~~----~P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          91 EALTFE----HPYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHH----STTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHh----CCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence            999999    56667889999999999999 9999999999987654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=2.7e-06  Score=68.89  Aligned_cols=108  Identities=9%  Similarity=0.017  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcC------------------cHHHHHHHHHHHHHHHHhCCchHHHHHH
Q psy875          152 ASCYISLAQTYKDNKQYNLAVDYFNKELRLHARN------------------FPEAVKTLGEIGDLYELQEKPFELVVST  213 (480)
Q Consensus       152 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~  213 (480)
                      ...+...|......|++++|+..|.+|+.+..+.                  .+....++..++.++...|+ +++|+.+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~-~~~Al~~   89 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR-ASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHH
Confidence            5678889999999999999999999999986542                  12345788999999999999 9999999


Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhhcc
Q psy875          214 HEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSL-EEKLDL  266 (480)
Q Consensus       214 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l-~~~~~~  266 (480)
                      +++++.+      .+....++..++.++...|++.+|++.|+++... .+.++.
T Consensus        90 ~~~al~~------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~  137 (179)
T d2ff4a2          90 LEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI  137 (179)
T ss_dssp             HHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence            9999998      6667789999999999999999999999999875 455555

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.26  E-value=2e-06  Score=74.44  Aligned_cols=123  Identities=11%  Similarity=0.013  Sum_probs=55.0

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHH
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYN  169 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~  169 (480)
                      |++++|+..++++++..+..      ..++..+|.+|...|++++|+..|++++...+  .....+..++.++...+..+
T Consensus        10 G~l~eAl~~l~~al~~~P~d------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P--~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLFP--EYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhccccH
Confidence            45555555555554442221      33344455555555555555555555443332  22234444444444444444


Q ss_pred             HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHc
Q psy875          170 LAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQN  224 (480)
Q Consensus       170 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  224 (480)
                      ++...+.+....   .++.....+...+.++...|+ +++|...+.++.+.....
T Consensus        82 ~a~~~~~~~~~~---~~p~~~~~~l~~a~~~~~~gd-~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          82 DFAQGAATAKVL---GENEELTKSLVSFNLSMVSQD-YEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHTTSCCCEECC---CSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHhhhhhcc---cCchHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCC
Confidence            443332221111   112223344445555555555 555555555555544433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.23  E-value=1.1e-06  Score=76.11  Aligned_cols=129  Identities=13%  Similarity=0.100  Sum_probs=98.0

Q ss_pred             HHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHh
Q psy875          124 KLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQ  203 (480)
Q Consensus       124 ~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~  203 (480)
                      .-.+..|++++|+..|+++++..|  ....++..+|.+|...|++++|+..|++++++    .|.....+..++.++...
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P--~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l----~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL----FPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhc
Confidence            345678999999999999997764  45588999999999999999999999999998    556667777788887766


Q ss_pred             CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q psy875          204 EKPFELVVSTHEKALDLARQNKDDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKSLEEKL  264 (480)
Q Consensus       204 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~~~~  264 (480)
                      +. .+++...+.+..     ....+.....+...+.++...|++++|...++++.++....
T Consensus        78 ~~-~~~a~~~~~~~~-----~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          78 QA-RKDFAQGAATAK-----VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HH-HHHHTTSCCCEE-----CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             cc-cHHHHHHhhhhh-----cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            66 554433322211     11223445566678899999999999999999988765443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.23  E-value=5.9e-06  Score=63.35  Aligned_cols=110  Identities=18%  Similarity=0.153  Sum_probs=74.3

Q ss_pred             ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh--
Q psy875           51 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKK--  128 (480)
Q Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~--  128 (480)
                      .++++|+++|+++.+. .   .  ..++..+|..   ...++++|+.++++|.+.-    +    ..+...||.+|..  
T Consensus         7 kd~~~A~~~~~kaa~~-g---~--~~a~~~l~~~---~~~~~~~a~~~~~~aa~~g----~----~~a~~~Lg~~y~~g~   69 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-N---E--MFGCLSLVSN---SQINKQKLFQYLSKACELN----S----GNGCRFLGDFYENGK   69 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-T---C--TTHHHHHHTC---TTSCHHHHHHHHHHHHHTT----C----HHHHHHHHHHHHHCS
T ss_pred             cCHHHHHHHHHHHHHC-C---C--hhhhhhhccc---cccCHHHHHHHHhhhhccc----c----hhhhhhHHHhhhhcc
Confidence            5788888888888776 1   1  1233444433   2267888888888876542    1    3456778888775  


Q ss_pred             --cCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhh
Q psy875          129 --HDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----NKQYNLAVDYFNKELRL  181 (480)
Q Consensus       129 --~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~  181 (480)
                        ..++++|+++|+++....    ...+.++||.+|..    ..++++|+.+|++|.+.
T Consensus        70 ~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          70 YVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence              457888888888876432    23567778888876    46788888888887765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.10  E-value=1.8e-05  Score=60.56  Aligned_cols=110  Identities=19%  Similarity=0.108  Sum_probs=83.9

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHHHHHHHHHHHHHh----h
Q psy875           90 KSFEIVQSTHEKALDLARQNKDDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLASCYISLAQTYKD----N  165 (480)
Q Consensus        90 ~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~----~  165 (480)
                      .|+++|+.+|++|.+.-    +.    .+..+++.  ....++++|+++|+++.+..    ...+.+.||.+|..    .
T Consensus         7 kd~~~A~~~~~kaa~~g----~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~   72 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN----EM----FGCLSLVS--NSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVK   72 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT----CT----THHHHHHT--CTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSC
T ss_pred             cCHHHHHHHHHHHHHCC----Ch----hhhhhhcc--ccccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccc
Confidence            58999999999998652    22    23344543  45678999999999887432    34678889999986    5


Q ss_pred             ccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHHHH
Q psy875          166 KQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYEL----QEKPFELVVSTHEKALDL  220 (480)
Q Consensus       166 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~  220 (480)
                      .++++|+++|+++.+.      ..+.+...||.+|..    .++ +.+|..+|++|.+.
T Consensus        73 ~d~~~A~~~~~~aa~~------g~~~a~~~Lg~~y~~G~gv~~d-~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          73 KDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRL  124 (133)
T ss_dssp             CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHhhhhcc------CcchHHHHHHHHHHcCCccCCC-HHHHHHHHHHHHHC
Confidence            6899999999999875      224567889999988    345 99999999998754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.0013  Score=47.95  Aligned_cols=67  Identities=10%  Similarity=0.047  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q psy875          117 TVMRSIKKLYKKHD---NLDSACSELHTVLSSDLCKDLASCYISLAQTYKDNKQYNLAVDYFNKELRLHAR  184 (480)
Q Consensus       117 ~~~~~l~~~y~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~  184 (480)
                      .+-++.|++..+..   +..+|+..+++.+...+. ....++++||..|.++|+|++|..++++++++.+.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45667777777554   567888888888755432 23478889999999999999999999999988443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.0033  Score=45.80  Aligned_cols=65  Identities=8%  Similarity=-0.040  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHH---hhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy875          152 ASCYISLAQTYK---DNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDL  220 (480)
Q Consensus       152 ~~~~~~la~~y~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  220 (480)
                      ..+-++.|.++.   ...+.++|+..+++.++.   ++.....++++||..|+++|+ |++|..++++++++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgd-y~~A~~~~~~~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHcc
Confidence            456677777776   346778999999988765   344456899999999999999 99999999999988

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=91.05  E-value=2.9  Score=33.14  Aligned_cols=61  Identities=8%  Similarity=-0.055  Sum_probs=39.6

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLH-ARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHE  100 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~  100 (480)
                      ...+|.+.-..|+|++.+++.++.+++. ..+..-...-.+.+..+|....|....+.....
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~eERnLLsvayKn~i~~~R~s~R~i~   68 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVL   68 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4567888889999999999999999883 112222222334556665555566666655544

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.01  E-value=3.1  Score=33.34  Aligned_cols=177  Identities=10%  Similarity=0.035  Sum_probs=84.0

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      +..+|.+.-..++|++.+++.+++.+. .......-  .+.+..+|....|....+...+.....-............-|
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~-~~eLt~eE--RnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~~~~~~~i~~y   82 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQ-GAELSNEE--RNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREY   82 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT-CSCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhc-CCCCCHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCcchhhHHHHHH
Confidence            567788888899999999999999887 33332222  234455655555666666555543221111011111111111


Q ss_pred             HHHHHHHHhc-CChHHHHHHHHHHhc-cccccc-HHHHHHHHHHHHHhh----------ccHHHHHHHHHHHHhhhhc--
Q psy875          120 RSIKKLYKKH-DNLDSACSELHTVLS-SDLCKD-LASCYISLAQTYKDN----------KQYNLAVDYFNKELRLHAR--  184 (480)
Q Consensus       120 ~~l~~~y~~~-~~~~~A~~~~~~~l~-~~~~~~-~~~~~~~la~~y~~~----------~~~~~A~~~~~~al~~~~~--  184 (480)
                      ..  .+-..+ .--.+.+......+- ....+. .+..+-..|..|...          .--+.|...|++|+++...  
T Consensus        83 k~--kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L  160 (230)
T d2o02a1          83 RE--KIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEM  160 (230)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HH--HHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            10  000000 001112222222110 111111 111222234443322          1223677888888776543  


Q ss_pred             --CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          185 --NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       185 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                        .+|.......|.+..++..-++.++|....++|+..+
T Consensus       161 ~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~a  199 (230)
T d2o02a1         161 QPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEA  199 (230)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              3455555556666666554333888888888877654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=88.51  E-value=5.1  Score=32.16  Aligned_cols=181  Identities=9%  Similarity=0.026  Sum_probs=88.7

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy875           40 YISLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDDKLIRTVM  119 (480)
Q Consensus        40 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~~~~~~~~  119 (480)
                      +..+|.+.-..++|++.+.+..++++. ..+..-...-.+.+..+|....|....+...+.....-....+.......+-
T Consensus         7 lv~~AklaeqaeRy~dm~~~mk~v~~~-~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~~~~i~   85 (236)
T d1o9da_           7 NVYMAKLAEQAERYEEMVEFMEKVSNS-LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIR   85 (236)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT-CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChHHHHHHH
Confidence            566778888889999999999999886 2221212222244555655555655556555543322222222221111110


Q ss_pred             HHHHHHHHhcC-ChHHHHHHHHHHh-ccccccc-HHHHHHHHHHHHHhh----------ccHHHHHHHHHHHHhhhhc--
Q psy875          120 RSIKKLYKKHD-NLDSACSELHTVL-SSDLCKD-LASCYISLAQTYKDN----------KQYNLAVDYFNKELRLHAR--  184 (480)
Q Consensus       120 ~~l~~~y~~~~-~~~~A~~~~~~~l-~~~~~~~-~~~~~~~la~~y~~~----------~~~~~A~~~~~~al~~~~~--  184 (480)
                      .-.-.+-..+. --.+.+......+ .....+. .+..+-..|..|...          .--+.|...|++|+++...  
T Consensus        86 ~yk~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l  165 (236)
T d1o9da_          86 EYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTEL  165 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            00000000000 0112222222221 1111111 111222224433321          1245678888888877543  


Q ss_pred             --CcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy875          185 --NFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLA  221 (480)
Q Consensus       185 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  221 (480)
                        .+|.......|.+..|+..-++.++|....++|+.-+
T Consensus       166 ~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         166 APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              4566666677777777765333888888888887643

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=88.07  E-value=5.1  Score=31.69  Aligned_cols=176  Identities=11%  Similarity=0.049  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhhh----cCC--CchHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccccccHH
Q psy875           79 GEIGDLYELQEKSFEIVQSTHEKALDLAR----QNK--DDKLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLCKDLA  152 (480)
Q Consensus        79 ~~lg~~y~~~~~~~~~A~~~~~kAl~~~~----~~~--~~~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~~~~~  152 (480)
                      ..+|.+ ..+.|.|++...+.++.+.+..    ...  +...+..+|.+.-.-.      ..|...+..... ...... 
T Consensus         8 ~y~Akl-~eqa~ryddm~~~mK~~v~~~~~~n~eLt~eERnLLsvayKn~i~~~------R~s~R~i~~ie~-k~~~~~-   78 (220)
T d2o8pa1           8 KYRAQV-FEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDY------RTMTSQVLQEQT-KQLNND-   78 (220)
T ss_dssp             HHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-HSCSCH-
T ss_pred             HHHHHH-HHHHccHHHHHHHHHHHHhhhcccCccCCHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHH-hhccch-
Confidence            346788 5666999999999999998753    111  1234444555443322      233333322111 111110 


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhhhc----CcHHHHHHHHHHHHHHH-----HhCCchHHHHHHHHHHHHHHHH
Q psy875          153 SCYISLAQTYKDNKQYNLAVDYFNKELRLHAR----NFPEAVKTLGEIGDLYE-----LQEKPFELVVSTHEKALDLARQ  223 (480)
Q Consensus       153 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~-----~~~~~~~~A~~~~~~al~~~~~  223 (480)
                       -...+..-|... =-.+=...+...+.+...    ++...+..+.-.|+.|.     ..|. -++|...|++|..++..
T Consensus        79 -~~~~~~~~y~~~-i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~-~~~a~~aY~~A~~ia~~  155 (220)
T d2o8pa1          79 -ELVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCS-LEDSKKIHQDAFTLLCE  155 (220)
T ss_dssp             -HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcch-HHHHHHHHHHHHHHHHh
Confidence             011111111111 111222333333333222    22222223333344442     3566 79999999999998875


Q ss_pred             cC---CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhhcc
Q psy875          224 NK---DDKLIRTVMRSMKKLYKKHDKFTELEQIKTELKS-LEEKLDL  266 (480)
Q Consensus       224 ~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-l~~~~~~  266 (480)
                      .-   ++....-++..-.-.|.-+++.++|.+..+.+.+ ..+.+..
T Consensus       156 ~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~~  202 (220)
T d2o8pa1         156 HPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKE  202 (220)
T ss_dssp             CGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            32   3334555665656667889999999999998854 4444444

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.82  E-value=5.5  Score=31.80  Aligned_cols=172  Identities=10%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccccc-ccHHHH
Q psy875           78 LGEIGDLYELQEKSFEIVQSTHEKALDLARQNKDD--KLIRTVMRSIKKLYKKHDNLDSACSELHTVLSSDLC-KDLASC  154 (480)
Q Consensus        78 ~~~lg~~y~~~~~~~~~A~~~~~kAl~~~~~~~~~--~~~~~~~~~l~~~y~~~~~~~~A~~~~~~~l~~~~~-~~~~~~  154 (480)
                      +..+|.+ ..+.++|++...+.++...........  ..+..+|.+.-..      .-.|...+......... ....  
T Consensus         6 ~v~~Akl-aeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~------rR~s~R~l~~ie~k~~~~~~~~--   76 (230)
T d2o02a1           6 LVQKAKL-AEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGA------RRSSWRVVSSIEQKTEGAEKKQ--   76 (230)
T ss_dssp             HHHHHHH-HHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHC------CH--
T ss_pred             HHHHHHH-HHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHcCcchhh--
Confidence            3456777 666699999999999998775544322  3344455544332      22333333321111110 0000  


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhc-------CcHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHH
Q psy875          155 YISLAQTYKDNKQYNLAVDYFNKELRLHAR-------NFPEAVKTLGEIGDLYELQEK---------PFELVVSTHEKAL  218 (480)
Q Consensus       155 ~~~la~~y~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~l~~~~~~~~~---------~~~~A~~~~~~al  218 (480)
                        .+..-|... =-++=...++..+++...       ++...+..+...|+.|...-.         --+.|...|++|+
T Consensus        77 --~~i~~yk~k-ie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~  153 (230)
T d2o02a1          77 --QMAREYREK-IETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAF  153 (230)
T ss_dssp             --HHHHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHH-HHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence              111111110 011222333333333221       233333444444555543221         0257999999999


Q ss_pred             HHHHH--cCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy875          219 DLARQ--NKDDK-LIRTVMRSMKKLYKKHDKFTELEQIKTELKSLE  261 (480)
Q Consensus       219 ~~~~~--~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~l~  261 (480)
                      .+++.  .+..| ...-++..-.-.|.-+|+.++|.+..+++..-.
T Consensus       154 ~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~a  199 (230)
T d2o02a1         154 EISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEA  199 (230)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            98875  23334 444455555556678899999999999887633

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.22  E-value=4.7  Score=34.45  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCcHHHH-----
Q psy875          157 SLAQTYKDNKQYNLAVDYFNKELRLHARNFPEAVKTLGEIGDLYELQEKPFELVVSTHEKALDLARQNKDDKLIR-----  231 (480)
Q Consensus       157 ~la~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-----  231 (480)
                      .+-..|...|.+++.+.+++.++....    .....+..++.+|.+- + .++-.++++..-    ..-+.+...     
T Consensus       104 ~~v~~ye~~~~~e~Li~~Le~~~~~~~----~~~~~~~~L~~lyak~-~-~~kl~e~l~~~s----~~y~~~k~~~~c~~  173 (336)
T d1b89a_         104 ELINYYQDRGYFEELITMLEAALGLER----AHMGMFTELAILYSKF-K-PQKMREHLELFW----SRVNIPKVLRAAEQ  173 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSTT----CCHHHHHHHHHHHHTT-C-HHHHHHHHHHHS----TTSCHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHcCCc----cchHHHHHHHHHHHHh-C-hHHHHHHHHhcc----ccCCHHHHHHHHHH
Confidence            355566666777777777776654311    1122344555555432 2 233333333210    000111111     


Q ss_pred             -HHHHHHHHHHHHcCChHHHHHHH
Q psy875          232 -TVMRSMKKLYKKHDKFTELEQIK  254 (480)
Q Consensus       232 -~~~~~l~~~~~~~g~~~~A~~~~  254 (480)
                       ..+..+..+|.+.|++++|....
T Consensus       174 ~~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         174 AHLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             TTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCChHHHHHHHHhcCCHHHHHHHH
Confidence             11234666777788887777655

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.41  E-value=1.3  Score=28.40  Aligned_cols=27  Identities=7%  Similarity=-0.068  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy875          115 IRTVMRSIKKLYKKHDNLDSACSELHT  141 (480)
Q Consensus       115 ~~~~~~~l~~~y~~~~~~~~A~~~~~~  141 (480)
                      .+..+...+.-+...|+|++|++++++
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~k   33 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRK   33 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444555555555555555443