Psyllid ID: psy8766

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHccccHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHH
Coil and Loop (DISEMBL)
mtgadlnvldkekrsplllaasrgGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLnekdktgcsplhyasreghIISLENLINlgacinlknnsnesplhlaar
Flexible Loop (DISEMBL)
mtgadlnvldkekrsplllaasrggwktvLTLVRNKANillkdinrrnILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACInlknnsnesplhlaar
Low Complexity Region (SEG)
MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR
Disordered region (IsUnstruct)
****************LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL**************
Disordered Region (DISOPRED)
MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR
Disordered Region (DISEMBL)
MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR
Disordered Region (DISPRO)
*****LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q7Z020	1296	Transient receptor potent	yes	N/A	0.940	0.097	0.639	1e-41
O75762	1119	Transient receptor potent	yes	N/A	0.911	0.109	0.386	3e-17
Q6RI86	1125	Transient receptor potent	yes	N/A	0.911	0.109	0.371	4e-17
Q8BLA8	1125	Transient receptor potent	yes	N/A	0.911	0.109	0.378	9e-17
Q94CT7	446	Probable E3 ubiquitin-pro	yes	N/A	0.977	0.295	0.328	6e-11
Q65XV2	450	E3 ubiquitin-protein liga	no	N/A	0.970	0.291	0.333	6e-10
Q94B55	456	Putative E3 ubiquitin-pro	no	N/A	0.940	0.278	0.305	4e-08
Q5ZLC8	1073	Serine/threonine-protein	no	N/A	0.977	0.123	0.276	5e-08
O15084	1053	Serine/threonine-protein	no	N/A	0.874	0.112	0.295	7e-08
Q5BKI6	318	Ankyrin repeat domain-con	no	N/A	0.881	0.374	0.315	1e-07

>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3

 Score =  167 bits (424), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/133 (63%), Positives = 100/133 (75%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++NGG  + 
Sbjct: 459 GADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMNGG-RLT 517

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +FAE+VA       +    ++ LLNEKD  GCSPLHYASR+GHI SLENLI LGACINLK
Sbjct: 518 DFAEQVANC-----QTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLK 572

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 573 NNNNESPLHFAAR 585

Essential for thermotaxis by sensing environmental temperature. Receptor-activated non-selective cation channel involved in detection of sensations such as temperature. Involved in heat nociception by being activated by warm temperature of about 24-29 degrees Celsius.
Drosophila melanogaster (taxid: 7227)

>sp|O75762|TRPA1_HUMAN Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=2 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 9/132 (6%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G +K
Sbjct: 332 GADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYG-LK 390

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E   +        Q I+ L+ ++D  GC+PLHYA R+G   S+ NL+     I+ K
Sbjct: 391 NLRPEFMQM--------QQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSK 442

Query: 123 NNSNESPLHLAA 134
           +   +SPLH AA
Sbjct: 443 SKDKKSPLHFAA 454

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Homo sapiens (taxid: 9606)

>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 9/132 (6%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G ++
Sbjct: 333 GADINSTDSEGRSPLILATASASWNIVNLLLSKGAKVDIKDHLGRNFLHLTVQQPYG-LR 391

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E   +        Q I+ L+ ++D  GC+PLHYA R+G  +S+ NL+     ++ K
Sbjct: 392 NLRPEFLQM--------QHIKELVMDEDNDGCTPLHYACRQGAPVSVNNLLRFNVSVHSK 443

Query: 123 NNSNESPLHLAA 134
           +   +SPLH AA
Sbjct: 444 SKDKKSPLHFAA 455

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 9/132 (6%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G ++
Sbjct: 333 GADINSTDSEGRSPLILATASASWNIVNLLLCKGAKVDIKDHLGRNFLHLTVQQPYG-LR 391

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E   +        Q I+ L+ ++D  GC+PLHYA R+G  +S+ NL+     I+ K
Sbjct: 392 NLRPEFMQM--------QHIKELVMDEDNDGCTPLHYACRQGVPVSVNNLLGFNVSIHSK 443

Query: 123 NNSNESPLHLAA 134
           +   +SPLH AA
Sbjct: 444 SKDKKSPLHFAA 455

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Mus musculus (taxid: 10090)

>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica GN=XBOS31 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 4   ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR-RNILHLLVLNGGGHIK 62
            D++VL ++K++PL++AA RG  + V+ L+R  AN+L  D  R R  LH     G     
Sbjct: 71  GDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHHAAYYGHAECL 130

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +     AA   G   AS G    +N +D+ G +PLH A+R      +  L++ GA ++  
Sbjct: 131 QAILGAAAQAQGPVAASWGFARFVNVRDERGATPLHLAARHARASCVRLLLDKGAIVSAP 190

Query: 123 NN----SNESPLHLAAR 135
                    + LHLAAR
Sbjct: 191 TAVYGFPGSTALHLAAR 207

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica GN=XB3 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHI 61
           GA  + +++ K++PL+LAA  G    VL L++  ANIL+ D ++ R  LH       GH+
Sbjct: 70  GAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHHAAYY--GHV 127

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                 +AA        S G    +N +D  G +PLH A+R+G    ++ L+  GA ++ 
Sbjct: 128 DCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSA 187

Query: 122 KNNSNESP----LHLAAR 135
              S   P    LHLAAR
Sbjct: 188 LTGSYGFPGSTSLHLAAR 205

E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 7   NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFA 65
           ++L++ K++PL+LAA  G    V  L    ANIL+ D +NRR  LH       GH     
Sbjct: 73  DLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYAAYY--GHANCVQ 130

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI----NL 121
             ++A          G    +N +D  G +PLH A+R+     +  L++ G+ +    ++
Sbjct: 131 AILSAAQSSPVAVHWGYARFVNIRDDKGATPLHLAARQRRPECVNVLLDSGSLVCASTSV 190

Query: 122 KNNSNESPLHLAAR 135
             +   +PLHLAAR
Sbjct: 191 YGSPGSTPLHLAAR 204

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 20/152 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG---- 58
           GA L+  DK+ R P+  AA  G  + +  LV   A+++ KD     +LH    +G     
Sbjct: 163 GASLSTCDKKDRQPIHWAAFLGHLEVLKLLVARGADVMCKDKKGYTLLHTAAASGQIEVV 222

Query: 59  GHIKEFAEEV------------AAVFLGEGEASQGIQNL---LNEKDKTGCSPLHYASRE 103
            H+     E+             A ++G+   +  + N    +N+ ++ G +PLH+A+  
Sbjct: 223 RHLLRLGVEIDEPNSFGNTALHIACYMGQDAVANELVNYGANVNQPNEKGFTPLHFAAVS 282

Query: 104 GH-IISLENLINLGACINLKNNSNESPLHLAA 134
            +  + LE L+N GA +N ++   +SPLH+AA
Sbjct: 283 TNGALCLELLVNNGADVNFQSKEGKSPLHMAA 314

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 14/132 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA++N  DK+ R  +  AA  G  + V  LV + A +  KD      LH    +G   + 
Sbjct: 163 GANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVV 222

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           ++  ++            G+   +NE +  G +PLH A   G  + +  LI+ GA +N K
Sbjct: 223 KYLLDL------------GVD--MNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQK 268

Query: 123 NNSNESPLHLAA 134
           N    +PLH AA
Sbjct: 269 NEKGFTPLHFAA 280

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q5BKI6|ANKR1_XENTR Ankyrin repeat domain-containing protein 1 OS=Xenopus tropicalis GN=ankrd1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G D N  D+ KR+ L  A S G    V  L+   ANI  KD+     LH      GG + 
Sbjct: 142 GGDPNTCDEYKRTALHRACSEGHTDMVEKLIEAGANIEFKDMLESTALHWTC--RGGSV- 198

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E   + L +G A       +N +DK   +PLH A R GH    E+LI   A ++ +
Sbjct: 199 ----ETLKLLLNKGAA-------INARDKLLSTPLHVAVRTGHYECAEHLIACEADLHAR 247

Query: 123 NNSNESPLHLAAR 135
           +   ++P+H   R
Sbjct: 248 DREGDTPMHDGVR 260

May act as a nuclear transcription factor that negatively regulates the expression of cardiac genes.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
157123155	894	hypothetical protein AaeL_AAEL009419 [Ae	0.940	0.142	0.676	7e-45
170032246	1345	conserved hypothetical protein [Culex qu	0.940	0.094	0.654	3e-43
242023855	1175	conserved hypothetical protein [Pediculu	0.940	0.108	0.684	4e-43
158293029	1230	AGAP004863-PA [Anopheles gambiae str. PE	0.940	0.103	0.661	2e-42
186694312	1248	TRPA1 channel protein [Anopheles gambiae	0.940	0.101	0.661	2e-42
270004805	1317	hypothetical protein TcasGA2_TC002449 [T	0.940	0.096	0.654	4e-42
198464091	1137	GA28660 [Drosophila pseudoobscura pseudo	0.940	0.111	0.646	9e-41
357622662	1195	hypothetical protein KGM_18654 [Danaus p	0.933	0.105	0.646	1e-40
195428457	1237	GK17464 [Drosophila willistoni] gi|19415	0.933	0.101	0.646	3e-40
195326149	1274	GM24910 [Drosophila sechellia] gi|194118	0.940	0.099	0.639	5e-40

>gi|157123155|ref|XP_001660034.1| hypothetical protein AaeL_AAEL009419 [Aedes aegypti] gi|108874473|gb|EAT38698.1| AAEL009419-PA, partial [Aedes aegypti]

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 90/133 (67%), Positives = 108/133 (81%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N LDKE RSPLLL+ASRGGW+TV+ L+R  ANI LKD+N RN+LHL+++NGG  + 
Sbjct: 51  GADINALDKENRSPLLLSASRGGWRTVMVLIRLGANISLKDVNSRNVLHLVIMNGG-RLD 109

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           EFA+EV+       ++   +  LLNEKD+TGCSPLHYASREGHI SLENLI LGACINLK
Sbjct: 110 EFAKEVSCT-----QSETYLLLLLNEKDETGCSPLHYASREGHIRSLENLIRLGACINLK 164

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 165 NNNNESPLHFAAR 177

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032246|ref|XP_001843993.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872109|gb|EDS35492.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/133 (65%), Positives = 107/133 (80%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N LDKE RSPLLL+ASR GW+TV+ L+R  ANI LKD+N RN+LHL+++NGG  + 
Sbjct: 505 GADINALDKENRSPLLLSASRAGWRTVMILIRLGANIELKDVNSRNVLHLVIMNGG-RLD 563

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           EFA++V+       ++ + +  L+NEKD TGCSPLHYASREGHI SLENLI LGACINLK
Sbjct: 564 EFAKQVSTT-----QSEKYLLQLMNEKDDTGCSPLHYASREGHIRSLENLIQLGACINLK 618

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 619 NNNNESPLHFAAR 631

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023855|ref|XP_002432346.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517769|gb|EEB19608.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/133 (68%), Positives = 109/133 (81%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA++N LDKE RSPLLLAASR GW+TVLTL+R KANILLKD + RNIL L+V+NGG  ++
Sbjct: 354 GAEINPLDKENRSPLLLAASRAGWRTVLTLIRLKANILLKDSSYRNILSLVVMNGG-RLE 412

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +FA+EV  V     ++ + +  LLNEKD +GCSPLHYASREGHI SLE+LI LGACINLK
Sbjct: 413 DFAQEVLKV-----QSKKDLLLLLNEKDISGCSPLHYASREGHIKSLESLIKLGACINLK 467

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 468 NNNNESPLHFAAR 480

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293029|ref|XP_314325.4| AGAP004863-PA [Anopheles gambiae str. PEST] gi|157016910|gb|EAA09726.4| AGAP004863-PA [Anopheles gambiae str. PEST]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 105/133 (78%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +DKEKRSPLLL++SRGGW+TV+ L+R  ANI LKD N RN+LHL+++NGG  + 
Sbjct: 340 GADINAMDKEKRSPLLLSSSRGGWRTVMALIRLGANISLKDANSRNVLHLVIMNGGC-LD 398

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           EFA+EV        ++   +  LLNEKD  GCSPLHYASREGHI SLENLI LGACINLK
Sbjct: 399 EFAKEVC-----RTQSEIYLLQLLNEKDDAGCSPLHYASREGHIRSLENLIRLGACINLK 453

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 454 NNNNESPLHFAAR 466

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|186694312|gb|ACC86138.1| TRPA1 channel protein [Anopheles gambiae]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 105/133 (78%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +DKEKRSPLLL++SRGGW+TV+ L+R  ANI LKD N RN+LHL+++NGG  + 
Sbjct: 394 GADINAMDKEKRSPLLLSSSRGGWRTVMALIRLGANISLKDANSRNVLHLVIMNGGC-LD 452

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           EFA+EV        ++   +  LLNEKD  GCSPLHYASREGHI SLENLI LGACINLK
Sbjct: 453 EFAKEVC-----RTQSEIYLLQLLNEKDDAGCSPLHYASREGHIRSLENLIRLGACINLK 507

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 508 NNNNESPLHFAAR 520

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004805|gb|EFA01253.1| hypothetical protein TcasGA2_TC002449 [Tribolium castaneum]

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/133 (65%), Positives = 106/133 (79%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +DKEKRSPLLLAA RGGW+TV  L+R  A+I +KD+NRRN+LHL+V+NGG  ++
Sbjct: 501 GADINPMDKEKRSPLLLAALRGGWRTVHVLIRLGADINVKDVNRRNVLHLVVMNGG-RLE 559

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +FA EV+     + ++   +  LLNEKD  GCSPLHYASREGHI SLENLI LGA INLK
Sbjct: 560 QFASEVS-----KAKSQTSLLQLLNEKDINGCSPLHYASREGHIRSLENLIRLGATINLK 614

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 615 NNNNESPLHFAAR 627

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198464091|ref|XP_002135630.1| GA28660 [Drosophila pseudoobscura pseudoobscura] gi|198151534|gb|EDY74257.1| GA28660 [Drosophila pseudoobscura pseudoobscura]

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 86/133 (64%), Positives = 101/133 (75%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++NGG  + 
Sbjct: 360 GADINALDKEHRSPLLLAASRSGWKTVHLLIRLGAGISVKDAAARNVLHFVIMNGG-RLT 418

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +FAE+VA       + +  +Q LLNEKD  GCSPLHYASR+GHI SLENLI LGACINLK
Sbjct: 419 DFAEQVANC-----QTNNQLQLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLK 473

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 474 NNNNESPLHFAAR 486

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622662|gb|EHJ74088.1| hypothetical protein KGM_18654 [Danaus plexippus]

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/133 (64%), Positives = 101/133 (75%), Gaps = 7/133 (5%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G+DLN LDKEKRSPLLL+ASRGGW+TV T +   AN+ LKDIN RN+LH +V+NGG  ++
Sbjct: 340 GSDLNPLDKEKRSPLLLSASRGGWRTVHTFILLGANMELKDINSRNVLHHVVMNGG-RLE 398

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +FA         +    + +  LLNEKD  GCSPLHYASREGHI SLENLI LGACINLK
Sbjct: 399 DFATTC------KNRCEKSLSQLLNEKDNNGCSPLHYASREGHIRSLENLIKLGACINLK 452

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 453 NNNNESPLHFAAR 465

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428457|ref|XP_002062289.1| GK17464 [Drosophila willistoni] gi|194158374|gb|EDW73275.1| GK17464 [Drosophila willistoni]

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/133 (64%), Positives = 101/133 (75%), Gaps = 7/133 (5%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++NGG  + 
Sbjct: 365 GADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMNGG-RLT 423

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +FAE+VA         +Q ++ LLNEKD  GCSPLHYASR+GHI SLENLI LGACINLK
Sbjct: 424 DFAEQVAKC------QTQELKLLLNEKDNMGCSPLHYASRDGHIRSLENLIRLGACINLK 477

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 478 NNNNESPLHFAAR 490

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326149|ref|XP_002029792.1| GM24910 [Drosophila sechellia] gi|194118735|gb|EDW40778.1| GM24910 [Drosophila sechellia]

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/133 (63%), Positives = 100/133 (75%), Gaps = 6/133 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++NGG  + 
Sbjct: 380 GADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMNGG-RLT 438

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +FAE+VA       +    ++ LLNEKD  GCSPLHYASR+GHI SLENLI LGACINLK
Sbjct: 439 DFAEQVANC-----QTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLK 493

Query: 123 NNSNESPLHLAAR 135
           NN+NESPLH AAR
Sbjct: 494 NNNNESPLHFAAR 506

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
FB|FBgn0035934	1296	TrpA1 "Transient receptor pote	0.940	0.097	0.639	2.2e-37
UNIPROTKB|E1C7Y7	1074	TRPA1 "Uncharacterized protein	0.918	0.115	0.443	5.2e-20
UNIPROTKB|E1BZK9	1075	TRPA1 "Uncharacterized protein	0.918	0.115	0.443	5.2e-20
UNIPROTKB|G5E522	1126	TRPA1 "Uncharacterized protein	0.911	0.109	0.416	4.7e-18
UNIPROTKB|I3LEM4	1089	I3LEM4 "Uncharacterized protei	0.911	0.112	0.401	8.5e-17
UNIPROTKB|F1RWI1	1121	TRPA1 "Uncharacterized protein	0.911	0.109	0.401	8.8e-17
UNIPROTKB|F1Q2M0	1117	TRPA1 "Uncharacterized protein	0.911	0.110	0.393	1.4e-16
RGD|1303284	1125	Trpa1 "transient receptor pote	0.911	0.109	0.386	2.4e-16
UNIPROTKB|H0YAW0	916	TRPA1 "Transient receptor pote	0.911	0.134	0.393	2.9e-16
UNIPROTKB|O75762	1119	TRPA1 "Transient receptor pote	0.911	0.109	0.393	3.9e-16

FB|FBgn0035934 TrpA1 "Transient receptor potential A1" [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 2.2e-37, P = 2.2e-37
 Identities = 85/133 (63%), Positives = 100/133 (75%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++NGG  + 
Sbjct:   459 GADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMNGG-RLT 517

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
             +FAE+VA       +    ++ LLNEKD  GCSPLHYASR+GHI SLENLI LGACINLK
Sbjct:   518 DFAEQVANC-----QTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLK 572

Query:   123 NNSNESPLHLAAR 135
             NN+NESPLH AAR
Sbjct:   573 NNNNESPLHFAAR 585

GO:0006816 "calcium ion transport" evidence=ISS

GO:0005262 "calcium channel activity" evidence=ISS

GO:0009266 "response to temperature stimulus" evidence=NAS

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043052 "thermotaxis" evidence=IDA;IMP

GO:0009408 "response to heat" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IDA

GO:0042745 "circadian sleep/wake cycle" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0033038 "bitter taste receptor activity" evidence=IDA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IMP

GO:0040040 "thermosensory behavior" evidence=IMP

GO:0007638 "mechanosensory behavior" evidence=IMP

UNIPROTKB|E1C7Y7 TRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 59/133 (44%), Positives = 81/133 (60%)

Query:     2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
             TGA+++ +D E RSPLLLA S   WK V  L+   AN+ LKD   RN LHL VL  GG +
Sbjct:   336 TGANIDSVDTEGRSPLLLATSCASWKIVNLLLSKGANVSLKDHLGRNFLHLTVLQPGG-L 394

Query:    62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
             +   E+    FL      + I+NL+ ++D  GC+PLHYA R+G  +S+ NL++L   I  
Sbjct:   395 QHLNEK----FL----QMEHIKNLVVDEDNEGCTPLHYACRQGVALSVNNLLSLNVSIYS 446

Query:   122 KNNSNESPLHLAA 134
             K+   +SPLH AA
Sbjct:   447 KSRDKKSPLHFAA 459

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BZK9 TRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 59/133 (44%), Positives = 81/133 (60%)

Query:     2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
             TGA+++ +D E RSPLLLA S   WK V  L+   AN+ LKD   RN LHL VL  GG +
Sbjct:   336 TGANIDSVDTEGRSPLLLATSCASWKIVNLLLSKGANVSLKDHLGRNFLHLTVLQPGG-L 394

Query:    62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
             +   E+    FL      + I+NL+ ++D  GC+PLHYA R+G  +S+ NL++L   I  
Sbjct:   395 QHLNEK----FL----QMEHIKNLVVDEDNEGCTPLHYACRQGVALSVNNLLSLNVSIYS 446

Query:   122 KNNSNESPLHLAA 134
             K+   +SPLH AA
Sbjct:   447 KSRDKKSPLHFAA 459

GO:0016021 "integral to membrane" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

UNIPROTKB|G5E522 TRPA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 232 (86.7 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 55/132 (41%), Positives = 75/132 (56%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD+++ D E RSPLLLA +   W TV  L+   A + +KD   RN LHL V    G +K
Sbjct:   336 GADIDITDSEGRSPLLLATASASWNTVNLLLSKGARVDIKDNLGRNFLHLTVQQPYG-LK 394

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                 E    FL      Q I+ L+ ++D  GC+PLHYA R+G  +S+ NL+N    I+ K
Sbjct:   395 NLHPE----FL----QMQHIKELVMDEDNDGCTPLHYACRQGVPVSVNNLLNFNVSIHSK 446

Query:   123 NNSNESPLHLAA 134
             +   +SPLH AA
Sbjct:   447 SKDKKSPLHFAA 458

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LEM4 I3LEM4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 53/132 (40%), Positives = 73/132 (55%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD++  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G +K
Sbjct:   302 GADIDSTDSEGRSPLILATASASWNIVNLLLSKGARVGIKDHLGRNFLHLTVQQPYG-LK 360

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                 E    FL      Q I+ L+ ++D  GC+PLHYA R+G  +S+ NL++    I+ K
Sbjct:   361 NLRPE----FL----QMQHIKELVMDEDNDGCTPLHYACRQGVPVSVNNLLDFNVSIHSK 412

Query:   123 NNSNESPLHLAA 134
             N   +SPLH AA
Sbjct:   413 NKDKKSPLHFAA 424

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

UNIPROTKB|F1RWI1 TRPA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 8.8e-17, P = 8.8e-17
 Identities = 53/132 (40%), Positives = 73/132 (55%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD++  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G +K
Sbjct:   334 GADIDSTDSEGRSPLILATASASWNIVNLLLSKGARVGIKDHLGRNFLHLTVQQPYG-LK 392

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                 E    FL      Q I+ L+ ++D  GC+PLHYA R+G  +S+ NL++    I+ K
Sbjct:   393 NLRPE----FL----QMQHIKELVMDEDNDGCTPLHYACRQGVPVSVNNLLDFNVSIHSK 444

Query:   123 NNSNESPLHLAA 134
             N   +SPLH AA
Sbjct:   445 NKDKKSPLHFAA 456

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

UNIPROTKB|F1Q2M0 TRPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 52/132 (39%), Positives = 72/132 (54%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD+N  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G +K
Sbjct:   333 GADINSTDSEGRSPLILATASASWNIVNLLLSKGARVDIKDNLGRNFLHLTVQQPYG-LK 391

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                 E    F+      Q I+NL+ ++D  GC+PLHYA R G  +S+ NL++    +  K
Sbjct:   392 NLRPE----FM----QMQHIKNLVMDEDDDGCTPLHYACRHGIPVSVNNLLDFNVSLRSK 443

Query:   123 NNSNESPLHLAA 134
             +   +SPLH AA
Sbjct:   444 SKDKKSPLHFAA 455

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

RGD|1303284 Trpa1 "transient receptor potential cation channel, subfamily A, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 51/132 (38%), Positives = 72/132 (54%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD+N  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G ++
Sbjct:   333 GADINSTDSEGRSPLILATASASWNIVNLLLSKGAKVDIKDHLGRNFLHLTVQQPYG-LR 391

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                 E    FL      Q I+ L+ ++D  GC+PLHYA R+G  +S+ NL+     ++ K
Sbjct:   392 NLRPE----FL----QMQHIKELVMDEDNDGCTPLHYACRQGAPVSVNNLLRFNVSVHSK 443

Query:   123 NNSNESPLHLAA 134
             +   +SPLH AA
Sbjct:   444 SKDKKSPLHFAA 455

GO:0005216 "ion channel activity" evidence=ISO

GO:0005262 "calcium channel activity" evidence=IEA;ISO

GO:0006811 "ion transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0009409 "response to cold" evidence=IEA;ISO

GO:0015267 "channel activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA;ISO

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0042493 "response to drug" evidence=IEA;ISO

GO:0042542 "response to hydrogen peroxide" evidence=IEA;ISO

GO:0048265 "response to pain" evidence=IEA;ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0050955 "thermoception" evidence=IEA;ISO

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA;ISO

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA;ISO

GO:0055085 "transmembrane transport" evidence=ISO

GO:0070588 "calcium ion transmembrane transport" evidence=ISO

UNIPROTKB|H0YAW0 TRPA1 "Transient receptor potential cation channel subfamily A member 1" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 52/132 (39%), Positives = 72/132 (54%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD+N +D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G +K
Sbjct:   184 GADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYG-LK 242

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                 E    F+      Q I+ L+ ++D  GC+PLHYA R+G   S+ NL+     I+ K
Sbjct:   243 NLRPE----FM----QMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSK 294

Query:   123 NNSNESPLHLAA 134
             +   +SPLH AA
Sbjct:   295 SKDKKSPLHFAA 306

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O75762 TRPA1 "Transient receptor potential cation channel subfamily A member 1" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 52/132 (39%), Positives = 72/132 (54%)

Query:     3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             GAD+N +D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G +K
Sbjct:   332 GADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYG-LK 390

Query:    63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                 E    F+      Q I+ L+ ++D  GC+PLHYA R+G   S+ NL+     I+ K
Sbjct:   391 NLRPE----FM----QMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSK 442

Query:   123 NNSNESPLHLAA 134
             +   +SPLH AA
Sbjct:   443 SKDKKSPLHFAA 454

GO:0005262 "calcium channel activity" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

GO:0015267 "channel activity" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Z020	TRPA1_DROME	No assigned EC number	0.6390	0.9407	0.0979	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-20
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.001
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.0 bits (195), Expect = 5e-20
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)

Query: 7   NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
           N  D++ R+PL LAAS G  + V  L+ N A++  KD + R  LHL   NG         
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-------L 53

Query: 67  EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN 126
           E+  + L +G         +N +DK G +PLH A+R G++  ++ L+  GA +N ++   
Sbjct: 54  EIVKLLLEKG-------ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106

Query: 127 ESPLHLAAR 135
            +PLHLAA+
Sbjct: 107 RTPLHLAAK 115

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 54.7 bits (132), Expect = 9e-10
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASR--GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
           GA++N  D    +PLL A S+    +  V  L+ N AN+ +K+ +  N+LHL +      
Sbjct: 96  GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL--ESNK 153

Query: 61  IKEFAEEVAAVFLGEG---EASQGIQNLL------NEKDKTGCSPLHYASREGHIISLEN 111
           I     ++  + + +G    A   +  LL      N KD  G +PLHYA    +   ++ 
Sbjct: 154 IDL---KILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKY 210

Query: 112 LINLGACINLKNNSNESPLHLAAR 135
           L++LGA  NL N   ++PLH+A  
Sbjct: 211 LLDLGANPNLVNKYGDTPLHIAIL 234

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 2   TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
            G D+N+ D E ++ L  A  +G  +++  L    A++ ++D N    +H+        I
Sbjct: 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA-------I 165

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
           K    ++  + L +G          N KD  G SPLH A+  G    ++ LI+ G  I  
Sbjct: 166 KHNFFDIIKLLLEKGA-------YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN 218

Query: 122 KNNSNESPLHLA 133
           K  +  +PLH A
Sbjct: 219 KCKNGFTPLHNA 230

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
           L   D + R PL  AAS+G  K V  L+ + A++  KD +    LHL  LNG  +  E  
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG--NPPEGN 123

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
            EVA + L  G        + N +D+ G +PLH+A+  G    +E L+  GA  N +N+ 
Sbjct: 124 IEVAKLLLEAGADLD----VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179

Query: 126 NESPLHLAAR 135
             + L  AA+
Sbjct: 180 GVTALDPAAK 189

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 94  CSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            + LH A+R G++  ++ L+  GA +N K+    + LHLAAR
Sbjct: 29  DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR 70

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
           M     +   K+   PL LA        V  L+ N A+I     N    LH L      +
Sbjct: 23  MEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI--KY 80

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASRE--GHIISLENLINLGAC 118
                +E+  + L  G         +N  D  G +PL YA  +       +E L++ GA 
Sbjct: 81  NLTDVKEIVKLLLEYGA-------NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN 133

Query: 119 INLKNNSNESPLHLAAR 135
           +N+KN+  E+ LHL   
Sbjct: 134 VNIKNSDGENLLHLYLE 150

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 3   GADLNVLDKEKRSPL--LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
           GAD+N LD    +PL  LL +     + +  L+   A++   D   R++LH        H
Sbjct: 142 GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH--------H 193

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI--ISLENLINLGAC 118
             +  +  A +                  D  G +PLH  +         +  L+  G  
Sbjct: 194 HLQSFKPRARIV----RELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS 249

Query: 119 INLKNNSNESPLHLAA 134
           IN +N   ++PLH AA
Sbjct: 250 INARNRYGQTPLHYAA 265

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.2 bits (97), Expect = 5e-06
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 83  QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
              LN  D  G +PLH A++ G +  ++ L+  G  +NL+++   + L LA
Sbjct: 6   PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 16/107 (14%)

Query: 17  LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
           L LAA  G  + V  L+   A++ L   +    LHL   NG  ++     E+  + L  G
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG--DTDTALHLAARNG--NL-----EIVKLLLEHG 51

Query: 77  EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
                    +N KDK G + LH A+R G++  ++ L+  GA INLK+
Sbjct: 52  AD-------VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN---ILLKDINRRNILHLLVLNGGG 59
           GAD+N ++ +   PLL A   G    +  L+ N  +   + +  I +  I  +L      
Sbjct: 58  GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDV 117

Query: 60  HIKEFAEEVAAVFLGEGEASQGIQNLL------NEKDKTGCSPLHYASREGHIISLENLI 113
           +IK+   +    +  +    + I+ L       N +D  GC P+H A +      ++ L+
Sbjct: 118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL 177

Query: 114 NLGACINLKNNSNESPLHLAAR 135
             GA  N+K+N+ ESPLH AA 
Sbjct: 178 EKGAYANVKDNNGESPLHNAAE 199

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 6e-05
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNN 124
           G +PLH A+R GH+  ++ L+  GA +N ++ 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 9e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 95  SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           + LH A+  G +  ++ L+  G  IN  +    + LH+AA 
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 22/155 (14%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKDINRRNILHL------- 52
           M GAD+N  D+   +PL  A++    K  V+TL+   AN+  +D   +  +H        
Sbjct: 329 MLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNV 388

Query: 53  ----LVLNGGGHIKEFAEEVAAVF---LGEGEASQGIQNLL------NEKDKTGCSPLHY 99
                +L+ G  I+  ++++       L        ++ L+      N K+K   +PLHY
Sbjct: 389 VIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHY 448

Query: 100 ASREG-HIISLENLINLGACINLKNNSNESPLHLA 133
           A ++   +  +E L++ GA +N  N  N+ PL +A
Sbjct: 449 ACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA++N+ DK   SPL  A        V  L+ N A+   +D      LH+ V    G+ K
Sbjct: 191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV----GYCK 246

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           ++  ++  + L  G      ++ +      G + LH + +    + L  L+  GA IN  
Sbjct: 247 DY--DILKLLLEHG-VDVNAKSYI-----LGLTALHSSIKSERKLKL--LLEYGADINSL 296

Query: 123 NNSNESPLHLAAR 135
           N+   +PL  A +
Sbjct: 297 NSYKLTPLSSAVK 309

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA  NV D    SPL  AA  G +  +  L+ +  +I+ K  N    LH  +++      
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR---- 235

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA-SREGHIISLENLINLGACINL 121
                 +A+ L    AS      +N++D  G +PLH+A +    I  ++ L+   A I++
Sbjct: 236 ------SAIELLINNAS------INDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI 283

Query: 122 KNNSNESPLHLAAR 135
           K+N  E+P+  A +
Sbjct: 284 KDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 16/149 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV-LNGGGHI 61
           GAD+N  D    +P+  AA RG  K V  L+   A++ +  ++  ++L   V       I
Sbjct: 168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTI 227

Query: 62  KEFAEEVAAVFLGEGEASQGIQNL--------------LNEKDKTGCSPLHYASREGHII 107
           K   +  + +   +    + I+N               +N  D    +PLH+AS+   + 
Sbjct: 228 KAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLS 287

Query: 108 SL-ENLINLGACINLKNNSNESPLHLAAR 135
            L   L+  GA +N KN   E+PL+L A+
Sbjct: 288 RLVPKLLERGADVNAKNIKGETPLYLMAK 316

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNIL-------HLLVL 55
             D ++ D + R+PL +AAS+G    VL L+++  N+ ++D N    L       H  + 
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607

Query: 56  NGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNE----------KDKTGCSPLHYASREGH 105
               H    ++  AA  L    A +     + E          +D  G + L  A  E H
Sbjct: 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH 667

Query: 106 IISLENLINLGACINLKNNSNE-SPLHL 132
           +  +  LI  GA ++  N  ++ SP  L
Sbjct: 668 VDMVRLLIMNGADVDKANTDDDFSPTEL 695

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 97  LHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           LH A++ G++  ++ L+  GA +NL +    + LHLAAR
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR 37

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 86  LNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +N KD+  G + LHYA+        E L++ GA +N+ + +N SPLH A +
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK 210

Length = 477

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG4412|consensus	226		99.98
KOG4412|consensus	226		99.96
KOG0509|consensus	600		99.96
PHA02791	284	ankyrin-like protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
KOG0509|consensus	600		99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
PHA02874	434	ankyrin repeat protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02946	446	ankyin-like protein; Provisional	99.92
PHA03095	471	ankyrin-like protein; Provisional	99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.92
KOG0510|consensus	929		99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.92
KOG0195|consensus	448		99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
KOG0510|consensus	929		99.91
KOG0508|consensus	615		99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.91
KOG0502|consensus	296		99.9
KOG0512|consensus	228		99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
PHA02917	661	ankyrin-like protein; Provisional	99.89
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02917	661	ankyrin-like protein; Provisional	99.88
KOG0505|consensus	527		99.88
KOG0514|consensus	452		99.87
KOG4177|consensus	1143		99.87
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.87
KOG0512|consensus	228		99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
KOG4177|consensus	1143		99.86
PHA02741	169	hypothetical protein; Provisional	99.86
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0508|consensus	615		99.84
PHA02730	672	ankyrin-like protein; Provisional	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.82
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.8
KOG0502|consensus	296		99.8
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.8
PHA02795	437	ankyrin-like protein; Provisional	99.79
KOG0507|consensus	854		99.78
PHA02792	631	ankyrin-like protein; Provisional	99.78
KOG0505|consensus	527		99.78
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.78
KOG0514|consensus	452		99.78
KOG4214|consensus	117		99.74
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.73
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.72
KOG3676|consensus	782		99.68
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.67
KOG0507|consensus	854		99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.67
KOG0195|consensus	448		99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.62
KOG1710|consensus	396		99.62
KOG4214|consensus	117		99.6
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.57
KOG3676|consensus	782		99.56
KOG0515|consensus	752		99.56
KOG0515|consensus	752		99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
KOG1710|consensus	396		99.43
KOG4369|consensus	2131		99.41
PF13606	30	Ank_3: Ankyrin repeat	99.41
KOG4369|consensus	2131		99.39
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.37
KOG0783|consensus	1267		99.36
PF13606	30	Ank_3: Ankyrin repeat	99.3
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.26
KOG0506|consensus	622		99.19
KOG0782|consensus	1004		99.11
KOG0506|consensus	622		99.1
KOG0818|consensus	669		99.07
KOG2384|consensus	223		99.02
KOG0818|consensus	669		98.97
KOG0782|consensus	1004		98.96
KOG0522|consensus	560		98.95
KOG0705|consensus	749		98.84
KOG0705|consensus	749		98.75
KOG3609|consensus	822		98.74
KOG0522|consensus	560		98.72
KOG0783|consensus	1267		98.71
KOG0521|consensus	785		98.5
KOG0520|consensus	975		98.35
KOG0511|consensus	516		98.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	98.16
KOG0521|consensus	785		98.16
KOG2384|consensus	223		98.0
KOG2505|consensus	591		97.98
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.97
KOG2505|consensus	591		97.9
KOG0511|consensus	516		97.89
KOG0520|consensus	975		97.72
KOG3609|consensus	822		96.96
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.74
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.97
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.93
KOG3836|consensus	605		81.0

>KOG4412|consensus

Probab=99.98  E-value=1.2e-32  Score=156.85  Aligned_cols=118  Identities=29%  Similarity=0.367  Sum_probs=104.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHc-CCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      -+..+|.+|..|+||||.||..|+.++|+.|+.+ |++++..+..|.|+||||+..|..++..+++       +.++.  
T Consensus        61 ~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLl-------e~ga~--  131 (226)
T KOG4412|consen   61 PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLL-------EKGAL--  131 (226)
T ss_pred             CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHH-------hcCCC--
Confidence            4677888999999999999999999999999977 9999999999999999999999755554444       44444  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                           ++.+|..|.||||-|+..|..+++++|+..|+.+|..|+.|+||||.|
T Consensus       132 -----i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  132 -----IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             -----CcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence                 788999999999999999999999999999999999999999999987

>KOG4412|consensus

Probab=99.96  E-value=5.1e-30  Score=146.23  Aligned_cols=118  Identities=30%  Similarity=0.380  Sum_probs=106.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .|+|+|..+..|.||||+|+-+|+++++++|+++|+.++.+|..|.||||.|+.-|+.+++++++.       .+..   
T Consensus        95 ~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~-------~~a~---  164 (226)
T KOG4412|consen   95 SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS-------QGAP---  164 (226)
T ss_pred             CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh-------cCCC---
Confidence            489999999999999999999999999999999999999999999999999999998655555544       4433   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..|..|+||||.|..-++.++...|+++|++++..|+.| ||+..|+
T Consensus       165 ----~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  165 ----LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             ----CCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence                78899999999999988899999999999999999999988 9987764

>KOG0509|consensus

Probab=99.96  E-value=1.5e-28  Score=161.90  Aligned_cols=119  Identities=29%  Similarity=0.433  Sum_probs=77.0

Q ss_pred             CCCCccccc-cCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~-~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|+|+|..+ .-+.||||||+++|+..++.+|+++|++|+.+|.+|.+|+|.|+.+++...+-+++....       .  
T Consensus       100 ~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~-------d--  170 (600)
T KOG0509|consen  100 HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA-------D--  170 (600)
T ss_pred             cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcc-------c--
Confidence            466676665 455577777777777777777777777777777777777777777666544444433321       1  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecC-CCCCCcchhcc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN-NSNESPLHLAA  134 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~  134 (135)
                           ++.+|..|.||||+|+++|....+..|+..|+.+..+| ..|.||||+|+
T Consensus       171 -----~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~  220 (600)
T KOG0509|consen  171 -----IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAV  220 (600)
T ss_pred             -----CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHH
Confidence                 56666677777777777766665666666677666665 56677777664

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.3e-27  Score=149.63  Aligned_cols=131  Identities=21%  Similarity=0.137  Sum_probs=78.7

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc-----
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE-----   77 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-----   77 (135)
                      |+++|..+  |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.++++++......+.....     
T Consensus        53 ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~T  130 (284)
T PHA02791         53 GALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKT  130 (284)
T ss_pred             cCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcH
Confidence            44554432  45555555555555555555555555555555555555555555555555554443221100000     


Q ss_pred             ---------chhhhhhhhh----ccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCc-chhccC
Q psy8766          78 ---------ASQGIQNLLN----EKD-KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESP-LHLAAR  135 (135)
Q Consensus        78 ---------~~~~~~~~~~----~~~-~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tp-l~~a~~  135 (135)
                               ....+..++.    ..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|++
T Consensus       131 pL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        131 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID  203 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHH
Confidence                     0000000111    122 247899999999999999999999999999999999987 998863

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=2.6e-27  Score=156.83  Aligned_cols=133  Identities=17%  Similarity=0.182  Sum_probs=85.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCC--CchHHHHHHHHHHHhcC----
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG--GHIKEFAEEVAAVFLGE----   75 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~--~~~~~~~~~~~~~~~~~----   75 (135)
                      +|+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++  .+++++++.........    
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~  140 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEE  140 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCC
Confidence            689999999999999999999999999999999999999999999999999987654  33444444322111100    


Q ss_pred             C---------cchhhhhh------hhhccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          76 G---------EASQGIQN------LLNEKDKTGCSPLHYASREG--HIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        76 ~---------~~~~~~~~------~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +         .....+..      .++..+..|+||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+
T Consensus       141 g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa  216 (446)
T PHA02946        141 GCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC  216 (446)
T ss_pred             CCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            0         00000000      02334455555555554432  245555555555555555555555555554

>KOG0509|consensus

Probab=99.95  E-value=4.5e-28  Score=159.67  Aligned_cols=118  Identities=29%  Similarity=0.370  Sum_probs=108.4

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      |.++|..|++|.|+|||||.+++.+++++|+++|+++|..+ ..+.||||+|++.|+..++.++.+       .|+.   
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq-------hGAd---  137 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ-------HGAD---  137 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH-------cCCC---
Confidence            78999999999999999999999999999999999999988 788899999999998655555554       4444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++.+|..|.+|+|+|+..++.-++-+|+..|++++.+|.+|+|||++|+
T Consensus       138 ----pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  138 ----PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA  186 (600)
T ss_pred             ----CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH
Confidence                8899999999999999999999999999999999999999999999986

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.8e-27  Score=158.38  Aligned_cols=118  Identities=25%  Similarity=0.289  Sum_probs=81.1

Q ss_pred             CCCCccccccC-CChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~-g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|+|+|.++.. |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.++++++...       +..  
T Consensus       156 ~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-------ga~--  226 (477)
T PHA02878        156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN-------GAS--  226 (477)
T ss_pred             cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc-------CCC--
Confidence            58888888888 89999999999999999999999999988888899999999988876666655542       222  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhc-CcHHHHHHHHHcCCCeeecCC-CCCCcchhc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASRE-GHIISLENLINLGACINLKNN-SNESPLHLA  133 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a  133 (135)
                           ++.++..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+|
T Consensus       227 -----in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        227 -----TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             -----CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence                 344455555555555543 345555555555555555443 355555544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.8e-27  Score=156.21  Aligned_cols=119  Identities=29%  Similarity=0.363  Sum_probs=104.3

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .|+++|.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..   
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-------~g~~---  182 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-------KGAY---  182 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-------CCCC---
Confidence            588999999999999999999999999999999999999999999999999999998666555544       3333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|+||||+|+..|+.+++++|++.|++++.++..|.||||.|+
T Consensus       183 ----~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        183 ----ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI  231 (434)
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence                5667888999999999999999999999999998888888888888875

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=9.2e-27  Score=156.29  Aligned_cols=134  Identities=25%  Similarity=0.326  Sum_probs=106.8

Q ss_pred             CCCCccccccCCChHHHHHHHhC---CHHHHHHHHHcCCCccccccCCchHHHHHHHhCC---CchHHHHHHHHHH----
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG---GWKTVLTLVRNKANILLKDINRRNILHLLVLNGG---GHIKEFAEEVAAV----   71 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~~~~~~~~~----   71 (135)
                      +|+|+|.+|..|.||||+|+..+   +.+++++|+++|++++.+|..|.||||+|+..++   .++++++......    
T Consensus        98 ~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~  177 (489)
T PHA02798         98 NGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH  177 (489)
T ss_pred             CCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc
Confidence            69999999999999999999875   6899999999999999999999999999999886   5666666543211    


Q ss_pred             ---------------------------HhcCCcchhh--------------------------h------hhhhhccCCC
Q psy8766          72 ---------------------------FLGEGEASQG--------------------------I------QNLLNEKDKT   92 (135)
Q Consensus        72 ---------------------------~~~~~~~~~~--------------------------~------~~~~~~~~~~   92 (135)
                                                 +++.+.....                          +      ...++.++..
T Consensus       178 ~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~  257 (489)
T PHA02798        178 NNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDEL  257 (489)
T ss_pred             cCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcC
Confidence                                       1111110000                          0      0013557788


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        93 ~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      |+||||+|+..++.+++++|++.|++++.+|..|+|||++|++
T Consensus       258 G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~  300 (489)
T PHA02798        258 GFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFE  300 (489)
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHH
Confidence            9999999999999999999999999999999999999999863

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1e-26  Score=140.67  Aligned_cols=119  Identities=23%  Similarity=0.188  Sum_probs=92.6

Q ss_pred             CCCCccccc-cCCChHHHHHHHh---CCHHHHHHHHHcCCCccccccCCchHHHHHHHh--CCCchHHHHHHHHHHHhcC
Q psy8766           2 TGADLNVLD-KEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLLVLN--GGGHIKEFAEEVAAVFLGE   75 (135)
Q Consensus         2 ~g~~~n~~~-~~g~tpl~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~~~~~~~~~~   75 (135)
                      +|+|+|.++ ..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+..  ++.+       ....++..
T Consensus        75 ~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~-------iv~~Li~~  147 (209)
T PHA02859         75 NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRIN-------VIKLLIDS  147 (209)
T ss_pred             CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHH-------HHHHHHHc
Confidence            578888886 4788888887653   367888888888888888888888888887653  3333       33334444


Q ss_pred             CcchhhhhhhhhccCCCCCcHHHH-HHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          76 GEASQGIQNLLNEKDKTGCSPLHY-ASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~t~l~~-a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +..       ++.++..|.||||. ++..++.+++++|+++|++++.+|..|+||+++|.
T Consensus       148 gad-------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~  200 (209)
T PHA02859        148 GVS-------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK  200 (209)
T ss_pred             CCC-------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            444       67788899999996 56678899999999999999999999999999885

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.4e-26  Score=152.41  Aligned_cols=133  Identities=26%  Similarity=0.334  Sum_probs=103.0

Q ss_pred             CCCCccccccCCChHHHHHHHhC--CHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc--
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG--GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE--   77 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--   77 (135)
                      +|++++..+..|.||||+|+..+  +.+++++|++.|++++.++..|.||||+|+..++.++++++.+..........  
T Consensus       130 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  209 (480)
T PHA03100        130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIET  209 (480)
T ss_pred             cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCC
Confidence            57888888888888888888888  88888888888888888888888888888888887777776653222111000  


Q ss_pred             -----------------c--hhhhhh------hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchh
Q psy8766          78 -----------------A--SQGIQN------LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHL  132 (135)
Q Consensus        78 -----------------~--~~~~~~------~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~  132 (135)
                                       .  ...+..      .++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||+++
T Consensus       210 ~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~  289 (480)
T PHA03100        210 LLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI  289 (480)
T ss_pred             CcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence                             0  011111      145677889999999999999999999999999999999999999999


Q ss_pred             cc
Q psy8766         133 AA  134 (135)
Q Consensus       133 a~  134 (135)
                      |+
T Consensus       290 A~  291 (480)
T PHA03100        290 AI  291 (480)
T ss_pred             HH
Confidence            86

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=4.5e-26  Score=156.74  Aligned_cols=126  Identities=21%  Similarity=0.218  Sum_probs=97.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCC--HHHHHHHHHcCCCccccccCCchHHHHHHH---hCCCchHHHHHH---------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGG--WKTVLTLVRNKANILLKDINRRNILHLLVL---NGGGHIKEFAEE---------   67 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~---~~~~~~~~~~~~---------   67 (135)
                      +|+|+|.+|..|.||||+|+..|+  .+++++|++.|++++.++..|.||||+|+.   .++.++++.+..         
T Consensus       201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~  280 (764)
T PHA02716        201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKN  280 (764)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccccc
Confidence            588999998899999999998885  488999999999999999999999988753   334344443322         


Q ss_pred             ------------------HHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHh--cCcHHHHHHHHHcCCCeeecCCCCC
Q psy8766          68 ------------------VAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASR--EGHIISLENLINLGACINLKNNSNE  127 (135)
Q Consensus        68 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~ll~~g~~~~~~~~~g~  127 (135)
                                        ....+++.+..       ++.++..|+||||+|+.  .++.+++++|+++|++++.+|..|+
T Consensus       281 ~~~~L~~~i~AA~~g~leiVklLLe~GAd-------IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~  353 (764)
T PHA02716        281 IPMILHSYITLARNIDISVVYSFLQPGVK-------LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGN  353 (764)
T ss_pred             chhhhHHHHHHHHcCCHHHHHHHHhCCCc-------eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCC
Confidence                              12223333333       56788899999999764  4678999999999999999999999


Q ss_pred             Ccchhcc
Q psy8766         128 SPLHLAA  134 (135)
Q Consensus       128 tpl~~a~  134 (135)
                      ||||+|+
T Consensus       354 TPLH~A~  360 (764)
T PHA02716        354 TVLHTYL  360 (764)
T ss_pred             CHHHHHH
Confidence            9999864

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=9.1e-26  Score=158.84  Aligned_cols=125  Identities=26%  Similarity=0.341  Sum_probs=99.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH-------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV-------------   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~-------------   68 (135)
                      .|+|+|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++++...             
T Consensus       547 ~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L  626 (823)
T PLN03192        547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLL  626 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHH
Confidence            6899999999999999999999999999999999999999999999999999999998888877542             


Q ss_pred             -----------HHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCC-CCcchhc
Q psy8766          69 -----------AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN-ESPLHLA  133 (135)
Q Consensus        69 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g-~tpl~~a  133 (135)
                                 ...+++.+..       ++..|..|+||||+|+..|+.+++++|+++|++++..+..| .+|+.++
T Consensus       627 ~~Aa~~g~~~~v~~Ll~~Gad-------in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        627 CTAAKRNDLTAMKELLKQGLN-------VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELR  696 (823)
T ss_pred             HHHHHhCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence                       1222223322       45666777777777777777777777777777777777666 6666543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.7e-26  Score=151.37  Aligned_cols=133  Identities=23%  Similarity=0.203  Sum_probs=100.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhc----CCc
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG----EGE   77 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~----~~~   77 (135)
                      +|+++|.++..|.||||+|+..++.+++++|+++|++++..+..+.||||.|+..|+.++++++.........    .+.
T Consensus        24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  103 (413)
T PHA02875         24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM  103 (413)
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC
Confidence            6899999999999999999999999999999999999998888899999999999987777776653221100    000


Q ss_pred             ----------chhhhhh------hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          78 ----------ASQGIQN------LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        78 ----------~~~~~~~------~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                                ....+..      .++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus       104 tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~  176 (413)
T PHA02875        104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAM  176 (413)
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence                      0000000      03445667788888888888888888888888888888888888888875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.8e-26  Score=153.61  Aligned_cols=117  Identities=30%  Similarity=0.294  Sum_probs=101.9

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHh-CCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN-GGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|+++|.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+.. ++.+++++       ++..+..  
T Consensus       190 ~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~-------Ll~~gad--  260 (477)
T PHA02878        190 YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKL-------LLEHGVD--  260 (477)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHH-------HHHcCCC--
Confidence            6899999999999999999999999999999999999999999999999999975 45444444       4444444  


Q ss_pred             hhhhhhhccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          81 GIQNLLNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        81 ~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                           ++..+. .|.||||+|  .++.+++++|+++|++++..|..|.|||++|+
T Consensus       261 -----vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        261 -----VNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             -----CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence                 555554 799999999  56789999999999999999999999999986

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.6e-25  Score=148.57  Aligned_cols=126  Identities=25%  Similarity=0.334  Sum_probs=100.1

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH-------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV-------------   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~-------------   68 (135)
                      .+.++|..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.++++++...             
T Consensus        24 ~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~  103 (434)
T PHA02874         24 KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIE  103 (434)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCC
Confidence            3566788889999999999999999999999999999999999999999999999998888888753             


Q ss_pred             ---HHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          69 ---AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        69 ---~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                         ...++..+..       ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus       104 ~~~i~~ll~~g~d-------~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~  165 (434)
T PHA02874        104 KDMIKTILDCGID-------VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI  165 (434)
T ss_pred             HHHHHHHHHCcCC-------CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence               2222222222       4455667777777777777777777777777777777777777777765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.3e-26  Score=142.40  Aligned_cols=112  Identities=18%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhh
Q psy8766           7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL   86 (135)
Q Consensus         7 n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (135)
                      +.+|.+|.||||+|+..|+.+++++|++.|++++..+  +.||||+|+..++.++++++..       .+..       +
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~-------~Gad-------v   87 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF-------SGMD-------D   87 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHH-------CCCC-------C
Confidence            5678999999999999999999999999999988764  6899999999998666665553       3333       6


Q ss_pred             hccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCC-Ccchhcc
Q psy8766          87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNE-SPLHLAA  134 (135)
Q Consensus        87 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-tpl~~a~  134 (135)
                      +..+..|+||||+|+..++.+++++|+++|++++.++..|+ |||++|+
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa  136 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV  136 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHH
Confidence            77888899999999999999999999999999988888875 8999885

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=2.6e-25  Score=130.66  Aligned_cols=120  Identities=20%  Similarity=0.231  Sum_probs=100.4

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHH------cCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcc
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVR------NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEA   78 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (135)
                      .++.++..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..++..+   ..+....++..+..
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~---~~~ii~~Ll~~gad   89 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQL---AAEIIDHLIELGAD   89 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHH---HHHHHHHHHHcCCC
Confidence            356788999999999999999999999864      368899999999999999999887432   23344444444544


Q ss_pred             hhhhhhhhhccCC-CCCcHHHHHHhcCcHHHHHHHHH-cCCCeeecCCCCCCcchhcc
Q psy8766          79 SQGIQNLLNEKDK-TGCSPLHYASREGHIISLENLIN-LGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        79 ~~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~  134 (135)
                             ++.++. .|+||||+|+..++.+++++|+. .|++++.+|..|+|||++|+
T Consensus        90 -------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~  140 (169)
T PHA02741         90 -------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI  140 (169)
T ss_pred             -------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH
Confidence                   676774 89999999999999999999997 59999999999999999986

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.4e-26  Score=151.73  Aligned_cols=119  Identities=24%  Similarity=0.261  Sum_probs=99.0

Q ss_pred             CCCCccccccCCChHHHHHHHhC---CHHHHHHHHHcCCCccccccCCchHHHHHHHhCC-CchHHHHHHHHHHHhcCCc
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG---GWKTVLTLVRNKANILLKDINRRNILHLLVLNGG-GHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~   77 (135)
                      +|+++|.++..|.||||+|+..+   +.+++++|++.|++++.++..|.||||+|+..++ .++++++       +..+.
T Consensus        36 ~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lL-------l~~ga  108 (471)
T PHA03095         36 AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLL-------IKAGA  108 (471)
T ss_pred             cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHH-------HHcCC
Confidence            68999999999999999999988   8999999999999999999999999999999884 4444444       34444


Q ss_pred             chhhhhhhhhccCCCCCcHHHHHH--hcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          78 ASQGIQNLLNEKDKTGCSPLHYAS--REGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        78 ~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .       ++..+..|+||||+|+  ..++.+++++|+++|++++.+|..|.||||+|+
T Consensus       109 ~-------in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~  160 (471)
T PHA03095        109 D-------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL  160 (471)
T ss_pred             C-------CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            4       6777888889998888  556788888888888888888888888888764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=150.68  Aligned_cols=134  Identities=19%  Similarity=0.264  Sum_probs=99.0

Q ss_pred             CCCCccccccCCChHHHHHHHh---CCHHHHHHHHHcCCCc-cccccCCchHHHHHHHh--CCCchHHHHHHHH------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASR---GGWKTVLTLVRNKANI-LLKDINRRNILHLLVLN--GGGHIKEFAEEVA------   69 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~---~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~~~~~~------   69 (135)
                      +|+|+|.+|..|.||||.|+..   ++.+++++|+++|+++ +.++..|.||||+|+..  ++.++++++.+..      
T Consensus        97 ~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~  176 (494)
T PHA02989         97 FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK  176 (494)
T ss_pred             CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc
Confidence            6888888888888888877665   5678888888888888 78888888888887654  3445555554321      


Q ss_pred             -------------------------HHHhcCCcchhhhh-------------------------------hhhhccCCCC
Q psy8766          70 -------------------------AVFLGEGEASQGIQ-------------------------------NLLNEKDKTG   93 (135)
Q Consensus        70 -------------------------~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~   93 (135)
                                               ..++..+.......                               ..++.++..|
T Consensus       177 ~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G  256 (494)
T PHA02989        177 TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKG  256 (494)
T ss_pred             ccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCC
Confidence                                     12222221110000                               0135667789


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          94 CSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        94 ~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +||||+|+..++.+++++|++.|++++.+|..|+|||++|++
T Consensus       257 ~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~  298 (494)
T PHA02989        257 FNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIK  298 (494)
T ss_pred             CCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999863

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.8e-25  Score=152.59  Aligned_cols=126  Identities=28%  Similarity=0.314  Sum_probs=96.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHH-----------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA-----------   70 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~-----------   70 (135)
                      +|+|+|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.+.....           
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~  246 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLK  246 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999888777654211           


Q ss_pred             -----------HHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcH-HHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          71 -----------VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI-ISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        71 -----------~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                                 .+...+..       ++..+..|+||||+|+..++. +++++|++.|++++.+|..|.||||+|+
T Consensus       247 ai~~~~~~~~~~Ll~~g~~-------vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa  315 (682)
T PHA02876        247 AIRNEDLETSLLLYDAGFS-------VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMA  315 (682)
T ss_pred             HHHcCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence                       11111111       344555677777777776664 4666777777777777777777777665

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=131.24  Aligned_cols=122  Identities=17%  Similarity=0.220  Sum_probs=94.1

Q ss_pred             CCCCccccccCCChHHHHHHHhCCH----HHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGW----KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (135)
                      +|+|++..+.++.+++|.||..|+.    +++++|++.|.+++.+|..|+||||+|+..++.+.+..    ...++..+.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~----i~~Ll~~Ga   84 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMK----IELLVNMGA   84 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHH----HHHHHHcCC
Confidence            5678888888888888989888887    55566777888888888889999999988887554222    233334444


Q ss_pred             chhhhhhhhhccC-CCCCcHHHHHHhcCcHHHHHHHHH-cCCCeeecCCCCCCcchhcc
Q psy8766          78 ASQGIQNLLNEKD-KTGCSPLHYASREGHIISLENLIN-LGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        78 ~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .       ++.++ ..|+||||+|+..++.+++++|+. .|++++.++..|.|||++|+
T Consensus        85 d-------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~  136 (166)
T PHA02743         85 D-------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY  136 (166)
T ss_pred             C-------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH
Confidence            3       56666 478899999999999999998884 78888888888999998875

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6e-25  Score=152.54  Aligned_cols=126  Identities=28%  Similarity=0.376  Sum_probs=88.0

Q ss_pred             CCCCccccccCCChHHHHHHHh-CCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASR-GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV------------   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~------------   68 (135)
                      .|+++|.+|..|.||||+|+.. ++.++++.|++.|++++.+|..|.||||+|+..++.++++++...            
T Consensus       330 ~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~  409 (682)
T PHA02876        330 LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG  409 (682)
T ss_pred             cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCC
Confidence            3566666666666666666553 345556666666666666666666666666666665555555432            


Q ss_pred             ---------------HHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcC-cHHHHHHHHHcCCCeeecCCCCCCcchh
Q psy8766          69 ---------------AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG-HIISLENLINLGACINLKNNSNESPLHL  132 (135)
Q Consensus        69 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~ll~~g~~~~~~~~~g~tpl~~  132 (135)
                                     ...++..+..       ++.++..|+||||+|+..+ +.+++++|++.|++++.+|..|.||+++
T Consensus       410 T~Lh~A~~~~~~~~~vk~Ll~~gad-------in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~  482 (682)
T PHA02876        410 TALHFALCGTNPYMSVKTLIDRGAN-------VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI  482 (682)
T ss_pred             chHHHHHHcCCHHHHHHHHHhCCCC-------CCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence                           2223333333       6778899999999999876 6899999999999999999999999998


Q ss_pred             cc
Q psy8766         133 AA  134 (135)
Q Consensus       133 a~  134 (135)
                      |+
T Consensus       483 a~  484 (682)
T PHA02876        483 AL  484 (682)
T ss_pred             HH
Confidence            75

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=141.56  Aligned_cols=131  Identities=18%  Similarity=0.041  Sum_probs=106.0

Q ss_pred             CCCCcc------ccccCCChHHHHHHH--hCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHh
Q psy8766           2 TGADLN------VLDKEKRSPLLLAAS--RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL   73 (135)
Q Consensus         2 ~g~~~n------~~~~~g~tpl~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~   73 (135)
                      +|+++|      .++..++|+||.++.  .++.+++++|+++|++++..  .+.||+|.|+..++.++++++........
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~  176 (437)
T PHA02795         99 KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDE  176 (437)
T ss_pred             cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCccc
Confidence            577877      677788999999999  89999999999999999874  45899999999998888888877553211


Q ss_pred             cCCc------------------chhhh-h------hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCC
Q psy8766          74 GEGE------------------ASQGI-Q------NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES  128 (135)
Q Consensus        74 ~~~~------------------~~~~~-~------~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t  128 (135)
                      ....                  ....+ .      ..++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus       177 n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~T  256 (437)
T PHA02795        177 NDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYT  256 (437)
T ss_pred             ccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            1100                  00011 0      015678889999999999999999999999999999999999999


Q ss_pred             cchhcc
Q psy8766         129 PLHLAA  134 (135)
Q Consensus       129 pl~~a~  134 (135)
                      |||+|+
T Consensus       257 pLh~Aa  262 (437)
T PHA02795        257 CLDVAV  262 (437)
T ss_pred             HHHHHH
Confidence            999986

>PHA02946 ankyin-like protein; Provisional

Probab=99.92  E-value=2e-24  Score=143.28  Aligned_cols=125  Identities=22%  Similarity=0.264  Sum_probs=99.9

Q ss_pred             CCCCccccccCCChHHHHHHHhC--CHHHHHHHHHcCCCccc-cccCCchHHHHHHHhCCCchHHHHHHHHHH-------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG--GWKTVLTLVRNKANILL-KDINRRNILHLLVLNGGGHIKEFAEEVAAV-------   71 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~--~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~-------   71 (135)
                      +|+|+|.+|.+|.||||+|+..+  ..+++++|+++|++++. .+..|.|||| |+..++.++++++......       
T Consensus        94 ~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~  172 (446)
T PHA02946         94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKF  172 (446)
T ss_pred             CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCC
Confidence            68999999999999999998766  47889999999999985 6889999997 5556777777776643221       


Q ss_pred             ---------------------HhcCCcchhhhhhhhhccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCeeecCCCCCC
Q psy8766          72 ---------------------FLGEGEASQGIQNLLNEKDKTGCSPLHYASREG--HIISLENLINLGACINLKNNSNES  128 (135)
Q Consensus        72 ---------------------~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~t  128 (135)
                                           +++.+..       ++..+..|+||||+|+..+  +.+++++|+. |++++.+|..|.|
T Consensus       173 G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-------in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~T  244 (446)
T PHA02946        173 GKNHIHRHLMSDNPKASTISWMMKLGIS-------PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDS  244 (446)
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCC
Confidence                                 1112221       5667889999999999886  7899999885 8999999999999


Q ss_pred             cchhccC
Q psy8766         129 PLHLAAR  135 (135)
Q Consensus       129 pl~~a~~  135 (135)
                      |||+|++
T Consensus       245 pLh~A~~  251 (446)
T PHA02946        245 PLTLLIK  251 (446)
T ss_pred             HHHHHHH
Confidence            9999863

>PHA03095 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.8e-24  Score=144.78  Aligned_cols=126  Identities=27%  Similarity=0.345  Sum_probs=82.3

Q ss_pred             CCCCccccccCCChHHHHHHHhC--CHHHHHHHHHcCCCccccccCCchHHHHHHHh--CCCchHHHHH-----------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG--GWKTVLTLVRNKANILLKDINRRNILHLLVLN--GGGHIKEFAE-----------   66 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~-----------   66 (135)
                      +|+|++.+|..|.||||+|+..+  ..+++++|++.|++++..+..|.||||+++..  +...+++.+.           
T Consensus       141 ~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~  220 (471)
T PHA03095        141 KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM  220 (471)
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCC
Confidence            35555555555555555555443  34555555555555555555555555555443  2222222221           


Q ss_pred             -----------------HHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCc
Q psy8766          67 -----------------EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESP  129 (135)
Q Consensus        67 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tp  129 (135)
                                       .....++..+..       ++..+..|+||||+|+..|+.+++++|++.|++++.++..|+||
T Consensus       221 ~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-------in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp  293 (471)
T PHA03095        221 LGNTPLHSMATGSSCKRSLVLPLLIAGIS-------INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP  293 (471)
T ss_pred             CCCCHHHHHHhcCCchHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence                             122233334433       67788999999999999999999999999999999999999999


Q ss_pred             chhcc
Q psy8766         130 LHLAA  134 (135)
Q Consensus       130 l~~a~  134 (135)
                      |++|+
T Consensus       294 l~~A~  298 (471)
T PHA03095        294 LSLMV  298 (471)
T ss_pred             HHHHH
Confidence            99986

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.9e-25  Score=144.74  Aligned_cols=113  Identities=26%  Similarity=0.308  Sum_probs=95.4

Q ss_pred             ccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhh
Q psy8766           8 VLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLN   87 (135)
Q Consensus         8 ~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (135)
                      ..+.+|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.++++++..       .+..       ++
T Consensus        97 ~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-------~g~~-------~~  162 (413)
T PHA02875         97 VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID-------HKAC-------LD  162 (413)
T ss_pred             cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-------cCCC-------CC
Confidence            345678899999999999999999999999999888899999999999887666555544       3333       67


Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCC-Ccchhcc
Q psy8766          88 EKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNE-SPLHLAA  134 (135)
Q Consensus        88 ~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-tpl~~a~  134 (135)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|. ||+++|+
T Consensus       163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~  210 (413)
T PHA02875        163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAI  210 (413)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHH
Confidence            7888999999999999999999999999999999988875 7888776

>KOG0510|consensus

Probab=99.92  E-value=1.8e-25  Score=151.01  Aligned_cols=117  Identities=32%  Similarity=0.393  Sum_probs=86.2

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhh
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNL   85 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (135)
                      +|-.|.+|.||||+||..|+.++++.|+..|++++.++.++.||||.|+++|++..++.+++.....            +
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r------------l  333 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTR------------L  333 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc------------c
Confidence            4667899999999999999999999999999999999999999999999999887777666511110            1


Q ss_pred             hhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCee---ecCCCCCCcchhcc
Q psy8766          86 LNEKDKTGCSPLHYASREGHIISLENLINLGACIN---LKNNSNESPLHLAA  134 (135)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~---~~~~~g~tpl~~a~  134 (135)
                      ++..|-.|.||||+|+..|+.++++.|++.|++..   ..|.+|.||||+|+
T Consensus       334 lne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa  385 (929)
T KOG0510|consen  334 LNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAA  385 (929)
T ss_pred             cccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHH
Confidence            44455556666666666666666666666666554   33556666666654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=131.36  Aligned_cols=117  Identities=20%  Similarity=0.240  Sum_probs=96.8

Q ss_pred             ccccccCCChHHHHHHHhC--CHHHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           6 LNVLDKEKRSPLLLAASRG--GWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~--~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      +|..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+......    ..++...+++.+..    
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~----~~eiv~~Ll~~gad----  115 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNV----EPEILKILIDSGSS----  115 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccc----cHHHHHHHHHCCCC----
Confidence            5778899999999999855  8999999999999999997 58999999987643111    12344455555655    


Q ss_pred             hhhhhccCCCCCcHHHHHHh--cCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          83 QNLLNEKDKTGCSPLHYASR--EGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                         ++.++..|.||||+|+.  .++.+++++|++.|++++.+|..|.||||.+
T Consensus       116 ---in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~  165 (209)
T PHA02859        116 ---ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSY  165 (209)
T ss_pred             ---CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Confidence               78899999999999875  4689999999999999999999999999953

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.92  E-value=2e-24  Score=148.70  Aligned_cols=121  Identities=20%  Similarity=0.220  Sum_probs=100.6

Q ss_pred             CC-CCcccc-ccCCChHHHHHHHh--CCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc
Q psy8766           2 TG-ADLNVL-DKEKRSPLLLAASR--GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         2 ~g-~~~n~~-~~~g~tpl~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (135)
                      +| +|+|.+ +..|.||||+|+..  ++.+++++|++.|++++.+|..|.||||+|+..|+..     .+....+++.++
T Consensus       164 ~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~-----~eIVklLLe~GA  238 (764)
T PHA02716        164 VGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVC-----ASVIKKIIELGG  238 (764)
T ss_pred             CCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC-----HHHHHHHHHcCC
Confidence            57 899998 89999999988654  5789999999999999999999999999999998531     123344445555


Q ss_pred             chhhhhhhhhccCCCCCcHHHHH-------------------------------------HhcCcHHHHHHHHHcCCCee
Q psy8766          78 ASQGIQNLLNEKDKTGCSPLHYA-------------------------------------SREGHIISLENLINLGACIN  120 (135)
Q Consensus        78 ~~~~~~~~~~~~~~~~~t~l~~a-------------------------------------~~~~~~~~~~~ll~~g~~~~  120 (135)
                      .       ++.++..|+||||.|                                     +..|+.+++++|++.|++++
T Consensus       239 D-------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN  311 (764)
T PHA02716        239 D-------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH  311 (764)
T ss_pred             C-------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee
Confidence            4       777888999999865                                     34577899999999999999


Q ss_pred             ecCCCCCCcchhcc
Q psy8766         121 LKNNSNESPLHLAA  134 (135)
Q Consensus       121 ~~~~~g~tpl~~a~  134 (135)
                      .+|..|+||||+|+
T Consensus       312 ~kD~~G~TPLH~Aa  325 (764)
T PHA02716        312 YKDSAGRTCLHQYI  325 (764)
T ss_pred             ccCCCCCCHHHHHH
Confidence            99999999999864

>KOG0195|consensus

Probab=99.92  E-value=1.3e-24  Score=132.90  Aligned_cols=117  Identities=32%  Similarity=0.357  Sum_probs=108.2

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      .-|.|.-|..|.+||||||+.|+..+++.|+..|+.++..+....||||+|+..|+.+++..++....+           
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kad-----------   92 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD-----------   92 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcc-----------
Confidence            457888899999999999999999999999999999999999999999999999998877776665554           


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                         ++..+..|+||||+||..|...+++-|+..|+.+++.+++|.||+..|
T Consensus        93 ---vnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   93 ---VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             ---cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence               788999999999999999999999999999999999999999999875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=2.4e-24  Score=126.15  Aligned_cols=114  Identities=18%  Similarity=0.096  Sum_probs=96.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHH---HHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKT---VLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~---~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (135)
                      .|.+++.+|..|+||||+|+..++.+.   +++|++.|++++.++ ..|.||||+|+..++.++++++..      ..+.
T Consensus        46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~------~~ga  119 (166)
T PHA02743         46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCR------QLGV  119 (166)
T ss_pred             cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh------ccCC
Confidence            467888999999999999999988654   899999999999998 589999999999998665554432      1233


Q ss_pred             chhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCC
Q psy8766          78 ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES  128 (135)
Q Consensus        78 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t  128 (135)
                      .       ++..+..|+||||+|+..++.+++++|+++|++++.++..|..
T Consensus       120 d-------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        120 N-------LGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             C-------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            3       6778889999999999999999999999999999998887753

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.9e-24  Score=134.90  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=95.6

Q ss_pred             cccccCCChH-HHHHHHhCCHHHHHHHHHcCCCcccc----ccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           7 NVLDKEKRSP-LLLAASRGGWKTVLTLVRNKANILLK----DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         7 n~~~~~g~tp-l~~a~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      -.+|..|.|+ ||.|+..++.+++++|+++|++++.+    +..|.||||+|+..++.++++++.       ..++.   
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-------~~GAD---   95 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-------RYGAD---   95 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-------HcCCC---
Confidence            4567777765 56677778999999999999999987    468999999999999865555444       44444   


Q ss_pred             hhhhhhcc-CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEK-DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++.. +..|.||||+|+..++.+++++|+..|++++.+|..|.||+++|+
T Consensus        96 ----VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~  145 (300)
T PHA02884         96 ----VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL  145 (300)
T ss_pred             ----cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence                6664 457999999999999999999999999999999999999999985

>KOG0510|consensus

Probab=99.91  E-value=5.7e-24  Score=143.94  Aligned_cols=134  Identities=36%  Similarity=0.523  Sum_probs=112.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHH--------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE--------------   67 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~--------------   67 (135)
                      .|+|+|..|..|.||||+||..++.|..+.|++.|+++...|.+|..|+|.|+.+|+.+..++...              
T Consensus       143 ~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~  222 (929)
T KOG0510|consen  143 YGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDN  222 (929)
T ss_pred             hcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccccc
Confidence            579999999999999999999999998899999999999999999999999999998877666544              


Q ss_pred             -----------------HHHHHhcCCcc--------hhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeec
Q psy8766          68 -----------------VAAVFLGEGEA--------SQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK  122 (135)
Q Consensus        68 -----------------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~  122 (135)
                                       ..+.++..+..        .....++++..|..|.||||+|++.|+.+.++.|+.+|++++.+
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k  302 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK  302 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc
Confidence                             12222222211        12234457888999999999999999999999999999999999


Q ss_pred             CCCCCCcchhccC
Q psy8766         123 NNSNESPLHLAAR  135 (135)
Q Consensus       123 ~~~g~tpl~~a~~  135 (135)
                      +.++.||||.|++
T Consensus       303 n~d~~spLH~AA~  315 (929)
T KOG0510|consen  303 NKDEESPLHFAAI  315 (929)
T ss_pred             CCCCCCchHHHHH
Confidence            9999999999974

>KOG0508|consensus

Probab=99.91  E-value=5.9e-25  Score=141.42  Aligned_cols=118  Identities=26%  Similarity=0.345  Sum_probs=107.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|..+.-..|||-.||..|+++++++|+++|+|+++.|+.|.|.|++|+..|+.+++.++.+...+          
T Consensus       106 ~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD----------  175 (615)
T KOG0508|consen  106 RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD----------  175 (615)
T ss_pred             hcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC----------
Confidence            5899999887778999999999999999999999999999999999999999999998877777766554          


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++.++..|+|+||.|++.|+.+++++|+.+|+.++. |..|.|||..|+
T Consensus       176 ----vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  176 ----VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAA  223 (615)
T ss_pred             ----cchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHh
Confidence                788999999999999999999999999999999866 666999999875

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.2e-24  Score=144.65  Aligned_cols=119  Identities=29%  Similarity=0.315  Sum_probs=69.6

Q ss_pred             CCCCccccccCCChHHHH-----HHHhCCHHHHHHHHHcCCCccccccCCchHHHHHH--HhCCCchHHHHHHHHHHHhc
Q psy8766           2 TGADLNVLDKEKRSPLLL-----AASRGGWKTVLTLVRNKANILLKDINRRNILHLLV--LNGGGHIKEFAEEVAAVFLG   74 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~-----a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~~~~~~~~~   74 (135)
                      +|++++..+..|.||||+     |+..++.+++++|++.|++++..+..|.||||+|+  ..++.++++++..       
T Consensus        57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-------  129 (480)
T PHA03100         57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-------  129 (480)
T ss_pred             cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHH-------
Confidence            456666666666666666     66666666666666666666666666666666666  5555444443332       


Q ss_pred             CCcchhhhhhhhhccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          75 EGEASQGIQNLLNEKDKTGCSPLHYASREG--HIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .+..       ++..+..|.||||+|+..+  +.+++++|+++|++++.++..|.||||+|+
T Consensus       130 ~g~~-------~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        130 NGAN-------VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             cCCC-------CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            2222       3444555566666666655  556666666666666555555666666554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.1e-24  Score=144.99  Aligned_cols=123  Identities=28%  Similarity=0.271  Sum_probs=104.0

Q ss_pred             CCCCCccccccCCChHHHHHHHh-----CCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcC
Q psy8766           1 MTGADLNVLDKEKRSPLLLAASR-----GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE   75 (135)
Q Consensus         1 ~~g~~~n~~~~~g~tpl~~a~~~-----~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~   75 (135)
                      ++|+|+|.+|..|.||||.|+.+     +..+++++|+++|++++.+|..|.||||+|+..+....    .+....+++.
T Consensus        59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~----~~iv~~Ll~~  134 (489)
T PHA02798         59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINN----LEILLFMIEN  134 (489)
T ss_pred             HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcCh----HHHHHHHHHc
Confidence            37999999999999999998764     67899999999999999999999999999998764221    3344445555


Q ss_pred             CcchhhhhhhhhccCCCCCcHHHHHHhcCc---HHHHHHHHHcCCCeeecC-CCCCCcchhcc
Q psy8766          76 GEASQGIQNLLNEKDKTGCSPLHYASREGH---IISLENLINLGACINLKN-NSNESPLHLAA  134 (135)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~  134 (135)
                      +..       ++..+..|.||||+|+..++   .+++++|++.|++++..+ ..|.||+|.++
T Consensus       135 Gad-------vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        135 GAD-------TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYF  190 (489)
T ss_pred             CCC-------ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHH
Confidence            655       78889999999999999987   999999999999999885 56889998753

>KOG0502|consensus

Probab=99.90  E-value=6.3e-24  Score=125.04  Aligned_cols=117  Identities=27%  Similarity=0.333  Sum_probs=105.8

Q ss_pred             CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      .-+|..|..|.|||.||+..|++.++++|++.|++++...+...++|.+|++.|-.+       +...++..+.+     
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytd-------iV~lLL~r~vd-----  218 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTD-------IVELLLTREVD-----  218 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHH-------HHHHHHhcCCC-----
Confidence            457999999999999999999999999999999999999999999999999999544       44445555544     


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                        ++..|.+|-|||-+|++-++.++++.|++.|++++..+..|.+++..|+
T Consensus       219 --VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  219 --VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             --cceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence              7889999999999999999999999999999999999999999999875

>KOG0512|consensus

Probab=99.89  E-value=3e-23  Score=118.09  Aligned_cols=116  Identities=26%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQN   84 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
                      .+|.+|.+|.||||-|+++|+.++++.|+..|++++.+...|+||||.|+...+.+++.+++....+             
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaD-------------  155 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGAD-------------  155 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCc-------------
Confidence            5788888888888888888888888888888888888888888888888888876555555544443             


Q ss_pred             hhhccCCCCCcHHHHHHhcCcH-HHHHHHH-HcCCCeeecCCCCCCcchhcc
Q psy8766          85 LLNEKDKTGCSPLHYASREGHI-ISLENLI-NLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        85 ~~~~~~~~~~t~l~~a~~~~~~-~~~~~ll-~~g~~~~~~~~~g~tpl~~a~  134 (135)
                       ++.......||||+|+...+. ..+.+|+ ..+..+-..+..++||+.+|-
T Consensus       156 -VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  156 -VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             -ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence             677777778888888876554 3444444 457777777888888888764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.9e-22  Score=136.21  Aligned_cols=125  Identities=20%  Similarity=0.191  Sum_probs=101.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCC----HHHHHHHHHcCC--CccccccCCchHHHH--HHH-hCCC-chHH-HHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGG----WKTVLTLVRNKA--NILLKDINRRNILHL--LVL-NGGG-HIKE-FAEEVAA   70 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~----~~~~~~Ll~~g~--~~~~~~~~g~t~l~~--a~~-~~~~-~~~~-~~~~~~~   70 (135)
                      +|+|+|.. ..|.||||+|+..++    .+++++|+++|+  +++.+|..|.||||.  ++. .+.. ...+ .......
T Consensus       368 ~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        368 NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            69999986 799999999998885    899999999987  689999999999984  222 2210 0001 1223455


Q ss_pred             HHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCC-CCCCcchhcc
Q psy8766          71 VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNN-SNESPLHLAA  134 (135)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a~  134 (135)
                      .++..+..       ++.++..|+||||+|+..++.+++++|+++|++++.++. .|.||+++|+
T Consensus       447 ~LIs~GAD-------INakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa  504 (672)
T PHA02730        447 ILSKYMDD-------IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSS  504 (672)
T ss_pred             HHHhcccc-------hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHH
Confidence            56666655       889999999999999999999999999999999999997 5999999885

>PHA02917 ankyrin-like protein; Provisional

Probab=99.89  E-value=6.2e-23  Score=141.11  Aligned_cols=133  Identities=17%  Similarity=0.091  Sum_probs=95.5

Q ss_pred             CCCCccccccCCChHHHHHHHhC-----------------------------------CHHHHHHHHHcCCCccccccCC
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG-----------------------------------GWKTVLTLVRNKANILLKDINR   46 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~-----------------------------------~~~~~~~Ll~~g~~~~~~~~~g   46 (135)
                      +|+|++.++..|.||||+|+..|                                   +.+++++|++.|++++.+|..|
T Consensus        57 ~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g  136 (661)
T PHA02917         57 SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENH  136 (661)
T ss_pred             CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCC
Confidence            68899999999999999777643                                   4577888999999999999999


Q ss_pred             chHHHHHH--HhCCCchHHHHHHHHHHHhcCCcc-hhhhhhhhhccCCCCCcHHHHHHh-----------cCcHHHHHHH
Q psy8766          47 RNILHLLV--LNGGGHIKEFAEEVAAVFLGEGEA-SQGIQNLLNEKDKTGCSPLHYASR-----------EGHIISLENL  112 (135)
Q Consensus        47 ~t~l~~a~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~l~~a~~-----------~~~~~~~~~l  112 (135)
                      .||||.++  ..++.+++++++............ ..+. .........+.||||+|+.           .++.+++++|
T Consensus       137 ~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~-~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~L  215 (661)
T PHA02917        137 RSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGY-AYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCL  215 (661)
T ss_pred             ccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccc-ccccccccccccHHHHHHhhcccccccccccCcHHHHHHH
Confidence            99999654  467766666666543321100000 0000 0000112234699999976           4688999999


Q ss_pred             HHcCCCeeecCCCCCCcchhccC
Q psy8766         113 INLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus       113 l~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +++|++++.+|..|.||||+|++
T Consensus       216 i~~Gadvn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        216 INHGIKPSSIDKNYCTALQYYIK  238 (661)
T ss_pred             HHCCCCcccCCCCCCcHHHHHHH
Confidence            99999999999999999999873

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=4e-22  Score=134.23  Aligned_cols=118  Identities=21%  Similarity=0.246  Sum_probs=89.5

Q ss_pred             CCCCccccccCCChHHHHHHH------hCCHHHHHHHHHcCCCccccccCCchHHHHHHHhC---CCchHHHHHHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAAS------RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG---GGHIKEFAEEVAAVF   72 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~---~~~~~~~~~~~~~~~   72 (135)
                      +|+|+|.++ .+.||||.|+.      .++.+++++|++.|++++.++..|.||||.|+..+   +.+++++       +
T Consensus        59 ~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~-------L  130 (494)
T PHA02989         59 NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRF-------L  130 (494)
T ss_pred             cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHH-------H
Confidence            699999987 67999999865      57889999999999999999999999999988654   4344444       4


Q ss_pred             hcCCcchhhhhhhh-hccCCCCCcHHHHHHhc--CcHHHHHHHHHcCCCeee-cCCCCCCcchhcc
Q psy8766          73 LGEGEASQGIQNLL-NEKDKTGCSPLHYASRE--GHIISLENLINLGACINL-KNNSNESPLHLAA  134 (135)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~~~~~t~l~~a~~~--~~~~~~~~ll~~g~~~~~-~~~~g~tpl~~a~  134 (135)
                      ++.+..       + +..+..|+||||+|+..  ++.+++++|+++|++++. .+..|.|||++|+
T Consensus       131 l~~Gad-------in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~  189 (494)
T PHA02989        131 LSKGIN-------VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYL  189 (494)
T ss_pred             HHCCCC-------cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHH
Confidence            444444       5 45667777777776543  567777777777777776 4667777777653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=9.2e-23  Score=118.31  Aligned_cols=119  Identities=19%  Similarity=0.228  Sum_probs=90.2

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCC-----ccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcch
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN-----ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS   79 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
                      .++.+|.+|.||||+|+..|+...+..+.....+     +..+|..|.||||+|+..++.+..    +....++..+.. 
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~----e~v~~Ll~~gad-   83 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ----EKLKLLMEWGAD-   83 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH----HHHHHHHHcCCC-
Confidence            3467788999999999999984322221121112     345688999999999998875432    223444455544 


Q ss_pred             hhhhhhhhccC-CCCCcHHHHHHhcCcHHHHHHHHH-cCCCeeecCCCCCCcchhcc
Q psy8766          80 QGIQNLLNEKD-KTGCSPLHYASREGHIISLENLIN-LGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        80 ~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~  134 (135)
                            ++.++ ..|+||||+|+..++.+++++|+. .|++++.++..|+|||++|+
T Consensus        84 ------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~  134 (154)
T PHA02736         84 ------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC  134 (154)
T ss_pred             ------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH
Confidence                  67776 589999999999999999999997 59999999999999999986

>PHA02917 ankyrin-like protein; Provisional

Probab=99.88  E-value=4.9e-22  Score=136.72  Aligned_cols=126  Identities=15%  Similarity=0.085  Sum_probs=97.1

Q ss_pred             CCCCccccccCCChHHHHHHHh---CCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHH----HHHH-------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE----FAEE-------   67 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~----~~~~-------   67 (135)
                      +|..++.+|.+|+||||+|+..   |+.+++++|++.|++++.++..|.||||+|+.+++.++..    .+..       
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCC
Confidence            5777888899999999998666   7899999999999999999999999999999999865432    2221       


Q ss_pred             -----------------HHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHH--hcCcHHHHHHHHHcCCCeeecCCC---
Q psy8766          68 -----------------VAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS--REGHIISLENLINLGACINLKNNS---  125 (135)
Q Consensus        68 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~ll~~g~~~~~~~~~---  125 (135)
                                       ....++..+..       ++.++..|.||||.++  ..++.+++++|+++|++++..|..   
T Consensus       101 ~~~~~~~~~a~~~~~~e~vk~Ll~~Gad-------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~  173 (661)
T PHA02917        101 NDFNIFSYMKSKNVDVDLIKVLVEHGFD-------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEY  173 (661)
T ss_pred             CCcchHHHHHhhcCCHHHHHHHHHcCCC-------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccc
Confidence                             11111222222       5667888999999654  578999999999999999876532   


Q ss_pred             C-----------CCcchhcc
Q psy8766         126 N-----------ESPLHLAA  134 (135)
Q Consensus       126 g-----------~tpl~~a~  134 (135)
                      |           .||||+|+
T Consensus       174 g~~~~~~~~~~~~t~L~~a~  193 (661)
T PHA02917        174 GYAYDDYQPRNCGTVLHLYI  193 (661)
T ss_pred             ccccccccccccccHHHHHH
Confidence            3           59999875

>KOG0505|consensus

Probab=99.88  E-value=1.2e-22  Score=131.98  Aligned_cols=133  Identities=26%  Similarity=0.287  Sum_probs=112.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|..+.+|.|+||-+|...+.+||++|+++|++++..|..++||||.|+..|+..++.+++.....+..-+.....
T Consensus        62 ~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~  141 (527)
T KOG0505|consen   62 RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNM  141 (527)
T ss_pred             cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999998877766543222111


Q ss_pred             hhhh---------------------------------------------hhccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8766          82 IQNL---------------------------------------------LNEKDKTGCSPLHYASREGHIISLENLINLG  116 (135)
Q Consensus        82 ~~~~---------------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g  116 (135)
                      ....                                             .......|-|.||+|+..|..++.++|+++|
T Consensus       142 P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag  221 (527)
T KOG0505|consen  142 PYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAG  221 (527)
T ss_pred             ccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhc
Confidence            1000                                             1223445899999999999999999999999


Q ss_pred             CCeeecCCCCCCcchhcc
Q psy8766         117 ACINLKNNSNESPLHLAA  134 (135)
Q Consensus       117 ~~~~~~~~~g~tpl~~a~  134 (135)
                      .+++++|.+||||||.|+
T Consensus       222 ~~~~~~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  222 YSVNIKDYDGWTPLHAAA  239 (527)
T ss_pred             cCcccccccCCCcccHHH
Confidence            999999999999999875

>KOG0514|consensus

Probab=99.87  E-value=4.7e-23  Score=128.97  Aligned_cols=120  Identities=19%  Similarity=0.267  Sum_probs=81.3

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcC-CCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      -||..|.+|+|+|||++..+++++|+.||+.| ++++..|+.|+||+.+++...-..-.  -..+..-++.-+.      
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~--d~~vV~~LF~mgn------  331 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPA--DRTVVERLFKMGD------  331 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchh--hHHHHHHHHhccC------
Confidence            36889999999999999999999999999986 79999999999999998764311100  0111111111111      


Q ss_pred             hhhhc-cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          84 NLLNE-KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        84 ~~~~~-~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                        ++. ....|+|+|++|+.+|..++++.|+..|+|+|++|.+|.|+|+.|+
T Consensus       332 --VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~  381 (452)
T KOG0514|consen  332 --VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAA  381 (452)
T ss_pred             --cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhh
Confidence              222 2245666666666666666666666666666666666666666665

>KOG4177|consensus

Probab=99.87  E-value=3e-22  Score=141.34  Aligned_cols=127  Identities=27%  Similarity=0.327  Sum_probs=101.2

Q ss_pred             CCCCccccccCCChHHHHHHHhC-CHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHH-----------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG-GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA-----------   69 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~-----------   69 (135)
                      +|++.|.++..|.||+|.|+..| ..+....+++.|++++.....|.||||.|+..|+.+++..+.+..           
T Consensus       429 ~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l  508 (1143)
T KOG4177|consen  429 RGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGL  508 (1143)
T ss_pred             cCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhcc
Confidence            58889999999999999999998 777788888899999999999999999999999888777766532           


Q ss_pred             ---------------HHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          70 ---------------AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        70 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                                     ..++..+.       .++.++.++.||||.|+..|+.++|++|+++|++++.+++.|+||||.|+
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga-------~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa  581 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGA-------NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAA  581 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCC-------ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHH
Confidence                           11111111       14556677888888888888888888888888888888888888888886


Q ss_pred             C
Q psy8766         135 R  135 (135)
Q Consensus       135 ~  135 (135)
                      .
T Consensus       582 ~  582 (1143)
T KOG4177|consen  582 Q  582 (1143)
T ss_pred             H
Confidence            3

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.87  E-value=9.4e-22  Score=104.23  Aligned_cols=89  Identities=33%  Similarity=0.503  Sum_probs=76.1

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcH
Q psy8766          17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSP   96 (135)
Q Consensus        17 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~   96 (135)
                      ||+|+..++.+++++|++.+.+++.    |.||||+|+..|+.++++++.+       .+..       ++..+..|+||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~-------~g~~-------~~~~~~~g~t~   62 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLE-------NGAD-------INSQDKNGNTA   62 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHH-------TTTC-------TT-BSTTSSBH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHH-------hccc-------ccccCCCCCCH
Confidence            7999999999999999999988877    8899999999998666666655       3333       67788999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCeeecC
Q psy8766          97 LHYASREGHIISLENLINLGACINLKN  123 (135)
Q Consensus        97 l~~a~~~~~~~~~~~ll~~g~~~~~~~  123 (135)
                      ||+|+..++.+++++|+++|++++.+|
T Consensus        63 L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   63 LHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999999999999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512|consensus

Probab=99.87  E-value=7.2e-22  Score=112.52  Aligned_cols=105  Identities=30%  Similarity=0.333  Sum_probs=91.4

Q ss_pred             HHHHHHhCCHHHHHHHHHcCC-CccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCc
Q psy8766          17 LLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCS   95 (135)
Q Consensus        17 l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t   95 (135)
                      +.+|+..+..+.|+.|++..+ .++.+|.+|+||||-|+.+|+.+++..+.       ..++.       .+.+...|||
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll-------~~gAn-------~~a~T~~GWT  132 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELL-------LSGAN-------KEAKTNEGWT  132 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHH-------HccCC-------cccccccCcc
Confidence            568999999999999997655 48999999999999999999866554443       44444       6778899999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          96 PLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        96 ~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      |||.||...+.+++.+|+++|+|+++......||||.|+.
T Consensus       133 PLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~  172 (228)
T KOG0512|consen  133 PLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG  172 (228)
T ss_pred             chhhhhcccchhHHHHHHhccCcccccccccchhhHHhhc
Confidence            9999999999999999999999999999989999999873

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=1.4e-21  Score=137.88  Aligned_cols=112  Identities=21%  Similarity=0.267  Sum_probs=91.6

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      +.++.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.++++++....       ..       ++.+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-------ad-------in~~  587 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA-------CN-------VHIR  587 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC-------CC-------CCCc
Confidence            445679999999999999999999999999999999999999999999877666655432       22       3444


Q ss_pred             CCCCCcH-------------------------------HHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          90 DKTGCSP-------------------------------LHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        90 ~~~~~t~-------------------------------l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +..|+||                               ||.|+..|+.++++.|+++|++++.+|..|+||||+|++
T Consensus       588 d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~  664 (823)
T PLN03192        588 DANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA  664 (823)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            4555555                               456666777778888899999999999999999999863

>KOG4177|consensus

Probab=99.86  E-value=1.2e-21  Score=138.38  Aligned_cols=119  Identities=36%  Similarity=0.452  Sum_probs=95.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHH---------------------------------cCCCccccccCCch
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR---------------------------------NKANILLKDINRRN   48 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~---------------------------------~g~~~~~~~~~g~t   48 (135)
                      .|+++|.....|.||||.|+..|+.++++.|++                                 +|++++.++.+|.|
T Consensus       463 ~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~T  542 (1143)
T KOG4177|consen  463 YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYT  542 (1143)
T ss_pred             cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccc
Confidence            467777777777777777777777666666654                                 34566667888899


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCC
Q psy8766          49 ILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES  128 (135)
Q Consensus        49 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t  128 (135)
                      |||.|+.+|+..+++++++....              ++.+++.|+||||.|+..|+.+++++|+++|+++|..|.+|.|
T Consensus       543 pLh~A~~~g~v~~VkfLLe~gAd--------------v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~T  608 (1143)
T KOG4177|consen  543 PLHVAVHYGNVDLVKFLLEHGAD--------------VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFT  608 (1143)
T ss_pred             hHHHHHhcCCchHHHHhhhCCcc--------------ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcc
Confidence            99999999987766666655544              6778889999999999999999999999999999999999999


Q ss_pred             cchhcc
Q psy8766         129 PLHLAA  134 (135)
Q Consensus       129 pl~~a~  134 (135)
                      ||+.|+
T Consensus       609 pL~iA~  614 (1143)
T KOG4177|consen  609 PLHIAV  614 (1143)
T ss_pred             hhHHHH
Confidence            999875

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=1.8e-21  Score=114.41  Aligned_cols=103  Identities=19%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             CCCccccccCCChHHHHHHHhCC----HHHHHHHHHcCCCcccccc-CCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGG----WKTVLTLVRNKANILLKDI-NRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~----~~~~~~Ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (135)
                      |+++|.+|..|.||||+|+..++    .+++++|++.|++++.++. .|.||||+|+..++.+++++++..      .+.
T Consensus        50 ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~------~g~  123 (169)
T PHA02741         50 AAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQ------PGI  123 (169)
T ss_pred             hhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhC------CCC
Confidence            68899999999999999999998    5889999999999999985 999999999999986655555431      122


Q ss_pred             chhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          78 ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        78 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                      .       ++..+..|+|||++|+..++.+++++|++.++.
T Consensus       124 ~-------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        124 D-------LHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             C-------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2       677788999999999999999999999987654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.84  E-value=2.6e-20  Score=104.09  Aligned_cols=113  Identities=39%  Similarity=0.557  Sum_probs=98.4

Q ss_pred             ccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhh
Q psy8766           8 VLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLN   87 (135)
Q Consensus         8 ~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (135)
                      .++.+|.||||.|+..++.+++++|++.+.+.+.++..|.+|+|+|+..++.++++++.....       .       ++
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-------~-------~~   67 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-------D-------VN   67 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-------C-------cc
Confidence            456789999999999999999999999999989999999999999999998655555554322       1       45


Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          88 EKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        88 ~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ..+..+.||+|+|+..++.+++++|++.+.+++..+..+.||+++|.
T Consensus        68 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~  114 (126)
T cd00204          68 ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA  114 (126)
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            56678899999999999999999999999999999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=118.53  Aligned_cols=111  Identities=19%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             CCCCccccc----cCCChHHHHHHHhCCHHHHHHHHHcCCCcccc-ccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q psy8766           2 TGADLNVLD----KEKRSPLLLAASRGGWKTVLTLVRNKANILLK-DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG   76 (135)
Q Consensus         2 ~g~~~n~~~----~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (135)
                      +|+|+|.++    ..|.||||+|+..++.+++++|+++|++++.+ +..|.||||+|+..++.++++++.       ..+
T Consensus        55 ~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL-------~~G  127 (300)
T PHA02884         55 LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILL-------SYG  127 (300)
T ss_pred             CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHH-------HCC
Confidence            699999874    58999999999999999999999999999986 468999999999999765555554       444


Q ss_pred             cchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcch
Q psy8766          77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLH  131 (135)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~  131 (135)
                      ..       ++.++..|.||||+|+..++.+++..+..  ..   .+..+.+|+.
T Consensus       128 Ad-------in~kd~~G~TpL~~A~~~~~~~~~~~~~~--~~---~~~~~~~~~~  170 (300)
T PHA02884        128 AD-------INIQTNDMVTPIELALMICNNFLAFMICD--NE---ISNFYKHPKK  170 (300)
T ss_pred             CC-------CCCCCCCCCCHHHHHHHhCChhHHHHhcC--Cc---ccccccChhh
Confidence            44       77888999999999999888877755543  22   2334555554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.8e-21  Score=112.91  Aligned_cols=101  Identities=13%  Similarity=0.076  Sum_probs=84.6

Q ss_pred             cccccCCChHHHHHHHhCCH---HHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           7 NVLDKEKRSPLLLAASRGGW---KTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         7 n~~~~~g~tpl~~a~~~~~~---~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      +..|.+|.||||+|+..++.   +++++|++.|++++.++ ..|.||||+|+..++.+++++++.      ..+..    
T Consensus        49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~------~~g~d----  118 (154)
T PHA02736         49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCN------QPGVN----  118 (154)
T ss_pred             HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh------CCCCC----
Confidence            35688999999999999987   46889999999999998 499999999999998655544432      12333    


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCee
Q psy8766          83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN  120 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~  120 (135)
                         ++..+..|+||||+|+..++.+++++|++.|++.+
T Consensus       119 ---~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        119 ---MEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ---CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence               67788999999999999999999999999998865

>KOG0508|consensus

Probab=99.84  E-value=2.4e-21  Score=125.01  Aligned_cols=112  Identities=24%  Similarity=0.275  Sum_probs=101.1

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      ..+|-+||..|+..||+++|+.|+++|+++|......-|||-.||.-|+.++++++.+...       +       ++..
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~ga-------d-------~~Ia  146 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGA-------D-------PEIA  146 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCC-------C-------Cccc
Confidence            4577899999999999999999999999999999888999999999998777666665443       3       7888


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +..|.|-||+||++|+.+++++|++.|+|++.++..|.|+||.|++
T Consensus       147 nrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caE  192 (615)
T KOG0508|consen  147 NRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAE  192 (615)
T ss_pred             ccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhh
Confidence            9999999999999999999999999999999999999999998863

>PHA02730 ankyrin-like protein; Provisional

Probab=99.83  E-value=2.2e-20  Score=127.19  Aligned_cols=119  Identities=13%  Similarity=0.014  Sum_probs=84.5

Q ss_pred             CCcc-ccccCCChHHHHHHHhC---CHHHHHHHHHcCCCccccccCCchHHHHHHHhC--CCchHHHHHHHHHHHhcCCc
Q psy8766           4 ADLN-VLDKEKRSPLLLAASRG---GWKTVLTLVRNKANILLKDINRRNILHLLVLNG--GGHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         4 ~~~n-~~~~~g~tpl~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~~~~~~~~~~~~   77 (135)
                      +++| .+|.+|+||||+|+..+   +.+++++|+++|++++.+|..|.||||+|+..+  +.++++++.....     ++
T Consensus        31 ~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~-----~~  105 (672)
T PHA02730         31 HNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS-----NA  105 (672)
T ss_pred             cchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCC-----CC
Confidence            3677 88889999999999997   599999999999999999999999999999866  5555555554321     11


Q ss_pred             chhhhhhhhhccCCCCCcHHHHHHh--cCcHHHHHHHHH-cCCCeeecCC-----CCCCcchhcc
Q psy8766          78 ASQGIQNLLNEKDKTGCSPLHYASR--EGHIISLENLIN-LGACINLKNN-----SNESPLHLAA  134 (135)
Q Consensus        78 ~~~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~ll~-~g~~~~~~~~-----~g~tpl~~a~  134 (135)
                      .       .+..+..+.+||+.++.  .++.+++++|+. .+++++....     .|.+|++++.
T Consensus       106 ~-------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~  163 (672)
T PHA02730        106 S-------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTT  163 (672)
T ss_pred             C-------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhc
Confidence            1       23344456666666655  666677777774 4556555422     5666666654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.82  E-value=2.5e-19  Score=121.13  Aligned_cols=120  Identities=19%  Similarity=0.141  Sum_probs=98.1

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCC--chHHHHHHHhCCCchHHHHHHHHHHHhcCCcch
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR--RNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS   79 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g--~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
                      +|++++  ......+++.|+..++.+++++|+++|++++.+|..|  .||||+|........    ......++..++. 
T Consensus       330 ~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v----~~IlklLIs~GAD-  402 (631)
T PHA02792        330 EGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDV----LSILKLCKPYIDD-  402 (631)
T ss_pred             CCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhH----HHHHHHHHhcCCc-
Confidence            466664  2235667899999999999999999999999998775  699998776654332    2233344555554 


Q ss_pred             hhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          80 QGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        80 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                            ++.++..|+||||+|+..++.+++++|+++|++++.++..|.||+++|+
T Consensus       403 ------IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        403 ------INKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             ------cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence                  7889999999999999999999999999999999999999999999984

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.80  E-value=7.1e-20  Score=88.49  Aligned_cols=52  Identities=37%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             CC-CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHH
Q psy8766           2 TG-ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL   53 (135)
Q Consensus         2 ~g-~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a   53 (135)
                      +| .++|.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         4 ~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    4 HGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45 89999999999999999999999999999999999999999999999987

>KOG0502|consensus

Probab=99.80  E-value=2.1e-19  Score=106.13  Aligned_cols=118  Identities=25%  Similarity=0.177  Sum_probs=99.3

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+..|..+-.+.+|+.+++.+.+++.+..+.+.  .+|..|+.|+|||.+|+..|+.+++++++.       .+..   
T Consensus       118 N~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~-------~GAd---  185 (296)
T KOG0502|consen  118 NGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLN-------SGAD---  185 (296)
T ss_pred             ccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHH-------cCCC---
Confidence            4677888888999999999999888777666554  466779999999999999998666655554       4444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                          .....+...++|.+|+..|..+++++|+.++.|+|..|.+|.|||-+|++
T Consensus       186 ----p~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvr  235 (296)
T KOG0502|consen  186 ----PDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVR  235 (296)
T ss_pred             ----hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeec
Confidence                45566778899999999999999999999999999999999999999975

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.80  E-value=7.6e-19  Score=123.32  Aligned_cols=127  Identities=19%  Similarity=0.179  Sum_probs=89.8

Q ss_pred             CCCccccccCCChHHH-HHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           3 GADLNVLDKEKRSPLL-LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~-~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +.++|..|..|+|||| .|+.+++.++++.|++.|+    .+..|.||||.|+..+. +.++.+................
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~-~~v~~ll~~l~~~~~~~~~~~~  116 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYV-DAVEAILLHLLAAFRKSGPLEL  116 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccH-HHHHHHHHHHhhcccccCchhh
Confidence            7899999999999999 8888899999999999987    67789999999987432 2222222221111000000000


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecC--------------CCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN--------------NSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~--------------~~g~tpl~~a~  134 (135)
                      ...........|.||||+|+.+++.+++++|+++|++++.++              ..|+|||+.|+
T Consensus       117 ~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa  183 (743)
T TIGR00870       117 ANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA  183 (743)
T ss_pred             hccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH
Confidence            000011233579999999999999999999999999998753              25889999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.79  E-value=3.7e-19  Score=116.33  Aligned_cols=99  Identities=16%  Similarity=0.094  Sum_probs=81.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCC
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK   91 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (135)
                      .+.+++|.|+..++.+++++|+++|++++.+|..|.||||+|+..|+.++++++.       ..+..       ++.++.
T Consensus       187 ~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL-------~~GAd-------IN~~d~  252 (437)
T PHA02795        187 IQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLL-------ENGAN-------VNAVMS  252 (437)
T ss_pred             hccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH-------HCCCC-------CCCcCC
Confidence            3566777777777788888888899999999999999999999999866555554       44444       788999


Q ss_pred             CCCcHHHHHHhcCc--------HHHHHHHHHcCCCeeecCC
Q psy8766          92 TGCSPLHYASREGH--------IISLENLINLGACINLKNN  124 (135)
Q Consensus        92 ~~~t~l~~a~~~~~--------~~~~~~ll~~g~~~~~~~~  124 (135)
                      .|+||||+|+..|+        .+++++|+++|++++..+.
T Consensus       253 ~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        253 NGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence            99999999999884        6999999999999887653

>KOG0507|consensus

Probab=99.78  E-value=1.1e-19  Score=122.67  Aligned_cols=118  Identities=28%  Similarity=0.258  Sum_probs=107.7

Q ss_pred             CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      -.+|.+|.+|.|.||.|+.+|+.++++.|++.-+-++..+..|.+|||+|+..|+.++++.++.....            
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~------------  107 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI------------  107 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccC------------
Confidence            46788999999999999999999999999999999999999999999999999998887777654411            


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                        .+..+..|.||||.|+.+|+.+++++|+++|+++.++|..+.|++.+|++
T Consensus       108 --~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~q  157 (854)
T KOG0507|consen  108 --LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASR  157 (854)
T ss_pred             --CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHH
Confidence              67788899999999999999999999999999999999999999999875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.78  E-value=1.6e-19  Score=122.06  Aligned_cols=131  Identities=9%  Similarity=-0.004  Sum_probs=101.6

Q ss_pred             CCccccccCCChHHH-HHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHH-hCCCchHHHHHHHHHHHh---cCCcc
Q psy8766           4 ADLNVLDKEKRSPLL-LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVL-NGGGHIKEFAEEVAAVFL---GEGEA   78 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~-~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~-~~~~~~~~~~~~~~~~~~---~~~~~   78 (135)
                      .++|..+.+|..|+| .|+.+|+.|++++|+.+|++++.++..+.+|+++|+. .++.+++++++.......   ..+..
T Consensus        62 ~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~  141 (631)
T PHA02792         62 SSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYK  141 (631)
T ss_pred             hCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcc
Confidence            456777788888888 4677788899999999999999998888899999865 578788888777654311   10100


Q ss_pred             -------------------hhhhhhhhhccCCCCCcHHHHHHhcC-------cHHHHHHHHHcCCCeeecCCCCCCcchh
Q psy8766          79 -------------------SQGIQNLLNEKDKTGCSPLHYASREG-------HIISLENLINLGACINLKNNSNESPLHL  132 (135)
Q Consensus        79 -------------------~~~~~~~~~~~~~~~~t~l~~a~~~~-------~~~~~~~ll~~g~~~~~~~~~g~tpl~~  132 (135)
                                         -....-.++..+..|.||||+++..+       ..++++.|+.+|++++.+|..|.||||+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~  221 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYY  221 (631)
T ss_pred             hhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHH
Confidence                               00001124567788999999999998       8999999999999999999999999999


Q ss_pred             cc
Q psy8766         133 AA  134 (135)
Q Consensus       133 a~  134 (135)
                      |+
T Consensus       222 ~~  223 (631)
T PHA02792        222 YV  223 (631)
T ss_pred             HH
Confidence            86

>KOG0505|consensus

Probab=99.78  E-value=1.7e-19  Score=117.61  Aligned_cols=119  Identities=36%  Similarity=0.463  Sum_probs=95.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccC------------------------------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN------------------------------------   45 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~------------------------------------   45 (135)
                      .|++||..|..|+||||.|+..|+..++++|+.+|++....|..                                    
T Consensus        95 ~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e  174 (527)
T KOG0505|consen   95 NGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE  174 (527)
T ss_pred             hcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH
Confidence            58999999999999999999999999999999998876554433                                    


Q ss_pred             -----------------------CchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHh
Q psy8766          46 -----------------------RRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASR  102 (135)
Q Consensus        46 -----------------------g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~  102 (135)
                                             |-|.||.|+-.|..+       +..+++..+..       ++.+|..||||||.|+.
T Consensus       175 ~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e-------~~~lLl~ag~~-------~~~~D~dgWtPlHAAA~  240 (527)
T KOG0505|consen  175 QTMLDDARQWLNAGAELDARHARGATALHVAAANGYTE-------VAALLLQAGYS-------VNIKDYDGWTPLHAAAH  240 (527)
T ss_pred             HHHHHHHHHHHhccccccccccccchHHHHHHhhhHHH-------HHHHHHHhccC-------cccccccCCCcccHHHH
Confidence                                   455555555544322       22222222222       67789999999999999


Q ss_pred             cCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766         103 EGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus       103 ~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .+..+++++|+++|++++.....|.+|+.+|.
T Consensus       241 Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  241 WGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             hhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            99999999999999999999999999999874

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.78  E-value=4.9e-19  Score=124.30  Aligned_cols=111  Identities=21%  Similarity=0.210  Sum_probs=88.4

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHcCCCccccc--------------cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q psy8766          11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKD--------------INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG   76 (135)
Q Consensus        11 ~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (135)
                      ..|.||||+|+..++.++++.|+++|++++.++              +.|.||||.|+..++.++++++       ++.+
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lL-------l~~g  198 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL-------SEDP  198 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHH-------hcCC
Confidence            569999999999999999999999999998653              3689999999999985554444       4444


Q ss_pred             cchhhhhhhhhccCCCCCcHHHHHHhcC---------cHHHHHHHHHcCCCe-------eecCCCCCCcchhccC
Q psy8766          77 EASQGIQNLLNEKDKTGCSPLHYASREG---------HIISLENLINLGACI-------NLKNNSNESPLHLAAR  135 (135)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~ll~~g~~~-------~~~~~~g~tpl~~a~~  135 (135)
                      .+       ++..+..|+||||+|+..+         ...+.++++..++..       ++.|..|.|||++|++
T Consensus       199 ad-------in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~  266 (743)
T TIGR00870       199 AD-------ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAK  266 (743)
T ss_pred             cc-------hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhh
Confidence            43       6778899999999999886         234556666655443       6779999999999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514|consensus

Probab=99.78  E-value=1.1e-18  Score=109.75  Aligned_cols=116  Identities=22%  Similarity=0.278  Sum_probs=97.5

Q ss_pred             CCccccccCCChHHHHHHHhC-----CHHHHHHHHHcCCCcccc-ccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc
Q psy8766           4 ADLNVLDKEKRSPLLLAASRG-----GWKTVLTLVRNKANILLK-DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~-----~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (135)
                      +|+|.++.-|.||+++++...     +.++|..|++.| |+|.+ ...|+|+|.+|+..|+.++++.++.+..+      
T Consensus       293 C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd------  365 (452)
T KOG0514|consen  293 CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD------  365 (452)
T ss_pred             ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC------
Confidence            588999999999999876653     567788888875 45554 56899999999999987777766665554      


Q ss_pred             chhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc-CCCeeecCCCCCCcchhcc
Q psy8766          78 ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINL-GACINLKNNSNESPLHLAA  134 (135)
Q Consensus        78 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~tpl~~a~  134 (135)
                              ++.+|..|-|+|++|+++|+.+++++|+.. ++|+.+.|.+|.|+|.+|.
T Consensus       366 --------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  366 --------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             --------CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence                    888999999999999999999999999965 8999999999999999875

>KOG4214|consensus

Probab=99.74  E-value=1.5e-17  Score=85.61  Aligned_cols=102  Identities=25%  Similarity=0.244  Sum_probs=87.2

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCC
Q psy8766          15 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC   94 (135)
Q Consensus        15 tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (135)
                      --+.|++++|.++.|+..+..|.+++. ...|++|||+|+-+|+..+.+++..+...              ++.+|++|-
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~-~~ggR~plhyAAD~GQl~ilefli~iGA~--------------i~~kDKygI   68 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE-IYGGRTPLHYAADYGQLSILEFLISIGAN--------------IQDKDKYGI   68 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH-HhCCcccchHhhhcchHHHHHHHHHhccc--------------cCCccccCC
Confidence            456799999999999999999988865 34899999999999997777776665544              788999999


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcch
Q psy8766          95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLH  131 (135)
Q Consensus        95 t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~  131 (135)
                      |||..|++.|+.+++++|++.|++-..+-.+|.+.+.
T Consensus        69 TPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   69 TPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             cHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence            9999999999999999999999998888777766554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.73  E-value=1.1e-17  Score=80.32  Aligned_cols=53  Identities=34%  Similarity=0.418  Sum_probs=44.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHH
Q psy8766          13 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA   65 (135)
Q Consensus        13 g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~   65 (135)
                      |.||||+|+..|+.+++++|++.|.+++.+|..|.||||+|+..|+.++++++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            78999999999999999999999999999999999999999999987777665

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=3.8e-17  Score=99.79  Aligned_cols=118  Identities=33%  Similarity=0.377  Sum_probs=100.5

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCC-----CchHHHHHHHHHHHhcCCcchhh
Q psy8766           7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG-----GHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         7 n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +..+..+.++++.++..+..+++++++..|++++.++..|.||||+|+..++     .++++.++.....    . .   
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~----~-~---  138 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD----L-D---  138 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC----C-C---
Confidence            3445668899999999999999999999999999999999999999999997     5555544443331    0 1   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                         .....+..|+||||+|+..|+.++++.|++.|++++.++..|.|++++|+.
T Consensus       139 ---~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~  189 (235)
T COG0666         139 ---VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAK  189 (235)
T ss_pred             ---CccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcc
Confidence               156678999999999999999999999999999999999999999999863

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.72  E-value=3e-17  Score=113.75  Aligned_cols=105  Identities=23%  Similarity=0.206  Sum_probs=91.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCC
Q psy8766          15 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC   94 (135)
Q Consensus        15 tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (135)
                      ..|+.|+..|+.+.++.|++.|++++.+|..|.||||+|+..|+.+++++++.       .+..       ++..+..|.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~-------~Gad-------vn~~d~~G~  149 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLE-------FGAD-------PTLLDKDGK  149 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHH-------CCCC-------CCCCCCCCC
Confidence            35889999999999999999999999999999999999999998666665554       3333       678889999


Q ss_pred             cHHHHHHhcCcHHHHHHHHHc-------CCCeeecCCCCCCcchhc
Q psy8766          95 SPLHYASREGHIISLENLINL-------GACINLKNNSNESPLHLA  133 (135)
Q Consensus        95 t~l~~a~~~~~~~~~~~ll~~-------g~~~~~~~~~g~tpl~~a  133 (135)
                      ||||+|+..++.+++++|+++       |++++..+..|.+|+..+
T Consensus       150 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        150 TPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            999999999999999999998       888888888888777643

>KOG3676|consensus

Probab=99.68  E-value=9.4e-17  Score=109.44  Aligned_cols=111  Identities=22%  Similarity=0.173  Sum_probs=98.4

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHcCCCcccc-----------------------ccCCchHHHHHHHhCCCchHHHHHH
Q psy8766          11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLK-----------------------DINRRNILHLLVLNGGGHIKEFAEE   67 (135)
Q Consensus        11 ~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~-----------------------~~~g~t~l~~a~~~~~~~~~~~~~~   67 (135)
                      ..|.||||+|+.+.+.++|+.|++.|+|++.+                       =+.|+.||..|+-.++++++.++.+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            57999999999999999999999999998764                       1367899999999999877777776


Q ss_pred             HHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC--eeecCCCCCCcchhccC
Q psy8766          68 VAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC--INLKNNSNESPLHLAAR  135 (135)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~--~~~~~~~g~tpl~~a~~  135 (135)
                      .       +++       ++.+|..|+|.||..+.+-..++.+.++++|++  ..++|+.|-|||.+|++
T Consensus       262 ~-------gAd-------~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  262 H-------GAD-------PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             c-------CCC-------CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH
Confidence            3       333       899999999999999999889999999999999  99999999999999975

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.67  E-value=4.9e-17  Score=78.52  Aligned_cols=48  Identities=42%  Similarity=0.650  Sum_probs=33.0

Q ss_pred             hhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                      ++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+++|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            678899999999999999999999999999999999999999999987

>KOG0507|consensus

Probab=99.67  E-value=1.4e-16  Score=107.99  Aligned_cols=125  Identities=22%  Similarity=0.333  Sum_probs=97.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      ++..+|..+..|.||||.|+..||.+++.+|+.+|+++..+|..+.|+|-.|++.|...++..+... .+......    
T Consensus       104 q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~----  178 (854)
T KOG0507|consen  104 QTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSL----  178 (854)
T ss_pred             cccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcc----
Confidence            3566788999999999999999999999999999999999999999999999999998888777765 22111100    


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                       ..-...++..+.+|+|+|+.+|+.++++.|++.|.+++..... .|+||.|
T Consensus       179 -~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~-gtalhea  228 (854)
T KOG0507|consen  179 -RVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTED-GTALHEA  228 (854)
T ss_pred             -cCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccccc-chhhhhH
Confidence             0002334556778889999999999999999999888887654 4666655

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.67  E-value=3.1e-16  Score=95.72  Aligned_cols=101  Identities=32%  Similarity=0.437  Sum_probs=87.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCC-----HHHHHHHHHcCC---CccccccCCchHHHHHHHhCCCchHHHHHHHHHHHh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGG-----WKTVLTLVRNKA---NILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL   73 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~-----~~~~~~Ll~~g~---~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~   73 (135)
                      .|++++.++..|.||||+|+..++     .++++.|++.|+   ..+.++..|.||||+|+..++..++..+...     
T Consensus        95 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~-----  169 (235)
T COG0666          95 SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-----  169 (235)
T ss_pred             cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc-----
Confidence            588999999999999999999999     999999999999   6667799999999999999986555444443     


Q ss_pred             cCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8766          74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG  116 (135)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g  116 (135)
                        +..       ++..+..|.|+++.|+..++.++++.+++.+
T Consensus       170 --~~~-------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         170 --GAD-------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             --CCC-------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence              333       5667899999999999999999999999864

>KOG0195|consensus

Probab=99.66  E-value=4.1e-16  Score=96.04  Aligned_cols=107  Identities=27%  Similarity=0.291  Sum_probs=85.6

Q ss_pred             CCCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         1 ~~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      ++|+.+|..+....||||+|+..||-++++.|++..+|++..+..|.|||||||..|.       ..+..+++..++.  
T Consensus        55 ~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy-------dqiaedli~~ga~--  125 (448)
T KOG0195|consen   55 SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY-------DQIAEDLISCGAA--  125 (448)
T ss_pred             hcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH-------HHHHHHHHhccce--
Confidence            4799999999888899999999999999999999999999999999999999999985       4455566666655  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeee
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL  121 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~  121 (135)
                           ++..++.|.|||-.|-.--...+.+..-++|-.++.
T Consensus       126 -----v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  126 -----VNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             -----eeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence                 788899999999876433333333444455666553

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.62  E-value=2.1e-15  Score=79.74  Aligned_cols=62  Identities=34%  Similarity=0.392  Sum_probs=53.6

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      |.+++.    |.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++.+.
T Consensus        20 ~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   81 (89)
T PF12796_consen   20 GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEH   81 (89)
T ss_dssp             TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred             cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            455554    88999999999999999999999999999999999999999999987766666543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG1710|consensus

Probab=99.62  E-value=2.6e-15  Score=92.30  Aligned_cols=96  Identities=21%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCCcccc-ccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLK-DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      ++|.+|..|.+||..|++.|+.++++.|++.|+|+|.. +..++|||+.|+.+|+.++...+.+.       +..     
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda-------Ga~-----  104 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA-------GAR-----  104 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhc-------cCc-----
Confidence            37899999999999999999999999999999999875 67899999999999997765555543       333     


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLIN  114 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~  114 (135)
                        ....+.-|+|+-.+|+.-|+.+++..+-.
T Consensus       105 --~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  105 --MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             --cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence              56677889999999999999998877644

>KOG4214|consensus

Probab=99.60  E-value=1.2e-15  Score=78.61  Aligned_cols=69  Identities=26%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV   71 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~   71 (135)
                      .|.|+|..- .|++|||+|+-.|..+++.+|+..|++++.+|+.|-|||..|+..|+..++++++.....
T Consensus        24 ~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAd   92 (117)
T KOG4214|consen   24 EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGAD   92 (117)
T ss_pred             ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcc
Confidence            356777664 899999999999999999999999999999999999999999999998777777665443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=1.4e-14  Score=80.78  Aligned_cols=98  Identities=33%  Similarity=0.518  Sum_probs=82.9

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .|.+++..+..|.+|+|.|+..+..+++++|++.+++++..+..+.||+|+|+..++.++++++....       ..   
T Consensus        29 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~-------~~---   98 (126)
T cd00204          29 NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG-------AD---   98 (126)
T ss_pred             cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-------CC---
Confidence            45666888999999999999999999999999999999999999999999999999866555555432       11   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLI  113 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll  113 (135)
                          ++..+..+.||+++|...++.+++++|+
T Consensus        99 ----~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          99 ----VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ----CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                4556778899999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.57  E-value=6.4e-15  Score=102.36  Aligned_cols=67  Identities=28%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      .|+|+|.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++++..
T Consensus       104 ~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        104 GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            5899999999999999999999999999999999999999999999999999999998888877765

>KOG3676|consensus

Probab=99.56  E-value=6.4e-15  Score=100.71  Aligned_cols=130  Identities=16%  Similarity=0.120  Sum_probs=93.8

Q ss_pred             CccccccCCChHHHHHHHh---CCHHHHHHHHHcC----CCcc-ccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q psy8766           5 DLNVLDKEKRSPLLLAASR---GGWKTVLTLVRNK----ANIL-LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG   76 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~---~~~~~~~~Ll~~g----~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (135)
                      +++.+...|.|.||.|..+   ++.++++.|++.-    -++. .-.+.|.||||+|+.+.+.+.+..+....++...+-
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh
Confidence            5667778999999999774   4568899999752    1222 235799999999999998777777776554433221


Q ss_pred             cchhhhhh---------hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          77 EASQGIQN---------LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        77 ~~~~~~~~---------~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ...-....         .....-..|+.||..|+-.++.+++++|+++|+|++.+|..|+|.||..+
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lV  281 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLV  281 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHH
Confidence            00000000         00011235899999999999999999999999999999999999999754

>KOG0515|consensus

Probab=99.56  E-value=1.3e-14  Score=95.53  Aligned_cols=101  Identities=24%  Similarity=0.258  Sum_probs=85.0

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcH
Q psy8766          17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSP   96 (135)
Q Consensus        17 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~   96 (135)
                      |.-|+..|.++.|+..+..--|+...|..|-|+||-|+-.|+.++++|+++....              ++..|..||||
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan--------------VNa~DSdGWTP  619 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN--------------VNAADSDGWTP  619 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc--------------ccCccCCCCch
Confidence            3458889999999999988888888899999999999999998888887765544              78899999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCeeecCC-CCCCcch
Q psy8766          97 LHYASREGHIISLENLINLGACINLKNN-SNESPLH  131 (135)
Q Consensus        97 l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~  131 (135)
                      ||+|+.+++..+++.|++.|+.+.+... ++.|+..
T Consensus       620 LHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  620 LHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAE  655 (752)
T ss_pred             hhhhhhcCchHHHHHHHhccceEEeeecccccchhh
Confidence            9999999999999999999998876533 3556554

>KOG0515|consensus

Probab=99.51  E-value=2.6e-14  Score=94.19  Aligned_cols=97  Identities=18%  Similarity=0.063  Sum_probs=73.4

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQN   84 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
                      |+...+..|.|+||-|+-.||+++|+||++.|+++|..|.+|+||||+|+..++..++..+.+....++..         
T Consensus       575 DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAs---------  645 (752)
T KOG0515|consen  575 DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFAS---------  645 (752)
T ss_pred             CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEee---------
Confidence            56677889999999999999999999999999999999999999999999999866665555543332211         


Q ss_pred             hhhccCCCCCcHHHHH--HhcCcHHHHHHHHH
Q psy8766          85 LLNEKDKTGCSPLHYA--SREGHIISLENLIN  114 (135)
Q Consensus        85 ~~~~~~~~~~t~l~~a--~~~~~~~~~~~ll~  114 (135)
                          .-.++.|+.--+  .+.|...+.++|..
T Consensus       646 ----TlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  646 ----TLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             ----ecccccchhhhcchhhhhHHHHHHHHHH
Confidence                113455655433  34577777777763

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=7.6e-14  Score=66.91  Aligned_cols=54  Identities=33%  Similarity=0.533  Sum_probs=39.3

Q ss_pred             CchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHH
Q psy8766          46 RRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI  113 (135)
Q Consensus        46 g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll  113 (135)
                      |.||||+|+..|+.++++++.+.       +..       ++..|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-------~~d-------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-------GAD-------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-------TSG-------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-------CCC-------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999986665555533       333       6778999999999999999999999986

...

>KOG1710|consensus

Probab=99.43  E-value=4.3e-13  Score=82.73  Aligned_cols=110  Identities=23%  Similarity=0.283  Sum_probs=96.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCC
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK   91 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (135)
                      .-..||..++..+..+....|+..--+++.+|..|.++|..|+..|+...++.+++...+.             -...+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDv-------------N~~qhg   77 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADV-------------NDKQHG   77 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCc-------------Cccccc
Confidence            3468999999999999999999887789999999999999999999988777777665552             234567


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .+.||||.|+..|+.+++.+|++.|+.+...+.-|+|+-++|+
T Consensus        78 ~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAA  120 (396)
T KOG1710|consen   78 TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAA  120 (396)
T ss_pred             ccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHH
Confidence            8899999999999999999999999999999999999988774

>KOG4369|consensus

Probab=99.41  E-value=1.4e-13  Score=97.71  Aligned_cols=109  Identities=27%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCC
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK   91 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (135)
                      +-.|+|-.||..|+.|.+..|+..|+++..+|+.|++||.+|+..|+..+++.+......+             --+.|.
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~v-------------eaQsdr  822 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV-------------EAQSDR  822 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhh-------------hhhccc
Confidence            3458888999999999999999999999999999999999999988877777766654443             123445


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                      .+.|+|.+||..|..+++++|+..|++...++-...|||.+|
T Consensus       823 tkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla  864 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLA  864 (2131)
T ss_pred             ccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhh
Confidence            555666666666666666666666666655555556665554

>PF13606 Ank_3: Ankyrin repeat

Probab=99.41  E-value=5.2e-13  Score=55.87  Aligned_cols=29  Identities=34%  Similarity=0.447  Sum_probs=27.7

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCcc
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANIL   40 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~   40 (135)
                      +|+||||+||..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999986

>KOG4369|consensus

Probab=99.39  E-value=2e-13  Score=96.93  Aligned_cols=118  Identities=26%  Similarity=0.382  Sum_probs=88.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCcccc-ccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLK-DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|+++..+|+.|.+||.+|+..||..+|+.|+..-+++... |+.+.|+|.+|+..|..+++++++....-         
T Consensus       779 rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gan---------  849 (2131)
T KOG4369|consen  779 RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGAN---------  849 (2131)
T ss_pred             hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcc---------
Confidence            68999999999999999999999999999999998888764 78899999999999999988888765432         


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeec--CCCCCCcchhc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK--NNSNESPLHLA  133 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~--~~~g~tpl~~a  133 (135)
                           -+.++-...|||.+|..-|..+++..|+.+|+.++.+  .+.|-+||++|
T Consensus       850 -----kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmla  899 (2131)
T KOG4369|consen  850 -----KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLA  899 (2131)
T ss_pred             -----ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhh
Confidence                 2334444556666666666666666666666555544  33455555544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.37  E-value=1.5e-12  Score=55.96  Aligned_cols=32  Identities=34%  Similarity=0.452  Sum_probs=30.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCccccc
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANILLKD   43 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~   43 (135)
                      +|.||||+|+..++.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58999999999999999999999999999876

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=99.36  E-value=4.8e-13  Score=92.47  Aligned_cols=82  Identities=23%  Similarity=0.309  Sum_probs=56.5

Q ss_pred             ccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccC-CCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy8766          39 ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKD-KTGCSPLHYASREGHIISLENLINLGA  117 (135)
Q Consensus        39 ~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~~g~  117 (135)
                      .+.+|..|+|+||+++..+...+++++++...+              +..+| ..|+||||-|+++|+++++-.|+.+|.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid--------------v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~  110 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID--------------VFVQDEESGYTALHRAIYYGNIDCASLLLSKGR  110 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCce--------------eeeccccccchHhhHhhhhchHHHHHHHHhcCC
Confidence            556677777777777766665565655554333              22233 467788888888888888888888888


Q ss_pred             CeeecCCCCCCcchhcc
Q psy8766         118 CINLKNNSNESPLHLAA  134 (135)
Q Consensus       118 ~~~~~~~~g~tpl~~a~  134 (135)
                      .+.++|++|..||+..+
T Consensus       111 SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen  111 SLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             ceEEecccCCCHHHHHh
Confidence            88888888888877654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.30  E-value=4.5e-12  Score=53.02  Aligned_cols=30  Identities=37%  Similarity=0.609  Sum_probs=27.9

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCeee
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACINL  121 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~  121 (135)
                      .|+||||+|++.|+.+++++|+++|+|++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.26  E-value=1e-11  Score=53.30  Aligned_cols=33  Identities=42%  Similarity=0.690  Sum_probs=30.8

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCC
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACINLKNN  124 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~  124 (135)
                      .|+||||+|+..++.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            488999999999999999999999999998864

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=99.19  E-value=3.1e-11  Score=79.04  Aligned_cols=93  Identities=20%  Similarity=0.239  Sum_probs=84.5

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccC
Q psy8766          11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKD   90 (135)
Q Consensus        11 ~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (135)
                      .++..++.+|++.|....++.+.-.|.|++.+|++.+|.||.|+..|+..++++++..++..             ...+|
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-------------~~~kD  570 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD-------------PDPKD  570 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCC-------------CChhh
Confidence            45678899999999999999999999999999999999999999999999999999877653             57789


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8766          91 KTGCSPLHYASREGHIISLENLINLG  116 (135)
Q Consensus        91 ~~~~t~l~~a~~~~~~~~~~~ll~~g  116 (135)
                      .+|+|||--|...++.+++++|-+.-
T Consensus       571 Rw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  571 RWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             ccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            99999999999999999999998753

>KOG0782|consensus

Probab=99.11  E-value=2.7e-10  Score=76.57  Aligned_cols=106  Identities=21%  Similarity=0.299  Sum_probs=84.7

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcH
Q psy8766          17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSP   96 (135)
Q Consensus        17 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~   96 (135)
                      |.-|+..+.+-.++.+...|.+...++.+..+.||+|+..|+.+++++++...+.-            +++..+..|+|+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e------------lld~~de~get~  937 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE------------LLDMADETGETA  937 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH------------HHHHHhhhhhHH
Confidence            44566666666666666678888888888889999999999988888888765442            256677889999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          97 LHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        97 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ||-|+..++-.++++|++.|+.+..+|..|.||-..|-
T Consensus       938 lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraq  975 (1004)
T KOG0782|consen  938 LHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQ  975 (1004)
T ss_pred             HHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHH
Confidence            99999999999999999999999888999999877653

>KOG0506|consensus

Probab=99.10  E-value=4.1e-11  Score=78.49  Aligned_cols=72  Identities=25%  Similarity=0.219  Sum_probs=66.0

Q ss_pred             CCCCCccccccCCChHHHHHHHhCCHHHHHHHHH-cCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHH
Q psy8766           1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR-NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF   72 (135)
Q Consensus         1 ~~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~   72 (135)
                      +.|.|++.+|.+.+|+||.||..|+.+++++|++ .+.+++.+|++|+|||.-|...++.++++++.+.....
T Consensus       527 l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~~y  599 (622)
T KOG0506|consen  527 LQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQYPY  599 (622)
T ss_pred             HhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhccc
Confidence            3689999999999999999999999999999996 59999999999999999999999999999888766543

>KOG0818|consensus

Probab=99.07  E-value=5.5e-10  Score=73.72  Aligned_cols=67  Identities=21%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             CCCCccccc-cCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH
Q psy8766           2 TGADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus         2 ~g~~~n~~~-~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      -|+++|+.+ ..|.||||.|++.|...-++.|+-+|+|+...|..|.||+.+|...|+.++.+.+.++
T Consensus       155 lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  155 LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            389999886 4789999999999999999999999999999999999999999999998887776654

>KOG2384|consensus

Probab=99.02  E-value=9.9e-10  Score=64.17  Aligned_cols=67  Identities=19%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcC-CCccccccCCchHHHHHHHhCCCchHHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      ++.+||.+|..|+|+++.|+..|..+.+.+|+.+| +.+...|..+.+.+.+|-..|...++..+.+.
T Consensus         1 se~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    1 SEGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            47899999999999999999999999999999999 89999999999999999999876655555543

>KOG0818|consensus

Probab=98.97  E-value=3.9e-09  Score=69.82  Aligned_cols=94  Identities=22%  Similarity=0.285  Sum_probs=75.7

Q ss_pred             ccccCCChH------HHHHHHhCCHHHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           8 VLDKEKRSP------LLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         8 ~~~~~g~tp------l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      .+|.+|.+.      ||..++.++.+..-.||..|+++|.-+ ..|.||||.|+..|+..-+++       +.-.|+.  
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~El-------L~vYGAD--  192 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAEL-------LAVYGAD--  192 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhH-------HhhccCC--
Confidence            456666654      899999999999999999999998765 689999999999997443333       3334444  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINL  115 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  115 (135)
                           +...|..|.||+-+|-..|+.++.+.|++.
T Consensus       193 -----~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  193 -----PGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             -----CCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence                 788899999999999999998888877764

>KOG0782|consensus

Probab=98.96  E-value=2.8e-09  Score=71.83  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=83.9

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCC--ccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcch
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN--ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS   79 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
                      +|.++-.++.+-.+.||+|+..|+-++|++++++|..  .+..+..|.|.||-|+-.++..+..       .+...+.. 
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~-------~lvdagas-  959 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQ-------LLVDAGAS-  959 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHH-------HHHhcchh-
Confidence            5888889999999999999999999999999999864  5667899999999999888754444       44444444 


Q ss_pred             hhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8766          80 QGIQNLLNEKDKTGCSPLHYASREGHIISLENLINL  115 (135)
Q Consensus        80 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  115 (135)
                            +...|..|.||-.-|-..|+.++.-+|-.+
T Consensus       960 ------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  960 ------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             ------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence                  677889999999999999999999988754

>KOG0522|consensus

Probab=98.95  E-value=3.4e-09  Score=70.44  Aligned_cols=67  Identities=22%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHH
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA   69 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~   69 (135)
                      +..++..|..|+||||+|+.-|+.+.++.|+..|+++..+|..|.+|||-|+..|+..++..++...
T Consensus        45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            3467888999999999999999999999999999999999999999999999999987665555433

>KOG0705|consensus

Probab=98.84  E-value=1.6e-08  Score=68.08  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=68.1

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCC----ccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCC
Q psy8766          17 LLLAASRGGWKTVLTLVRNKAN----ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKT   92 (135)
Q Consensus        17 l~~a~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (135)
                      |.-|........+-.||.+|-.    -...+.+|+|+||+|++.|+.....+++....+              +...|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d--------------v~~rda~  693 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD--------------VMARDAH  693 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc--------------ceecccC
Confidence            3445666667777788877632    234467889999999999987666665554433              6778899


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCe
Q psy8766          93 GCSPLHYASREGHIISLENLINLGACI  119 (135)
Q Consensus        93 ~~t~l~~a~~~~~~~~~~~ll~~g~~~  119 (135)
                      |+|+|.+|-..|..+++.+|+++|+..
T Consensus       694 g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  694 GRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             CchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            999999999999999999999998764

>KOG0705|consensus

Probab=98.75  E-value=1.7e-08  Score=68.02  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=52.3

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHH
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE   67 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~   67 (135)
                      +.+|+|+||+||..|+....++|+=+|+|+..+|..|+|+|.||.+.|..++++.++.
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq  715 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQ  715 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999997666665554

>KOG3609|consensus

Probab=98.74  E-value=1.4e-08  Score=70.96  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=74.1

Q ss_pred             CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      .++|.+|.-|+++|+.|..+.+.+++++|++++...       ..+|.+|+..+..+.++.+.......-+....    .
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~----~  121 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERS----G  121 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccc----c
Confidence            567888888888888888888888888888887655       23677777777666666665543221111100    0


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeee
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL  121 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~  121 (135)
                      ..-...-.-+-||+.+||..++.+++++|+++|+.+..
T Consensus       122 d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  122 DANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             ccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            00111223578999999999999999999999987644

>KOG0522|consensus

Probab=98.72  E-value=2.5e-08  Score=66.45  Aligned_cols=87  Identities=25%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             hHHHHHHHhCCHHHHHHHH--HcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCC
Q psy8766          15 SPLLLAASRGGWKTVLTLV--RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKT   92 (135)
Q Consensus        15 tpl~~a~~~~~~~~~~~Ll--~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (135)
                      .|+|++.....++-...++  +....++.+|..|.||||+|+..|+...       ...++..++.       +..++..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~-------a~~Ll~a~Ad-------v~~kN~~   87 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEA-------ARILLSAGAD-------VSIKNNE   87 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHH-------HHHHHhcCCC-------ccccccc
Confidence            3489998888877655544  3467788899999999999999997443       3444444444       7889999


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHc
Q psy8766          93 GCSPLHYASREGHIISLENLINL  115 (135)
Q Consensus        93 ~~t~l~~a~~~~~~~~~~~ll~~  115 (135)
                      |++|||.|+..|+..++..++.+
T Consensus        88 gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   88 GWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             cccHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999998877666643

>KOG0783|consensus

Probab=98.71  E-value=1.7e-08  Score=70.74  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=46.6

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCCCcccccc-CCchHHHHHHHhCCCchHHHHHHH
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI-NRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      .|.+|..|+|+||+++..+..+++++|+++|++++.+|+ .|.||||-|+.+|+.+++..++..
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~  108 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK  108 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc
Confidence            466777777777777777777777777777777777764 677777777777777766666554

>KOG0521|consensus

Probab=98.50  E-value=1.4e-07  Score=67.02  Aligned_cols=95  Identities=24%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             CCCccc--cccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           3 GADLNV--LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         3 g~~~n~--~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      |+++|-  .-..|.|+||.|+..+...++++|++.|++++.++..|++|+|.+...|+......+..       .++.  
T Consensus       644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-------~~a~--  714 (785)
T KOG0521|consen  644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLK-------RGAD--  714 (785)
T ss_pred             hhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcc-------cccc--
Confidence            444443  33578999999999999999999999999999999999999999999997554333333       4433  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHH
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLEN  111 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  111 (135)
                           .+..+..|.+|+.+|....+.+.+-+
T Consensus       715 -----~~a~~~~~~~~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  715 -----PNAFDPDGKLPLDIAMEAANADIVLL  740 (785)
T ss_pred             -----ccccCccCcchhhHHhhhccccHHHH
Confidence                 57788899999999977765555433

>KOG0520|consensus

Probab=98.35  E-value=5.6e-07  Score=64.45  Aligned_cols=100  Identities=21%  Similarity=0.203  Sum_probs=73.8

Q ss_pred             ccccCCChHHHHHHHhCCHHHHHHHHHc-CCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhh
Q psy8766           8 VLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL   86 (135)
Q Consensus         8 ~~~~~g~tpl~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (135)
                      .....|.+.+|+++..+..-.++.+++. |-.....+.+|...+|+++..|-.-       ....+...+..       +
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ew-------A~ll~~~~~~a-------i  634 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEW-------AFLPISADGVA-------I  634 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCce-------eEEEEeecccc-------c
Confidence            3456788999999999998889999986 6666777888888888866555211       11111112222       6


Q ss_pred             hccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeee
Q psy8766          87 NEKDKTGCSPLHYASREGHIISLENLINLGACINL  121 (135)
Q Consensus        87 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~  121 (135)
                      +.+|..|+||||+|+.+|+..++..|++.|++...
T Consensus       635 ~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  635 DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGA  669 (975)
T ss_pred             ccccCCCCcccchHhhcCHHHHHHHHHHhcccccc
Confidence            77899999999999999999999999988776543

>KOG0511|consensus

Probab=98.32  E-value=1.6e-06  Score=56.18  Aligned_cols=56  Identities=25%  Similarity=0.174  Sum_probs=50.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHH
Q psy8766          16 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV   71 (135)
Q Consensus        16 pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~   71 (135)
                      -|..||+.|..+.+++|++.|.++|..|+...+||.+|+..|+.++++++.+..+.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            36789999999999999999999999999999999999999998888888776554

>smart00248 ANK ankyrin repeats

Probab=98.16  E-value=5.9e-06  Score=33.24  Aligned_cols=29  Identities=38%  Similarity=0.519  Sum_probs=25.9

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCcc
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANIL   40 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~   40 (135)
                      .|.||+|+|+..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521|consensus

Probab=98.16  E-value=8.4e-07  Score=63.19  Aligned_cols=77  Identities=29%  Similarity=0.350  Sum_probs=65.4

Q ss_pred             cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecC
Q psy8766          44 INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN  123 (135)
Q Consensus        44 ~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~  123 (135)
                      ..|.|+||.|+..+.....+++..       .+..       ++..+..|++|+|.+...|+...+..++++|++.++.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~-------~ga~-------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ-------NGAD-------VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh-------cCCc-------chhhhccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            467899999999996555444444       3333       78899999999999999999999999999999999999


Q ss_pred             CCCCCcchhcc
Q psy8766         124 NSNESPLHLAA  134 (135)
Q Consensus       124 ~~g~tpl~~a~  134 (135)
                      ..|.+|+.+|.
T Consensus       720 ~~~~~~l~~a~  730 (785)
T KOG0521|consen  720 PDGKLPLDIAM  730 (785)
T ss_pred             ccCcchhhHHh
Confidence            99999999874

>KOG2384|consensus

Probab=98.00  E-value=1.9e-05  Score=46.73  Aligned_cols=70  Identities=13%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8766          36 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINL  115 (135)
Q Consensus        36 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  115 (135)
                      +.+++.+|..|+|++.+|+..|+.+.+.++......      .       +...+..+.+++.+|-+.|..+++..|.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a------~-------vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVA------F-------VGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcc------c-------ccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            468899999999999999999976655555443311      1       667788899999999999999999998876


Q ss_pred             CCC
Q psy8766         116 GAC  118 (135)
Q Consensus       116 g~~  118 (135)
                      -.+
T Consensus        69 ~~e   71 (223)
T KOG2384|consen   69 DRE   71 (223)
T ss_pred             hcc
Confidence            433

>KOG2505|consensus

Probab=97.98  E-value=6.6e-06  Score=55.10  Aligned_cols=45  Identities=24%  Similarity=0.163  Sum_probs=41.3

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHH
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV   54 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~   54 (135)
                      +....|+||+|+.+|.-+++.+||+.|+|+..+|..|+||..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            344679999999999999999999999999999999999998876

>smart00248 ANK ankyrin repeats

Probab=97.97  E-value=2e-05  Score=31.59  Aligned_cols=29  Identities=38%  Similarity=0.641  Sum_probs=25.8

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCee
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACIN  120 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~  120 (135)
                      .+.||+|+++..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36899999999999999999999988664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.90  E-value=1.3e-05  Score=53.74  Aligned_cols=45  Identities=24%  Similarity=0.381  Sum_probs=40.4

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +..--|+||+|+..|...++.+||+.|+|+..+|..|.||..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            334568999999999999999999999999999999999998764

>KOG0511|consensus

Probab=97.89  E-value=5.8e-05  Score=49.29  Aligned_cols=71  Identities=21%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             chHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCC
Q psy8766          47 RNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN  126 (135)
Q Consensus        47 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g  126 (135)
                      +.-|..|++.|..+.++.       +++.+.+       ++.+|.....||.+|+-.|+.+++++|+++|+-.+.-.-.|
T Consensus        37 f~elceacR~GD~d~v~~-------LVetgvn-------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G  102 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRY-------LVETGVN-------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDG  102 (516)
T ss_pred             hHHHHHHhhcccHHHHHH-------HHHhCCC-------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCc
Confidence            556888999997554444       4444444       88999999999999999999999999999999766555566


Q ss_pred             CCcch
Q psy8766         127 ESPLH  131 (135)
Q Consensus       127 ~tpl~  131 (135)
                      ..+++
T Consensus       103 ~RC~Y  107 (516)
T KOG0511|consen  103 DRCHY  107 (516)
T ss_pred             chhhh
Confidence            66554

>KOG0520|consensus

Probab=97.72  E-value=6.8e-05  Score=54.34  Aligned_cols=67  Identities=25%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccc------cccCCchHHHHHHHhCCCchHHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL------KDINRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      .|..++.+|..|+||||||+..|+..++..|++.|++...      ..-.|.|+-..|...|+..+..++.+.
T Consensus       630 ~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  630 DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            4778999999999999999999999999999987765433      345688898898888888877776654

>KOG3609|consensus

Probab=96.96  E-value=0.0026  Score=45.72  Aligned_cols=100  Identities=24%  Similarity=0.199  Sum_probs=74.2

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHc----CCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          14 RSPLLLAASRGGWKTVLTLVRN----KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        14 ~tpl~~a~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      .--...|+..|+.-.++..++.    ..+++..|.-|+++|+.|+...+.++.+++.....                   
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~-------------------   86 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS-------------------   86 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc-------------------
Confidence            3345689999999999998864    26789999999999999999988665555543211                   


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCe----------eecCCCCCCcchhcc
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACI----------NLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~----------~~~~~~g~tpl~~a~  134 (135)
                        .-..+|.+|+..+..++++.++.+-...          ...-..+-||+.+|+
T Consensus        87 --~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAA  139 (822)
T KOG3609|consen   87 --EEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAA  139 (822)
T ss_pred             --ccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHH
Confidence              1156899999999999999999873322          122334678998886

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.74  E-value=0.28  Score=24.91  Aligned_cols=48  Identities=13%  Similarity=0.183  Sum_probs=37.4

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH
Q psy8766          14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus        14 ~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      ...+..|+.+|+.|+++.+++.+ .++      ...+..|+.+.+-++++++.+.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34578999999999999999765 222      3578999999888888777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.97  E-value=2  Score=27.01  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHc-C---CCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcc-hhhhhhhhhc
Q psy8766          14 RSPLLLAASRGGWKTVLTLVRN-K---ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEA-SQGIQNLLNE   88 (135)
Q Consensus        14 ~tpl~~a~~~~~~~~~~~Ll~~-g---~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   88 (135)
                      .++|-++..++..+++.+|+.. .   .|+-... .+.--+.++.+..+ ...+    +...++..|-. .+.    .-.
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS~h~-a~~k----vL~~Fi~~Glv~vN~----~F~  249 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLSEHS-ASYK----VLEYFINRGLVDVNK----KFQ  249 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHhhcC-CcHH----HHHHHHhccccccch----hhh
Confidence            3566777777777788887753 1   2221111 12223444433221 1112    22222222211 000    123


Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy8766          89 KDKTGCSPLHYASREGHIISLENLINLGA  117 (135)
Q Consensus        89 ~~~~~~t~l~~a~~~~~~~~~~~ll~~g~  117 (135)
                      +-+.|.|-|--|+..++.+++.+|+++|+
T Consensus       250 ~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  250 KVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             ccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            44679999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.93  E-value=0.68  Score=27.91  Aligned_cols=44  Identities=23%  Similarity=0.192  Sum_probs=35.9

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHH
Q psy8766          17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE   66 (135)
Q Consensus        17 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~   66 (135)
                      |.+|+.+|-+.++...+++|.+++.      +.|..|+.+++..++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            5689999999999999999998864      6889999888766655543

These proteins may be involved in promoting survival of infected macrophages [].

>KOG3836|consensus

Probab=81.00  E-value=0.58  Score=33.29  Aligned_cols=38  Identities=29%  Similarity=0.275  Sum_probs=26.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCc
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI   39 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~   39 (135)
                      .|+.++..|..|.+|+|+++..|..++++.++....+.
T Consensus       418 ~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~  455 (605)
T KOG3836|consen  418 KGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAI  455 (605)
T ss_pred             ccCccchhcccccccccccCCCCCHHHhhhhhhhhhhh
Confidence            45666777777777777777777777777766654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-11
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-11
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-05
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		6e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		8e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		8e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-04
1uoh_A	226	Human Gankyrin Length = 226		6e-04

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  DK+  +PL LAA  G  + V  L++  A++  KD +    LHL    G  H+ 
Sbjct: 25  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG--HL- 81
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N KDK G +PLH A+REGH+  +E L+  GA +N +
Sbjct: 82  ----EIVEVLLKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 123 NNSNESPLHLAAR 135
           +   ++P  LA R
Sbjct: 131 DKFGKTPFDLAIR 143

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  DK+  +PL LAA  G  + V  L++  A++  KD +    LHL    G  H+ 
Sbjct: 25  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG--HL- 81
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N KDK G +PLH A+REGH+  +E L+  GA +N +
Sbjct: 82  ----EIVEVLLKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 123 NNSNESPLHLA 133
           +   ++P  LA
Sbjct: 131 DKFGKTPFDLA 141

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D + R+PL  AA  G  + V  L+   A++  KD + R  LH          K
Sbjct: 27  GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-------K 79
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           E  +E+  + + +G         +N KD  G +PLHYA++EGH   ++ LI+ GA +N  
Sbjct: 80  EGHKEIVKLLISKGAD-------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 123 NNSNESPLHLA 133
           ++   +PL LA
Sbjct: 133 DSDGRTPLDLA 143

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 14  RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
           R+PL LAA  G  + V  L+   A++  KD N R  LHL   NG  H+     EV  + L
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKLLL 55
Query: 74  GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
             G         +N KDK G +PLH A+R GH+  ++ L+  GA +N K+ +  +PLHLA
Sbjct: 56  EAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Query: 134 AR 135
           AR
Sbjct: 109 AR 110

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 17  LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
           LL AA  G    V  L+ N A++  KD +    LHL    G  H+     E+  V L  G
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HL-----EIVEVLLKAG 70
Query: 77  EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                    +N KDK G +PLH A+REGH+  +E L+  GA +N K+    +PLHLAAR
Sbjct: 71  AD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D + R+PL  AA  G  + V  L+   A++  KD + R  LH    NG     
Sbjct: 27  GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG----- 81
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
              +EV  + + +G         +N KD  G +PLH+A+  GH   ++ LI+ GA +N  
Sbjct: 82  --HKEVVKLLISKGAD-------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 123 NNSNESPLHLA 133
           ++   +PL LA
Sbjct: 133 DSDGRTPLDLA 143

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD N  D + R+PL  AA  G  + V  L+   A+   KD + R  LH    NG     
Sbjct: 27  GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG----- 81
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
              +E+  + L +G          N KD  G +PLHYA+  GH   ++ L++ GA  N  
Sbjct: 82  --HKEIVKLLLSKGADP-------NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS 132
Query: 123 NNSNESPLHLA 133
           ++   +PL LA
Sbjct: 133 DSDGRTPLDLA 143

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D + ++PL LAA  G  + V  L+   A+   KD + +  LHL   NG     
Sbjct: 27  GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG----- 81
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
              +EV  + L +G          N KD  G +PLH A+  GH   ++ L++ GA  N  
Sbjct: 82  --HKEVVKLLLSQGADP-------NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Query: 123 NNSNESPLHLA 133
           ++   +PL LA
Sbjct: 133 DSDGRTPLDLA 143

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +D    +PL LAA  G  + V  L+++ A++   D+     LHL  + G  H+ 
Sbjct: 37  GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG--HL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N  D TG +PLH A+ EGH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKYGAD-------VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD N  D   R+PL +AA+ G  + V  L+RN A++   D N    LHL      GH+ 
Sbjct: 25  GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAA--SLGHL- 81
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N KD TG +PL+ A+  GH+  +E L+  GA +N +
Sbjct: 82  ----EIVEVLLKYGAD-------VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 131 DKFGKTAFDIS 141

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D +  +PL LAAS G  + V  L++N A++   D+     LHL      GH+ 
Sbjct: 37  GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAAT--GHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N  D  G +PLH A++ GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKHGAD-------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 83  QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N LN+ D  G SPLH+A REG    +E LI  GA IN+ N  +++PLHLAA
Sbjct: 29  ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 83  QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N LN+ D  G SPLH+A REG    +E LI  GA IN+ N  +++PLHLAA
Sbjct: 24  ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D +  +PL LAA  G  + V  L+++ A++  +D +    LHL   N  GH+ 
Sbjct: 37  GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADN--GHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N +D  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKYGAD-------VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D   ++PL LAA +G  + V  L+++ A++   D      LHL  L   GH+ 
Sbjct: 37  GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALY--GHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N  D  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKNGAD-------VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 45  NRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG 104
           N R  LHL   NG  H+     EV  + L  G         +N KDK G +PLH A+R G
Sbjct: 1   NGRTPLHLAARNG--HL-----EVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNG 46
Query: 105 HIISLENLINLGACINLKNNSNESPLHLAAR 135
           H+  ++ L+  GA +N K+ +  +PLHLAAR
Sbjct: 47  HLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 17  LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
           LL AA  G    V  L+ N A++  +D      LHL      GH+     E+  V L  G
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAA--HFGHL-----EIVEVLLKNG 70
Query: 77  EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                    +N KD  G +PLH A+R GH+  +E L+  GA +N  ++   +PLHLAA+
Sbjct: 71  AD-------VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA  G  + V  L++  A++   D      LHL   NG  H+ 
Sbjct: 37  GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG--HL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N KD  G +PLH A+ +GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKHGAD-------VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 17  LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
           LL AA+ G    V  L+ N A++   D N    LHL   NG         E+  V L  G
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANG-------QLEIVEVLLKNG 62
Query: 77  EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
                    +N  D  G +PLH A+ +GH+  +E L+  GA +N  + +  +PLHLAA
Sbjct: 63  AD-------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAA 113

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA  G  + V  L++N A++   D +    LHL      GH+ 
Sbjct: 37  GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKR--GHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N  D  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKYGAD-------VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +N +D  G +PLH A+R GH+  +E L+  GA +N  + S  +PLHLAA+
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 17  LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
           LL AA  G    V  L+ N A++   D      LHL+V NG   I E   + AA      
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD----- 72
Query: 77  EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                    +N  DK+G +PLH A+  GH+  +E L+  GA +N  +    +PLHLAA 
Sbjct: 73  ---------VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAE 122

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA  G  + V  L++N A++   D      LHL      GH+ 
Sbjct: 37  GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA--HFGHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N KD  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKNGAD-------VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA+ G  + V  L+++ A++   DI     LHL  L   GH+ 
Sbjct: 37  GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALI--GHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N  D  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKHGAD-------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA  G  + V  L+++ A++   D+     LHL      GH+ 
Sbjct: 37  GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAY--WGHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N  D  G +PLH A++ G++  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKNGAD-------VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA+ G  + V  L+++ A++   DI     LHL  L   GH+ 
Sbjct: 37  GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALI--GHL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L  G         +N  D  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLLKHGAD-------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 2   TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
            GA+++   +++R+PL+ AA     + V  L++  A +  KD      LHL    G    
Sbjct: 33  AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH--- 89
Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                EV    L  G+        +N +D  G +P+ +A+   H+  ++ L++ G+ IN+
Sbjct: 90  ----YEVVQYLLSNGQMD------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 122 KNNSNESPLHLAA 134
           ++N     LH AA
Sbjct: 140 RDNEENICLHWAA 152

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA  G  + V  L++N A++   D      LHL    G  H+ 
Sbjct: 37  GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG--HL- 93
Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               EV  V L  G         +N  D  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EVVEVLLKNGAD-------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
           +   ++   ++
Sbjct: 143 DKFGKTAFDIS 153

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N  D  G +PLH A++ GH+  +E L+  GA +N  ++   +PLHLAA
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N  D+ G +PLH A++ GH+  +E L+  GA +N ++N   +PLHLAA
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89  KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           KD+TG + +H A+R G + +L+ L+   A +N+++N    PLHLAA+
Sbjct: 66  KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N  D  G +PLH A++ GH+  +E L+  GA +N ++    +PLHLAA
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89  KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           KD+TG + +H A+R G + +L+ L+   A +N+++N    PLHLAA+
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89  KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           KD+TG + +H A+R G + +L+ L+   A +N+++N    PLHLAA+
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 17  LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
           LL AA  G    V  L+ N A++  +D +    LHL   NG  H+     E+  V L  G
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HL-----EIVEVLLKNG 70
Query: 77  EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
                    +N  D  G +PL  A+  GH+  +E L+  GA +N  +    +PLHLAA
Sbjct: 71  AD-------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N  D  G +PLH A++ GH+  +E L+  GA +N  +    +PLHLAA
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           N +D +G SP+H A+R G + +L+ L+  GA +N+ + +   P+HLA +
Sbjct: 68  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 116

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89  KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           KD+TG + +H A+R G + +L+ L+   A +N+++N    PLHLAA+
Sbjct: 66  KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           N +D +G SP+H A+R G + +L+ L+  GA +N+ + +   P+HLA +
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
           +N KDK G +PLH A+REGH+  +E L+  GA +N ++   ++   ++
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 95  SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +PLH AS  GH+  ++NL+  GA  N+ N   E+PLH+AAR
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR 56

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N  D+ G +PLH A+   H+  +E L+  GA +N  +N   +PLHLAA
Sbjct: 40  VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAA 88

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N  D  G +PLH A+  GH+  +E L+  GA +N   N+  +PLHLAA
Sbjct: 40  VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAA 88

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           N +D +G SP+H A+R G + +L+ L+  GA +N  +++   P+HLA R
Sbjct: 68  NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 116

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           N +D +G SP+H A+R G + +L+ L+  GA +N  +++   P+HLA R
Sbjct: 70  NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 118

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 91  KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           K G +PLH A++ GH   ++ L++ GA +N ++    +PLHLAA+
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89  KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           KD+TG + +H A+R G + +L+ L+   A +N+++N    PLHLAA+
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK 112

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N +DK G +PLH A+   H+  +E L+  GA +N  +   E+PLHL A
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVA 88

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           N KD  G +PLH A   GH+  +E L+   A +N     N+SPLH AA+
Sbjct: 37  NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +N KD+ G +PL+ A+  GH+  +E L+  GA +N  +    +PLHLAA
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 90  DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           D  G SPLH A++ GH  + E L+  G   + +   + +PLH+AA
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA 75

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83  QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           ++L    D+   + LH+A   GH   +E L+ LG  +N K+++  SPLH+AA
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83  QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           ++L    D+   + LH+A   GH   +E L+ LG  +N K+++  SPLH+AA
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83  QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           ++L    D+   + LH+A   GH   +E L+ LG  +N K+++  SPLH+AA
Sbjct: 31  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 82

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 2   TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           +G  +NV  ++  SPL +AA  G    +  L+++ AN   ++ ++   LHL    G  H 
Sbjct: 75  SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG--HF 132
Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                +V    L             N+KD +G +PL YA   GH   +  L+  GA IN 
Sbjct: 133 -----QVVKCLLDSNAKP-------NKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 122 KNNSNESPLHLA 133
            NN   + LH A
Sbjct: 181 SNNKGNTALHEA 192

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83  QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           ++L    D+   + LH+A   GH   +E L+ LG  +N K+++  SPLH+AA
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-07
2rfa_A	232	Transient receptor potential cation channel subfa	5e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	9e-14
2etb_A	256	Transient receptor potential cation channel subfam	5e-11
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
2pnn_A	273	Transient receptor potential cation channel subfa	5e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 89.5 bits (223), Expect = 3e-23
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A LN  +  +++PL LA      +    L+    +  L+D      LHL    G     
Sbjct: 35  LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG----- 89

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                   V       +  + ++L   +  G + LH AS  G++  +E L++LGA +N +
Sbjct: 90  --CLASVGVLTQSC-TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146

Query: 123 NNSN-ESPLHLAAR 135
              N  + LHLA  
Sbjct: 147 EPCNGRTALHLAVD 160

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.6 bits (166), Expect = 7e-15
 Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHI 61
            + L   +    + L LA+  G    V  LV   A++  ++  N R  LHL V     + 
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ--NP 164

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                ++ ++ L       G    +N     G SP             + L  L      
Sbjct: 165 -----DLVSLLL-----KCGAD--VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212

Query: 122 KNNSNESPLHLAAR 135
               +E        
Sbjct: 213 MLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.0 bits (162), Expect = 2e-14
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 24/136 (17%)

Query: 10  DKEKRSPLLLAASRGGWKTVLTLVR----NKANILLKDINRRNILHLLVLNGGGHIKEFA 65
            ++  S L LA         + ++R    + A +  ++  ++  LHL V+          
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQP---- 58

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA------CI 119
            E+A   LG G            +D  G +PLH A  +G + S+  L            +
Sbjct: 59  -EIAEALLGAG-CD------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 120 NLKNNSNESPLHLAAR 135
              N +  + LHLA+ 
Sbjct: 111 KATNYNGHTCLHLASI 126

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 42  KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
              +  + LHL +++     K    EV     G+          LN ++    +PLH A 
Sbjct: 4   LTEDGDSFLHLAIIHEE---KALTMEVIRQVKGDLA-------FLNFQNNLQQTPLHLAV 53

Query: 102 REGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                   E L+  G    L++    +PLHLA  
Sbjct: 54  ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 88  EKDKTGCSPLHYASREGHIIS----LENLINLGACINLKNNSNESPLHLAAR 135
           +  + G S LH A            +  +    A +N +NN  ++PLHLA  
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 54

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +  +  SP  L   R   +    L +     L       +       +      
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF---T 230

Query: 63  EFAEE 67
           EF E+
Sbjct: 231 EFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 3   GADLNVLDKEK-RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GAD+N  +    R+ L LA        V  L++  A++        +   L         
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP--ST 197

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN 111
                 +             ++N   +          Y +        E+
Sbjct: 198 -----RIQQQLG-----QLTLEN--LQMLPESEDEESYDTESEFTEFTED 235

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.9 bits (219), Expect = 1e-21
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G   N    +  +PL LAA  G  + V  L+  +AN  L + +    LHL+   G  H+ 
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG--HV- 291

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                VA V +       G+   ++   + G +PLH AS  G+I  ++ L+   A +N K
Sbjct: 292 ----PVADVLI-----KHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 123 NNSNESPLHLAAR 135
                SPLH AA+
Sbjct: 341 TKLGYSPLHQAAQ 353

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 3e-21
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A    + K+  +PL +AA  G  +    L+   A+      N    LH+ V +   ++ 
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN--NL- 192

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               ++  + L      +G     +     G +PLH A+++  +    +L+  G   N +
Sbjct: 193 ----DIVKLLL-----PRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 123 NNSNESPLHLAAR 135
           +    +PLHLAA+
Sbjct: 242 SVQGVTPLHLAAQ 254

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.0 bits (214), Expect = 6e-21
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G       +   +PL +A+  G    V  L++  A+  + ++     LH+      GH  
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHT- 60

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               EVA   L         +  +N K K   +PLH A+R GH   ++ L+   A  NL 
Sbjct: 61  ----EVAKYLL-----QNKAK--VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109

Query: 123 NNSNESPLHLAAR 135
             +  +PLH+AAR
Sbjct: 110 TTAGHTPLHIAAR 122

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.9 bits (211), Expect = 1e-20
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A+ N+      +PL +AA  G  +TVL L+  +A+           LH+      G + 
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY--GKV- 159

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                VA + L      +      N   K G +PLH A    ++  ++ L+  G   +  
Sbjct: 160 ----RVAELLL-----ERDAH--PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208

Query: 123 NNSNESPLHLAAR 135
             +  +PLH+AA+
Sbjct: 209 AWNGYTPLHIAAK 221

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.8 bits (203), Expect = 2e-19
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA  NV + +  +PL +AA  G  +    L++NKA +  K  + +  LH     G     
Sbjct: 37  GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG----- 91

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                +  + L             N     G +PLH A+REGH+ ++  L+   A     
Sbjct: 92  --HTNMVKLLL-----ENNAN--PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142

Query: 123 NNSNESPLHLAAR 135
                +PLH+AA+
Sbjct: 143 TKKGFTPLHVAAK 155

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.6 bits (200), Expect = 4e-19
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G   +       +PL +AA +   +   +L++   +   + +     LHL      GH  
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE--GHA- 258

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+ A+ L     S+      N  +K+G +PLH  ++EGH+   + LI  G  ++  
Sbjct: 259 ----EMVALLL-----SKQAN--GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307

Query: 123 NNSNESPLHLAAR 135
                +PLH+A+ 
Sbjct: 308 TRMGYTPLHVASH 320

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.6 bits (200), Expect = 4e-19
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A+ N+ +K   +PL L A  G       L+++   +          LH+    G  +I 
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG--NI- 324

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               ++    L            +N K K G SPLH A+++GH   +  L+  GA  N  
Sbjct: 325 ----KLVKFLL-----QHQAD--VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373

Query: 123 NNSNESPLHLAAR 135
           ++   +PL +A R
Sbjct: 374 SSDGTTPLAIAKR 386

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G  ++   +   +PL +A+  G  K V  L++++A++  K     + LH     G  H  
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG--HT- 357

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---IISLENLINLGACI 119
               ++  + L       G     NE    G +PL  A R G+      L+ + +  + +
Sbjct: 358 ----DIVTLLL-----KNGAS--PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406

Query: 120 NLKNNSNESPLHLA 133
            + +    S     
Sbjct: 407 LVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 7e-12
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 78  ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            S GI        ++G +PLH AS  GH+  ++NL+  GA  N+ N   E+PLH+AAR
Sbjct: 1   GSPGIS--GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR 56

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.3 bits (212), Expect = 7e-21
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGW--KTVLTLVRNKANILLKDINRRNILHLLVLNGG 58
           +     +V   + ++ L      G    + +  LV+  A+   KD      L   +    
Sbjct: 126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR- 184

Query: 59  GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC 118
            +      E   + +    +   ++  L+  +K G S LH+A            + +G  
Sbjct: 185 -NR-----EALDLMMDTVPSKSSLR--LDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236

Query: 119 INLKNNSNESPLHLAAR 135
           +N+++N +  PL+L+ R
Sbjct: 237 VNMEDNEHTVPLYLSVR 253

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 9e-17
 Identities = 15/139 (10%), Positives = 34/139 (24%), Gaps = 13/139 (9%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
              L+  +K+  S L  A         +  V    ++ ++D      L+L V      + 
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA--MV- 257

Query: 63  EFAEEVAAVFLGEGEASQGIQNLL------NEKDKTGCSPLHYASREGHIISLENLINLG 116
                +    L + +                         +  A+       L+ L    
Sbjct: 258 ----LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

Query: 117 ACINLKNNSNESPLHLAAR 135
             +    N+         +
Sbjct: 314 DEVVRSLNTGAGGAVKRKK 332

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.2 bits (178), Expect = 4e-16
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 13/137 (9%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G D+N+ D E   PL L+           L++     L++     N   +L         
Sbjct: 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF 293

Query: 63  EFA------EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
             A      +EV  +        +  +  +     TG        ++         +   
Sbjct: 294 VPAAADPSKQEVLQLLQ-----EKLDE--VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346

Query: 117 ACINLKNNSNESPLHLA 133
           A +  ++ S      ++
Sbjct: 347 APVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 21/133 (15%), Positives = 36/133 (27%), Gaps = 22/133 (16%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             +    D E    + +AA +G    V  L+    +  +++      LHL      G + 
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF--GCV- 66

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               + A      GE               G  P+H A        +  L+         
Sbjct: 67  ----DTAKYLASVGE---------VHSLWHGQKPIHLAVMANKTDLVVALVEGAK----- 108

Query: 123 NNSNESPLHLAAR 135
               + P  L   
Sbjct: 109 -ERGQMPESLLNE 120

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.7 bits (208), Expect = 2e-20
 Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLT-LVRNKANILLKDINRRNILHLLVLNGGGHI 61
            A   +  + K+  LL AA  G  + ++  L     N    D  +   LHL        +
Sbjct: 14  SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN--RV 71

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                 +  + L       G    ++ KDK G  PLH A   GH    E L+  GAC+N 
Sbjct: 72  -----RIVQLLL-----QHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119

Query: 122 KNNSNESPLHLAAR 135
            +    +PLH AA 
Sbjct: 120 MDLWQFTPLHEAAS 133

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.5 bits (192), Expect = 4e-18
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 32/154 (20%)

Query: 3   GADLNVLDKEKRSPL---------------------LLAASRGGWKTVLTLVRNKANILL 41
           GAD  +++   +S +                     L AA       V   +  +     
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206

Query: 42  KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
           +  +    LH  V +     K+ AE      L      +G    +NEK+K   +PLH A+
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAE-----LL----LRKGAN--VNEKNKDFMTPLHVAA 255

Query: 102 REGHIISLENLINLGACINLKNNSNESPLHLAAR 135
              H   +E L   GA +N  ++  ++ LH AA 
Sbjct: 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.2 bits (186), Expect = 3e-17
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWK---TVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
                   +   + L  A +    K       L+R  AN+  K+ +    LH+       
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA-- 258

Query: 60  HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
           H      +V  V         G +  +N  D  G + LH A+  GH+ +   L++ G+  
Sbjct: 259 HN-----DVMEVLH-----KHGAK--MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306

Query: 120 NLKNNSNESPLHLAA 134
           ++ +    +   +  
Sbjct: 307 SIISLQGFTAAQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.0 bits (175), Expect = 8e-16
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 27  KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL 86
           K+ L L    A  +L    +++ L     +G        E++ A+          +    
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGN------EEKLMALLT-----PLNVN--C 51

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +  D    +PLH A+    +  ++ L+  GA ++ K+     PLH A  
Sbjct: 52  HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.0 bits (162), Expect = 5e-14
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 21/133 (15%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA++N  +K+  +PL +AA R     +  L ++ A +   D   +  LH   L G  H+ 
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG--HL- 293

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +   + L     S G     +     G +     +        + +++    +   
Sbjct: 294 ----QTCRLLL-----SYGSD--PSIISLQGFTAAQMGNEAV-----QQILSESTPMRTS 337

Query: 123 NNSNESPLHLAAR 135
           +   +  L  A++
Sbjct: 338 DV--DYRLLEASK 348

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 8e-14
 Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 35/154 (22%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD++  DK    PL  A S G ++    L+++ A +   D+ +   LH         + 
Sbjct: 81  GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK--NRV- 137

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLIN-------- 114
               EV ++ L     S G        +  G S +  A        L             
Sbjct: 138 ----EVCSLLL-----SHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186

Query: 115 -------------LGACINLKNNSNESPLHLAAR 135
                        L      +  S+E+ LH A  
Sbjct: 187 READLAKVKKTLALEIINFKQPQSHETALHCAVA 220

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.7 bits (198), Expect = 5e-20
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
              +N  D+E  +PL+ AA+ G    V  L++N A+  L    R + L L      G+  
Sbjct: 26  ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK--GYT- 82

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               ++  + L  G         +NE D  G +PL YA    H+  ++ L+  GA   ++
Sbjct: 83  ----DIVKMLLDCG-VD------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131

Query: 123 NNSNESPLHLAAR 135
            +S  + + LA  
Sbjct: 132 TDSGYNSMDLAVA 144

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.3 bits (171), Expect = 4e-16
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 14  RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
              +   A++G    + T +  +  I   D      L     +  G I      V    L
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH--GQI-----AVVEFLL 56

Query: 74  GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
             G A            K   S L  A  +G+   ++ L++ G  +N  + +  +PL  A
Sbjct: 57  QNG-AD------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109

Query: 134 AR 135
             
Sbjct: 110 VH 111

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 63.9 bits (157), Expect = 4e-14
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD  +L K + S L LA S+G    V  L+    ++   D N    L   V     H+ 
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN--HV- 115

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +   + L  G A          +  +G + +  A   G+    + + +    +   
Sbjct: 116 ----KCVKMLLESG-AD------PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164

Query: 123 NN 124
             
Sbjct: 165 IK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 9e-08
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
               +H  + +G ++ L   I     IN  +    +PL  AA 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAA 45

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.9 bits (201), Expect = 7e-20
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 13/133 (9%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA+++   +++R+PL+ AA     + V  L++  A +  KD      LHL      GH  
Sbjct: 34  GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK--GHY- 90

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               EV    L     S G  + +N +D  G +P+ +A+   H+  ++ L++ G+ IN++
Sbjct: 91  ----EVVQYLL-----SNGQMD-VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140

Query: 123 NNSNESPLHLAAR 135
           +N     LH AA 
Sbjct: 141 DNEENICLHWAAF 153

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 77.1 bits (191), Expect = 2e-18
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 4   ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
            D+N  D    +P++ A        V  L+   ++I ++D      LH    +G   +  
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG--CV-- 157

Query: 64  FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
              ++A + L     +      L+  +  G SPLH A+RE     +   ++  + + LKN
Sbjct: 158 ---DIAEILL-----AAKCD--LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207

Query: 124 NSNESPLHLAAR 135
              E+PL  A+ 
Sbjct: 208 KEGETPLQCASL 219

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 75.1 bits (186), Expect = 1e-17
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
           GA ++  D E  + L LAA +G ++ V  L+ N   ++  +D      +         H+
Sbjct: 67  GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK--HV 124

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                ++  + L     S+G    +N +D      LH+A+  G +   E L+     ++ 
Sbjct: 125 -----DLVKLLL-----SKGSD--INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172

Query: 122 KNNSNESPLHLAAR 135
            N   +SPLH+AAR
Sbjct: 173 VNIHGDSPLHIAAR 186

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.2 bits (181), Expect = 4e-17
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 4   ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
            +  +  + KRSPL  AA  G       LV+  ANI     ++R  L     N   H+  
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHL-- 57

Query: 64  FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INLK 122
              E     +       G    ++ KD  G + LH A+++GH   ++ L++ G   +N +
Sbjct: 58  ---EAVKYLI-----KAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107

Query: 123 NNSNESPLHLAAR 135
           ++   +P+  A  
Sbjct: 108 DDGGWTPMIWATE 120

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.6 bits (156), Expect = 2e-13
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G+D+N+ D E+   L  AA  G       L+  K ++   +I+  + LH+          
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN--RY- 190

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
               +   +FL     S+     +  K+K G +PL  AS    + S   +     
Sbjct: 191 ----DCVVLFL-----SRDSD--VTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.4 bits (202), Expect = 7e-20
 Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
              L   + +  +PL +A      + V  L    A++   +       LHL V       
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ---- 203

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
              A  V  + L       G       +   G +PL  A    + I    L   GA    
Sbjct: 204 ---AASVLELLL-----KAGAD--PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

Query: 122 KNNSNESPLHLAAR 135
                 SP   +  
Sbjct: 254 DGGDKLSPCSSSGS 267

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 72.2 bits (178), Expect = 2e-16
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 16/136 (11%)

Query: 2   TGADLNVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
                +       +P  + +               +  +  ++ +    LH+ V++    
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH--KD 170

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKT-GCSPLHYASREGHIISLENLINLGACI 119
                 E+  +         G    LN+ + T G +PLH A        LE L+  GA  
Sbjct: 171 A-----EMVRLLR-----DAGAD--LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

Query: 120 NLKNNSNESPLHLAAR 135
             +     +PL  A  
Sbjct: 219 TARMYGGRTPLGSALL 234

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.2 bits (152), Expect = 8e-13
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 17/143 (11%)

Query: 3   GAD---LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
            A    L++ +   ++ L LAA  G   TV  L    A +L+ +      LHL       
Sbjct: 32  SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR-- 89

Query: 60  HIKEFAEEVAAVFLGEG------EASQGIQNLLNEKDKTGCSPLHYASRE-GHIISLENL 112
                A   A V L          +   +    +    T  +P    S+           
Sbjct: 90  -----AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 113 INLGACINLKNNSNESPLHLAAR 135
            +    +  +N    +PLH+A  
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVI 167

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 44/130 (33%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
              + ++  + L LA        +  L+   A                            
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-------------------------- 35

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
                               L+ ++  G + LH A+  G   ++E L   GA + +    
Sbjct: 36  ------------------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG 77

Query: 126 NESPLHLAAR 135
             + LHLA R
Sbjct: 78  GHTALHLACR 87

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 15/104 (14%)

Query: 3   GADLNVLDKEK-RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GADLN  +    R+PL LA        +  L++  A+   +    R  L   +L    + 
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP--NP 238

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
                 +A +       + G      E      SP   +  +  
Sbjct: 239 -----ILARLLR-----AHGAP--EPEDGGDKLSPCSSSGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 85  LLNEKDKTGCSPLHYASREGHIISLENLINLGA---CINLKNNSNESPLHLAAR 135
           +     + G + LH A    H   L+ L+   A    ++L+N+  ++ LHLAA 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 3/65 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD        R+PL  A  R        L  + A       ++ +       +      
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD--SD-S 271

Query: 63  EFAEE 67
           +  +E
Sbjct: 272 DNRDE 276

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.8 bits (198), Expect = 1e-19
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             DLN +  +  + L LA  +  ++    L+ N A++ +KD   +  LH     G   + 
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG--SL- 153

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI-NLGACINL 121
               ++  +  G G+++      +N +DK G +PL +A  EGH  +   L+   GA  +L
Sbjct: 154 ----KLIELLCGLGKSA------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

Query: 122 KNNSNESPLHLAAR 135
            +N       +A  
Sbjct: 204 VDNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.8 bits (185), Expect = 1e-17
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN---ILHLLVLNGGG 59
            + L   D++ R PL  + S    +    L+    N+ L D    +     H+    G  
Sbjct: 26  PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG-- 83

Query: 60  HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
           ++     EV           + ++  LN+    G + LH A  +      + LI  GA +
Sbjct: 84  NL-----EVVKSLY-----DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133

Query: 120 NLKNNSNESPLHLAAR 135
            +K+  N+ PLH AA 
Sbjct: 134 RIKDKFNQIPLHRAAS 149

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.4 bits (171), Expect = 1e-15
 Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 20/139 (14%)

Query: 3   GADLNV---LDKEKRSPLLLAASRGGWKTVLTLVRN--KANILLKDINRRNILHLLVLNG 57
             ++N+    D    +P  +A S G  + V +L     K ++          LHL V   
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 58  GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG- 116
                    EV+   +       G    +  KDK    PLH A+  G +  +E L  LG 
Sbjct: 119 --WF-----EVSQFLI-----ENGAS--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164

Query: 117 ACINLKNNSNESPLHLAAR 135
           + +N ++    +PL  A  
Sbjct: 165 SAVNWQDKQGWTPLFHALA 183

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 66.3 bits (163), Expect = 2e-14
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 14  RSPLLLAASRGGWKTVLT-LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF 72
             PL  A     +  V   L    + +L KD + R  LH  V            E+ +  
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAH-----EITSFL 55

Query: 73  LGEGEASQGIQ-NLLNEKDKTGCSPLHYASREGHIISLENLIN--LGACINLKNNSNESP 129
           L     S+    NL +  D +G +P H A   G++  +++L +  L   +N   N   + 
Sbjct: 56  L-----SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

Query: 130 LHLAAR 135
           LHLA  
Sbjct: 111 LHLAVG 116

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHI 61
           GA + + DK  + PL  AAS G  K +  L    K+ +  +D      L   +  G  H 
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG--HG 187

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI 106
                + A + + +  A        +  D  G      A  E   
Sbjct: 188 -----DAAVLLVEKYGAE------YDLVDNKGAKAEDVALNEQVK 221

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 93  GCSPLHYASREGHIISL-ENLINLGACINLKNNSNESPLHLAAR 135
              PLH A  E     + E L +  + +  K+     PLH +  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 45

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.9 bits (195), Expect = 2e-19
 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 13/129 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLT------LVRNKANILLKDINRRNILHLLVLN 56
           GAD+    KE  +        GG     T       +   A+I       + ++   + N
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 57  GGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
                 E       +F        G+Q  L  KDK G + L +  R    I+L+ + +  
Sbjct: 125 YFVDENEMIPLYKLIFS-----QSGLQ--LLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

Query: 117 ACINLKNNS 125
              NLK NS
Sbjct: 178 KKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.2 bits (154), Expect = 1e-13
 Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 17/131 (12%)

Query: 11  KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 70
             +   +  AA  G ++  L L         K+   ++ +   VL       E   +++ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNN--DEARYKISM 59

Query: 71  VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH------IISLENLINLGACINLKNN 124
             + +G A       +  + K G +      + G           +  +  GA I     
Sbjct: 60  FLINKG-AD------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112

Query: 125 SNESPLHLAAR 135
             +  +     
Sbjct: 113 PYKIVVFKNIF 123

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 5e-13
 Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 22/145 (15%)

Query: 3   GADLNVLDKEKRSPLLLAA-----SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
           G +    +   +S +L            +K  + L+   A+I  +      +   L   G
Sbjct: 29  GYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86

Query: 58  GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN------ 111
           G  I    E        E  A       +    K     +        +   E       
Sbjct: 87  GNDITGTTELCK--IFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 112 -LINLGACINLKNNSNESPLHLAAR 135
                G  + +K+    + L    R
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKR 163

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.6 bits (195), Expect = 3e-19
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
            AD N+ D   R+PL  A S         L+RN+A ++  +  +    L L         
Sbjct: 48  SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA---- 103

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
               E +    +     +      +N  D  G S LH+A+   ++ +   L+  GA  ++
Sbjct: 104 ---VEGMLEDLI-----NSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153

Query: 122 KNNSNESPLHLAAR 135
           +NN  E+PL LAAR
Sbjct: 154 QNNREETPLFLAAR 167

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.8 bits (193), Expect = 7e-19
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 3   GADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GA L N  D+   + L LAA          L+   A+  ++D   R  LH  V       
Sbjct: 14  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD---- 69

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
              A+ V  + +          + L+ +   G +PL  A+R      LE+LIN  A +N 
Sbjct: 70  ---AQGVFQILI-----RNRATD-LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 122 KNNSNESPLHLAAR 135
            ++  +S LH AA 
Sbjct: 121 VDDLGKSALHWAAA 134

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 76.7 bits (190), Expect = 2e-18
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             DL+    +  +PL+LAA       +  L+ + A++   D   ++ LH           
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN---- 137

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               + A V L       G     + ++    +PL  A+REG   + + L++  A  ++ 
Sbjct: 138 ---VDAAVVLL-----KNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187

Query: 123 NNSNESPLHLAAR 135
           ++ +  P  +A  
Sbjct: 188 DHMDRLPRDIAQE 200

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 2e-13
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            AD+N +D   +S L  AA+       + L++N AN  +++      L L    G     
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SY- 171

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
               E A V L             +  D     P   A    H   +  L       +
Sbjct: 172 ----ETAKVLL-----DHFAN--RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 4e-12
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 58  GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
           G         V + F+      QG  +L N+ D+TG + LH A+R     + + L+   A
Sbjct: 1   GDA-----PAVISDFI-----YQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 49

Query: 118 CINLKNNSNESPLHLAAR 135
             N+++N   +PLH A  
Sbjct: 50  DANIQDNMGRTPLHAAVS 67

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.5 bits (197), Expect = 5e-19
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA++N  D E   PL  AAS G       L+   A++   +      L +        + 
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

Query: 63  EF------AEEVAAVFLGEGEASQGIQNLL-------NEKDKTGCSPLHYASREGHIISL 109
           +        +  AA    E    +  +  L           K+G + LH A+ +G+   L
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 110 ENLINLGACINLKNNSNESPLHLAAR 135
           + LI     +N+K+    +PLH AA 
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAH 241

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.1 bits (178), Expect = 3e-16
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
                V   +  +  L A S G  + VL L+   A+I   +++    LH   ++   ++ 
Sbjct: 31  RKKTKVKFDD-GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD--NV- 86

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               ++    +       G    +N+ D  G  PLH A+  G++   E LI+ GA +   
Sbjct: 87  ----DMVKFLV-----ENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

Query: 123 NNSNESPLHLAAR 135
           N+  ++PL +A  
Sbjct: 136 NSEGDTPLDIAEE 148

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 27/153 (17%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLV-RNKANILLKDINRRNILHL----LVLNG 57
           GA +  ++ E  +PL +A      + +   V R   +I         I+       + +G
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188

Query: 58  GGHIKE----------FA-----EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASR 102
             +              A      EV  + +            +N KD  G +PLH A+ 
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLI-----QARYD--VNIKDYDGWTPLHAAAH 241

Query: 103 EGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            G   +   L+     +   N   ++   +A  
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
           + + D +++    L    G    +   V  +    +K  +   +      +  G      
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSS--GDT---- 53

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
            E     L      +G    +N  +  G + LH A  + ++  ++ L+  GA IN  +N 
Sbjct: 54  -EEVLRLL-----ERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 126 NESPLHLAAR 135
              PLH AA 
Sbjct: 106 GWIPLHAAAS 115

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 14/122 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             +     K   + L +AA++G  + +  L++ + ++ +KD +    LH     G     
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG--KE- 245

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E   + +            +   +K G +    A  +      E         + K
Sbjct: 246 ----EACRILV-----ENLCD--MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEK 294

Query: 123 NN 124
             
Sbjct: 295 RE 296

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.1 bits (191), Expect = 6e-19
 Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             DLN  D    SPL  A   G    V  L+   A I + +      LHL   +G  H  
Sbjct: 29  ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG--HR- 85

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               ++    L            +N  ++ G  PLHYA   G     E+L+  GA +++ 
Sbjct: 86  ----DIVQKLL-----QYKAD--INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134

Query: 123 NNSNESPLHLAAR 135
           N   E P+  A  
Sbjct: 135 NKYGEMPVDKAKA 147

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 68.2 bits (168), Expect = 1e-15
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 20/132 (15%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA +NV+++   +PL LAAS G    V  L++ KA+I   + +    LH     G     
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG--QD- 118

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +VA   +     + G    ++  +K G  P+  A      +  E    +G  +   
Sbjct: 119 ----QVAEDLV-----ANGAL--VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL--- 164

Query: 123 NNSNESPLHLAA 134
              N  P     
Sbjct: 165 ---NRIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 63.6 bits (156), Expect = 9e-14
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 10  DKEKRSPLLLAASRGGWKTVLTLVRNKANIL-LKDINRRNILHLLVLNGGGHIKEFAEEV 68
             E    +      G    V   + N  N L   D +  + LH       G        V
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE--GRS-----AV 54

Query: 69  AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES 128
             + +      +G +  +N  ++   +PLH A+  GH   ++ L+   A IN  N     
Sbjct: 55  VEMLI-----MRGAR--INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV 107

Query: 129 PLHLAAR 135
           PLH A  
Sbjct: 108 PLHYACF 114

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 78.3 bits (194), Expect = 8e-19
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
            AD N+ D   R+PL  A S         L+RN+A ++  +  +    L L         
Sbjct: 80  SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV--- 136

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
               E +    +     +      +N  D  G S LH+A+   ++ +   L+  GA  ++
Sbjct: 137 ----EGMLEDLI-----NSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185

Query: 122 KNNSNESPLHLAAR 135
           +NN  E+PL LAAR
Sbjct: 186 QNNREETPLFLAAR 199

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.9 bits (193), Expect = 1e-18
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 3   GADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GA L N  D+   + L LAA          L+   A+  ++D   R  LH  V       
Sbjct: 46  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD---- 101

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
              A+ V  + +          + L+ +   G +PL  A+R      LE+LIN  A +N 
Sbjct: 102 ---AQGVFQILI-----RNRATD-LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

Query: 122 KNNSNESPLHLAAR 135
            ++  +S LH AA 
Sbjct: 153 VDDLGKSALHWAAA 166

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.8 bits (185), Expect = 2e-17
 Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             DL+    +  +PL+LAA       +  L+ + A++   D   ++ LH        ++ 
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN--NV- 170

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               + A V L       G     + ++    +PL  A+REG   + + L++  A  ++ 
Sbjct: 171 ----DAAVVLL-----KNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219

Query: 123 NNSNESPLHLAAR 135
           ++ +  P  +A  
Sbjct: 220 DHMDRLPRDIAQE 232

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.6 bits (161), Expect = 4e-14
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 43  DINRRNI-----LHLLVLNGGGHIKEFAE------EVAAVFLGEGEASQGIQNLLNEKDK 91
           D+N R       L +   +GGG     +E       V + F+      QG  +L N+ D+
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-----YQGA-SLHNQTDR 55

Query: 92  TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           TG + LH A+R     + + L+   A  N+++N   +PLH A  
Sbjct: 56  TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.8 bits (159), Expect = 8e-14
 Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 14/121 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            AD+N +D   +S L  AA+       + L++N AN  +++      L L    G     
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----- 201

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
             + E A V L             +  D     P   A    H   +  L       +  
Sbjct: 202 --SYETAKVLL-----DHFAN--RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

Query: 123 N 123
           +
Sbjct: 253 H 253

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 76.2 bits (189), Expect = 9e-19
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D    +PL LAA  G  + V  L++N A++   D      L L  L G  H+ 
Sbjct: 37  GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG--HL- 93

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L       G    +N  D  G +PLH A+  GH+  +E L+  GA +N +
Sbjct: 94  ----EIVEVLL-----KNGAD--VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142

Query: 123 NNSNESPLHLAAR 135
           +   ++   ++  
Sbjct: 143 DKFGKTAFDISID 155

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 71.2 bits (176), Expect = 7e-17
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 1   MTGADLNVL-DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
           M G+  +     +    LL AA  G    V  L+ N A++  +D +    LHL   NG  
Sbjct: 1   MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG-- 58

Query: 60  HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
           H+     E+  V L       G    +N  D  G +PL  A+  GH+  +E L+  GA +
Sbjct: 59  HL-----EIVEVLL-----KNGAD--VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106

Query: 120 NLKNNSNESPLHLAAR 135
           N  +    +PLHLAA 
Sbjct: 107 NANDMEGHTPLHLAAM 122

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.4 bits (135), Expect = 7e-11
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +D    +PL LAA  G  + V  L++N A++   D+     LHL  + G  H+ 
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG--HL- 126

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
               E+  V L       G    +N +DK G +    +   G+
Sbjct: 127 ----EIVEVLL-----KNGAD--VNAQDKFGKTAFDISIDNGN 158

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.5 bits (192), Expect = 1e-18
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G +L++ +  +++PL LA        V  LV   A+ +  D + +   HL   +      
Sbjct: 36  GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR----- 90

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
             +       L            L  ++  G + LH A       +++ L+  GA I+  
Sbjct: 91  --SPTCLRALLDSAAPGTLD---LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 123 NNSN-ESPLHLAAR 135
           +  +  SPL  A  
Sbjct: 146 DIKSGRSPLIHAVE 159

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.7 bits (190), Expect = 2e-18
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 2   TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGH 60
              DL   + +  + L +A +    +TV  L+   A+I   DI   R+ L   V N    
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN--S 162

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
           +      +  + L       G    +N +  +G S LH AS  G +  +  L+  GA  +
Sbjct: 163 L-----SMVQLLL-----QHGAN--VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210

Query: 121 LKNNSNESPLHLAAR 135
           LKN  N++PL +A  
Sbjct: 211 LKNCHNDTPLMVARS 225

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.6 bits (161), Expect = 4e-14
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLV----RNKANILLKDINRRNILHLLVLNGGGHI 61
               D++  +PL +A  +G    V  LV    +    + + +  R+  LHL V+      
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT--L- 58

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC--- 118
                 V  + +     + G        D+ G +  H A        L  L++  A    
Sbjct: 59  ----PSVVRLLV-----TAGAS--PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107

Query: 119 -INLKNNSNESPLHLAAR 135
            +  +N    + LH+A  
Sbjct: 108 DLEARNYDGLTALHVAVN 125

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.2 bits (147), Expect = 4e-12
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 85  LLNEKDKTGCSPLHYASREGHIISLENLINL----GACINLKNNSNESPLHLAAR 135
           +    D+ G +PLH A  +G++ ++  L+NL    G  +++ NN  ++PLHLA  
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 55

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 3   GADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GAD++ +D K  RSPL+ A        V  L+++ AN+  +  +  + LH     G   +
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG--LL 196

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
                 +    +       G     + K+    +PL  A     I  L       A
Sbjct: 197 -----PLVRTLV-----RSGAD--SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 74.8 bits (185), Expect = 2e-18
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
              +++L     + L  AA+RG  +TV  L+   A+    +   R  + ++++   G   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA- 57

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC-SPLHYASREGHIISLENLINLGACINL 121
               +VA + L  G A        N  D      P+H A+REG + +L  L   GA +++
Sbjct: 58  ----QVAELLLLHG-AE------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 122 KNNSNESPLHLAAR 135
            +     P+ LA  
Sbjct: 107 CDAWGRLPVDLAEE 120

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.1 bits (134), Expect = 5e-11
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 16/116 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
           GAD N L++  R P+ +    G  +    L+ + A     D       +H     G   +
Sbjct: 35  GADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG--FL 91

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
                +   V    G A       L+  D  G  P+  A  +GH      L     
Sbjct: 92  -----DTLVVLHRAG-AR------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 77.1 bits (191), Expect = 2e-18
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD +++D E  S + LAA  G    V  L+    ++ + D N    L         H  
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT--HSV 156

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKT-GCSPLHYASREGHIISLENLINLGACINL 121
           +         L     +  +   +N  DK    + LH+A   G+   +  L+  GA ++ 
Sbjct: 157 DPTR-----LL----LTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205

Query: 122 KNNSNESPLHLAAR 135
           +N   ES L LA +
Sbjct: 206 QNIKGESALDLAKQ 219

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.4 bits (184), Expect = 2e-17
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
           G D+   DKE  + L  AA       V   +   A +     +  +  LH       GH+
Sbjct: 32  GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ--GHL 89

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                 +    +       G     +  D  GCS +H A++ GH   +  LI  G  +++
Sbjct: 90  -----SMVVQLM-----KYGAD--PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137

Query: 122 KNNSNESPLHLAAR 135
            + +  +PL  AA 
Sbjct: 138 MDQNGMTPLMWAAY 151

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.1 bits (165), Expect = 1e-14
 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
           +  +D      ++ A   G ++    LV    ++   D     +LH   +N    I    
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN--NRI---- 55

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNN 124
            ++   ++     S+G    +++       +PLH+A+R+GH+  +  L+  GA  +L + 
Sbjct: 56  -DLVKYYI-----SKGAI--VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107

Query: 125 SNESPLHLAAR 135
              S +HLAA+
Sbjct: 108 EGCSCIHLAAQ 118

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.5 bits (148), Expect = 3e-12
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 16/123 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKD-INRRNILHLLVLNGGGH 60
           G D++++D+   +PL+ AA R         L+    ++ L D  ++   LH  VL G  +
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG--N 189

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
                  V ++ L       G    ++ ++  G S L  A +  ++  + +L        
Sbjct: 190 T-----TVISLLL-----EAGAN--VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

Query: 121 LKN 123
             N
Sbjct: 238 YDN 240

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.1 bits (186), Expect = 2e-18
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 15/133 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA     D    SPL LAA  G + T   L+R   +   +    R  LH+    G  H  
Sbjct: 25  GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG--HA- 80

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                +  V L       G    +N KD    + LH+A+   H   +E LI  GA ++ +
Sbjct: 81  ----NIVEVLL-----KHGAD--VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129

Query: 123 NNSNESPLHLAAR 135
           +   ++   ++  
Sbjct: 130 SKFCKTAFDISID 142

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.0 bits (170), Expect = 5e-16
 Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 16  PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 75
            LL AA  G    V  L+ N A     D    + LHL    G  H          V L  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HF-----STTEVLL-- 54

Query: 76  GEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                G+    + + K   +PLH A+ EGH   +E L+  GA +N K+    + LH A  
Sbjct: 55  ---RAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE 109

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 56.2 bits (137), Expect = 3e-11
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G   +   K  R+PL +AAS G    V  L+++ A++  KD+ +   LH    +   H  
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN--HQ- 113

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
               EV  + +       G    ++ + K   +    +   G+
Sbjct: 114 ----EVVELLI-----KYGAD--VHTQSKFCKTAFDISIDNGN 145

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.5 bits (109), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
               L  A+R G    +  L+  GA     +    SPLHLAA+
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQ 43

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 76.5 bits (189), Expect = 2e-18
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 13/133 (9%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
              +    +   +PL  AA RG    +   + N+  +   D      L+       GH  
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG--GH-- 118

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
              +++  +   +          LN+++K G + LH A+ +G+   ++ L+  GA  +L+
Sbjct: 119 ---KDIVEMLFTQPNIE------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169

Query: 123 NNSNESPLHLAAR 135
           N   +    +A  
Sbjct: 170 NIEKKLAFDMATN 182

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.0 bits (185), Expect = 8e-18
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 20/134 (14%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             D+  +     +      S+G      T +     +  +  +  N LH       G++ 
Sbjct: 35  EGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYVAEQAESIDNPLHEAAKR--GNL- 86

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI-NLGACINL 121
                     L        +   +N  DK G + L++A   GH   +E L       +N 
Sbjct: 87  ----SWLRECL-----DNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135

Query: 122 KNNSNESPLHLAAR 135
           +N   ++ LH AA 
Sbjct: 136 QNKLGDTALHAAAW 149

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 15/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHI 61
              +N LDK   + L  A   G    V  L       +  ++      LH     G  + 
Sbjct: 96  RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG--YA 153

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                ++  + L     ++G +   + ++         A+       L+      A   L
Sbjct: 154 -----DIVQLLL-----AKGAR--TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201

Query: 122 KNNSNESPLHLAAR 135
            N  +      +  
Sbjct: 202 SNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 19/130 (14%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
                K  +  +  A      +T   L   + +I+                         
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWK------------- 51

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
                   G         N + E+ ++  +PLH A++ G++  L   ++    +N  + +
Sbjct: 52  ----GTSKGRTGLIPS--NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA 105

Query: 126 NESPLHLAAR 135
             + L+ A  
Sbjct: 106 GSTALYWACH 115

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 14/103 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             +LN  +K   + L  AA +G    V  L+   A   L++I ++    +          
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA--CA- 186

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
                +     G               +         +  E H
Sbjct: 187 ----SLLKKKQGTDAV-------RTLSNAEDYLDDEDSDLEHH 218

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 2/134 (1%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
              L + D   R+ L       G        +   +IL+  I ++    +         K
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 63  EFAEEVAAVFLGEGEASQG--IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
              +                 I N+LN +D  G + L+ A+R G+I  ++ L++ GA   
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310

Query: 121 LKNNSNESPLHLAA 134
           + N S   P+   A
Sbjct: 311 IANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 6/139 (4%)

Query: 3   GADLNVLDKEKRSPLLLAASRG---GWKTVLTLVR-NKANILLKDINRRNILHLLVLNGG 58
           G++    D    S L+ A          T   L+      ++L+D   R ILH +++  G
Sbjct: 154 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213

Query: 59  GHIKEFAEEVAAVFLGEGEASQGIQ--NLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
                 A +     L      +  +       + ++  +  +   ++  + +L+    + 
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273

Query: 117 ACINLKNNSNESPLHLAAR 135
             +N ++++ ++ L++AAR
Sbjct: 274 NMLNAQDSNGDTCLNIAAR 292

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 23/146 (15%)

Query: 2   TGADLNV-LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
           T  +LN+ +D+   +PL    S    + V  LV++ +N L  D    + L   V +   +
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA----SREGHIIS-------- 108
                E +                 L  +D    + LH+        G   +        
Sbjct: 179 DSGTFEAL---------LDYLYPC-LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 228

Query: 109 LENLINLGACINLKNNSNESPLHLAA 134
           +  ++           + +       
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDK 254

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 86  LNEK-DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           LN   D+ G +PLH+ +   ++  +++L+  G+     +N  ES L  A +
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.9 bits (188), Expect = 2e-18
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
              ++ +D E  +PL +A      +    L+   A+I L++    +          G   
Sbjct: 29  TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ--GR-- 84

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG-ACINL 121
               E+ A  L          + LN+ ++ G + L  A+ +GHI +++ L+  G   I+ 
Sbjct: 85  ---TEILAYML-----KHATPD-LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

Query: 122 KNNSNESPLHLAA 134
           +N+   + L  A 
Sbjct: 136 QNDFGYTALIEAV 148

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.0 bits (170), Expect = 1e-15
 Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 19/139 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
           GAD+N+ +    SP L A ++G  + +  ++++   ++   +    N L      G  HI
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG--HI 119

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA-----SREGHIISLENLINLG 116
                +   + L +G         ++ ++  G + L  A       + +   ++ L+  G
Sbjct: 120 -----DNVKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 117 ACINLKNNSNESPLHLAAR 135
           A  ++K+NS  + +  A +
Sbjct: 169 ADQSIKDNSGRTAMDYANQ 187

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 68.2 bits (168), Expect = 2e-15
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 15/127 (11%)

Query: 10  DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
             E  + L  A  R   K    L      +   D      L++ V N    I     E+A
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN--DI-----EIA 55

Query: 70  AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INLKNNSNES 128
              +      +G    +N ++    SP  YA  +G    L  ++      +N  N    +
Sbjct: 56  KALI-----DRGAD--INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN 108

Query: 129 PLHLAAR 135
            L  AA 
Sbjct: 109 ALIPAAE 115

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.2 bits (142), Expect = 1e-11
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 14/95 (14%)

Query: 41  LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA 100
           +K      +L               ++V  +           Q  ++E D  G +PL+ A
Sbjct: 1   MKTYEVGALLEAANQRD-------TKKVKEILQ-----DTTYQ--VDEVDTEGNTPLNIA 46

Query: 101 SREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                I   + LI+ GA INL+N+ ++SP   A  
Sbjct: 47  VHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 74.4 bits (184), Expect = 6e-18
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 3   GADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           G +L N  D+   +PL+ A++ G  +TV  L+   A+  +    R + L L    G  + 
Sbjct: 25  GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG--Y- 81

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                ++  + L            +N  D  G +PL YA R  H+  +E L+  GA +  
Sbjct: 82  ----TDIVGLLLERD-VD------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130

Query: 122 KNNSNESPLHLAAR 135
           + +S  +P+ LA  
Sbjct: 131 EADSGYTPMDLAVA 144

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 68.2 bits (168), Expect = 1e-15
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD ++L KE+ S L LA++ G    V  L+    +I + D N    L   V     H+ 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN--HV- 115

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +     L  G A          +  +G +P+  A   G+    + + N    +   
Sbjct: 116 ----KCVEALLARG-ADL------TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164

Query: 123 NNSNESP 129
           N     P
Sbjct: 165 NLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.0 bits (157), Expect = 6e-14
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 15/121 (12%)

Query: 16  PLLLAASRGGWKTVLTLVRNKAN-ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
            +   A++G    +   +R   N +   D      L        G I     E     L 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF--GEI-----ETVRFLLE 57

Query: 75  EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
            G A        +   K   S L  AS  G+   +  L+     IN+ + +  +PL  A 
Sbjct: 58  WG-AD------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110

Query: 135 R 135
           R
Sbjct: 111 R 111

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.7 bits (107), Expect = 9e-07
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 93  GCSPLHYASREGHIISLENLINLGA-CINLKNNSNESPLHLAAR 135
               +H  + +G +  L+  +  G   +N  +    +PL  A+ 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASA 45

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
                  + E    L   A+ G +     + R   NI+    + R +LH +  N      
Sbjct: 84  LQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKS 141

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           E      A       A       +N  D    +PL  A        +  L+  GA   + 
Sbjct: 142 EDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 195

Query: 123 NNSNESPLHLAAR 135
           N S  S LH AA 
Sbjct: 196 NKSERSALHQAAA 208

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.1 bits (188), Expect = 2e-17
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 24/145 (16%)

Query: 2   TGADLNVLDKEKRSPLLLAASRGGWKTVLT---LVRNKANILL--------KDINRRNIL 50
              D+  LD+   + L++ A   G   V +   LV   A +          +    R  L
Sbjct: 224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

Query: 51  HLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLE 110
           H        ++      +    +GE  ++       +++D+ G +P+  A++EG I  + 
Sbjct: 284 HYAAQVS--NM-----PIVKYLVGEKGSN------KDKQDEDGKTPIMLAAQEGRIEVVM 330

Query: 111 NLINLGACINLKNNSNESPLHLAAR 135
            LI  GA +   + ++ +   LA  
Sbjct: 331 YLIQQGASVEAVDATDHTARQLAQA 355

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N +D ++ +PL+LA      + V  L++  A+  + + + R+ LH    N      
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR----- 210

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---IISLENLINLGACI 119
                +    L   +    I     E D+ G + L   +       + S + L+  GA +
Sbjct: 211 --DFGMMVYMLNSTKLKGDI----EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 120 NL--------KNNSNESPLHLAAR 135
           +         +     + LH AA+
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQ 288

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 18/137 (13%), Positives = 31/137 (22%), Gaps = 24/137 (17%)

Query: 7   NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
           N L      P       G          N       +      LH       G       
Sbjct: 55  NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA---AGSY----- 106

Query: 67  EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI--------ISLENLINLGAC 118
            +           + +   + +      + LH+ +                +  I  GA 
Sbjct: 107 AITEPIT-----RESVN--IIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 119 INLKNNSNESPLHLAAR 135
           +N  +    +PL LA  
Sbjct: 159 VNAMDCDENTPLMLAVL 175

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 18/133 (13%), Positives = 28/133 (21%), Gaps = 25/133 (18%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
               +      +  LL A+  G  K                            NG   + 
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIK---------RQRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +F      +                E +      LH  +  G     E +      I   
Sbjct: 78  DFNHTNLQI--------------PTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-D 121

Query: 123 NNSNESPLHLAAR 135
              N + LH  A 
Sbjct: 122 PRHNRTVLHWIAS 134

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 23/124 (18%)

Query: 3   GADLNVL--------DKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLL 53
           GA ++            + R+ L  AA       V  LV  K +N   +D + +  + L 
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

Query: 54  VLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI 113
              G   I     EV    +      QG    +   D T  +    A    H   ++   
Sbjct: 321 AQEG--RI-----EVVMYLI-----QQGAS--VEAVDATDHTARQLAQANNHHNIVDIFD 366

Query: 114 NLGA 117
               
Sbjct: 367 RCRP 370

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 73.2 bits (181), Expect = 1e-17
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             +   ++  + +PL  AA       V  L+++ A++  KD      LH     G  H  
Sbjct: 32  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG--HY- 88

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               EVA + +       G    +N  D    +PLH A+ +G     + L+  GA    K
Sbjct: 89  ----EVAELLV-----KHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137

Query: 123 NNSNESPLHLAAR 135
           N    +PL L   
Sbjct: 138 NRDGNTPLDLVKD 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.5 bits (174), Expect = 1e-16
 Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 18/134 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHI 61
           GA  N    E    LL AA  G  +TV  L   +  N    +  +   LH         +
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RV 55

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                 V    L       G    ++ KDK G  PLH A   GH    E L+  GA +N+
Sbjct: 56  -----SVVEYLL-----QHGAD--VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103

Query: 122 KNNSNESPLHLAAR 135
            +    +PLH AA 
Sbjct: 104 ADLWKFTPLHEAAA 117

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 73.6 bits (182), Expect = 1e-17
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
              L   D E  + L+ A           L+   +N+  KD + +  L   ++ G     
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY---- 113

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E++   L       G    +N+++  G +PL  AS+ G    ++ L+ LGA I+ +
Sbjct: 114 ---SEMSYFLL-----EHGAN--VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163

Query: 123 NNSNESPLHLAAR 135
           + +  +    A  
Sbjct: 164 DLTGLTAEASARI 176

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.0 bits (178), Expect = 6e-17
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 3   GADL--NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
             D   N  D   R+PL++A   G    +  LV N   +  KDI     L   V N    
Sbjct: 23  NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNN--R 80

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
           +      +A   L     S+G    +N KD +G +PL ++   G+      L+  GA +N
Sbjct: 81  L-----GIAEKLL-----SKGSN--VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128

Query: 121 LKNNSNESPLHLAAR 135
            +N   E+PL +A++
Sbjct: 129 DRNLEGETPLIVASK 143

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.6 bits (151), Expect = 6e-13
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 20/129 (15%)

Query: 7   NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
           + +DK       +   +   + +            +D   R  L +  + G         
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNL------DFLRNYRDSYNRTPLMVACMLG--ME----- 48

Query: 67  EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN 126
                 +         +  L +KD  G + L +A +   +   E L++ G+ +N K+ S 
Sbjct: 49  NAIDKLV-----ENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101

Query: 127 ESPLHLAAR 135
           ++PL  +  
Sbjct: 102 KTPLMWSII 110

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.5 bits (130), Expect = 6e-10
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G+++N  D   ++PL+ +   G  +    L+ + AN+  +++     L +    G     
Sbjct: 91  GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG--RS- 147

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI 106
               E+    L       G    ++ +D TG +    A   G  
Sbjct: 148 ----EIVKKLL-----ELGAD--ISARDLTGLTAEASARIFGRQ 180

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.2 bits (186), Expect = 2e-17
 Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 27/147 (18%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI----------LHL 52
           GAD+N  D    +  + AA  G  K +  L +  AN+ L+   + +           L  
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 53  LVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN- 111
               G  H+     EV  + L E  A       +N  D  G + L +A        +E  
Sbjct: 155 AAEKG--HV-----EVLKILLDEMGAD------VNACDNMGRNALIHALLSSDDSDVEAI 201

Query: 112 ---LINLGACINLKNNSNESPLHLAAR 135
              L++ GA +N++    ++PL LA  
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVE 228

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 73.7 bits (182), Expect = 6e-17
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 22/145 (15%)

Query: 3   GADLNVLDKEK----------RSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILH 51
           GA++N+  K K           + L+ AA +G  + +  L+    A++   D   RN L 
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 52  LLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN 111
             +L+         E +  + L       G    +N + + G +PL  A  + H+  ++ 
Sbjct: 188 HALLSSD---DSDVEAITHLLL-----DHGAD--VNVRGERGKTPLILAVEKKHLGLVQR 237

Query: 112 LI-NLGACINLKNNSNESPLHLAAR 135
           L+      IN  ++  ++ L LA  
Sbjct: 238 LLEQEHIEINDTDSDGKTALLLAVE 262

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.9 bits (167), Expect = 7e-15
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 15/127 (11%)

Query: 10  DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEV 68
             E    L+ A        V  L+   AN+  ++       LH  V           E++
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS--R-----EDI 54

Query: 69  AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES 128
             + L       G       + K G +P   A+  G +  L+  ++ GA +N  +    +
Sbjct: 55  VELLL-----RHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107

Query: 129 PLHLAAR 135
               AA 
Sbjct: 108 AFMEAAV 114

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.3 bits (163), Expect = 3e-14
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 25/144 (17%)

Query: 3   GADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GA++N  ++E   +PL  A        V  L+R+ A+ +L+  N      L  + G   +
Sbjct: 28  GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG--SV 85

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                ++  +FL     S+G    +NE D  G +    A+  G + +L+ L   GA +NL
Sbjct: 86  -----KLLKLFL-----SKGAD--VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

Query: 122 KNNSNES----------PLHLAAR 135
           +  + E            L  AA 
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAE 157

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.4 bits (158), Expect = 1e-13
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 17/126 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVR----NKANILLKDINRRNILHLLVLNGG 58
           GAD+N  D   R+ L+ A        V  +      + A++ ++    +  L L V    
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK- 230

Query: 59  GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC 118
            H+      +    L +          +N+ D  G + L  A         E L   GA 
Sbjct: 231 -HL-----GLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 119 INLKNN 124
            +  + 
Sbjct: 279 TDCGDL 284

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.6 bits (177), Expect = 2e-17
 Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 14/122 (11%)

Query: 14  RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
           R+PL LAA  G  + V  L+   A++  KD N R  LHL   NG  H+     EV  + L
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKLLL 55

Query: 74  GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
                  G    +N KDK G +PLH A+R GH+  ++ L+  GA +N K+ +  +PLHLA
Sbjct: 56  -----EAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

Query: 134 AR 135
           AR
Sbjct: 109 AR 110

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.7 bits (146), Expect = 1e-12
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 14/115 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  DK  R+PL LAA  G  + V  L+   A++  KD N R  LHL   NG  H+ 
Sbjct: 25  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL- 81

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
               EV  + L       G    +N KDK G +PLH A+R GH+  ++ L+  GA
Sbjct: 82  ----EVVKLLL-----EAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.2 bits (124), Expect = 2e-09
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           G +PLH A+R GH+  ++ L+  GA +N K+ +  +PLHLAAR
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 72.1 bits (178), Expect = 3e-17
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 16/133 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
               + L++  ++ L +    G     L L++  A+  ++D +  + +H     G   + 
Sbjct: 26  LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG--FL- 81

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +   V +  G A       +N  D TG  P+H A +EGH   +  L    + ++ +
Sbjct: 82  ----DTLKVLVEHG-AD------VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRR 129

Query: 123 NNSNESPLHLAAR 135
           +    +PL LA +
Sbjct: 130 DARGLTPLELALQ 142

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.1 bits (165), Expect = 3e-15
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 16/121 (13%)

Query: 16  PLLLAASRGGWKTVLTLV-RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
            L  AA+RG  + V  L+ R   +    +   +  L +++    G        +A   L 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF---GST-----AIALELLK 56

Query: 75  EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +G AS       N +D +G SP+H A+R G + +L+ L+  GA +N+ + +   P+HLA 
Sbjct: 57  QG-AS------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109

Query: 135 R 135
           +
Sbjct: 110 Q 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.0 bits (178), Expect = 4e-17
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             ++N  +   R+ L      G  +    L+   AN  LKD     ++H     G   + 
Sbjct: 28  NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG--FL- 83

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INL 121
               +     L            +N +D  G  PLH A++EGH+  +E L+   A  +  
Sbjct: 84  ----DTLQTLL-----EFQAD--VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132

Query: 122 KNNSNESPLHLAAR 135
           +N+  ++   LA  
Sbjct: 133 RNHKGDTACDLARL 146

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.8 bits (167), Expect = 1e-15
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 15/120 (12%)

Query: 16  PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 75
            L  AA+RG  + + +L++N  N+  ++   R  L ++ L   G+      E+A   L  
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---GNP-----EIARRLL-- 57

Query: 76  GEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
               +G     + KD+TG + +H A+R G + +L+ L+   A +N+++N    PLHLAA+
Sbjct: 58  ---LRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.2 bits (150), Expect = 5e-13
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA+ ++ D+   + +  AA  G   T+ TL+  +A++ ++D      LHL    G  H+ 
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--HL- 116

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
                V    +          N+   ++  G +    A   G    +  +   GA
Sbjct: 117 ----RVVEFLV-----KHTASNV-GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.7 bits (182), Expect = 6e-17
 Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 16/133 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA +   + +  SP+  AA RG  + V +L+    NI  K  +    L+L   N      
Sbjct: 148 GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ--QR- 203

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                     L  G A          + K   SPLH   R         L++ GA    K
Sbjct: 204 ----ACVKKLLESG-ADV-------NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251

Query: 123 NNSNESPLHLAAR 135
           N   + P+ L   
Sbjct: 252 NAEGKRPVELVPP 264

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 72.1 bits (178), Expect = 2e-16
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 15/133 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G  +N++  +  SPL  A   G    V  L+++ A +     +    L    ++  G   
Sbjct: 82  GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS--GSW- 138

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +   + L  G AS  +     + +    SP+H A+R GH+  + +LI  G  I+ K
Sbjct: 139 ----DCVNLLLQHG-AS--V-----QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186

Query: 123 NNSNESPLHLAAR 135
            +   +PL+LA  
Sbjct: 187 ISHLGTPLYLACE 199

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 15/131 (11%)

Query: 5   DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 64
            L        SP+  AA  G   ++  L+     + +   +  + LH   L G  H+   
Sbjct: 51  PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG--HL--- 105

Query: 65  AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNN 124
                 + L       G Q  +N       +PL  A   G    +  L+  GA +  +++
Sbjct: 106 --SCVKILL-----KHGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156

Query: 125 SNESPLHLAAR 135
              SP+H AAR
Sbjct: 157 -LASPIHEAAR 166

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 66.0 bits (162), Expect = 5e-14
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 16/117 (13%)

Query: 19  LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEA 78
           + +S         LV   +++   D  +  +            ++F              
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPA----GPRDFPGIRL--------- 47

Query: 79  SQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
              + N L     +  SP+H A+  GH +SL NLI+ G  +N+    + SPLH A  
Sbjct: 48  ---LSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 16/133 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G+ +  +D ++        +       + L+ N        ++  + +H   ++G  H  
Sbjct: 18  GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG--DAVSDWSPMHEAAIHG--HQ- 72

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
                     +     SQG    +N       SPLH A   GH+  ++ L+  GA +N  
Sbjct: 73  ----LSLRNLI-----SQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 123 NNSNESPLHLAAR 135
                +PL  A  
Sbjct: 122 TADWHTPLFNACV 134

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 16/118 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G +++       +PL LA        V  L+ + A++  +   + + LH +V        
Sbjct: 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTA--SE- 235

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
               E+A + +       G       K+  G  P+     E  +  L  L   GA + 
Sbjct: 236 ----ELACLLM-----DFGAD--TQAKNAEGKRPVELVPPESPLAQLF-LEREGASLP 281

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
           G D +  D +  + L  A   G  +TV   V+    ++       +   +  V+     +
Sbjct: 85  GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN--DV 142

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                 + + FL E  +                S +H   + GH+  +  L++     N 
Sbjct: 143 -----SIVSYFLSEIPS--------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189

Query: 122 KNNSNESP-LHLAAR 135
            N+    P + LA  
Sbjct: 190 NNSLLFIPDIKLAID 204

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 68.3 bits (168), Expect = 5e-15
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 17/134 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             D    D    S    A +    + V TL+   A   L +      LH           
Sbjct: 21  SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL--EDT- 75

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               ++  + L  G          ++ D  G + L+YA   G++ +++  +     +   
Sbjct: 76  ----KIVKILLFSG-LD------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 123 NNSN-ESPLHLAAR 135
             +  ++  + A  
Sbjct: 125 GKTGWKTSFYHAVM 138

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.1 bits (131), Expect = 7e-10
 Identities = 14/118 (11%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 18  LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE 77
           L   +    K + + + +  +    D++  +  +  + +   ++      +    L    
Sbjct: 4   LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADN--NV-----RLVCTLL---- 51

Query: 78  ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            + G     N  +     PLH A+       ++ L+  G   +  ++   + L+ A  
Sbjct: 52  -NAGAL--KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 12/161 (7%), Positives = 32/161 (19%), Gaps = 43/161 (26%)

Query: 3   GADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
              L    K   ++    A        V   +    +         + +H+ + NG  H+
Sbjct: 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNG--HV 174

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSP------------------------- 96
                ++  + L             N  +     P                         
Sbjct: 175 -----DMMILLL-----DYMTS--TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222

Query: 97  --LHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                          + +I         + + +  +    +
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 22/123 (17%)

Query: 3   GADLNVLDKEKRSPLL-LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
               N  +     P + LA      + +  L +   NI   +          VL      
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN-------LENVLLD---- 232

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                E+A + +      + ++        T    +   ++   IIS    + L     +
Sbjct: 233 ---DAEIAKMII-----EKHVE--YKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282

Query: 122 KNN 124
           K N
Sbjct: 283 KKN 285

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.0 bits (170), Expect = 3e-16
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G D    +    + L +A+ +G   +V  L++N ++  +KD      LH    +G  H+ 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG--HL- 56

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +V  + L    A       +N       SPLH A++ GH+  ++ L++ GA  N  
Sbjct: 57  ----KVVELLLQHK-AL------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105

Query: 123 NNSNESPLHLAAR 135
           N     P+     
Sbjct: 106 NIFGLRPVDYTDD 118

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.3 bits (93), Expect = 6e-05
 Identities = 17/115 (14%), Positives = 24/115 (20%), Gaps = 47/115 (40%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A +N    +  SPL  AA  G    V  L+   A+                        
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR----------------------- 102

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
                                   N  +  G  P+ Y   E     L       +
Sbjct: 103 ------------------------NAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 68.2 bits (168), Expect = 4e-16
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G       K+  +PL  AA  G  + V  L+   A++  +  +    LHL   NG  H  
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HA- 55

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  + L     ++G    +N + K G +P H A + GH   ++ L   GA +N +
Sbjct: 56  ----EIVKLLL-----AKGAD--VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 123 NNSNESPLH 131
           +  +    H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.0 bits (139), Expect = 7e-12
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           N + K G +PLH A++ GH   ++ L+  GA +N ++    +P HLA +
Sbjct: 36  NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.9 bits (131), Expect = 1e-10
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
               K G +PLH A++ GH   ++ L++ GA +N ++    +PLHLAA+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 4e-08
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N   K+  +PL LAA  G  + V  L+   A++  +  +     HL   NG  H  
Sbjct: 32  GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG--HH- 88

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHY 99
               E+  +       ++G    +N +        H+
Sbjct: 89  ----EIVKLLD-----AKGAD--VNARSWGSSHHHHH 114

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.4 bits (173), Expect = 5e-16
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)

Query: 3   GADLNVLDKEKRSP---LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
                   + + +P   LL AA  G  + V   V+   +    +      LH  +     
Sbjct: 8   AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA-- 65

Query: 60  HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
           +       +    +     + G    +N  D  G +PLH A+     +    L+  GA I
Sbjct: 66  NY-----SIVDFLI-----TAGAN--VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

Query: 120 NLKNNSN-ESPLHLAAR 135
                S+  +       
Sbjct: 114 FATTLSDGATAFEKCDP 130

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
           GA++N  D    +PL  AAS       + LV++ A I    ++              G+ 
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY- 135

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                + A       ++       +   +      L   S E     L         +  
Sbjct: 136 ----ADCATYLADVEQS-------MGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLR 183

Query: 122 KNNSNESPLHLAAR 135
           ++   E+    AA 
Sbjct: 184 RDGPEETDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 59.6 bits (145), Expect = 6e-12
 Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 17/136 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             D +  ++E  + L  A     +  V  L+   AN+   D +    LH           
Sbjct: 44  MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN--DT- 100

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKD-KTGCSPLHYAS--REGHIISLENLINLGACI 119
                +    +       G    +       G +        REG+      L ++   +
Sbjct: 101 ----VICMALV-----QHGAA--IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 120 NLKNNSNESPLHLAAR 135
            L N+     L   + 
Sbjct: 150 GLMNSGAVYALWDYSA 165

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.1 bits (136), Expect = 9e-11
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 32  LVRNKANILLKDINRRNILHLL---VLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNE 88
           ++R   +       R N L LL    L G   +     EV    + E           ++
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTG--EL-----EVVQQAVKEM-ND------PSQ 49

Query: 89  KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            ++ G + LH A    +   ++ LI  GA +N  ++   +PLH AA 
Sbjct: 50  PNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.8 bits (167), Expect = 8e-16
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G+DL          LL AA  G    V  L+ N A++  KD      L+L   +G  H+ 
Sbjct: 11  GSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HL- 60

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+  V L       G    +N  D  G +PLH A+  GH+   E L+  GA +N +
Sbjct: 61  ----EIVEVLL-----KNGAD--VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109

Query: 123 NNSNESPLHLAAR 135
           +   ++   ++  
Sbjct: 110 DKFGKTAFDISIG 122

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.4 bits (127), Expect = 8e-10
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+N  D+   +PL LA + G  + V  L++N A++   D      LHL    G  H+ 
Sbjct: 37  GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG--HL- 93

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI 113
               E+A V L       G    +N +DK G +    +   G+    E L 
Sbjct: 94  ----EIAEVLL-----KHGAD--VNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.5 bits (166), Expect = 2e-15
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 18/134 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A  +   +     L  AA+RG  + V  L+   AN    +   R  + ++++   G   
Sbjct: 4   AAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---GSA- 57

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC-SPLHYASREGHIISLENLINLGACINL 121
                VA + L  G A        N  D      P+H A+REG + +L  L   GA +++
Sbjct: 58  ----RVAELLLLHG-AE------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 122 KNNSNESPLHLAAR 135
           ++     P+ LA  
Sbjct: 107 RDAWGRLPVDLAEE 120

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 63.3 bits (155), Expect = 6e-14
 Identities = 24/134 (17%), Positives = 38/134 (28%), Gaps = 21/134 (15%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
           GA+ N  +   R P+ +    G  +    L+ + A     D       +H     G   +
Sbjct: 35  GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG--FL 91

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                +   V    G A       L+ +D  G  P+  A   GH      L         
Sbjct: 92  -----DTLVVLHRAG-AR------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139

Query: 122 KNNSNESPLHLAAR 135
            N        + A 
Sbjct: 140 SN-----HARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 3   GADLNVLDKEKR-SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GA+ N  D      P+  AA  G   T++ L R  A + ++D   R  + L    G  H 
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG--H- 123

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
                +VA                       G +     + EG 
Sbjct: 124 ----RDVARYLRAAA------------GGTRGSNHARIDAAEGP 151

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.4 bits (168), Expect = 3e-15
 Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 13/133 (9%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             D ++ + E  + L  A   G  + V  LV+   N+   D +    LH        ++ 
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN--NV- 116

Query: 63  EFAEEVAAVFLGEGEASQGIQ-NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
               +V    +       G     +   D    +       EG+    + L  +   + +
Sbjct: 117 ----QVCKFLV-----ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167

Query: 122 KNNSNESPLHLAA 134
            N      L    
Sbjct: 168 MNKGVIYALWDYE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 15/126 (11%)

Query: 10  DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
           +   +  L         KT    + +   +         +L    L G         ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEG--EF-----DLV 53

Query: 70  AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESP 129
              +      +      +  +  G + LH A   GH   ++ L+  G  +N  ++   +P
Sbjct: 54  QRII-----YEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106

Query: 130 LHLAAR 135
           LH AA 
Sbjct: 107 LHCAAS 112

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 18/135 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
           G ++N  D +  +PL  AAS    +    LV + A +     +  +           G+ 
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                + +    G  E        +   +K     L     +      E  +  G C+ +
Sbjct: 153 -----QCSQFLYGVQEK-------MGIMNKGVIYALWDYEPQND---DELPMKEGDCMTI 197

Query: 122 --KNNSNESPLHLAA 134
             + + +E     A 
Sbjct: 198 IHREDEDEIEWWWAR 212

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.3 bits (158), Expect = 1e-14
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 9   LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 68
           L        + A   G    V   V    ++       R  LH     G   +     E+
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG--QL-----EI 55

Query: 69  AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES 128
               L +G A       +N  DK   +PL  A  EGH+  ++ L++ GA   +K     +
Sbjct: 56  LEFLLLKG-AD------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108

Query: 129 PLHLAAR 135
                  
Sbjct: 109 AFEATDN 115

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            +     D++ R+ L  A S G  + V  L++    +  KD    + LH+    G     
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX---- 85

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
              +E+    L +G         +N  ++ GC+PLHYA+ +        L+  GA  + K
Sbjct: 86  ---DEIVKALLVKGAH-------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135

Query: 123 NNSNESPLHLAAR 135
           ++ + + +H AA 
Sbjct: 136 DHYDATAMHRAAA 148

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G  +N  D    SPL +AAS G  + V  L+   A++   + N    LH           
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN----- 117

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               E+A + L  G          + KD    + +H A+ +G++  +  L+   A  N++
Sbjct: 118 --RHEIAVMLLEGGAN-------PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168

Query: 123 NNSNESPLHLAAR 135
           +    +PLHLA  
Sbjct: 169 DTEGNTPLHLACD 181

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.5 bits (144), Expect = 6e-12
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 16  PLLLAASRGGWK-TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
            +   A  G        ++ +K+     D + R  LH     G  H      E+    L 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG--HT-----EIVEFLL- 60

Query: 75  EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
                 G+   +N+KD  G SPLH A+  G    ++ L+  GA +N  N +  +PLH AA
Sbjct: 61  ----QLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114

Query: 135 R 135
            
Sbjct: 115 S 115

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 42  KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
             ++   I +L             +E+    L     +          D+   + LH+A 
Sbjct: 3   GCVSNIMICNLAYSGKL-------DELKERIL-----ADKSL--ATRTDQDSRTALHWAC 48

Query: 102 REGHIISLENLINLGACINLKNNSNESPLHLAAR 135
             GH   +E L+ LG  +N K+++  SPLH+AA 
Sbjct: 49  SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 16/119 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA+ +  D    + +  AA++G  K V  L+  KA+  ++D      LHL          
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE----- 183

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
               E A   + +G +       +  ++K   +PL  A     +I     +  G   ++
Sbjct: 184 --RVEEAKFLVTQGAS-------IYIENKEEKTPLQVAKGGLGLILK--RLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 6/48 (12%), Positives = 14/48 (29%)

Query: 88  EKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           E   +     + A         E ++   +     +  + + LH A  
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACS 49

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.9 bits (159), Expect = 5e-14
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 32/151 (21%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-----LHLLVLNG 57
           G +++       + L +AA     +  + L+     ++ + +          LH+ V+N 
Sbjct: 27  GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86

Query: 58  GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK-------------TGCSPLHYASREG 104
             ++      +    L     ++G    ++ +                G  PL +A+  G
Sbjct: 87  --NV-----NLVRALL-----ARGAS--VSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132

Query: 105 HIISLENLINLGACINLKNNSNESPLHLAAR 135
               +  LI  GA I  +++   + LH+   
Sbjct: 133 SEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 29/138 (21%)

Query: 15  SPLLLAASRGGWKTVLT-LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
           SPLLLAA     + +   L      +  +       LH+  L           E A V +
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD-------NLEAAMVLM 57

Query: 74  GEGEASQGI---QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN---- 126
                          +  +   G + LH A    ++  +  L+  GA ++ +   +    
Sbjct: 58  -----EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY 112

Query: 127 ---------ESPLHLAAR 135
                    E PL  AA 
Sbjct: 113 RPHNLIYYGEHPLSFAAC 130

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 93  GCSPLHYASREGHIISL-ENLINLGACINLKNNSNESPLHLAAR 135
             SPL  A++E  + +L + L   G  ++ +    E+ LH+AA 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.8 bits (158), Expect = 9e-14
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 18/151 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG--- 59
            A       +  S L +A  +   + V  LV N A++ L+   R    H       G   
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 60  -HI--KEFAEEVAAVFL--GEGEASQGIQN----------LLNEKDKTGCSPLHYASREG 104
             +       +V    L      AS    +          ++   +    S L     +G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 105 HIISLENLINLGACINLKNNSNESPLHLAAR 135
            +     L        + N+   +PL LAA+
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 2   TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNGG 58
                         PL LAA    W  V  L+ N    A++   D     +LH LV+   
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 59  GHIKEFAEEVAAVFLGEGEASQGIQN--LLNEKDKTGCSPLHYASREGHIISLENLINLG 116
              +  A  +          ++      L    +  G +PL  A++EG I    +++   
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 117 ACINLKNNSN 126
                 ++ +
Sbjct: 245 FSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 21/143 (14%)

Query: 14  RSPLLLAASRGGWKTVLTLV--------RNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
           R  L    SRG  + +  L+            +   +    +  L   VLN    +    
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
             +  +    G     +     ++   G S LH A  +  +  ++ L+  GA ++L+   
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 126 N-------------ESPLHLAAR 135
                         E PL LAA 
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC 145

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
             D++ +D+  R+ LL  A  G  K V  L    A++  +D+      LH+         
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV--R- 123

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                EV    +       G    +  +D+ G + L  A          N +  G  I L
Sbjct: 124 ----PEVVEALV-----ELGAD--IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172

Query: 122 KNNSNESPLHLAA 134
           +       +    
Sbjct: 173 EKV---INVLEGQ 182

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 13/142 (9%)

Query: 3   GADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
           GADL+  D     + L +AA     + V  LV   A+I ++D      L L         
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 159

Query: 62  KEF---------AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENL 112
           K            E+V  V  G+      +  +  EK   G    +    +         
Sbjct: 160 KGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEI-VEKRGKGKDVEYLVRWKDGGDCEWVK 218

Query: 113 INLGACINLKNNSNESPLHLAA 134
               A    K+   E  L  A 
Sbjct: 219 GVHVAEDVAKD--YEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 19/134 (14%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            AD+     E  +P   AA +   + +  L+    ++   D N R  L  +   G     
Sbjct: 38  AADVV---SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLG--S-- 89

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKD-KTGCSPLHYASREGHIISLENLINLGACINL 121
              ++   +         G    L+ +D + G + LH A+       +E L+ LGA I +
Sbjct: 90  ---DKCVRLLA-----EAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139

Query: 122 KNNSNESPLHLAAR 135
           ++    + L LA  
Sbjct: 140 EDERGLTALELARE 153

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 19/130 (14%)

Query: 7   NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
           +    E     L+    G   + +      A++                          E
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARK--AD-----E 58

Query: 67  EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN-NS 125
           +  +  L      +     ++  D+ G + L + +  G    +  L   GA ++ ++   
Sbjct: 59  QALSQLL------EDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 126 NESPLHLAAR 135
             + LH+AA 
Sbjct: 111 GLTALHMAAG 120

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 38/126 (30%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN----------------------IL 40
           GAD+ V D+   + L LA            ++                          I+
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV 193

Query: 41  LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA 100
            K    +++ +L+    GG  +                    ++    KD      L YA
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVK------------GVHVAED--VAKDYE--DGLEYA 237

Query: 101 SREGHI 106
             E  I
Sbjct: 238 VAESVI 243

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 15/122 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
             D++ +D+  R+ LL  A  G  K V  L    A++  +D+      LH+         
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV--R- 122

Query: 62  KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
                EV    +       G    +  +D+ G + L  A          N +  G  I L
Sbjct: 123 ----PEVVEALV-----ELGAD--IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

Query: 122 KN 123
           + 
Sbjct: 172 EK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.0 bits (149), Expect = 7e-13
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 19/134 (14%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            AD+     E  +P   AA +   + +  L+ +  ++   D N R  L  +   G     
Sbjct: 37  AADVV---SEYETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLG--S-- 88

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKD-KTGCSPLHYASREGHIISLENLINLGACINL 121
              ++   +         G    L+ +D + G + LH A+       +E L+ LGA I +
Sbjct: 89  ---DKCVRLLA-----EAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138

Query: 122 KNNSNESPLHLAAR 135
           ++    + L LA  
Sbjct: 139 EDERGLTALELARE 152

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 19/134 (14%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
               +    E     L+    G   + +      A+++ +                    
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARK--AD-- 56

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
              E+  +  L      +     ++  D+ G + L + +  G    +  L   GA ++ +
Sbjct: 57  ---EQALSQLL------EDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105

Query: 123 N-NSNESPLHLAAR 135
           +     + LH+AA 
Sbjct: 106 DMRGGLTALHMAAG 119

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.5 bits (143), Expect = 1e-12
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           N KDK G +PLH A+R GH+  ++ L+  GA +N K+ +  +PLHLAAR
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.4 bits (122), Expect = 1e-09
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           G +PLH A+R GH+  ++ L+  GA +N K+ +  +PLHLAAR
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.0 bits (113), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)

Query: 14  RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
           R+PL LAA  G  + V  L+   A++  KD N R  LHL   NG  H+     EV  + L
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKLLL 55

Query: 74  GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
             G A       +N KDK G +PLH A+R GH+  ++ L+  GA
Sbjct: 56  EAG-AD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.2 bits (146), Expect = 5e-12
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 32/160 (20%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTV-------LTLVRNKANILLKDINR-RNILHLLV 54
            A         R  +  A ++   + +           +   +   KD    +  L   +
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 55  LNGG-GHIKEFAEEVAAVFLGEGEASQGIQNLLN----EKDKTGCSPLHYASREGHIISL 109
           LN   G       +  A+ L     +  ++  +N    +    G + LH A    ++  +
Sbjct: 63  LNLHNGQ-----NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLV 117

Query: 110 ENLINLGACINLKNNSN--------------ESPLHLAAR 135
             L+  GA +    N +              E PL LAA 
Sbjct: 118 TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 12/140 (8%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 57
                          PL LAA       V  L++N    A+I  +D     +LH LV   
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

Query: 58  GGHIKEFAEEVAAVFLGEGEASQGIQN--LLNEKDKTGCSPLHYASREGHIISLENLINL 115
              +       +         ++      L    ++ G +PL  A+  G I  L  ++  
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 116 GACINLKNNSNESPLHLAAR 135
                          H AA 
Sbjct: 256 EI-------HEPECRHAAAH 268

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.4 bits (144), Expect = 8e-12
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 22/144 (15%)

Query: 14  RSPLLLAASRGGWKTVLTLV----RNKANILLKDINRRN----ILHLLVLNGGGHIKEFA 65
           R  L    SRG    +  L+     +K  +  ++    +     L   +LN      +  
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
             +  +    G   + I +   +    G + LH A        +E L+  GA ++ +   
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 126 N--------------ESPLHLAAR 135
                          E PL LAA 
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAAC 149

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 57
               D          PL LAA       V  L  N   +A++  +D     +LH LV   
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187

Query: 58  GGH--IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINL 115
                  +F  ++  + L +        NL    +  G SPL  A++ G I   +++I  
Sbjct: 188 DNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

Query: 116 GACIN 120
                
Sbjct: 248 EIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 25/162 (15%), Positives = 42/162 (25%), Gaps = 41/162 (25%)

Query: 4   ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-------------- 49
           +    +    ++ L +A  R     V  LV   A++  +   R                 
Sbjct: 84  SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP 143

Query: 50  LHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---- 105
           L L               +       G     +      +D  G + LH           
Sbjct: 144 LSLAACTN-------QPHIVHYLTENGHKQADL----RRQDSRGNTVLHALVAIADNTRE 192

Query: 106 -----IISLENLINLGACIN-------LKNNSNESPLHLAAR 135
                    + L+   A +        L NN   SPL +AA+
Sbjct: 193 NTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 17/116 (14%)

Query: 20  AASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS 79
            +S         LV   +++     +    L      G        ++   + +     +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAG--Q-----DDEVRILM-----A 45

Query: 80  QGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            G    +  KDK G +PLH A+R GH+  ++ L+  GA +  ++   ++   ++  
Sbjct: 46  NGAD--VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GAD+   DK   +PL LAA  G  + V  L+   A++  +D   +    + + NG   + 
Sbjct: 47  GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106

Query: 63  EFAE 66
           E  +
Sbjct: 107 EILQ 110

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           L+++   G + LHY     +   L+ L+   A I + N S E+PL +A R
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 10/61 (16%), Positives = 23/61 (37%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
             +L+    +  + L         + +  L+R KA+I + + +    L +       H +
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 254

Query: 63  E 63
           E
Sbjct: 255 E 255

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 8e-07
 Identities = 18/134 (13%), Positives = 31/134 (23%), Gaps = 13/134 (9%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI--LHLLVLNGGGH 60
              + V+  E      LAA  G    +  L       ++  I   N     L   NG  H
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG--H 175

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
           +      V                    + +   +    A   GH   +  L++    + 
Sbjct: 176 L-----HVLNRLCELAPTEATA----MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

Query: 121 LKNNSNESPLHLAA 134
                         
Sbjct: 227 YAEIHEFEYGEKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 14/145 (9%)

Query: 3   GADLNV--LDKEKRSPLLLAASRGG-WKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
                   +  E       AA   G    +  L+     +   +I+        V     
Sbjct: 186 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN--PF 243

Query: 60  HIKEFAEEVAAVFLGEGEASQGIQNLLN-EKDKTGCSPLHYASREGHIISLENLINL--- 115
             +            +     G+ +L+   +   G   L    R    + L+++  L   
Sbjct: 244 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303

Query: 116 -----GACINLKNNSNESPLHLAAR 135
                 A            L LA R
Sbjct: 304 PGIKALAPTATIPGDANELLRLALR 328

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 17/138 (12%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
           M    ++ ++  +  P L       W+ +     +   + L  ++ +  +H+  L G  +
Sbjct: 1   MCNLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIF-LPGTKN 59

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLE---NLINLGA 117
           +++  + +   +      ++ + +  ++K          A+  G   +L+    L+    
Sbjct: 60  MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE 119

Query: 118 CINLKNNSNESPLHLAAR 135
            + +    N     LAA 
Sbjct: 120 IVKVIQAENYQAFRLAAE 137

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 2/52 (3%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN--NSNESPLHLAAR 135
           +             A+  GH+  L  L  L     +      N     LAA 
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 172

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                     L  A R G+  +   L+++ + + L   +N    ++   
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINET 358

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           L+ K   G + LHYA+       L+ L+   A +   N + E+ L +A +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +N+ D  G  PLH+A+  GH       +  GA +  +++    PL +A  
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 90  DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            +   +PL  A+    +++ E L+  GA +N  +++   PLH A  
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 43  DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNL--LNEKDKTGCSPLHYA 100
                 +LHL V           +     F+        IQN   L+ K   G + LHYA
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVD-----FI--------IQNGGHLDAKAADGNTALHYA 214

Query: 101 SREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +       L+ L+   A +   N + E+ L +A +
Sbjct: 215 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.98
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.1e-35  Score=171.06  Aligned_cols=119  Identities=34%  Similarity=0.494  Sum_probs=110.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+|+|.+|.+|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++++       +.+..   
T Consensus        26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-------~~gad---   95 (169)
T 4gpm_A           26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-------SKGAD---   95 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-------HTTCC---
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHH-------HCcCC---
Confidence            69999999999999999999999999999999999999999999999999999999866655554       34444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+
T Consensus        96 ----vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~  144 (169)
T 4gpm_A           96 ----VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR  144 (169)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence                7888999999999999999999999999999999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.98  E-value=3.5e-32  Score=154.15  Aligned_cols=118  Identities=24%  Similarity=0.275  Sum_probs=104.8

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      |+|+ .+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..    
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-------~g~~----   68 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-------HKAL----   68 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC----
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCc----
Confidence            7888 789999999999999999999999999999999999999999999999998766665554       3333    


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                         ++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|++
T Consensus        69 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           69 ---VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             ---TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCC
T ss_pred             ---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence               67788899999999999999999999999999999999999999999874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=2.4e-32  Score=154.67  Aligned_cols=117  Identities=25%  Similarity=0.313  Sum_probs=107.3

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      +.++|.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+. ++.++++++...       +..    
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-------g~~----   69 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-------GAE----   69 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-------TCC----
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-------CCC----
Confidence            67999999999999999999999999999999999999999999999999999 987776666653       333    


Q ss_pred             hhhhhccCCC-CCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          83 QNLLNEKDKT-GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        83 ~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                         ++..+.. |+||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        70 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  119 (136)
T 1d9s_A           70 ---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE  119 (136)
T ss_dssp             ---SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH
T ss_pred             ---CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence               6778888 999999999999999999999999999999999999999986

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.3e-31  Score=165.10  Aligned_cols=127  Identities=25%  Similarity=0.368  Sum_probs=94.1

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH-------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV-------------   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~-------------   68 (135)
                      +|+|+|.+|.+|.||||+|+..|+.+++++|++.|++++.++..|.||+++|+..++.++++++...             
T Consensus        75 ~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~T  154 (269)
T 4b93_B           75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNT  154 (269)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCC
Confidence            5888888888888888888888888888887777666655555555555555555544444443321             


Q ss_pred             -------------HHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          69 -------------AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        69 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                                   ...+++.+..       ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~gad-------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQHGAS-------INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCC-------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCC-------CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence                         1111122222       67788899999999999999999999999999999999999999999974

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=5.5e-31  Score=168.09  Aligned_cols=134  Identities=26%  Similarity=0.297  Sum_probs=108.0

Q ss_pred             CCCCccc-cccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCC---CchHHHHHHHH-HHHhcC-
Q psy8766           2 TGADLNV-LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG---GHIKEFAEEVA-AVFLGE-   75 (135)
Q Consensus         2 ~g~~~n~-~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~~~~~~~-~~~~~~-   75 (135)
                      +|+|+|. +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+   .+.+..+.... ...... 
T Consensus       119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d  198 (327)
T 1sw6_A          119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  198 (327)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence            5899999 89999999999999999999999999999999999999999999999887   44444444332 100000 


Q ss_pred             --Cc--------------chhhh---------------------------------------------------hhhhhc
Q psy8766          76 --GE--------------ASQGI---------------------------------------------------QNLLNE   88 (135)
Q Consensus        76 --~~--------------~~~~~---------------------------------------------------~~~~~~   88 (135)
                        +.              ....+                                                   ...++.
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~  278 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  278 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCC
Confidence              00              00000                                                   002667


Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        89 ~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      .+..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++
T Consensus       279 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            88899999999999999999999999999999999999999999985

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=167.25  Aligned_cols=123  Identities=24%  Similarity=0.318  Sum_probs=80.1

Q ss_pred             CccccccCCChHHHHHHHhCCHH-HHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHH-------------
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA-------------   70 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~-~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~-------------   70 (135)
                      .++..+..|.|||+.|+..+..+ ++++|++.|++++.+|..|.||||+|+..|+.+++++++....             
T Consensus        44 ~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l  123 (269)
T 4b93_B           44 TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPL  123 (269)
T ss_dssp             -------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcc
Confidence            46778889999999999887764 7899999999999999999999999999999999988876321             


Q ss_pred             -------------HHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          71 -------------VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        71 -------------~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                                   .++..+..       ++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus       124 ~~a~~~~~~~~~~~Ll~~g~~-------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~  193 (269)
T 4b93_B          124 HLACQQGHFQVVKCLLDSNAK-------PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV  193 (269)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-------SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             ccccccChHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH
Confidence                         12222222       5667889999999999999999999999999999999999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=5.9e-31  Score=153.85  Aligned_cols=119  Identities=31%  Similarity=0.408  Sum_probs=109.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..   
T Consensus        36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-------~g~~---  105 (169)
T 2y1l_E           36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-------NGAD---  105 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            589999999999999999999999999999999999999999999999999999998766665554       3333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus       106 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E          106 ----VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI  154 (169)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence                6778889999999999999999999999999999999999999999986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.5e-30  Score=153.42  Aligned_cols=119  Identities=29%  Similarity=0.312  Sum_probs=108.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .+.++|.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..   
T Consensus        28 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~---   97 (179)
T 3f6q_A           28 TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-------YKAD---   97 (179)
T ss_dssp             TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            367899999999999999999999999999999999999999999999999999998666665554       3433   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus        98 ----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  146 (179)
T 3f6q_A           98 ----INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK  146 (179)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC
T ss_pred             ----CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH
Confidence                6788899999999999999999999999999999999999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.6e-30  Score=151.64  Aligned_cols=119  Identities=29%  Similarity=0.360  Sum_probs=109.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .|.++|.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.++++++...       +..   
T Consensus        25 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~---   94 (167)
T 3v31_A           25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC-------GVD---   94 (167)
T ss_dssp             HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-------TCC---
T ss_pred             cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC-------CCC---
Confidence            4788999999999999999999999999999999999999999999999999999987777666654       333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+
T Consensus        95 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  143 (167)
T 3v31_A           95 ----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV  143 (167)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence                6778899999999999999999999999999999999999999999986

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=3.3e-30  Score=150.06  Aligned_cols=120  Identities=24%  Similarity=0.272  Sum_probs=107.9

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .+.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..   
T Consensus        31 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~---  100 (165)
T 3twr_A           31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-------HGAV---  100 (165)
T ss_dssp             TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHh-------CCCC---
Confidence            356778888899999999999999999999999999999999999999999999998766665554       3433   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                          ++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|.+
T Consensus       101 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A          101 ----VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             ----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT
T ss_pred             ----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc
Confidence                67788999999999999999999999999999999999999999999864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.2e-30  Score=151.40  Aligned_cols=106  Identities=29%  Similarity=0.404  Sum_probs=91.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+|++.+|.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++++++..       .+..   
T Consensus        59 ~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-------~gad---  128 (169)
T 4gpm_A           59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-------KGAD---  128 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            689999999999999999999999999999999999999999999999999999998666655544       4444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeee
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL  121 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~  121 (135)
                          ++..+..|+|||++|+..|+.+++++|+++|++++-
T Consensus       129 ----~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          129 ----VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             ----ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence                778899999999999999999999999999999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.9e-29  Score=147.71  Aligned_cols=118  Identities=28%  Similarity=0.351  Sum_probs=106.4

Q ss_pred             CCC-ccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           3 GAD-LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         3 g~~-~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      |.+ ++.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++.       ..+..   
T Consensus        25 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-------~~g~~---   94 (172)
T 3v30_A           25 GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL-------ERDVD---   94 (172)
T ss_dssp             CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-------TTTCC---
T ss_pred             CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHH-------HcCCC---
Confidence            444 7889999999999999999999999999999999999999999999999999866555544       44444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        95 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  143 (172)
T 3v30_A           95 ----INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV  143 (172)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence                6778899999999999999999999999999999999999999999986

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.1e-30  Score=153.51  Aligned_cols=118  Identities=23%  Similarity=0.274  Sum_probs=96.0

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      |++++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..    
T Consensus        58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~----  126 (192)
T 2rfm_A           58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE-------HGAN----  126 (192)
T ss_dssp             HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------TTCC----
T ss_pred             ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-------CCCC----
Confidence            56777778888888888888888888888888888888888888888888888887555554443       3333    


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                         ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus       127 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A          127 ---VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR  175 (192)
T ss_dssp             ---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             ---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence               6777888999999999999999999999999999999999999999886

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.8e-30  Score=150.63  Aligned_cols=118  Identities=25%  Similarity=0.262  Sum_probs=107.3

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.++..|.||||+|+. ++.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..   
T Consensus        27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~---   95 (162)
T 1ihb_A           27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-------FQAD---   95 (162)
T ss_dssp             SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------TTCC---
T ss_pred             CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            689999999999999999999 99999999999999999999999999999999998766666554       3333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC-eeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~-~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|+||||+|+..++.+++++|+++|++ ++.++..|.|||++|+
T Consensus        96 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~  145 (162)
T 1ihb_A           96 ----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR  145 (162)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             ----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence                677889999999999999999999999999998 5999999999999986

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.8e-29  Score=144.56  Aligned_cols=118  Identities=27%  Similarity=0.341  Sum_probs=105.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|.+++ .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++.       ..+..   
T Consensus        24 ~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-------~~g~~---   92 (153)
T 1awc_B           24 NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-------KHGAD---   92 (153)
T ss_dssp             HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-------TTTCC---
T ss_pred             cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-------HcCCC---
Confidence            366776 5788999999999999999999999999999999999999999999999865555444       44444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus        93 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  141 (153)
T 1awc_B           93 ----VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI  141 (153)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence                6788899999999999999999999999999999999999999999986

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=5.4e-29  Score=156.77  Aligned_cols=66  Identities=29%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE   67 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~   67 (135)
                      +|+++|..|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++++++..
T Consensus        62 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  127 (299)
T 1s70_B           62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS  127 (299)
T ss_dssp             HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            478999999999999999999999999999999999999999999999999999999888888765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.96  E-value=7.2e-29  Score=138.12  Aligned_cols=112  Identities=22%  Similarity=0.229  Sum_probs=98.8

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++.       ..+..       ++..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-------~~g~~-------~~~~   69 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-------LKGAD-------INAP   69 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHH-------TTTCC-------TTCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHH-------HcCCC-------CCcC
Confidence            567899999999999999999999999999999999999999999999865554444       44444       7788


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|..
T Consensus        70 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            8999999999999999999999999999999999999999999863

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=1.2e-29  Score=154.74  Aligned_cols=133  Identities=17%  Similarity=0.168  Sum_probs=106.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCc-----cccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI-----LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG   76 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~-----~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (135)
                      .|+++|.+|..|.||||+|+..|+.+++++|++.|+++     +.++..|.||||+|+..++.++++++...........
T Consensus        26 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  105 (232)
T 2rfa_A           26 EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARA  105 (232)
T ss_dssp             TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCccc
Confidence            38999999999999999999999999999999999887     6678899999999999998777776665432211100


Q ss_pred             cchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      . ........+..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|++
T Consensus       106 ~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  163 (232)
T 2rfa_A          106 T-GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL  163 (232)
T ss_dssp             C-SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             C-CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            0 000000122334579999999999999999999999999999999999999999874

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=3.7e-29  Score=152.14  Aligned_cols=118  Identities=29%  Similarity=0.314  Sum_probs=98.6

Q ss_pred             CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC-cchhhh
Q psy8766           4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG-EASQGI   82 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   82 (135)
                      .+++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++.       ..+ ..    
T Consensus        98 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-------~~g~~~----  166 (228)
T 2dzn_A           98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC-------GLGKSA----  166 (228)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-------TTTCCC----
T ss_pred             cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-------hcCccc----
Confidence            777888888888888888888888888888888888888888888888888888755444443       333 33    


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCcHHHHHHHH-HcCCCeeecCCCCCCcchhccC
Q psy8766          83 QNLLNEKDKTGCSPLHYASREGHIISLENLI-NLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll-~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                         ++..+..|+||||+|+..++.+++++|+ +.|++++.+|..|.||+++|++
T Consensus       167 ---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          167 ---VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             ---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             ---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence               6778889999999999999999999999 8899999999999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1e-28  Score=158.15  Aligned_cols=133  Identities=26%  Similarity=0.220  Sum_probs=96.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhc-------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG-------   74 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~-------   74 (135)
                      +|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++++.........       
T Consensus        80 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~  159 (351)
T 3utm_A           80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS  159 (351)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCc
Confidence            4777888888888888888888888888888888888888888888888888888877777766542110000       


Q ss_pred             --------------------------------------------------CC-------------cchhhhhh------h
Q psy8766          75 --------------------------------------------------EG-------------EASQGIQN------L   85 (135)
Q Consensus        75 --------------------------------------------------~~-------------~~~~~~~~------~   85 (135)
                                                                        .+             .....+..      .
T Consensus       160 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~  239 (351)
T 3utm_A          160 AVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN  239 (351)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred             chHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence                                                              00             00000000      1


Q ss_pred             hhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ++..+..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+
T Consensus       240 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~  288 (351)
T 3utm_A          240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA  288 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            3556778889999999999999999999999999999999999999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=9.3e-29  Score=151.24  Aligned_cols=133  Identities=20%  Similarity=0.157  Sum_probs=94.1

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHH------HhcC-
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV------FLGE-   75 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~------~~~~-   75 (135)
                      |+++|.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++......      .... 
T Consensus        35 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence            456777777777888888877777788777777777777777777777777777776666666543211      0000 


Q ss_pred             --Cc----------chhhhhh------hhhccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          76 --GE----------ASQGIQN------LLNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        76 --~~----------~~~~~~~------~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                        +.          ....+..      .++..+. .|+||||+|+..++.+++++|+++|++++.+|..|.|||++|++
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  193 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG  193 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHc
Confidence              00          0000000      1455565 88999999999999999999999999999999999999998864

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=4.4e-29  Score=152.11  Aligned_cols=126  Identities=28%  Similarity=0.322  Sum_probs=94.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHH------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA------------   69 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~------------   69 (135)
                      +|++++.+|..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++....            
T Consensus        62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  141 (231)
T 3aji_A           62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT  141 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence            46777777777888888888888888888888888877777777788888887777766666665421            


Q ss_pred             --------------HHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          70 --------------AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        70 --------------~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                                    ..++..+..       ++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus       142 ~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          142 AMHRAAAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK  213 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCC-------ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence                          111111111       4566778889999999999999999999999999988889999998875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.6e-29  Score=150.47  Aligned_cols=115  Identities=30%  Similarity=0.282  Sum_probs=105.4

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhh
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNL   85 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (135)
                      +|.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++...       +..       
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~-------   93 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-------GSN-------   93 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-------TCC-------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-------CCC-------
Confidence            578899999999999999999999999999999999999999999999999987777666653       222       


Q ss_pred             hhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus        94 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  142 (192)
T 2rfm_A           94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS  142 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            6778889999999999999999999999999999999999999999986

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.9e-29  Score=145.54  Aligned_cols=116  Identities=22%  Similarity=0.266  Sum_probs=105.2

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      +.+++..+..|.||||+ +..|+.+++++|++.|++++.+|..|.||||+|+..++.++++++..       .+..    
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~----   93 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-------HGAD----   93 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC----
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-------cCCC----
Confidence            56899999999999999 99999999999999999999999999999999999998666655554       3333    


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                         ++..+..|+||||+|+..++.+++++|++. ++++.+|..|.|||++|+
T Consensus        94 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~  141 (156)
T 1bd8_A           94 ---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELAL  141 (156)
T ss_dssp             ---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHH
T ss_pred             ---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHH
Confidence               677888999999999999999999999999 999999999999999986

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=7.7e-29  Score=153.11  Aligned_cols=57  Identities=21%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHH
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE   66 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~   66 (135)
                      |..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  110 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI  110 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            455555555555555555555555555555555555555555555555544444443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=6e-29  Score=148.69  Aligned_cols=132  Identities=18%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcC----C--
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE----G--   76 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~----~--   76 (135)
                      +.++|.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..........    +  
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  108 (201)
T 3hra_A           29 TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN  108 (201)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCc
Confidence            4589999999999999999999999999999999999999999999999999999888877776421100000    0  


Q ss_pred             --------cchhhhh-------hhhhccCCCCCcHHHHHHhcCc-----HHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          77 --------EASQGIQ-------NLLNEKDKTGCSPLHYASREGH-----IISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        77 --------~~~~~~~-------~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                              .....+.       ..++..+..|+||||+|+..+.     .+++++|+++|++++.+|..|.|||++|+
T Consensus       109 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  186 (201)
T 3hra_A          109 ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN  186 (201)
T ss_dssp             SHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Confidence                    0000000       0144566677888888887776     78888888888888888888888888775

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=2.3e-29  Score=142.41  Aligned_cols=111  Identities=28%  Similarity=0.316  Sum_probs=99.8

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      ...|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.++++++..       .+..       ++..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~-------~~~~   76 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-------NGAD-------VNAV   76 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------TTCC-------TTCC
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC-------CCcC
Confidence            4567899999999999999999999999999999999999999999998666655554       3333       6778


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        77 d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~  121 (136)
T 2jab_A           77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI  121 (136)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH
Confidence            889999999999999999999999999999999999999999986

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=3.5e-28  Score=147.45  Aligned_cols=126  Identities=27%  Similarity=0.313  Sum_probs=88.0

Q ss_pred             CCCCcccc-ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHH----------
Q psy8766           2 TGADLNVL-DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA----------   70 (135)
Q Consensus         2 ~g~~~n~~-~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~----------   70 (135)
                      +|++++.. |..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++.....          
T Consensus        13 ~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g   92 (223)
T 2f8y_A           13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG   92 (223)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTC
T ss_pred             cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            46777655 6788888888888888888888888888888888888888888888887777766654221          


Q ss_pred             -----------------HHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          71 -----------------VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        71 -----------------~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                                       .++..+..       ++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|
T Consensus        93 ~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  165 (223)
T 2f8y_A           93 TTPLILAARLAVEGMLEDLINSHAD-------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA  165 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcHHHHHHHhCcHHHHHHHHHcCCC-------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHH
Confidence                             11111111       344555667777777777777777777777777777777777777766


Q ss_pred             c
Q psy8766         134 A  134 (135)
Q Consensus       134 ~  134 (135)
                      +
T Consensus       166 ~  166 (223)
T 2f8y_A          166 A  166 (223)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=9.2e-29  Score=150.70  Aligned_cols=131  Identities=21%  Similarity=0.204  Sum_probs=101.3

Q ss_pred             CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc------
Q psy8766           4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE------   77 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~------   77 (135)
                      ..++.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++............      
T Consensus        31 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  110 (231)
T 3aji_A           31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL  110 (231)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            34678899999999999999999999999999999999999999999999999998888877653221110000      


Q ss_pred             -------chhhhhh------hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          78 -------ASQGIQN------LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        78 -------~~~~~~~------~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                             ....+..      .++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus       111 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  180 (231)
T 3aji_A          111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC  180 (231)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHH
Confidence                   0000000      13456667888888888888888888888888888888888888888875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=5.8e-29  Score=155.31  Aligned_cols=118  Identities=20%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccC-CchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +++++.++..|.||||+|+..|+.+++++|++.|++++.++.. |.||||+|+..++.+++++++.       .+..   
T Consensus       148 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-------~gad---  217 (282)
T 1oy3_D          148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-------AGAD---  217 (282)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             hhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            5678999999999999999999999999999999999999854 9999999999998666555554       3444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++.++..|+||||+|+..++.+++++|+++|++++.++..|.||+++|.
T Consensus       218 ----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          218 ----PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             ----TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred             ----CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence                7888999999999999999999999999999999999999999999885

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=5.5e-29  Score=153.78  Aligned_cols=126  Identities=23%  Similarity=0.250  Sum_probs=88.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCC-CccccccCCchHHHHHHHhCCCchHHHHHHHH-----------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHIKEFAEEVA-----------   69 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~-----------   69 (135)
                      +|++++.++..|.||||+|+..++.+++++|++.+. +++.++..|.||||+|+..++.++++++....           
T Consensus        79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  158 (253)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence            467777777777888888888888888888777765 77777777777777777777777766665521           


Q ss_pred             ---------------HHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          70 ---------------AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        70 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                                     ..+++.+..       ++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  231 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGAN-------KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ  231 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHH
Confidence                           111122222       4556667777777777777777777777777777777777777777765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=1.1e-28  Score=154.04  Aligned_cols=130  Identities=25%  Similarity=0.248  Sum_probs=97.8

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHH--------------
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV--------------   71 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~--------------   71 (135)
                      +|.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++++......              
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  117 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence            788899999999999999999999999999999999999999999999999988877776531100              


Q ss_pred             -------------------------H-------hc----CCc----------chhhhhhh------hhccCC-CCCcHHH
Q psy8766          72 -------------------------F-------LG----EGE----------ASQGIQNL------LNEKDK-TGCSPLH   98 (135)
Q Consensus        72 -------------------------~-------~~----~~~----------~~~~~~~~------~~~~~~-~~~t~l~   98 (135)
                                               .       +.    .+.          ....+..+      ++..+. .|+||||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (282)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence                                     0       00    000          00001111      233443 4888888


Q ss_pred             HHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          99 YASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        99 ~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +|+..++.+++++|+++|++++.+|..|.|||++|++
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHH
Confidence            8888888888888888888888888888888888863

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=1.6e-27  Score=145.67  Aligned_cols=118  Identities=26%  Similarity=0.356  Sum_probs=77.2

Q ss_pred             CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      .+++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++       .++..+..     
T Consensus       102 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~-------~Ll~~g~~-----  169 (237)
T 3b7b_A          102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE-------ILLAAKCD-----  169 (237)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH-------HHHTTTCC-----
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH-------HHHHcCCC-----
Confidence            344444445555555555555555555555555555555555555555555554433222       22233333     


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                        ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|++
T Consensus       170 --~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          170 --LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             --TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred             --CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence              56678889999999999999999999999999999999999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=5.1e-29  Score=152.42  Aligned_cols=127  Identities=24%  Similarity=0.288  Sum_probs=94.6

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHcCC----CccccccCCchHHHHHHHhCCCchHHHHHHH--------------
Q psy8766           7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKA----NILLKDINRRNILHLLVLNGGGHIKEFAEEV--------------   68 (135)
Q Consensus         7 n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~--------------   68 (135)
                      +.+|.+|.||||+|+..|+.+++++|++.+.    +++.++..|.||||+|+..++.+++++++..              
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            4578899999999999999999999998754    7899999999999999999987776665431              


Q ss_pred             ------------HHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCC-CCCCcchhcc
Q psy8766          69 ------------AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNN-SNESPLHLAA  134 (135)
Q Consensus        69 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a~  134 (135)
                                  ...++..+... .....++..+..|.||||+|+..++.+++++|+++|++++.++. .|.||||+|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTP-HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTT-SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccch-hHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence                        11122111100 00011355677899999999999999999999999999999987 8999999986

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=2.2e-28  Score=146.27  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=71.3

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHH-HcCCCccccccCCchHHHHHHHhCCCchHHHHHHHH-----------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLV-RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA-----------   69 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~-----------   69 (135)
                      +|++++.++..|.||||+|+..++.+++++|+ ..+.+++..+..|.||||+|+..++.++++++....           
T Consensus        61 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  140 (201)
T 3hra_A           61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG  140 (201)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTS
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC
Confidence            35666666666666666666666666666666 345566666666666666666666655555554432           


Q ss_pred             ---------------------HHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8766          70 ---------------------AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG  116 (135)
Q Consensus        70 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g  116 (135)
                                           ..+++.+..       ++..+..|+|||++|+..++.+++++|+++|
T Consensus       141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          141 YTALIEAVGLREGNQLYQDIVKLLMENGAD-------QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCHHHHHHHhccchhhHHHHHHHHHHCCCC-------CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                                 222222222       5678889999999999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=1.1e-27  Score=146.64  Aligned_cols=67  Identities=19%  Similarity=0.163  Sum_probs=56.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~   68 (135)
                      .|.++|.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++...
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  101 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS  101 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4778888888888888888888888888888888888888888888888888888887777776654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.9e-29  Score=148.18  Aligned_cols=123  Identities=16%  Similarity=0.147  Sum_probs=104.8

Q ss_pred             Cccccc-cCCChHHHHHHHhCCH----HHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcch
Q psy8766           5 DLNVLD-KEKRSPLLLAASRGGW----KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS   79 (135)
Q Consensus         5 ~~n~~~-~~g~tpl~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
                      +++..+ ..|.||||+|+..++.    +++++|++.|++++.+|..|+||||+|+..++..+.. ..++...++..+.. 
T Consensus        29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~-~~~iv~~Ll~~Gad-  106 (186)
T 3t8k_A           29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG-TTELCKIFLEKGAD-  106 (186)
T ss_dssp             SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH-HHHHHHHHHHTTCC-
T ss_pred             CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh-HHHHHHHHHHCCCC-
Confidence            456666 7899999999999975    5899999999999999999999999999998655422 23456667777777 


Q ss_pred             hhhhhhhhccCCCCC-cHHHHHHhcC-----cHHHHHHHHH-cCCCeeecCCCCCCcchhccC
Q psy8766          80 QGIQNLLNEKDKTGC-SPLHYASREG-----HIISLENLIN-LGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        80 ~~~~~~~~~~~~~~~-t~l~~a~~~~-----~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~  135 (135)
                            ++.++..|+ ||||+|+..+     ..+++++|++ +|++++.+|..|.|||++|++
T Consensus       107 ------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A          107 ------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             ------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             ------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence                  888999999 9999999844     4679999999 999999999999999999874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=3.8e-28  Score=148.69  Aligned_cols=117  Identities=28%  Similarity=0.305  Sum_probs=79.2

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      +++..+..|.||||+|+..++.+++++|++.|++++..+ ..|.||||+|+..++.++++++.+       .+..     
T Consensus       108 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~-----  175 (241)
T 1k1a_A          108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-------HGAN-----  175 (241)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC-----
T ss_pred             cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH-------cCCC-----
Confidence            455555555555555555555555555555555555555 455555555555554333333332       2222     


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                        ++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|++
T Consensus       176 --~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          176 --VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             --TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             --CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHh
Confidence              56678889999999999999999999999999999999999999999864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=3.7e-28  Score=147.45  Aligned_cols=115  Identities=23%  Similarity=0.257  Sum_probs=102.4

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcC-Ccchhhhhhh
Q psy8766           7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE-GEASQGIQNL   85 (135)
Q Consensus         7 n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   85 (135)
                      +..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++       ++.. +..       
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------Ll~~~g~~-------  132 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM-------LFTQPNIE-------  132 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH-------HTTSTTCC-------
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHH-------HHcCCCCC-------
Confidence            3456678999999999999999999999999999999999999999999998554444       4444 444       


Q ss_pred             hhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|++
T Consensus       133 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  182 (222)
T 3ehr_A          133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN  182 (222)
T ss_dssp             CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence            77889999999999999999999999999999999999999999999974

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=6.8e-28  Score=151.24  Aligned_cols=132  Identities=21%  Similarity=0.248  Sum_probs=88.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH-------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV-------------   68 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~-------------   68 (135)
                      +|+++|.+|.+|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++...             
T Consensus        81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~  160 (285)
T 3d9h_A           81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASP  160 (285)
T ss_dssp             TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCH
Confidence            4778888888888888888888888888888888888888888888888888888877777766542             


Q ss_pred             ------------HHHHhcCCcchh--------------------hhhhh------hhccCCCCCcHHHHHHhcCcHHHHH
Q psy8766          69 ------------AAVFLGEGEASQ--------------------GIQNL------LNEKDKTGCSPLHYASREGHIISLE  110 (135)
Q Consensus        69 ------------~~~~~~~~~~~~--------------------~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~  110 (135)
                                  ...++..+....                    .+..+      ++ .+..|+||||+|+..++.++++
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHH
Confidence                        111222111100                    00000      11 2455667777777777777777


Q ss_pred             HHHHcCCCeeecCCCCCCcchhcc
Q psy8766         111 NLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus       111 ~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +|+++|++++.+|..|.|||++|+
T Consensus       240 ~Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          240 LLMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHhc
Confidence            777777777777777777777665

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=2.3e-28  Score=136.26  Aligned_cols=109  Identities=40%  Similarity=0.586  Sum_probs=98.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCC
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK   91 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (135)
                      +|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.++++++..       .+..       ++..+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-------~g~~-------~~~~~~   66 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-------AGAD-------VNAKDK   66 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------TTCC-------TTCCCT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-------cCCC-------CcccCC
Confidence            58999999999999999999999999999999999999999999998766665554       3333       677888


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  109 (126)
T 1n0r_A           67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA  109 (126)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999986

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=5.3e-29  Score=147.27  Aligned_cols=110  Identities=25%  Similarity=0.322  Sum_probs=99.0

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      +..|.||||+|+..|+.++++.|++ |++++.+|..|.||||+|+..++.++++++..       .+..       ++..
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-------~ga~-------~~~~  105 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-------AGAD-------LDHR  105 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------TTCC-------TTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC-------CCcC
Confidence            5688999999999999999999999 99999999999999999999998666655554       3433       6666


Q ss_pred             C-CCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          90 D-KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~-~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      + ..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus       106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A          106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  151 (183)
T ss_dssp             CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence            6 88999999999999999999999999999999999999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=6.1e-29  Score=153.69  Aligned_cols=119  Identities=14%  Similarity=0.111  Sum_probs=102.6

Q ss_pred             CCCCccc----cccCCChHHHHHHHh---CCHHHHHHHHHcCCCcccc-----------ccCCchHHHHHHHhCCCchHH
Q psy8766           2 TGADLNV----LDKEKRSPLLLAASR---GGWKTVLTLVRNKANILLK-----------DINRRNILHLLVLNGGGHIKE   63 (135)
Q Consensus         2 ~g~~~n~----~~~~g~tpl~~a~~~---~~~~~~~~Ll~~g~~~~~~-----------~~~g~t~l~~a~~~~~~~~~~   63 (135)
                      +|+++|.    +|..|.||||+|+..   |+.+++++|++.|++++..           |..|.||||+|+..|+.++++
T Consensus        28 ~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  107 (256)
T 2etb_A           28 NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK  107 (256)
T ss_dssp             HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred             cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHH
Confidence            4789998    899999999999999   9999999999998877633           478999999999999877666


Q ss_pred             HHHHHHHHHhcCCcchhhhhhhhhccCCC-------------CCcHHHHHHhcCcHHHHHHHHH---cCCCeeecCCCCC
Q psy8766          64 FAEEVAAVFLGEGEASQGIQNLLNEKDKT-------------GCSPLHYASREGHIISLENLIN---LGACINLKNNSNE  127 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~  127 (135)
                      ++...       +..       ++..+..             |.||||+|+..|+.+++++|++   .|++++.+|..|+
T Consensus       108 ~Ll~~-------ga~-------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~  173 (256)
T 2etb_A          108 LLVEN-------GAD-------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN  173 (256)
T ss_dssp             HHHHT-------TCC-------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred             HHHHc-------CCC-------CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCC
Confidence            66553       333       4444443             9999999999999999999999   9999999999999


Q ss_pred             Ccchhcc
Q psy8766         128 SPLHLAA  134 (135)
Q Consensus       128 tpl~~a~  134 (135)
                      ||||+|+
T Consensus       174 TpLh~A~  180 (256)
T 2etb_A          174 TVLHALV  180 (256)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3.1e-28  Score=149.38  Aligned_cols=117  Identities=21%  Similarity=0.241  Sum_probs=98.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++++..       +..   
T Consensus        27 ~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------ga~---   95 (239)
T 1ycs_B           27 HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-------GVN---   95 (239)
T ss_dssp             -----------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-------TCC---
T ss_pred             cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-------CCC---
Confidence            57888865 6889999999999999999999999999999999999999999999997777766653       333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCC-Ccchhc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNE-SPLHLA  133 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-tpl~~a  133 (135)
                          ++..+..|+||||+|+..++.+++++|+++|++++.++..|. ||+++|
T Consensus        96 ----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           96 ----VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             ----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             ----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence                788899999999999999999999999999999999998887 999998

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=1.4e-27  Score=145.92  Aligned_cols=133  Identities=24%  Similarity=0.319  Sum_probs=76.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhc-C---C-
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG-E---G-   76 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~-~---~-   76 (135)
                      +|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++......... .   + 
T Consensus        33 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  112 (237)
T 3b7b_A           33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW  112 (237)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSC
T ss_pred             cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCC
Confidence            4566666666666666666666666666666666666666666666666666666665555544432100000 0   0 


Q ss_pred             ---------cchhhhhh------hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          77 ---------EASQGIQN------LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        77 ---------~~~~~~~~------~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                               .....+..      .++..+..|.||||+|+..++.+++++|++.|++++.+|..|.|||++|+
T Consensus       113 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  185 (237)
T 3b7b_A          113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA  185 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence                     00000000      02345556667777777777777777777777777777767777777664

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=4.6e-28  Score=159.52  Aligned_cols=119  Identities=26%  Similarity=0.303  Sum_probs=82.4

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++++.+       .+..   
T Consensus       267 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-------~gad---  336 (437)
T 1n11_A          267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-------HQAD---  336 (437)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-------TTCC---
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh-------cCCC---
Confidence            355555555555666666666666666666666666665556666666666666665554444433       2222   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|.
T Consensus       337 ----~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~  385 (437)
T 1n11_A          337 ----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK  385 (437)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred             ----CCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence                5677888999999999999999999999999999999999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=6.6e-29  Score=143.47  Aligned_cols=110  Identities=26%  Similarity=0.339  Sum_probs=53.4

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+ .++.+++++       ++..+..       ++..
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~-------Ll~~g~~-------~~~~   73 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAEL-------LLLHGAE-------PNCA   73 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHH-------HHTTTCC-------CCCC
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHH-------HHHcCCC-------CCCc
Confidence            444555555555555555555555555555555555555555542 343222222       2222222       3444


Q ss_pred             CCCCCc-HHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          90 DKTGCS-PLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~~~~~t-~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +..|+| |||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        74 d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  119 (156)
T 1bi7_B           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE  119 (156)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH
T ss_pred             CCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            445554 555555555555555555555555555555555555543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=2.2e-28  Score=160.99  Aligned_cols=119  Identities=25%  Similarity=0.330  Sum_probs=88.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .|+++|..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++++++....       ..   
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-------~~---   72 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-------AK---   72 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT-------CC---
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-------CC---
Confidence            58899999999999999999999999999999999999999999999999999999877777766532       22   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus        73 ----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~  121 (437)
T 1n11_A           73 ----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA  121 (437)
T ss_dssp             ----SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             ----CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence                5666777888888888888888888888888888888888888888775

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=6e-28  Score=146.41  Aligned_cols=116  Identities=20%  Similarity=0.222  Sum_probs=75.3

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQN   84 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
                      +++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++.       +.+..      
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-------~~g~~------  150 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-------KNGAN------  150 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-------HTTCC------
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHH-------HcCCC------
Confidence            34444444444444444444444444444444444444444444444444444433322222       22222      


Q ss_pred             hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          85 LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        85 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                       ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+
T Consensus       151 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  199 (223)
T 2f8y_A          151 -KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ  199 (223)
T ss_dssp             -TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             -CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHH
Confidence             5677889999999999999999999999999999999999999999986

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=146.19  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=100.6

Q ss_pred             CCCCccccc---cCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcc
Q psy8766           2 TGADLNVLD---KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEA   78 (135)
Q Consensus         2 ~g~~~n~~~---~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (135)
                      +|++++..+   ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++++.       .+..
T Consensus         7 ~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-------~ga~   79 (229)
T 2vge_A            7 KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-------AGAN   79 (229)
T ss_dssp             ---CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC
T ss_pred             cCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------CCCC
Confidence            566766544   456688999999999999999999999999999999999999999998666665554       3443


Q ss_pred             hhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecC-CCCCCcchhc
Q psy8766          79 SQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN-NSNESPLHLA  133 (135)
Q Consensus        79 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a  133 (135)
                             ++..+..|+||||+|+..|+.+++++|++.|++++.++ ..|+|||++|
T Consensus        80 -------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           80 -------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             -------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence                   77888899999999999999999999999999999986 6999999998

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1.1e-28  Score=152.85  Aligned_cols=121  Identities=22%  Similarity=0.190  Sum_probs=102.7

Q ss_pred             CCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccc--------------cCCchHHHHHHHhCCCchHHHHHHHH
Q psy8766           4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD--------------INRRNILHLLVLNGGGHIKEFAEEVA   69 (135)
Q Consensus         4 ~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~~~~~~   69 (135)
                      .+++..|..|.||||+|+..|+.+++++|++.|++++.++              ..|.||||+|+..|+.+++++++...
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            3455666799999999999999999999999999999998              58999999999999866555554310


Q ss_pred             HHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCc---------HHHHHHHHHcCCCe-------eecCCCCCCcchhc
Q psy8766          70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---------IISLENLINLGACI-------NLKNNSNESPLHLA  133 (135)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~ll~~g~~~-------~~~~~~g~tpl~~a  133 (135)
                          ..+..       ++..+..|+||||+|+..++         .+++++|+++|+++       +.+|..|.|||++|
T Consensus       164 ----~~ga~-------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  232 (260)
T 3jxi_A          164 ----HKQAD-------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA  232 (260)
T ss_dssp             ----SCCCC-------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             ----ccCCC-------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHH
Confidence                03444       78889999999999998887         79999999999999       78999999999998


Q ss_pred             cC
Q psy8766         134 AR  135 (135)
Q Consensus       134 ~~  135 (135)
                      ++
T Consensus       233 ~~  234 (260)
T 3jxi_A          233 AK  234 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=3.6e-28  Score=140.39  Aligned_cols=117  Identities=19%  Similarity=0.139  Sum_probs=90.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCch-HHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN-ILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|+++|.++..|.||||+|+ .++.+++++|++.|++++.++..|.| |||+|+..++       ......++..+..  
T Consensus        34 ~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~-------~~~v~~Ll~~ga~--  103 (156)
T 1bi7_B           34 AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-------LDTLVVLHRAGAR--  103 (156)
T ss_dssp             TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC-------HHHHHHHHHHTCC--
T ss_pred             cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCC-------HHHHHHHHHcCCC--
Confidence            68999999999999999985 89999999999999999999999999 9999999997       3455566666655  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA  133 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a  133 (135)
                           ++..+..|+||||+|+..++.+++++|+++|++++.++..|.||.+.+
T Consensus       104 -----~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          104 -----LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             -----SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             -----CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence                 778889999999999999999999999999999999999999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=3.9e-28  Score=150.05  Aligned_cols=116  Identities=22%  Similarity=0.263  Sum_probs=100.0

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccC-------------CchHHHHHHHhCCCchHHHHHHHHHHHhcC
Q psy8766           9 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-------------RRNILHLLVLNGGGHIKEFAEEVAAVFLGE   75 (135)
Q Consensus         9 ~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~   75 (135)
                      +|..|.||||+|+..|+.+++++|++.|++++.++..             |.||||+|+..++.+++++++...    ..
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~----~~  161 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP----HQ  161 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS----SC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc----cc
Confidence            4467999999999999999999999999999999876             999999999999866555554310    04


Q ss_pred             CcchhhhhhhhhccCCCCCcHHHHHHh--cCcHH-------HHHHHHHcCCCe-------eecCCCCCCcchhccC
Q psy8766          76 GEASQGIQNLLNEKDKTGCSPLHYASR--EGHII-------SLENLINLGACI-------NLKNNSNESPLHLAAR  135 (135)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~ll~~g~~~-------~~~~~~g~tpl~~a~~  135 (135)
                      +..       ++..+..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+|||++|++
T Consensus       162 ga~-------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          162 PAS-------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             CCC-------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CCC-------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence            444       78889999999999998  78888       999999999999       8999999999999863

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=4.1e-28  Score=151.64  Aligned_cols=122  Identities=18%  Similarity=0.194  Sum_probs=80.7

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCC-CccccccCCchHHHHHHHh-----CCCchHHHHHH------------
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLN-----GGGHIKEFAEE------------   67 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~a~~~-----~~~~~~~~~~~------------   67 (135)
                      +|.+|.+|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..     ++.+++.++..            
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            78889999999999999999999999999987 7777777766666666622     22222222211            


Q ss_pred             --------------HHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCeeecCCCCCCcchh
Q psy8766          68 --------------VAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLIN-LGACINLKNNSNESPLHL  132 (135)
Q Consensus        68 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~  132 (135)
                                    ....++..+..       ++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad-------~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~  256 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEAD-------VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV  256 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHH
Confidence                          11222222222       45566667777777777777777777776 677777777777777776


Q ss_pred             cc
Q psy8766         133 AA  134 (135)
Q Consensus       133 a~  134 (135)
                      |+
T Consensus       257 A~  258 (276)
T 4hbd_A          257 AL  258 (276)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=3.6e-28  Score=156.81  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=104.8

Q ss_pred             ccccccCCChHHHHHHHhC--CHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766           6 LNVLDKEKRSPLLLAASRG--GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      ++.++..|.||||+|+..|  +.+++++|++.|++++.+|..|.||||+|+..|+.+++++++......  ...      
T Consensus       131 ~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~------  202 (364)
T 3ljn_A          131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK--SSL------  202 (364)
T ss_dssp             TEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS--SSC------
T ss_pred             cccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccc--ccc------
Confidence            3448899999999999999  999999999999999999999999999999999977777766543210  011      


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                       .++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       203 -~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          203 -RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             -CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             -cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence             15677889999999999999999999999999999999999999999986

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=1.8e-27  Score=144.65  Aligned_cols=112  Identities=27%  Similarity=0.324  Sum_probs=66.6

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHcC--CCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhh
Q psy8766           9 LDKEKRSPLLLAASRGGWKTVLTLVRNK--ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL   86 (135)
Q Consensus         9 ~~~~g~tpl~~a~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (135)
                      .+..|.||||+|+..|+.+++++|++.|  ++++..+..|.||||+|+..++.++++++.+       .+..       +
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-------~g~~-------~  133 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-------NGAS-------V  133 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC-------S
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH-------cCCC-------c
Confidence            3444444444444444444444444444  4444444444444444444444333322222       2222       4


Q ss_pred             hccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCeeecCCCCCCcchhcc
Q psy8766          87 NEKDKTGCSPLHYASREGHIISLENLINLG-ACINLKNNSNESPLHLAA  134 (135)
Q Consensus        87 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~tpl~~a~  134 (135)
                      +..+..|+||||+|+..++.+++++|++.| ++++.+|..|+|||++|+
T Consensus       134 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~  182 (228)
T 2dzn_A          134 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL  182 (228)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHH
Confidence            566777888888888888888888888887 888888888888888775

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=8.1e-28  Score=150.92  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=100.4

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQN   84 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
                      ++|.+|..|.||||+|+..|+.+++++|++.|++++.++  |.||||+|+..|+.++++++...       +..      
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~-------ga~------   87 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS-------GLD------   87 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHT-------TCC------
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHC-------CCC------
Confidence            688999999999999999999999999999999998874  89999999999988777766653       333      


Q ss_pred             hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCC-CCcchhcc
Q psy8766          85 LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN-ESPLHLAA  134 (135)
Q Consensus        85 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g-~tpl~~a~  134 (135)
                       ++..+..|+||||+|+..|+.+++++|+++|++++.++..| .|||++|+
T Consensus        88 -~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~  137 (285)
T 3kea_A           88 -DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV  137 (285)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH
T ss_pred             -CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Confidence             67788889999999999999999999999999999999998 79999886

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=4.7e-27  Score=147.42  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|++++.+|..|.||||+|+..++.+++++|++.|++++. +..|.||||+|+..++.++++++.       +.+..   
T Consensus       179 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll-------~~gad---  247 (285)
T 3d9h_A          179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLM-------DFGAD---  247 (285)
T ss_dssp             TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHH-------HTTCC---
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH-------HCCCC---
Confidence            3566666666666666666666666666666666666663 566666666666666544443333       23333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc-CCCeee
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINL-GACINL  121 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-g~~~~~  121 (135)
                          ++.++..|+|||++|+  ++.+++++|+++ |+++..
T Consensus       248 ----~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          248 ----TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             ----TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             ----CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence                6778999999999999  456899999987 777654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=3.8e-27  Score=152.71  Aligned_cols=123  Identities=23%  Similarity=0.336  Sum_probs=108.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++.......         
T Consensus       155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------  225 (373)
T 2fo1_E          155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK---------  225 (373)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH---------
T ss_pred             cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc---------
Confidence            58999999999999999999999999999999999999999999999999999999877777666543210         


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcC---cHHHHHHHHHcCCCeee--------cCCCCCCcchhccC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREG---HIISLENLINLGACINL--------KNNSNESPLHLAAR  135 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~ll~~g~~~~~--------~~~~g~tpl~~a~~  135 (135)
                        ..++..+..|.||||+|+..+   +.+++++|++.|++++.        .|..|.||||+|++
T Consensus       226 --~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~  288 (373)
T 2fo1_E          226 --GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ  288 (373)
T ss_dssp             --HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS
T ss_pred             --cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHH
Confidence              116778899999999999988   89999999999999986        57789999999874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=4.5e-28  Score=149.12  Aligned_cols=110  Identities=25%  Similarity=0.322  Sum_probs=98.6

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      +..|.||||+|+..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++++.       .+..       ++..
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-------~ga~-------~~~~  106 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-------AGAD-------LDHR  106 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-------TTCC-------TTCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-------cCCC-------CCcC
Confidence            3578999999999999999999999 99999999999999999999998666655554       3443       6666


Q ss_pred             C-CCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          90 D-KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~-~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      + ..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       107 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             CSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            6 78999999999999999999999999999999999999999986

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=2.5e-27  Score=144.45  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=101.3

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHcCCCcccccc-------------CCchHHHHHHHhCCCchHHHHHHHHHHHh
Q psy8766           7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI-------------NRRNILHLLVLNGGGHIKEFAEEVAAVFL   73 (135)
Q Consensus         7 n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~~~~~~~~~~   73 (135)
                      +.+|..|.||||+|+..|+.+++++|++.|++++.++.             .|.||||+|+..++.++++++.+      
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------  142 (232)
T 2rfa_A           69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE------  142 (232)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH------
T ss_pred             cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH------
Confidence            67788999999999999999999999999999988765             79999999999998666665554      


Q ss_pred             cCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHH----HHHHHcCCCe------eecCCCCCCcchhccC
Q psy8766          74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISL----ENLINLGACI------NLKNNSNESPLHLAAR  135 (135)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~----~~ll~~g~~~------~~~~~~g~tpl~~a~~  135 (135)
                       .+..       ++..+..|+||||+|+..++.+++    ++|+++|+++      +.+|..|.|||++|++
T Consensus       143 -~ga~-------~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~  206 (232)
T 2rfa_A          143 -HGAD-------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV  206 (232)
T ss_dssp             -TTCC-------TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH
T ss_pred             -CCCC-------CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHH
Confidence             3444       788899999999999999999988    9999999988      5889999999999863

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=6.1e-27  Score=149.91  Aligned_cols=119  Identities=25%  Similarity=0.263  Sum_probs=108.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .+.++|.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++++++...       +..   
T Consensus        47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-------g~~---  116 (351)
T 3utm_A           47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-------GAC---  116 (351)
T ss_dssp             TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-------TCC---
T ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-------CCC---
Confidence            4789999999999999999999999999999999999999999999999999999987766666543       333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|.||||+|+..++.+++++|+++|++++..+..|.+|+++|+
T Consensus       117 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~  165 (351)
T 3utm_A          117 ----VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP  165 (351)
T ss_dssp             ----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHh
Confidence                6778889999999999999999999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=2.3e-27  Score=138.23  Aligned_cols=109  Identities=19%  Similarity=0.142  Sum_probs=98.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCC
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK   91 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (135)
                      .|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..++.++++++..       .+..       ++..+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~-------~~~~~~   67 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-------NGAD-------PQLLGK   67 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC-------TTCCCT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-------cCCC-------CCCcCC
Confidence            58899999999999999999999999999999999999999999998666655554       3333       677888


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  110 (167)
T 3v31_A           68 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV  110 (167)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999986

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=8.2e-28  Score=150.31  Aligned_cols=102  Identities=19%  Similarity=0.156  Sum_probs=88.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .|.+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++++.      ..+..   
T Consensus       172 ~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~------~~gad---  242 (276)
T 4hbd_A          172 LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA------VPSCD---  242 (276)
T ss_dssp             HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT------STTCC---
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh------cCCCC---
Confidence            366778888899999999999999999999999999999999999999999999998655555442      13444   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLG  116 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g  116 (135)
                          ++..+..|+|||++|+..|+.+++++|++++
T Consensus       243 ----~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          243 ----ISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             ----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             ----CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                7788999999999999999999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=1.1e-27  Score=149.25  Aligned_cols=115  Identities=22%  Similarity=0.213  Sum_probs=99.4

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHcCCCcccccc--------------CCchHHHHHHHhCCCchHHHHHHHHHHHhc
Q psy8766           9 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI--------------NRRNILHLLVLNGGGHIKEFAEEVAAVFLG   74 (135)
Q Consensus         9 ~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~   74 (135)
                      +|..|.||||+|+..|+.+++++|++.|++++.++.              .|.||||+|+..++.+++++++...    .
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~----~  172 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS----W  172 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS----S
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc----c
Confidence            567899999999999999999999999999999987              7999999999999866555554310    0


Q ss_pred             CCcchhhhhhhhhccCCCCCcHHHHHHhcCc---------HHHHHHHHHcCCCee-------ecCCCCCCcchhcc
Q psy8766          75 EGEASQGIQNLLNEKDKTGCSPLHYASREGH---------IISLENLINLGACIN-------LKNNSNESPLHLAA  134 (135)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~ll~~g~~~~-------~~~~~g~tpl~~a~  134 (135)
                      .+..       ++..+..|+||||+|+..++         .+++++|+++|++++       .+|..|.|||++|+
T Consensus       173 ~gad-------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~  241 (273)
T 2pnn_A          173 QPAD-------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA  241 (273)
T ss_dssp             CCCC-------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CCCC-------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence            3444       78889999999999999888         799999999999996       58999999999986

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=6.1e-27  Score=151.09  Aligned_cols=132  Identities=23%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHh--------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL--------   73 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~--------   73 (135)
                      +|+++|.+|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..++.++++++.......-        
T Consensus        42 ~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  119 (364)
T 3ljn_A           42 TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLN  119 (364)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred             cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHh
Confidence            4677777777777777777777777777777777775543  356677777777776666666665421110        


Q ss_pred             ---------------------------cCCc-chhhhhhh------hhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC-
Q psy8766          74 ---------------------------GEGE-ASQGIQNL------LNEKDKTGCSPLHYASREGHIISLENLINLGAC-  118 (135)
Q Consensus        74 ---------------------------~~~~-~~~~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~-  118 (135)
                                                 ..+. ....+..+      ++..+..|+||||+|+..|+.+++++|+++|++ 
T Consensus       120 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  199 (364)
T 3ljn_A          120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK  199 (364)
T ss_dssp             CCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS
T ss_pred             hcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Confidence                                       0000 01111111      345666777888888888888888888877777 


Q ss_pred             ----eeecCCCCCCcchhccC
Q psy8766         119 ----INLKNNSNESPLHLAAR  135 (135)
Q Consensus       119 ----~~~~~~~g~tpl~~a~~  135 (135)
                          ++.+|..|.||||+|++
T Consensus       200 ~~~~~~~~~~~g~t~L~~A~~  220 (364)
T 3ljn_A          200 SSLRLDYANKQGNSHLHWAIL  220 (364)
T ss_dssp             SSCCTTCCCTTCCCTTHHHHT
T ss_pred             ccccccccCCCCCcHHHHHHH
Confidence                77777778888887763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.94  E-value=1.1e-26  Score=127.86  Aligned_cols=111  Identities=27%  Similarity=0.355  Sum_probs=95.7

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhh
Q psy8766           7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL   86 (135)
Q Consensus         7 n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (135)
                      ..+|.+|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.++++       .++..+..       +
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~-------~Ll~~g~~-------~   68 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK-------LLLAKGAD-------V   68 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHH-------HHTTTTCC-------T
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHH-------HHHHcCCC-------C
Confidence            357889999999999999999999999999999999999999999999999755444       44444544       6


Q ss_pred             hccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcch
Q psy8766          87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLH  131 (135)
Q Consensus        87 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~  131 (135)
                      +..+..|+||||+|+..++.+++++|+++|++++.++..|.+|-.
T Consensus        69 ~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~~  113 (115)
T 2l6b_A           69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH  113 (115)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC----
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccccc
Confidence            778889999999999999999999999999999999999998853

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=9.6e-27  Score=123.65  Aligned_cols=93  Identities=39%  Similarity=0.547  Sum_probs=82.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCC
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK   91 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (135)
                      +|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.++++++..       .+..       ++..+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-------~ga~-------~~~~d~   66 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-------AGAD-------VNAKDK   66 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC-------TTCCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC-------CCccCC
Confidence            48999999999999999999999999999999999999999999998666655544       3444       678889


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                      .|+||||+|+..++.+++++|+++|++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           67 NGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=2.6e-27  Score=148.66  Aligned_cols=116  Identities=20%  Similarity=0.206  Sum_probs=71.1

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCC-chHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR-RNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..++.++++++.       ..+.    
T Consensus        85 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll-------~~g~----  153 (285)
T 3kea_A           85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL-------SEIP----  153 (285)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH-------TTSC----
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH-------hCCC----
Confidence            44444444444444444444444444444444444444444444 44444444444433222222       1111    


Q ss_pred             hhhhhhccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCc-chhcc
Q psy8766          82 IQNLLNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNNSNESP-LHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tp-l~~a~  134 (135)
                           ...+. .|.||||+|+..|+.+++++|+++|++++.++..|.|| |++|+
T Consensus       154 -----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~  203 (285)
T 3kea_A          154 -----STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAI  203 (285)
T ss_dssp             -----TTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHH
T ss_pred             -----ccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHH
Confidence                 11222 78899999999999999999999999999999999998 99886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.6e-27  Score=144.52  Aligned_cols=103  Identities=18%  Similarity=0.111  Sum_probs=90.1

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++++++.       +.+..   
T Consensus        43 ~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll-------~~ga~---  112 (229)
T 2vge_A           43 EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV-------QHGAA---  112 (229)
T ss_dssp             HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-------TTTCC---
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-------HcCCC---
Confidence            58899999999999999999999999999999999999999999999999999999865555444       44444   


Q ss_pred             hhhhhhccC-CCCCcHHHHH--HhcCcHHHHHHHHHcCCC
Q psy8766          82 IQNLLNEKD-KTGCSPLHYA--SREGHIISLENLINLGAC  118 (135)
Q Consensus        82 ~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~ll~~g~~  118 (135)
                          ++..+ ..|+||||+|  +..++.+++++|+++|++
T Consensus       113 ----~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~  148 (229)
T 2vge_A          113 ----IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS  148 (229)
T ss_dssp             ----TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH
T ss_pred             ----cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC
Confidence                56665 6999999999  999999999999987544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=6.4e-27  Score=136.71  Aligned_cols=111  Identities=33%  Similarity=0.419  Sum_probs=98.9

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      ...+.+||+.|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..       ++..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~-------~~~~   76 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-------NGAD-------VNAV   76 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC-------TTCC
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC-------CCcc
Confidence            4566799999999999999999999999999999999999999999998666665554       3333       6778


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        77 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  121 (169)
T 2y1l_E           77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA  121 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            889999999999999999999999999999999999999999986

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=2.1e-26  Score=140.63  Aligned_cols=132  Identities=24%  Similarity=0.257  Sum_probs=85.1

Q ss_pred             CCCccccc-cCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC-----
Q psy8766           3 GADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG-----   76 (135)
Q Consensus         3 g~~~n~~~-~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~-----   76 (135)
                      |.+++..+ ..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++...........     
T Consensus        65 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t  144 (240)
T 3eu9_A           65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT  144 (240)
T ss_dssp             TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCc
Confidence            44454333 236666666666666666666666666666666666666666666666555555544211110000     


Q ss_pred             ---------cchhhhh------hhhhccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          77 ---------EASQGIQ------NLLNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        77 ---------~~~~~~~------~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                               .......      ..++..+. .|.||||+|+..++.+++++|+++|++++.++..|.||+++|+
T Consensus       145 ~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  218 (240)
T 3eu9_A          145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK  218 (240)
T ss_dssp             HHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred             HHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence                     0000000      00344554 8899999999999999999999999999999999999999986

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=2e-26  Score=143.74  Aligned_cols=119  Identities=25%  Similarity=0.297  Sum_probs=106.0

Q ss_pred             CCCCcccc-ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVL-DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~-~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|.++|.. +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..  
T Consensus        27 ~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~--   97 (285)
T 1wdy_A           27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-------KGAD--   97 (285)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-------TTCC--
T ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC--
Confidence            57889888 7889999999999999999999999999999999999999999999998666665554       3333  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeec----------CCCCCCcchhcc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK----------NNSNESPLHLAA  134 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~----------~~~g~tpl~~a~  134 (135)
                           ++..+..|.||||+|+..++.+++++|++.|++++..          +..|.|||++|+
T Consensus        98 -----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~  156 (285)
T 1wdy_A           98 -----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA  156 (285)
T ss_dssp             -----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred             -----CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence                 6778889999999999999999999999999999887          778999999986

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=5.2e-27  Score=145.28  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=100.2

Q ss_pred             CCCCccccc----cCCChHHHHHH---HhCCHHHHHHHHHcCCC-----------ccccccCCchHHHHHHHhCCCchHH
Q psy8766           2 TGADLNVLD----KEKRSPLLLAA---SRGGWKTVLTLVRNKAN-----------ILLKDINRRNILHLLVLNGGGHIKE   63 (135)
Q Consensus         2 ~g~~~n~~~----~~g~tpl~~a~---~~~~~~~~~~Ll~~g~~-----------~~~~~~~g~t~l~~a~~~~~~~~~~   63 (135)
                      +|++++..+    ..|.||||+|+   ..|+.+++++|++.|++           ....|..|.||||+|+..|+.++++
T Consensus        31 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  110 (260)
T 3jxi_A           31 HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVE  110 (260)
T ss_dssp             HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHH
T ss_pred             cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHH
Confidence            467777666    67999999999   67999999999998754           4455669999999999999977666


Q ss_pred             HHHHHHHHHhcCCcchhhhhhhhhccC--------------CCCCcHHHHHHhcCcHHHHHHHHH---cCCCeeecCCCC
Q psy8766          64 FAEEVAAVFLGEGEASQGIQNLLNEKD--------------KTGCSPLHYASREGHIISLENLIN---LGACINLKNNSN  126 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g  126 (135)
                      ++++.       +..       ++..+              ..|+||||+|+..|+.+++++|++   .|++++.+|..|
T Consensus       111 ~Ll~~-------ga~-------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g  176 (260)
T 3jxi_A          111 LLVEK-------GAD-------VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG  176 (260)
T ss_dssp             HHHHT-------TCC-------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTS
T ss_pred             HHHhC-------CCC-------cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCC
Confidence            66553       333       44454              579999999999999999999999   999999999999


Q ss_pred             CCcchhcc
Q psy8766         127 ESPLHLAA  134 (135)
Q Consensus       127 ~tpl~~a~  134 (135)
                      +||||+|+
T Consensus       177 ~TpLh~A~  184 (260)
T 3jxi_A          177 NTVLHALV  184 (260)
T ss_dssp             CCHHHHHH
T ss_pred             CcHHHHHH
Confidence            99999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=6.4e-27  Score=147.83  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             CCCCccc------cccCCChHHHHHHHh---CCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHH
Q psy8766           2 TGADLNV------LDKEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF   72 (135)
Q Consensus         2 ~g~~~n~------~~~~g~tpl~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~   72 (135)
                      .|+|+|.      .+..|.||||+|+..   ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++++.     
T Consensus       173 ~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-----  247 (301)
T 2b0o_E          173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-----  247 (301)
T ss_dssp             TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-----
T ss_pred             cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-----
Confidence            5788887      688999999999997   89999999999999999999999999999999998666555544     


Q ss_pred             hcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          73 LGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                        .+..       ++..+..|+|||++|+..++.+++++|++.|++      .|.|||++|++
T Consensus       248 --~gad-------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~  295 (301)
T 2b0o_E          248 --GRAL-------VGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYS  295 (301)
T ss_dssp             --TTCC-------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC----
T ss_pred             --cCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHh
Confidence              4444       778899999999999999999999999998876      58999999974

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=1.3e-26  Score=135.58  Aligned_cols=114  Identities=25%  Similarity=0.200  Sum_probs=97.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|++++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..   
T Consensus        58 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~ga~---  127 (172)
T 3v30_A           58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA-------RGAD---  127 (172)
T ss_dssp             HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             cCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            488999999999999999999999999999999999999999999999999999998766666554       3433   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESP  129 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tp  129 (135)
                          ++..+..|.|||++|+..++.+++++|+++|+++...+..|.||
T Consensus       128 ----~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          128 ----LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             ----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             ----ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence                67788999999999999999999999999999998888888887

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=5.8e-26  Score=131.63  Aligned_cols=104  Identities=22%  Similarity=0.207  Sum_probs=91.9

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|++++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++......          
T Consensus        59 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------  128 (162)
T 1ihb_A           59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS----------  128 (162)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC----------
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC----------
Confidence            5899999999999999999999999999999999999999999999999999999987777666654321          


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                         .++..+..|+||||+|+..++.+++++|+++|++
T Consensus       129 ---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          129 ---NVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             ---CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence               1467788999999999999999999999999985

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=9.5e-27  Score=150.84  Aligned_cols=133  Identities=23%  Similarity=0.291  Sum_probs=89.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcC---CCccccccCCchHHHHHHHhC---CCchHHHHHHHHHHHhc-
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK---ANILLKDINRRNILHLLVLNG---GGHIKEFAEEVAAVFLG-   74 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~a~~~~---~~~~~~~~~~~~~~~~~-   74 (135)
                      +|++++.++..|.||||+|+..|+.+++++|++.+   ++++..+..|.||||+|+..+   +.++++++......... 
T Consensus       188 ~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~  267 (373)
T 2fo1_E          188 AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD  267 (373)
T ss_dssp             TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC
T ss_pred             CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccc
Confidence            46677777777777777777777777777777665   566666667777777766665   34444444433211110 


Q ss_pred             ----------CCc----------chhhhh-------hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCC
Q psy8766          75 ----------EGE----------ASQGIQ-------NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNE  127 (135)
Q Consensus        75 ----------~~~----------~~~~~~-------~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~  127 (135)
                                .+.          ....+.       ..++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus       268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~  347 (373)
T 2fo1_E          268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH  347 (373)
T ss_dssp             SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSC
T ss_pred             cccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCC
Confidence                      000          000000       11456778899999999999999999999999999999999999


Q ss_pred             Ccchhcc
Q psy8766         128 SPLHLAA  134 (135)
Q Consensus       128 tpl~~a~  134 (135)
                      |||++|+
T Consensus       348 t~l~~A~  354 (373)
T 2fo1_E          348 TARQLAQ  354 (373)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=7.7e-26  Score=127.86  Aligned_cols=101  Identities=30%  Similarity=0.341  Sum_probs=90.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.++++++..       .+..   
T Consensus        36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~---  105 (136)
T 2jab_A           36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-------HGAD---  105 (136)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-------TTCC---
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            589999999999999999999999999999999999999999999999999999998666665554       3333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLG  116 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g  116 (135)
                          ++..+..|+|||++|+..++.+++++|+++|
T Consensus       106 ----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          106 ----VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             ----CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                6778899999999999999999999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=6.6e-27  Score=132.26  Aligned_cols=102  Identities=22%  Similarity=0.157  Sum_probs=92.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccC-CchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|+++|.++..|.||||+|+. ++.+++++|+++|++++.++.. |.||||+|+..++.++++++..       .+..  
T Consensus        34 ~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~ga~--  103 (136)
T 1d9s_A           34 AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-------AGAR--  103 (136)
T ss_dssp             TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHH-------TCCC--
T ss_pred             cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC--
Confidence            589999999999999999999 9999999999999999999999 9999999999998666655554       3443  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                           ++..+..|+||||+|+..++.+++++|+++|+|
T Consensus       104 -----~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          104 -----LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -----CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                 677889999999999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=9.4e-26  Score=140.74  Aligned_cols=133  Identities=23%  Similarity=0.208  Sum_probs=101.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcC------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE------   75 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~------   75 (135)
                      +|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++++..........      
T Consensus        61 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  140 (285)
T 1wdy_A           61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED  140 (285)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHH
Confidence            58899999999999999999999999999999999999999999999999999999988877776542211100      


Q ss_pred             -------Cc----------chhhhhh-------hhhccCCCCCcHHHHHHhcCc----HHHHHHHHHcCCCeeecCCCCC
Q psy8766          76 -------GE----------ASQGIQN-------LLNEKDKTGCSPLHYASREGH----IISLENLINLGACINLKNNSNE  127 (135)
Q Consensus        76 -------~~----------~~~~~~~-------~~~~~~~~~~t~l~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~  127 (135)
                             +.          ....+..       .++..+..|.||||+|+..++    .+++++|+++|++++.++..|.
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~  220 (285)
T 1wdy_A          141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK  220 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC
Confidence                   00          0000010       134455667777777777777    7777777777777777777777


Q ss_pred             Ccchhcc
Q psy8766         128 SPLHLAA  134 (135)
Q Consensus       128 tpl~~a~  134 (135)
                      ||||+|+
T Consensus       221 t~L~~A~  227 (285)
T 1wdy_A          221 TPLILAV  227 (285)
T ss_dssp             CHHHHHH
T ss_pred             cHHHHHH
Confidence            8877775

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=137.47  Aligned_cols=119  Identities=24%  Similarity=0.223  Sum_probs=94.4

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      +|++++.++..|.||||+|+..|+.+++++|++.|.+++..+ ..|.||||+|+..++.++++++.+       .+..  
T Consensus        31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-------~g~~--  101 (240)
T 3eu9_A           31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK-------YGAD--  101 (240)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH-------TTCC--
T ss_pred             cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH-------cCCC--
Confidence            577888888888888888888888888888888888777554 448888888888887655555443       2332  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                           ++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+
T Consensus       102 -----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~  150 (240)
T 3eu9_A          102 -----PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA  150 (240)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             -----CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Confidence                 5667778889999999999999999999999999888888999998875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=3.7e-26  Score=143.85  Aligned_cols=112  Identities=28%  Similarity=0.415  Sum_probs=101.1

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        10 ~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      +..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++++.       .+..       ++..
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-------~ga~-------~~~~  102 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-------NGAN-------INQP  102 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-------TTCC-------TTCC
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-------CCCC-------CCCC
Confidence            4567899999999999999999999999999999999999999999998766666554       3333       6778


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +..|+||||+|+..|+.+++++|+++|++++.++..|.|||++|++
T Consensus       103 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  148 (299)
T 1s70_B          103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE  148 (299)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHh
Confidence            8899999999999999999999999999999999999999999864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=2e-25  Score=142.74  Aligned_cols=134  Identities=22%  Similarity=0.219  Sum_probs=101.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCcccc----------ccCCchHHHHHHHhCCCchHHHHHHHH-H
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLK----------DINRRNILHLLVLNGGGHIKEFAEEVA-A   70 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~~~~~~-~   70 (135)
                      .++++|.+|..|.||||+|+..|+.+++++|++.|++++.+          +..|.||||+|+..|+.+++++++... .
T Consensus       114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga  193 (337)
T 4g8k_A          114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  193 (337)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred             ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC
Confidence            46788888999999999999999999999999998887654          446889999999999888888776421 0


Q ss_pred             H----------------HhcCCcchhhhhh-------hhhccCCCCCcHHHHHHhcCcHHHHHHHHHc-CCCeeecCCCC
Q psy8766          71 V----------------FLGEGEASQGIQN-------LLNEKDKTGCSPLHYASREGHIISLENLINL-GACINLKNNSN  126 (135)
Q Consensus        71 ~----------------~~~~~~~~~~~~~-------~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g  126 (135)
                      .                ..........+..       .++.++..|+||||+|+..++.++++.|++. |++++.+|..|
T Consensus       194 d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G  273 (337)
T 4g8k_A          194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  273 (337)
T ss_dssp             CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTS
T ss_pred             CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCC
Confidence            0                0000000001100       1456778899999999999999999999975 89999999999


Q ss_pred             CCcchhccC
Q psy8766         127 ESPLHLAAR  135 (135)
Q Consensus       127 ~tpl~~a~~  135 (135)
                      +||||+|++
T Consensus       274 ~TpL~~A~~  282 (337)
T 4g8k_A          274 KTALLLAVE  282 (337)
T ss_dssp             CBHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999999863

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=2.9e-26  Score=133.32  Aligned_cols=112  Identities=30%  Similarity=0.326  Sum_probs=98.6

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHH-cCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhh
Q psy8766           9 LDKEKRSPLLLAASRGGWKTVLTLVR-NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLN   87 (135)
Q Consensus         9 ~~~~g~tpl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (135)
                      .+.+|.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..++.++++++..       .+..       ++
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~-------~~   69 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-------HGAD-------VH   69 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC-------TT
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHh-------cCCC-------CC
Confidence            35778999999999999999999997 577888889999999999999998666666554       3333       67


Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          88 EKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        88 ~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ..+..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  116 (165)
T 3twr_A           70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA  116 (165)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            78889999999999999999999999999999999999999999986

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=2.9e-25  Score=127.73  Aligned_cols=107  Identities=31%  Similarity=0.307  Sum_probs=95.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCC
Q psy8766          13 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKT   92 (135)
Q Consensus        13 g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (135)
                      ..+||+.|+..|+.+++++|++.|++++ .+..|.||||+|+..++.++++++.       +.+..       ++..+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll-------~~g~~-------~~~~~~~   66 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-------RAGVS-------RDARTKV   66 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-------TTTCC-------TTCCCTT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHH-------HcCCC-------CCCCCCC
Confidence            4689999999999999999999999886 5889999999999999866555544       34443       6778889


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        93 ~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      |+||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        67 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  108 (153)
T 1awc_B           67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT  108 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=5.8e-25  Score=137.03  Aligned_cols=129  Identities=22%  Similarity=0.236  Sum_probs=90.9

Q ss_pred             CCCCcccccc--------------CCChHHHHHHHhCCHHHHHHHHH---cCCCccccccCCchHHHHHHHhCCC--chH
Q psy8766           2 TGADLNVLDK--------------EKRSPLLLAASRGGWKTVLTLVR---NKANILLKDINRRNILHLLVLNGGG--HIK   62 (135)
Q Consensus         2 ~g~~~n~~~~--------------~g~tpl~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~l~~a~~~~~~--~~~   62 (135)
                      +|+++|.++.              .|.||||+|+..|+.+++++|++   .|++++.+|..|.||||+|+..++.  ...
T Consensus       123 ~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~  202 (273)
T 2pnn_A          123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT  202 (273)
T ss_dssp             TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHH
T ss_pred             CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHH
Confidence            5888888886              79999999999999999999999   9999999999999999999998873  222


Q ss_pred             HHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCC-CeeecCCCCCCcc
Q psy8766          63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA-CINLKNNSNESPL  130 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~-~~~~~~~~g~tpl  130 (135)
                      +++..+...++..+...+.....++..+..|+||||+|+..|+.+++++|+++|+ ++......+.+|.
T Consensus       203 ~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          203 KFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            2223333344333322111011124588999999999999999999999999999 8888777776664

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=1.1e-25  Score=132.55  Aligned_cols=110  Identities=24%  Similarity=0.291  Sum_probs=95.8

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHc-CCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          11 KEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        11 ~~g~tpl~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      .++.+|||.|+..|+.+++++|++. +.+++.++..|.||||+|+..++.++++++..       .+..       ++..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~-------~~~~   68 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-------RGAR-------INVM   68 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC-------TTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH-------cCCC-------CCCc
Confidence            4678999999999999999999987 77899999999999999999998666555554       3433       6778


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  113 (179)
T 3f6q_A           69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC  113 (179)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            889999999999999999999999999999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.9e-26  Score=141.44  Aligned_cols=119  Identities=17%  Similarity=0.110  Sum_probs=101.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++++..       .+..   
T Consensus        59 ~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-------~ga~---  128 (239)
T 1ycs_B           59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE-------SGAA---  128 (239)
T ss_dssp             TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            688999999999999999999999999999999999999999999999999999998666555554       3443   


Q ss_pred             hhhhhhccCCCCC-cHHHHH--HhcCcHHHHHHHHHcCCCeeec---------CCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGC-SPLHYA--SREGHIISLENLINLGACINLK---------NNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~ll~~g~~~~~~---------~~~g~tpl~~a~  134 (135)
                          ++..+..+. ||||+|  +..|+.+++++|+++|++++..         +..+.+|.+++.
T Consensus       129 ----~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          129 ----VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             ----TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             ----cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence                666776666 999999  7889999999999998887665         555677776654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=6.1e-25  Score=122.27  Aligned_cols=103  Identities=41%  Similarity=0.578  Sum_probs=92.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|++++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++++..       .+..   
T Consensus        24 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-------~g~~---   93 (126)
T 1n0r_A           24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-------AGAD---   93 (126)
T ss_dssp             HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHH-------cCCC---
Confidence            478999999999999999999999999999999999999999999999999999998766666554       3333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                          ++..+..|.|||++|+..++.+++++|+++|++
T Consensus        94 ----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           94 ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ----CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                677888999999999999999999999999985

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=6.4e-25  Score=126.54  Aligned_cols=99  Identities=28%  Similarity=0.317  Sum_probs=89.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.++++++...        ..   
T Consensus        57 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------~~---  125 (156)
T 1bd8_A           57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--------SD---  125 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--------SC---
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--------cC---
Confidence            5899999999999999999999999999999999999999999999999999999987766665543        22   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINL  115 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  115 (135)
                          ++..+..|.|||++|+..++.+++++|+++
T Consensus       126 ----~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          126 ----LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             ----TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ----CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence                677889999999999999999999999864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.3e-24  Score=136.01  Aligned_cols=99  Identities=20%  Similarity=0.160  Sum_probs=87.7

Q ss_pred             ccccccCCChHHHHHHHh---CCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhh
Q psy8766           6 LNVLDKEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGI   82 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
                      ++..+..|.||||+|+..   ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++++.       .+..    
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~-------~gad----  230 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-------GKAS----  230 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC----
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC----
Confidence            445588999999999999   89999999999999999999999999999999998666555544       4444    


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        83 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                         ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       231 ---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          231 ---IEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             ---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence               788899999999999999999999999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=6.4e-24  Score=135.79  Aligned_cols=117  Identities=26%  Similarity=0.269  Sum_probs=90.0

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHcCCCcccccc-CCchHHHHHHHhCCCchHHHHHHHHHH------------------
Q psy8766          11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI-NRRNILHLLVLNGGGHIKEFAEEVAAV------------------   71 (135)
Q Consensus        11 ~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~~~------------------   71 (135)
                      .+|.||||.|+..|+.++|++|+++|++++.++. .|+||||+|+..|+.+++++++.....                  
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            4567888888888888888888888888887764 478888888888887777776653211                  


Q ss_pred             --------HhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeec----------CCCCCCcchhc
Q psy8766          72 --------FLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK----------NNSNESPLHLA  133 (135)
Q Consensus        72 --------~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~----------~~~g~tpl~~a  133 (135)
                              +...+..       ++..+..|.||+|+|+..++.+++++|+++|++++..          +..|.|||++|
T Consensus       103 ~~~~~~~~~~~~~~~-------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A  175 (337)
T 4g8k_A          103 GSVKLLKLFLSKGAD-------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  175 (337)
T ss_dssp             TCHHHHHHHHTTTCC-------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred             ccchhhHHhhhccch-------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Confidence                    1111111       5678889999999999999999999999999988654          44688999998


Q ss_pred             c
Q psy8766         134 A  134 (135)
Q Consensus       134 ~  134 (135)
                      +
T Consensus       176 ~  176 (337)
T 4g8k_A          176 A  176 (337)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=7.1e-25  Score=141.57  Aligned_cols=109  Identities=20%  Similarity=0.235  Sum_probs=84.3

Q ss_pred             CCChHHHHHHHh-CCHHHHHHHHHcCCCccccc--cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhc
Q psy8766          12 EKRSPLLLAASR-GGWKTVLTLVRNKANILLKD--INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNE   88 (135)
Q Consensus        12 ~g~tpl~~a~~~-~~~~~~~~Ll~~g~~~~~~~--~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (135)
                      .+.|+||.|+.. ++.+++++|++.|++++..+  ..|.||||+|+..++.+++++++.       .+..       ++.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-------~Gad-------vn~  263 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-------NGAN-------VNQ  263 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC-------TTC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-------cCCC-------CCC
Confidence            445788888888 88888888888888888777  788888888888887555544443       3333       667


Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        89 ~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .+..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus       264 ~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~  309 (368)
T 3jue_A          264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM  309 (368)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH
Confidence            7778888888888888888888888888888888888888888875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=2.7e-24  Score=127.39  Aligned_cols=113  Identities=19%  Similarity=0.160  Sum_probs=94.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCC------HHHHHHHHHcCCCccccccCCc-hHHHHHHHhCCCchHHHHHHHHHHHhc
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGG------WKTVLTLVRNKANILLKDINRR-NILHLLVLNGGGHIKEFAEEVAAVFLG   74 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~------~~~~~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~~~~~~~~~~~   74 (135)
                      +|+|+|.+|..|+||||+|+..++      .+++++|++.|++++.+|..|. ||||+|+..+...  .-...+...++.
T Consensus        64 ~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~--~~~~~iv~~Ll~  141 (186)
T 3t8k_A           64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE--NEMIPLYKLIFS  141 (186)
T ss_dssp             TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH--HHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh--hhHHHHHHHHHH
Confidence            699999999999999999999987      6889999999999999999999 9999999854321  123345566676


Q ss_pred             -CCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecC
Q psy8766          75 -EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN  123 (135)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~  123 (135)
                       .+..       ++.++..|+||||+|+..++.+++++|.+.....+.++
T Consensus       142 ~~gad-------~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          142 QSGLQ-------LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             STTCC-------TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             hcCCC-------CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence             6766       88899999999999999999999999998755555443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=5.3e-24  Score=134.51  Aligned_cols=108  Identities=23%  Similarity=0.255  Sum_probs=95.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCCccc------cccCCchHHHHHHHh---CCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766          13 KRSPLLLAASRGGWKTVLTLVRNKANILL------KDINRRNILHLLVLN---GGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus        13 g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      ..++|+.|+..++.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++++.       .+..     
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-------~gad-----  218 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-------NGGH-----  218 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH-------HSSC-----
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh-------cCCC-----
Confidence            45789999999999999999999999988      689999999999997   55445444444       3433     


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                        ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       219 --vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~  267 (301)
T 2b0o_E          219 --LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR  267 (301)
T ss_dssp             --TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHH
T ss_pred             --CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence              7788899999999999999999999999999999999999999999986

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1e-24  Score=132.32  Aligned_cols=112  Identities=17%  Similarity=0.134  Sum_probs=86.4

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHc-CCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      .|+++|.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++++..       +..  
T Consensus        95 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-------ga~--  165 (222)
T 3ehr_A           95 NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-------GAR--  165 (222)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-------TCC--
T ss_pred             CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-------CCC--
Confidence            5899999999999999999999999999999998 999999999999999999999987766666654       333  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCC
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNE  127 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~  127 (135)
                           ++..+..|+|||++|+..+..++++.|++.|+.....+..+.
T Consensus       166 -----~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          166 -----TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             -----SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             -----CccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence                 677889999999999999999999999999999887766543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=8.1e-24  Score=136.66  Aligned_cols=118  Identities=23%  Similarity=0.263  Sum_probs=90.7

Q ss_pred             CCCCccccc--cCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcch
Q psy8766           2 TGADLNVLD--KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS   79 (135)
Q Consensus         2 ~g~~~n~~~--~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
                      +|+|+|..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++++.       .+.. 
T Consensus       222 ~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~-------~Gad-  293 (368)
T 3jue_A          222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK-------RGAD-  293 (368)
T ss_dssp             TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------TTCC-
T ss_pred             cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH-------CcCC-
Confidence            689999998  899999999999999999999999999999999999999999999998666555544       4444 


Q ss_pred             hhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcC---CCeeecCCCCCCcchhc
Q psy8766          80 QGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG---ACINLKNNSNESPLHLA  133 (135)
Q Consensus        80 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g---~~~~~~~~~g~tpl~~a  133 (135)
                            ++..+..|.||||+|+..++.+++++|+..+   .+....+..+.|++.++
T Consensus       294 ------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          294 ------LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             ------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             ------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence                  7888999999999999999999999999765   33344455667776654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.90  E-value=9.4e-24  Score=141.24  Aligned_cols=107  Identities=23%  Similarity=0.262  Sum_probs=95.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCCcccc------ccCCchHHHHHHH---hCCCchHHHHHHHHHHHhcCCcchhhhhh
Q psy8766          14 RSPLLLAASRGGWKTVLTLVRNKANILLK------DINRRNILHLLVL---NGGGHIKEFAEEVAAVFLGEGEASQGIQN   84 (135)
Q Consensus        14 ~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~------~~~g~t~l~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
                      .+.||.|+..|+.+.++.|++.|++++..      +..|.||||+|+.   .|+.+++++++.       .+..      
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-------~ga~------  199 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-------NGGH------  199 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-------HSCC------
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-------cCCC------
Confidence            46799999999999999999999999887      8899999999976   676555555544       3444      


Q ss_pred             hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          85 LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        85 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                       ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+
T Consensus       200 -vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  248 (497)
T 3lvq_E          200 -LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR  248 (497)
T ss_dssp             -TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHH
T ss_pred             -CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence             7889999999999999999999999999999999999999999999986

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=1.5e-23  Score=131.18  Aligned_cols=108  Identities=24%  Similarity=0.299  Sum_probs=93.8

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCCcc------ccccCCchHHHHHHHh---CCCchHHHHHHHHHHHhcCCcchhhhh
Q psy8766          13 KRSPLLLAASRGGWKTVLTLVRNKANIL------LKDINRRNILHLLVLN---GGGHIKEFAEEVAAVFLGEGEASQGIQ   83 (135)
Q Consensus        13 g~tpl~~a~~~~~~~~~~~Ll~~g~~~~------~~~~~g~t~l~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (135)
                      ..++|+.|+..++.+.++.+++.|++++      ..+..|.||||+|+..   ++.+++++++.       .+..     
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-------~ga~-----  197 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-------NSGN-----  197 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-------HCSC-----
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH-------CCCC-----
Confidence            3578999999999999999999999854      4488999999999999   66555555444       3444     


Q ss_pred             hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                        ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       198 --in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  246 (278)
T 1dcq_A          198 --LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK  246 (278)
T ss_dssp             --TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             --ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHH
Confidence              7888999999999999999999999999999999999999999999986

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=2.2e-23  Score=115.85  Aligned_cols=92  Identities=21%  Similarity=0.182  Sum_probs=78.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.++++++..       .+..   
T Consensus        29 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-------~ga~---   98 (123)
T 3aaa_C           29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-------KGAD---   98 (123)
T ss_dssp             TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------TTCC---
T ss_pred             cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            588999999999999999999999999999999999999999999999999999998666555554       3433   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHH
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHII  107 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~  107 (135)
                          ++..+..|+||+++|...+..+
T Consensus        99 ----~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           99 ----KTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             ----TTCCCTTSCCHHHHCCCHHHHH
T ss_pred             ----CCCcCCCCCCHHHHhCCHHHHH
Confidence                6778899999999995444333

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=2e-22  Score=119.03  Aligned_cols=87  Identities=24%  Similarity=0.291  Sum_probs=76.2

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..++.++++++...       +..   
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-------ga~---  135 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-------GAD---  135 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-------TCC---
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-------CCC---
Confidence            78999999999999999999999999999999999999998 8999999999999987777666654       333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASRE  103 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~  103 (135)
                          ++..+..|+||||+|+..
T Consensus       136 ----~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          136 ----IEVEDERGLTALELAREI  153 (183)
T ss_dssp             ----TTCCCTTSCCHHHHHHHH
T ss_pred             ----CcCCCCCCCCHHHHHHHh
Confidence                677888888888888765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=8.9e-24  Score=119.45  Aligned_cols=101  Identities=26%  Similarity=0.233  Sum_probs=86.6

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|++++.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.++++++..       .+..   
T Consensus        32 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~ga~---  101 (137)
T 3c5r_A           32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS-------YGAS---  101 (137)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC---
Confidence            588999999999999999999999999999999999999999999999999999998666665554       3433   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLG  116 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g  116 (135)
                          ++..+..|.||+++|+..+..+++++|.+.+
T Consensus       102 ----~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A          102 ----RNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             ----TTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             ----CCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence                6788999999999999999988887776543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.88  E-value=1.4e-22  Score=110.55  Aligned_cols=93  Identities=27%  Similarity=0.258  Sum_probs=78.7

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhh
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNL   85 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (135)
                      ++..+.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++++.       .+..       
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-------~ga~-------   82 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-------AGAD-------   82 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC-------
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-------cCCC-------
Confidence            34567899999999999999999999999999999999999999999999998666555544       3433       


Q ss_pred             hhccCCCCCcHHHHHHhcCcHHHHHHH
Q psy8766          86 LNEKDKTGCSPLHYASREGHIISLENL  112 (135)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~l  112 (135)
                      ++..+..|+||||+|+..++.+++++|
T Consensus        83 ~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            677889999999999999999999886

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1.2e-22  Score=124.85  Aligned_cols=102  Identities=24%  Similarity=0.236  Sum_probs=85.0

Q ss_pred             CCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccc-cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         3 g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++++..       +..   
T Consensus        67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------ga~---  136 (244)
T 3ui2_A           67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-------GAD---  136 (244)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-------TCC---
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-------CCC---
Confidence            78999999999999999999999999999999999999998 8899999999999987766665543       333   


Q ss_pred             hhhhhhccCCCCCcHHHHHH----------------hcCcHHHHHHHHHcCCC
Q psy8766          82 IQNLLNEKDKTGCSPLHYAS----------------REGHIISLENLINLGAC  118 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~----------------~~~~~~~~~~ll~~g~~  118 (135)
                          ++..+..|+||||+|+                ..|+.+++++|++.+.+
T Consensus       137 ----~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          137 ----IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ----TTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ----CCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                5556666666666665                67889999999986443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.86  E-value=4.2e-23  Score=131.73  Aligned_cols=102  Identities=18%  Similarity=0.126  Sum_probs=73.6

Q ss_pred             HHHHhCCHHHHHHHHHcCCCccc-cccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHH
Q psy8766          19 LAASRGGWKTVLTLVRNKANILL-KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPL   97 (135)
Q Consensus        19 ~a~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l   97 (135)
                      +|+..+..++++.|++.|++++. +|..|.||||+|+..|+.++++++++       .+..       ++..+..|+|||
T Consensus       103 ~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-------~Gad-------~n~~d~~g~TpL  168 (327)
T 1sw6_A          103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-------HGSN-------RLYGDNMGESCL  168 (327)
T ss_dssp             -CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC-------TTBCCTTCCCHH
T ss_pred             HHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-------cCCC-------CCCcCCCCCCHH
Confidence            33444444555566666677777 78888888888888887655555544       3433       677788888888


Q ss_pred             HHHHhcCc---HHHHHHHHHcC-CCeeecCCCCCCcchhcc
Q psy8766          98 HYASREGH---IISLENLINLG-ACINLKNNSNESPLHLAA  134 (135)
Q Consensus        98 ~~a~~~~~---~~~~~~ll~~g-~~~~~~~~~g~tpl~~a~  134 (135)
                      |+|+..|+   .++++.|++.+ ++++.+|..|+||||+|+
T Consensus       169 h~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  209 (327)
T 1sw6_A          169 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII  209 (327)
T ss_dssp             HHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHH
Confidence            88888887   57777777765 678888888888888875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=5.4e-23  Score=133.22  Aligned_cols=114  Identities=18%  Similarity=0.135  Sum_probs=85.6

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHcCCCc---cccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhh
Q psy8766           9 LDKEKRSPLLLAASRGGWKTVLTLVRNKANI---LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNL   85 (135)
Q Consensus         9 ~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (135)
                      ++.+++||||+|+..|+.+++++|++.|+..   ...+..|.||||+|+..|+.++++++......       ....  .
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad-------~~~~--~  158 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT-------EIMA--M  158 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-------THHH--H
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCC-------cccc--c
Confidence            3455679999999999999999999998732   24456788999999999998777777654310       0000  0


Q ss_pred             hhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeee--cCCCCCCcchhcc
Q psy8766          86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINL--KNNSNESPLHLAA  134 (135)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~--~~~~g~tpl~~a~  134 (135)
                      ++..+   .||||+|+..|+.+++++|+++|++++.  .|..|.|||++|+
T Consensus       159 i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa  206 (376)
T 2aja_A          159 IQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA  206 (376)
T ss_dssp             HSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             cCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHH
Confidence            22222   8999999999999999999999999887  8888999999987

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=4.7e-21  Score=101.52  Aligned_cols=76  Identities=42%  Similarity=0.645  Sum_probs=65.4

Q ss_pred             CCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCC
Q psy8766          45 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNN  124 (135)
Q Consensus        45 ~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~  124 (135)
                      +|.||||+|+..++.++++++..       .+..       ++..+..|+||||+|+..++.+++++|+++|++++.+|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-------~g~~-------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~   66 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-------AGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK   66 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-------TTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-------cCCC-------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            48899999999998666555543       3443       778889999999999999999999999999999999999


Q ss_pred             CCCCcchhcc
Q psy8766         125 SNESPLHLAA  134 (135)
Q Consensus       125 ~g~tpl~~a~  134 (135)
                      .|+|||++|+
T Consensus        67 ~g~t~l~~A~   76 (93)
T 1n0q_A           67 NGRTPLHLAA   76 (93)
T ss_dssp             TSCCHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            9999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=4.2e-22  Score=129.04  Aligned_cols=105  Identities=15%  Similarity=0.131  Sum_probs=81.5

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHcCCCc---cccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhh
Q psy8766           9 LDKEKRSPLLLAASRGGWKTVLTLVRNKANI---LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNL   85 (135)
Q Consensus         9 ~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (135)
                      .+..|.||||+|+..|+.+++++|+++|+++   +..+.. .||||+|+..|+.++++++...       +..       
T Consensus       124 ~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-------ga~-------  188 (376)
T 2aja_A          124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-------APT-------  188 (376)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-------CGG-------
T ss_pred             hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-------CCc-------
Confidence            3456789999999999999999999999762   333333 9999999999997777666653       222       


Q ss_pred             hhc--cCCCCCcHHHHHH-hcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          86 LNE--KDKTGCSPLHYAS-REGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        86 ~~~--~~~~~~t~l~~a~-~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      ++.  .+..|.||||+|+ ..|+.+++++|++.|++       |.||+++|++
T Consensus       189 ~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~  234 (376)
T 2aja_A          189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFE  234 (376)
T ss_dssp             GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTT
T ss_pred             cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHH
Confidence            232  4556889999999 99999999999987642       7888888864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=2.7e-19  Score=97.49  Aligned_cols=82  Identities=21%  Similarity=0.299  Sum_probs=67.7

Q ss_pred             ccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          39 ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        39 ~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                      +...+..|.||||+|+..++.+++++++.       .+..       ++..+..|+||||+|+..++.+++++|+++|++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-------~g~~-------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~   82 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMA-------NGAD-------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD   82 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHH-------TTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHH-------cCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34457899999999999998666555543       3333       677889999999999999999999999999999


Q ss_pred             eeecCCCCCCcchhcc
Q psy8766         119 INLKNNSNESPLHLAA  134 (135)
Q Consensus       119 ~~~~~~~g~tpl~~a~  134 (135)
                      ++.+|..|.|||++|+
T Consensus        83 ~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           83 VXAQDKFGKTAFDISI   98 (110)
T ss_dssp             TTCCCTTSCCHHHHHH
T ss_pred             ccccccCCCcHHHHHH
Confidence            9999999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=3.2e-18  Score=93.78  Aligned_cols=81  Identities=28%  Similarity=0.462  Sum_probs=69.7

Q ss_pred             ccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCee
Q psy8766          41 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN  120 (135)
Q Consensus        41 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~  120 (135)
                      .+|..|.||||+|+..++.++++       .++..+..       ++..+..|+||||+|+..++.+++++|+++|++++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~-------~Ll~~g~~-------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   69 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVK-------KLLSKGAD-------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN   69 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHH-------HHTTTTCC-------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHH-------HHHHcCCC-------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence            46889999999999999754444       44444444       67788999999999999999999999999999999


Q ss_pred             ecCCCCCCcchhccC
Q psy8766         121 LKNNSNESPLHLAAR  135 (135)
Q Consensus       121 ~~~~~g~tpl~~a~~  135 (135)
                      .+|..|.|||++|++
T Consensus        70 ~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A           70 ARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CCCTTCCCTTHHHHT
T ss_pred             ccCCCCCCHHHHHHH
Confidence            999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 2e-15
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 19/152 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           GA  NV + +  +PL +AA  G  +    L++NKA +  K  + +  LH     G  ++ 
Sbjct: 23  GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 63  EFAEEVAA-------------------VFLGEGEASQGIQNLLNEKDKTGCSPLHYASRE 103
           +   E  A                     +    A    +       K G +PLH A++ 
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 104 GHIISLENLINLGACINLKNNSNESPLHLAAR 135
           G +   E L+   A  N    +  +PLH+A  
Sbjct: 143 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 174

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 14/129 (10%)

Query: 7   NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
           N+ +K   +PL L A  G       L+++   +          LH+    G   + +F  
Sbjct: 258 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF-- 315

Query: 67  EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN 126
                           Q  +N K K G SPLH A+++GH   +  L+  GA  N  ++  
Sbjct: 316 ------------LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 363

Query: 127 ESPLHLAAR 135
            +PL +A R
Sbjct: 364 TTPLAIAKR 372

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A  N   K   +PL +A        V  L+    +      N    LH+        + 
Sbjct: 155 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 214

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
               +                   N +   G +PLH A++EGH   +  L++  A  NL 
Sbjct: 215 RSLLQ--------------YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 260

Query: 123 NNSNESPLHLAAR 135
           N S  +PLHL A+
Sbjct: 261 NKSGLTPLHLVAQ 273

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 8e-10
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
              A    + K+  +PL +AA  G  +    L+   A+      N    LH+ V +    
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
           I +                       +     G +PLH A+++  +    +L+  G   N
Sbjct: 180 IVKLLLPRGGS--------------PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 225

Query: 121 LKNNSNESPLHLAAR 135
            ++    +PLHLAA+
Sbjct: 226 AESVQGVTPLHLAAQ 240

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 16  PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 75
           PL +A+  G    V  L++  A+  + ++     LH+    G         EVA   L  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG-------HTEVAKYLLQN 55

Query: 76  GEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
                     +N K K   +PLH A+R GH   ++ L+   A  NL   +  +PLH+A
Sbjct: 56  KAK-------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            A +N   K+ ++PL  AA  G    V  L+ N AN  L        LH+    G     
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 63  EFAEEVAAVFLGEGEASQG-------------IQNLL------NEKDKTGCSPLHYASRE 103
               E  A      +                  + LL      N   K G +PLH A   
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 104 GHIISLENLINLGACINLKNNSNESPLHL 132
            ++  ++ L+  G   +    +  +PLH+
Sbjct: 176 NNLDIVKLLLPRGGSPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 96  PLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           PLH AS  GH+  ++NL+  GA  N+ N   E+PLH+AAR
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR 42

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 17/129 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
           G  ++   +   +PL +A+  G  K V  L++++A++  K     + LH     G     
Sbjct: 287 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG----- 341

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---IISLENLINLGACI 119
               ++  + L  G AS       NE    G +PL  A R G+      L+ + +  + +
Sbjct: 342 --HTDIVTLLLKNG-AS------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 392

Query: 120 NLKNNSNES 128
            + +    S
Sbjct: 393 LVSDKHRMS 401

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 5e-14
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
             GA +N +++   +PL  AAS+   +  + L+   AN   KD      +H     G   
Sbjct: 91  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 150

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
           +                     +   N +D  G +PLH A  E  +   + L++ GA I 
Sbjct: 151 MIHIL--------------LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 196

Query: 121 LKNNSNESPLHLAAR 135
           ++N   ++PL +A  
Sbjct: 197 IENKEEKTPLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 2e-09
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
            +     D++ R+ L  A S G  + V  L++    +  KD    + LH+    G   I 
Sbjct: 27  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIV 86

Query: 63  EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
           +      A               +N  ++ GC+PLHYA+ +        L+  GA  + K
Sbjct: 87  KALLGKGAQ--------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 132

Query: 123 NNSNESPLH 131
           ++   + +H
Sbjct: 133 DHYEATAMH 141

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 17  LLLAASRGGWKTV-LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 75
           +   A  G  + +  +++ +K+     D + R  LH     G   I EF           
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF----------- 55

Query: 76  GEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                 +   +N+KD  G SPLH A+  G    ++ L+  GA +N  N +  +PLH AA 
Sbjct: 56  ---LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS 112

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 5e-14
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 2/131 (1%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLVRN--KANILLKDINRRNILHLLVLNGGGHIKE 63
           L + D   R+ L       G        +      +      +   +            +
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 64  FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
              E     L   +    I N+LN +D  G + L+ A+R G+I  ++ L++ GA   + N
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 289

Query: 124 NSNESPLHLAA 134
            S   P+   A
Sbjct: 290 KSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 8/140 (5%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN----KANILLKDINRRNILHLLVLNGG 58
           G++    D    S L+ A          T           ++L+D   R ILH +++  G
Sbjct: 130 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 189

Query: 59  GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLIN---L 115
                 A +     L      +  + +         S  +  + E     LENL     +
Sbjct: 190 MTGCSAAAKYYLDILMGWIVKKQNRPI-QSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 116 GACINLKNNSNESPLHLAAR 135
              +N ++++ ++ L++AAR
Sbjct: 249 ANMLNAQDSNGDTCLNIAAR 268

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 5e-06
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 90  DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
           D+ G +PLH+ +   ++  +++L+  G+     +N  ES L  A
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILH 51
              LN  D    + L +AA  G    V  L+   A+  + + +    + 
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 8e-11
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 7   NVLDKEKRSPLLLAASRGGWKTVLTLV-RNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
             L K   + L+ AA +G  + +  L+    A++   D   RN L   +L+         
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS---SDDSDV 198

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI-NLGACINLKNN 124
           E +  + L  G         +N + + G +PL  A  + H+  ++ L+      IN  ++
Sbjct: 199 EAITHLLLDHGAD-------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

Query: 125 SNESPLHLAAR 135
             ++ L LA  
Sbjct: 252 DGKTALLLAVE 262

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 4e-09
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 17/125 (13%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVL----TLVRNKANILLKDINRRNILHLLVLNGG 58
           GAD+N  D   R+ L+ A        V      L+ + A++ ++    +  L L V    
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK- 230

Query: 59  GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC 118
                    +    L +          +N+ D  G + L  A         E L   GA 
Sbjct: 231 ------HLGLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 119 INLKN 123
            +  +
Sbjct: 279 TDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 95  SPLHYASREGHIISLENLINLGACINLKNNSN-ESPLHLAAR 135
             L  A +   +  ++ L+  GA +N +      +PLH A +
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ 48

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 44
             ++N  D + ++ LLLA      K    L +  A+    D+
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 89  KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +D+ G +P+  A++EG I  +  LI  GA +   + ++ +   LA  
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA 263

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.5 bits (93), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
             G++ +  D++ ++P++LAA  G  + V+ L++  A++   D        L   N   +
Sbjct: 209 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 268

Query: 61  IKEF 64
           I + 
Sbjct: 269 IVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 82  IQNLLNEKD-KTGCSPLHYASREGHIISLENLINL--------GACINLKNNSNESPLH 131
            +  +N  D +   + LH+ +        E+LI          GA +N  +    +PL 
Sbjct: 21  TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 33.6 bits (75), Expect = 0.004
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 15 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
          SP+ L     G   +   +  ++  ++   + R +LH +  N      E      A    
Sbjct: 2  SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 75 EGEASQGIQNLLNEKDKTGCSPLHY 99
             A       +N  D    +PL  
Sbjct: 62 AAGAD------VNAMDCDENTPLML 80

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           +N KD  G +PLH A+  G   +   L+     +   N   ++   +A  
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 8e-06
 Identities = 13/67 (19%), Positives = 29/67 (43%)

Query: 1   MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
               D+N+ D +  +PL  AA  G  +    LV N  ++   +   +    +   +  G+
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279

Query: 61  IKEFAEE 67
           ++E  ++
Sbjct: 280 LEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 8e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
                K+G + LH A+ +G+   L+ LI     +N+K+    +PLH AA 
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 7e-05
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 95  SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
           +    A   G    +  L+  GA IN  N    + LH A 
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC 81

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 7e-05
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 6   LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
                K   + L +AA++G  + +  L++ + ++ +KD +    LH     G        
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG-------K 244

Query: 66  EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASRE--GHIISLENLINL 115
           EE   + +            +   +K G +    A  +  G++  L+   NL
Sbjct: 245 EEACRILV-----ENLCD--MEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 85  LLNEKDKTGCSPLHYASREGHIISLENLINLGA---CINLKNNSNESPLHLAAR 135
           +     + G + LH A    H   L+ L+   A    ++L+N+  ++ LHLAA 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 5e-04
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLINLGA 117
              +   G +PL  A    + I    L   GA
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 7e-04
 Identities = 12/42 (28%), Positives = 16/42 (38%)

Query: 94  CSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
            +PLH A        LE L+  GA    +     +PL  A  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 42  KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
              +    LHL V++         E      LG           L+ ++  G + LH A+
Sbjct: 5   VTEDGDTALHLAVIHQ-------HEPFLDFLLGFSAG----HEYLDLQNDLGQTALHLAA 53

Query: 102 REGHIISLENLINLGACINLKNNSNESPLHLA 133
             G   ++E L   GA + +      + LHLA
Sbjct: 54  ILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 6e-08
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 93  GCSPLHYASREGHIISLENLINL----GACINLKNNSNESPLHLAAR 135
           G +PLH A  +G++ ++  L+NL    G  +++ NN  ++PLHLA  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-07
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           G S LH AS  G +  +  L+  GA  +LKN  N++PL +A  
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 219

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-07
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 93  GCSPLHYASREGHIIS----LENLINLGACINLKNNSNESPLHLAAR 135
           G S LH A            +  +    A +N +NN  ++PLHLA  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           G + LH A    +   +  L+  GA +N       SP  L   
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 187

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 6e-04
 Identities = 7/41 (17%), Positives = 9/41 (21%)

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNE 127
           N     G SP             + L  L          +E
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 4e-07
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 96  PLHYASREGHIISLENLINL-GACINLKNNSNESPLHLAAR 135
           PLH A  E     ++ L++   + +  K+     PLH +  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 43

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 6e-06
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 86  LNEKDKTGCSPLHYASREGHIISLENLI-NLGACINLKNNSNESPLHLAAR 135
           +N +DK G +PL +A  EGH  +   L+   GA  +L +N       +A  
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 13/111 (11%)

Query: 27  KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL 86
                  +  ++   K I    I  +  + G     +         L   +        +
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLC-----LLLTSDEI------V 119

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKN--NSNESPLHLAAR 135
                        A+  GH+  L  L  L     +      N     LAA 
Sbjct: 120 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 170

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 9e-05
 Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 15/127 (11%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGW---KTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
            +D +    +      +AA  G      T+  L+ +   + +          L   N  G
Sbjct: 80  WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN--G 137

Query: 60  HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
           H+      V                ++             A+  GH+  L  L  L    
Sbjct: 138 HL-----HVLNRLC-----ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 120 NLKNNSN 126
                  
Sbjct: 188 ATAMIQA 194

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 13/134 (9%)

Query: 3   GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI--LHLLVLNGGGH 60
              + V+  E      LAA  G    +  L       ++  I   N     L   NG  H
Sbjct: 116 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 175

Query: 61  IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
           +     E+A                   + +   +    A   GH   +  L++    + 
Sbjct: 176 VLNRLCELAPTE-----------ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 121 LKNNSNESPLHLAA 134
                         
Sbjct: 225 YAEIHEFEYGEKYV 238

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 7/139 (5%)

Query: 4   ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL-LVLNGGGHIK 62
           A   +  +   +    A  RG    +  L+     +   +I+        +      H+ 
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 247

Query: 63  EFAEEVAAVFLGEGEASQGI-QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
              E   A  L   +    +       +       L   + E  +  +  L+++     L
Sbjct: 248 RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 307

Query: 122 KN-----NSNESPLHLAAR 135
                        L LA R
Sbjct: 308 APTATIPGDANELLRLALR 326

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 2e-05
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 87  NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
           + +D    +PL  A+REG   + + L++  A   + ++ +  P  +A+ 
Sbjct: 150 DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE 198

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 4e-05
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 4   ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
           AD+N  D   ++ L  AA+    + V  L+ + AN   +D      L           +E
Sbjct: 114 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF-------LAARE 166

Query: 64  FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI 106
            + E +   L    A+          D     P   AS   H 
Sbjct: 167 GSYEASKALLDNF-AN------REITDHMDRLPRDVASERLHH 202

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 95  SPLHYASREGHIISLENLINLGACINLKNNSNESPLH 131
           + L  A+  G +  L +L+     +N +N    + L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (75), Expect = 0.003
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 93  GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
             + LH+A+   H   +E LI  GA ++ ++   ++   ++  
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.97
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.86
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.86
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.86
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.86
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.85
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.82
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.51

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.2e-32  Score=148.91  Aligned_cols=107  Identities=24%  Similarity=0.264  Sum_probs=98.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCC
Q psy8766          14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTG   93 (135)
Q Consensus        14 ~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (135)
                      .|||++|++.|+.+++++|++.|++++.++..|.||||+|+..++.+++.++..       .+..       ++.++..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~-------~g~d-------in~~d~~g   68 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-------KGAD-------INAPDKHH   68 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHH-------SSCT-------TTCCSSSC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccccccccccc-------ccce-------eeeccccc
Confidence            589999999999999999999999999999999999999999999887666554       3333       77889999


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          94 CSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        94 ~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +||||+|+..++.+++++|+++|++++.+|..|.|||++|.
T Consensus        69 ~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999999999999999999999999999999999999885

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-30  Score=162.82  Aligned_cols=133  Identities=26%  Similarity=0.265  Sum_probs=102.2

Q ss_pred             CCCCcccc-ccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCC---chHHHHHHHH--------
Q psy8766           2 TGADLNVL-DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG---HIKEFAEEVA--------   69 (135)
Q Consensus         2 ~g~~~n~~-~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~---~~~~~~~~~~--------   69 (135)
                      .++|+|.+ |.+|+||||+||..|+.+++++|+++|++++.+|..|+||||.|+..++.   ..+..+....        
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            36788876 89999999999999999999999999999999999999999999976531   1111111100        


Q ss_pred             -------------------------------HHHhcCCcc------------------------------hhhhhhhhhc
Q psy8766          70 -------------------------------AVFLGEGEA------------------------------SQGIQNLLNE   88 (135)
Q Consensus        70 -------------------------------~~~~~~~~~------------------------------~~~~~~~~~~   88 (135)
                                                     ..+...+..                              ...+...++.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence                                           000000000                              0001112467


Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        89 ~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      +|..|+||||+|++.|+.+++++|+++|++++++|..|.|||++|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            7899999999999999999999999999999999999999999997

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=157.26  Aligned_cols=119  Identities=27%  Similarity=0.377  Sum_probs=107.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+++|.+|.+|.||||+|+..++.+++++|+++|++++.++..|.||||+++..++..+.+++       ...+..   
T Consensus        92 ~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L-------~~~~~~---  161 (223)
T d1uoha_          92 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL-------LYYKAS---  161 (223)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-------HHTTCC---
T ss_pred             cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhh-------ccccce---
Confidence            5789999999999999999999999999999999999999999999999999999975544443       333333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                          ++..+..|+||||+|+..++.+++++|++.|++++.+|.+|+|||++|.
T Consensus       162 ----i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         162 ----TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             ----SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             ----eeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence                7788899999999999999999999999999999999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.5e-30  Score=159.67  Aligned_cols=134  Identities=22%  Similarity=0.292  Sum_probs=107.3

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC---c-
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG---E-   77 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~---~-   77 (135)
                      +|+|||.+|.+|+||||+|+..|+.+++++|+++|++++.++..|.||++++...++..+...+...........   . 
T Consensus        63 ~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          63 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             cCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccc
Confidence            589999999999999999999999999999999999999999999999999999887666555433211110000   0 


Q ss_pred             --------------c------------------------------------------hhhhhh-------hhhccCCCCC
Q psy8766          78 --------------A------------------------------------------SQGIQN-------LLNEKDKTGC   94 (135)
Q Consensus        78 --------------~------------------------------------------~~~~~~-------~~~~~~~~~~   94 (135)
                                    .                                          ......       ..+..+..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  222 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             cchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCC
Confidence                          0                                          000000       0244677899


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        95 t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      ||||+|+..|+.+++++|+++|++++.+|.+|+|||++|++
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~  263 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA  263 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999973

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-29  Score=152.27  Aligned_cols=134  Identities=19%  Similarity=0.098  Sum_probs=106.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCC-----
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG-----   76 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~-----   76 (135)
                      +|+++|.+|.+|+||||+|+..++.+++++|++.|++++.+|..|.|||++++..++..++..+...........     
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  107 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             CCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc
Confidence            588999999999999999999999999999999999999999999999999999998777666654211100000     


Q ss_pred             --------------cchhhhhh------hhhc-cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          77 --------------EASQGIQN------LLNE-KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        77 --------------~~~~~~~~------~~~~-~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                                    .....+..      .++. .+..|.||||+|+..|+.+++++|+++|+|++.+|..|+|||++|++
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~  187 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG  187 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT
T ss_pred             ccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHH
Confidence                          00000000      0222 34579999999999999999999999999999999999999999974

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.1e-28  Score=150.76  Aligned_cols=134  Identities=24%  Similarity=0.200  Sum_probs=101.9

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHH------------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA------------   69 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~------------   69 (135)
                      +|+|+|.+|.+|.||||+|+..|+.+++++|+++|+++...+..+.+||++++..++.++++.+....            
T Consensus        62 ~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  141 (291)
T d1s70b_          62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT  141 (291)
T ss_dssp             HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCcc
Confidence            58888888888999999999999999999999888888888888888888888887766665553210            


Q ss_pred             --------------HHHhc-CCcc----------------------------------------------hhhhhh----
Q psy8766          70 --------------AVFLG-EGEA----------------------------------------------SQGIQN----   84 (135)
Q Consensus        70 --------------~~~~~-~~~~----------------------------------------------~~~~~~----   84 (135)
                                    ..++. .+..                                              ...+..    
T Consensus       142 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  221 (291)
T d1s70b_         142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (291)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             ccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccc
Confidence                          00000 0000                                              000000    


Q ss_pred             --hhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          85 --LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        85 --~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                        .++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++
T Consensus       222 g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence              035577889999999999999999999999999999999999999999975

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.6e-28  Score=139.09  Aligned_cols=114  Identities=26%  Similarity=0.279  Sum_probs=94.6

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHH------------------------
Q psy8766          13 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV------------------------   68 (135)
Q Consensus        13 g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~------------------------   68 (135)
                      ..||||.|++.|+.+++++|+++|++++ .+..|+||||+|+..++.+.+..+...                        
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3599999999999999999999999887 699999999999999987665554331                        


Q ss_pred             --HHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          69 --AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        69 --~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                        ...+...+..       .+.++..|.||||+|+..|+.+++++|++.|++++.+|..|.|||++|+
T Consensus        81 ~~~~~l~~~~~~-------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~  141 (153)
T d1awcb_          81 NIVEVLLKHGAD-------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI  141 (153)
T ss_dssp             HHHHHHHTTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             eeeecccccCCc-------cccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHH
Confidence              1111111111       4567889999999999999999999999999999999999999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.4e-28  Score=148.11  Aligned_cols=130  Identities=22%  Similarity=0.186  Sum_probs=94.9

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHH---------------H
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA---------------A   70 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~---------------~   70 (135)
                      +|.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.++++++....               .
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  117 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHh
Confidence            6677888999999999999999999999999999999999999999998888776666542200               0


Q ss_pred             ----------HHhc-C--------------Cc--------------------chhhhhhh-------hhccCCCCCcHHH
Q psy8766          71 ----------VFLG-E--------------GE--------------------ASQGIQNL-------LNEKDKTGCSPLH   98 (135)
Q Consensus        71 ----------~~~~-~--------------~~--------------------~~~~~~~~-------~~~~~~~~~t~l~   98 (135)
                                .... .              ..                    ....+..+       ....+..|.||||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~  197 (255)
T d1oy3d_         118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (255)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             hhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccccc
Confidence                      0000 0              00                    00000000       1223457889999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          99 YASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        99 ~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +|+..++.+++++|+++|++++.+|..|+||||+|++
T Consensus       198 ~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~  234 (255)
T d1oy3d_         198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (255)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             ccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999998864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-28  Score=134.65  Aligned_cols=105  Identities=21%  Similarity=0.264  Sum_probs=92.8

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCC
Q psy8766          15 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC   94 (135)
Q Consensus        15 tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (135)
                      ++|+.|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++++...       +..       ++..+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-------g~~-------~~~~d~~g~   68 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-------GVN-------VNAADSDGW   68 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-------TCC-------TTCCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccc-------ccc-------cccccccCc
Confidence            678999999999999999999999999999999999999999987777666653       222       677889999


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCeeecCC-CCCCcchhc
Q psy8766          95 SPLHYASREGHIISLENLINLGACINLKNN-SNESPLHLA  133 (135)
Q Consensus        95 t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a  133 (135)
                      ||||+|+..|+.+++++|+++|++++.++. .++||+.++
T Consensus        69 tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~  108 (130)
T d1ycsb1          69 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC  108 (130)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             ccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            999999999999999999999999998765 488887665

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.6e-28  Score=138.57  Aligned_cols=118  Identities=22%  Similarity=0.272  Sum_probs=102.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .++++|.+|..|+||||+|+. ++.+++++|++.+.+++..+..|.+|+++++..++.++..++..       .+..   
T Consensus        25 ~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~---   93 (156)
T d1bd8a_          25 ELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-------HGAD---   93 (156)
T ss_dssp             TCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             CCCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccccccccccccc-------cccc---
Confidence            578999999999999998875 88999999999999999999999999999999998655544433       3333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                          ++..+..|+||||+|+..|+.+++++|+ .|++++.+|..|+|||++|++
T Consensus        94 ----~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~  142 (156)
T d1bd8a_          94 ----VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ  142 (156)
T ss_dssp             ----SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHH
T ss_pred             ----cccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHH
Confidence                6778889999999999999999999887 789999999999999999863

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-27  Score=144.43  Aligned_cols=134  Identities=23%  Similarity=0.246  Sum_probs=100.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccc---cccCCchHHHHHHHhCCCchHHHHHH-----------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL---KDINRRNILHLLVLNGGGHIKEFAEE-----------   67 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~---~~~~g~t~l~~a~~~~~~~~~~~~~~-----------   67 (135)
                      .+.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|++++...+..+++.....           
T Consensus        23 ~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (229)
T d1ixva_          23 KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT  102 (229)
T ss_dssp             CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCC
T ss_pred             CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4678899999999999999999999999999999998864   45678888888887765544433211           


Q ss_pred             -----------------HHHHHhcCCcch--------------------hhhh-------hhhhccCCCCCcHHHHHHhc
Q psy8766          68 -----------------VAAVFLGEGEAS--------------------QGIQ-------NLLNEKDKTGCSPLHYASRE  103 (135)
Q Consensus        68 -----------------~~~~~~~~~~~~--------------------~~~~-------~~~~~~~~~~~t~l~~a~~~  103 (135)
                                       +...++..+...                    ..+.       ..++..+..|+||||+|+..
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccc
Confidence                             111111111100                    0000       11456778999999999999


Q ss_pred             CcHHHHHHHHH-cCCCeeecCCCCCCcchhccC
Q psy8766         104 GHIISLENLIN-LGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus       104 ~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      ++.+++++|++ .|++++.+|.+|+|||++|++
T Consensus       183 ~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             TCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             ccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            99999999996 599999999999999999974

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.2e-28  Score=132.69  Aligned_cols=108  Identities=27%  Similarity=0.348  Sum_probs=92.7

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCC
Q psy8766          13 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKT   92 (135)
Q Consensus        13 g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (135)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||+|+|+ .|+.+++++       +++.+..       ++..+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~-------Ll~~ga~-------~~~~~~~   67 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAEL-------LLLHGAE-------PNCADPA   67 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHH-------HHTTTCC-------CCCCCTT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccc-------ccccccc-------ccccccc
Confidence            568999999999999999999999999999999999999775 576544444       4455544       5666666


Q ss_pred             CC-cHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          93 GC-SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        93 ~~-t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +. ||||+|+..|+.+++++|+++|++++.+|..|+|||++|++
T Consensus        68 ~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~  111 (125)
T d1bi7b_          68 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE  111 (125)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCHHHHHHH
Confidence            65 69999999999999999999999999999999999999863

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=137.33  Aligned_cols=49  Identities=37%  Similarity=0.473  Sum_probs=45.7

Q ss_pred             hccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        87 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +..+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|++
T Consensus       171 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            4467789999999999999999999999999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=7.6e-28  Score=143.23  Aligned_cols=134  Identities=21%  Similarity=0.246  Sum_probs=102.6

Q ss_pred             CCCCccc-cccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHH-------------
Q psy8766           2 TGADLNV-LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE-------------   67 (135)
Q Consensus         2 ~g~~~n~-~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~-------------   67 (135)
                      +|+|+|. .|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++...+.........             
T Consensus        11 ~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (209)
T d1ot8a_          11 QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG   90 (209)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTC
T ss_pred             CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5788987 58999999999999999999999999999999999999999999887665432222111             


Q ss_pred             --------------HHHHHhcCCcch--------------------hhh------hhhhhccCCCCCcHHHHHHhcCcHH
Q psy8766          68 --------------VAAVFLGEGEAS--------------------QGI------QNLLNEKDKTGCSPLHYASREGHII  107 (135)
Q Consensus        68 --------------~~~~~~~~~~~~--------------------~~~------~~~~~~~~~~~~t~l~~a~~~~~~~  107 (135)
                                    ....+...+...                    ..+      ...++..+..|.||||+|+..|+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_          91 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE  170 (209)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHH
Confidence                          011111110000                    000      0014557888999999999999999


Q ss_pred             HHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766         108 SLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus       108 ~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      ++++|+++|++++.+|..|.|||++|++
T Consensus       171 ~v~~Ll~~gad~n~~d~~g~Tpl~~A~~  198 (209)
T d1ot8a_         171 ASKALLDNFANREITDHMDRLPRDVASE  198 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999974

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-27  Score=134.69  Aligned_cols=119  Identities=24%  Similarity=0.240  Sum_probs=98.8

Q ss_pred             CCCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         1 ~~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      ++|+|+|.+|.+|.||||+|+ .++.+++++|+++|++++..+..+.+|++.++..++......+.       ..+..  
T Consensus        22 ~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-------~~~~~--   91 (156)
T d1ihba_          22 QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-------EFQAD--   91 (156)
T ss_dssp             TSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-------HTTCC--
T ss_pred             HCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccccccc-------ccccc--
Confidence            368888888888999998775 67888999999888888888888899999888888754443332       22222  


Q ss_pred             hhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCC-CeeecCCCCCCcchhcc
Q psy8766          81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA-CINLKNNSNESPLHLAA  134 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~-~~~~~~~~g~tpl~~a~  134 (135)
                           ++..+..+.+|+++|+..++.+++++|+++++ +++.+|..|+||||+|+
T Consensus        92 -----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~  141 (156)
T d1ihba_          92 -----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR  141 (156)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             -----ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHH
Confidence                 56778899999999999999999999999876 88999999999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.1e-26  Score=141.90  Aligned_cols=129  Identities=22%  Similarity=0.216  Sum_probs=101.2

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHcCCC---ccccccCCchHHHHHHHhCCCchHHHHHHHH-------------
Q psy8766           6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN---ILLKDINRRNILHLLVLNGGGHIKEFAEEVA-------------   69 (135)
Q Consensus         6 ~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~-------------   69 (135)
                      .++.+.+|.||||+||..++.+++++|+++|++   ++.+|..|.||||+|+..|+.++++++....             
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            467789999999999999999999999999887   5667889999999999999998888876532             


Q ss_pred             -------------HHHhcCCcchhh----------------h------------------------hhhhhccCCCCCcH
Q psy8766          70 -------------AVFLGEGEASQG----------------I------------------------QNLLNEKDKTGCSP   96 (135)
Q Consensus        70 -------------~~~~~~~~~~~~----------------~------------------------~~~~~~~~~~~~t~   96 (135)
                                   ..++........                .                        ...++.++..|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence                         111111100000                0                        00024567889999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCeeec-CCCCCCcchhcc
Q psy8766          97 LHYASREGHIISLENLINLGACINLK-NNSNESPLHLAA  134 (135)
Q Consensus        97 l~~a~~~~~~~~~~~ll~~g~~~~~~-~~~g~tpl~~a~  134 (135)
                      ||+|+..++.+++++|++++++++.. +..|.||||+|+
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~  200 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV  200 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccc
Confidence            99999999999999999999988865 667999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.7e-26  Score=137.42  Aligned_cols=119  Identities=22%  Similarity=0.264  Sum_probs=73.2

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCc---------------------------------cccccCCch
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI---------------------------------LLKDINRRN   48 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~---------------------------------~~~~~~g~t   48 (135)
                      .+.+++.+|.+|+||||+|+..|+.+++++|++.+...                                 +.+|..|.|
T Consensus        26 ~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~t  105 (223)
T d1uoha_          26 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT  105 (223)
T ss_dssp             CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCc
Confidence            35678899999999999999999887777766655444                                 444555555


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCC
Q psy8766          49 ILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES  128 (135)
Q Consensus        49 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t  128 (135)
                      |||+|+..++.++++++.       +.+..       ++..+..|.||||+++..++.+++++|+..+.+++.+|..|+|
T Consensus       106 pL~~A~~~~~~e~~~~Ll-------~~g~d-------~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~T  171 (223)
T d1uoha_         106 PLHYAASKNRHEIAVMLL-------EGGAN-------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT  171 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHH-------HTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             hhhHHHHcCCHHHHHHHH-------HCCCC-------CCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCc
Confidence            555555555433333322       22222       3445555666666666666666666666666666666666666


Q ss_pred             cchhcc
Q psy8766         129 PLHLAA  134 (135)
Q Consensus       129 pl~~a~  134 (135)
                      ||++|+
T Consensus       172 pL~~Aa  177 (223)
T d1uoha_         172 PLHLAC  177 (223)
T ss_dssp             HHHHHH
T ss_pred             eecccc
Confidence            666554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=145.19  Aligned_cols=120  Identities=27%  Similarity=0.314  Sum_probs=103.0

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .+.+++..+..|.||++.|+..++.+++++|++.|++++..+..+.||||.++..+...+++++..       .+..   
T Consensus       253 ~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~-------~g~~---  322 (408)
T d1n11a_         253 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-------HQAD---  322 (408)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-------TTCC---
T ss_pred             cccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecc-------cccc---
Confidence            356677788888999999999999999999999999998888889999999988887655544433       3333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                          ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|++
T Consensus       323 ----in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~  372 (408)
T d1n11a_         323 ----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR  372 (408)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             ----ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence                78889999999999999999999999999999999999999999999863

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.9e-25  Score=127.12  Aligned_cols=103  Identities=21%  Similarity=0.201  Sum_probs=86.9

Q ss_pred             CCCCcccc------ccCCChHHHHHHHh---CCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHH
Q psy8766           2 TGADLNVL------DKEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF   72 (135)
Q Consensus         2 ~g~~~n~~------~~~g~tpl~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~   72 (135)
                      .|+|++.+      +..|+||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+..|+.++++++..     
T Consensus        28 ~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~-----  102 (154)
T d1dcqa1          28 DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-----  102 (154)
T ss_dssp             TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-----
T ss_pred             cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccc-----
Confidence            35666544      67899999999975   67899999999999999999999999999999998666555543     


Q ss_pred             hcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8766          73 LGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC  118 (135)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~  118 (135)
                        .+..       ++..+..|+||||+|+..++.+++++|++.+..
T Consensus       103 --~gad-------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         103 --GKAS-------IEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             --TTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             --cCcc-------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence              4444       678899999999999999999999999987543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=139.74  Aligned_cols=133  Identities=26%  Similarity=0.258  Sum_probs=100.8

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhc-------
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG-------   74 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~-------   74 (135)
                      +|+|+|.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++++.........       
T Consensus        22 ~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~  101 (408)
T d1n11a_          22 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT  101 (408)
T ss_dssp             TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccc
Confidence            6899999999999999999999999999999999999999999999999999999988877766542110000       


Q ss_pred             -------------------CCc--------------------chhhhhhh------hhccCCCCCcHHHHHHhcCcHHHH
Q psy8766          75 -------------------EGE--------------------ASQGIQNL------LNEKDKTGCSPLHYASREGHIISL  109 (135)
Q Consensus        75 -------------------~~~--------------------~~~~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~  109 (135)
                                         .+.                    ....+..+      ++..+..+.+||+.|+..++.+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~  181 (408)
T d1n11a_         102 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV  181 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH
T ss_pred             hhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHH
Confidence                               000                    00000000      234556777888888888888888


Q ss_pred             HHHHHcCCCeeecCCCCCCcchhcc
Q psy8766         110 ENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus       110 ~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ++|+.+|++++..+..|.||++.+.
T Consensus       182 ~~Ll~~g~~~~~~~~~~~t~l~~~~  206 (408)
T d1n11a_         182 KLLLPRGGSPHSPAWNGYTPLHIAA  206 (408)
T ss_dssp             HHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred             HHHHhcCCcccccCCCCCCcchhhh
Confidence            8888888888888888888877653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=129.38  Aligned_cols=134  Identities=20%  Similarity=0.208  Sum_probs=93.4

Q ss_pred             CCCCcccccc-CCChHHHHHHHhCCHHHHHHHHHcCCCccc---------------------------------------
Q psy8766           2 TGADLNVLDK-EKRSPLLLAASRGGWKTVLTLVRNKANILL---------------------------------------   41 (135)
Q Consensus         2 ~g~~~n~~~~-~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~---------------------------------------   41 (135)
                      +|+|+|.++. .|.||||+|+..|+.+++++|++.+.....                                       
T Consensus        27 ~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (285)
T d1wdya_          27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF  106 (285)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCC
T ss_pred             CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCC
Confidence            5888987754 688999999999999999999876553321                                       


Q ss_pred             -------------------------------------cccCCchHHHHHHHhCCCchHHHHHHHH---------------
Q psy8766          42 -------------------------------------KDINRRNILHLLVLNGGGHIKEFAEEVA---------------   69 (135)
Q Consensus        42 -------------------------------------~~~~g~t~l~~a~~~~~~~~~~~~~~~~---------------   69 (135)
                                                           ....|.||||+|+..++.+++++++...               
T Consensus       107 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~  186 (285)
T d1wdya_         107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  186 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccc
Confidence                                                 1224667777777777666666554310               


Q ss_pred             -HHHhcC-Ccchhhhh-h------hhhccCCCCCcHHHHHHhcCcHHHHHHHHHc-CCCeeecCCCCCCcchhccC
Q psy8766          70 -AVFLGE-GEASQGIQ-N------LLNEKDKTGCSPLHYASREGHIISLENLINL-GACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        70 -~~~~~~-~~~~~~~~-~------~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~tpl~~a~~  135 (135)
                       ...... ......+. .      .++.++..|.||||+|+..++.+++++|++. |++++.+|.+|.||||+|++
T Consensus       187 ~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~  262 (285)
T d1wdya_         187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence             000000 00000010 0      1355678899999999999999999999974 99999999999999999974

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.5e-25  Score=121.11  Aligned_cols=99  Identities=20%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             CCCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCc-hHHHHHHHhCCCchHHHHHHHHHHHhcCCcch
Q psy8766           1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRR-NILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS   79 (135)
Q Consensus         1 ~~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
                      ++|+|+|.++..|.||+|+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+.++++++...       +.. 
T Consensus        24 ~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-------ga~-   94 (125)
T d1bi7b_          24 EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-------GAR-   94 (125)
T ss_dssp             TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-------TCC-
T ss_pred             HcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc-------ccc-
Confidence            369999999999999999765 7999999999999999999998876 699999999987766665543       333 


Q ss_pred             hhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy8766          80 QGIQNLLNEKDKTGCSPLHYASREGHIISLENLIN  114 (135)
Q Consensus        80 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~  114 (135)
                            ++..+..|+||||+|+..|+.+++++|+.
T Consensus        95 ------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          95 ------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                  67889999999999999999999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.8e-23  Score=118.85  Aligned_cols=109  Identities=22%  Similarity=0.280  Sum_probs=88.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcccc------ccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhcc
Q psy8766          16 PLLLAASRGGWKTVLTLVRNKANILLK------DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEK   89 (135)
Q Consensus        16 pl~~a~~~~~~~~~~~Ll~~g~~~~~~------~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (135)
                      .|..|+..+....+..++..|+++...      +..|+||||+|+..+.....    ++...+++.+..       ++.+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~----~iv~~Ll~~gad-------in~~   77 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL----HIVDFLVQNSGN-------LDKQ   77 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTH----HHHHHHHHHCSC-------TTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCH----HHHHHHHHcCCC-------hhhh
Confidence            455788999999999999998887654      67899999999987543322    222333334444       7889


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      +..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++
T Consensus        78 d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  123 (154)
T d1dcqa1          78 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR  123 (154)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             hhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999863

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=8.8e-24  Score=127.05  Aligned_cols=122  Identities=25%  Similarity=0.250  Sum_probs=94.6

Q ss_pred             ChHHHHHHHhCCHHHHHHHHH-cCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHH---------------------
Q psy8766          14 RSPLLLAASRGGWKTVLTLVR-NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV---------------------   71 (135)
Q Consensus        14 ~tpl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~---------------------   71 (135)
                      +||||+||..|+.++++.|++ .+.+++.+|.+|.||||+|+..|+.+++++++.....                     
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            589999999999999999997 4688999999999999999999998888887653211                     


Q ss_pred             --------HhcCCcchhh----------------------hh------hhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8766          72 --------FLGEGEASQG----------------------IQ------NLLNEKDKTGCSPLHYASREGHIISLENLINL  115 (135)
Q Consensus        72 --------~~~~~~~~~~----------------------~~------~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  115 (135)
                              ....+.....                      +.      ......+..|+||||+|+..++.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                    0000000000                      00      00233667899999999999999999999998


Q ss_pred             C-CCeeecCCCCCCcchhccC
Q psy8766         116 G-ACINLKNNSNESPLHLAAR  135 (135)
Q Consensus       116 g-~~~~~~~~~g~tpl~~a~~  135 (135)
                      + .+++.+|..|+||||+|++
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCCchhhhcc
Confidence            6 6889999999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5e-24  Score=118.24  Aligned_cols=100  Identities=18%  Similarity=0.093  Sum_probs=84.4

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +|+|+|.+|.+|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+.+|+.++++++.       +.+..   
T Consensus        23 ~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-------~~ga~---   92 (130)
T d1ycsb1          23 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-------ESGAA---   92 (130)
T ss_dssp             TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-------HTTCC---
T ss_pred             cCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHH-------HcCCC---
Confidence            68999999999999999999999999999999999999999999999999999999866655554       34433   


Q ss_pred             hhhhhhccC-CCCCcHHHHH--HhcCcHHHHHHHHHc
Q psy8766          82 IQNLLNEKD-KTGCSPLHYA--SREGHIISLENLINL  115 (135)
Q Consensus        82 ~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~ll~~  115 (135)
                          ++..+ ..++|+++++  +..|+.+++++|+..
T Consensus        93 ----v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          93 ----VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             ----TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ----cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence                45444 4578887665  577889999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-23  Score=120.02  Aligned_cols=105  Identities=31%  Similarity=0.472  Sum_probs=92.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCC
Q psy8766          15 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC   94 (135)
Q Consensus        15 tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (135)
                      +|||+||..|+.+++++|++.|++++.+|..|.||||+|+ .++.+++++       ++..+..       ++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~-------Ll~~~a~-------~~~~~~~~~   67 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARR-------LLLRGAN-------PDLKDRTGF   67 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHH-------HHHTTCC-------TTCCCTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccc-------ccccccc-------cccccccCc
Confidence            8999999999999999999999999999999999999885 666444443       3344444       677888999


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        95 t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      ++++.++..+....++.++..+.+++..+..|.+|+++|+
T Consensus        68 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~  107 (156)
T d1ihba_          68 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA  107 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999885

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=120.93  Aligned_cols=123  Identities=24%  Similarity=0.268  Sum_probs=88.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHH----cCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc----------
Q psy8766          12 EKRSPLLLAASRGGWKTVLTLVR----NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE----------   77 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~----------   77 (135)
                      +|+||||+||..|+.++++.|++    .|++++.+|..|.||||+|+..|+.+++++++...........          
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            57888888888888888777764    6778888888888888888888877777666542111000000          


Q ss_pred             -------------------c-h--------------------hhhh-------hhhhccCCCCCcHHHHHHhcCcHHHHH
Q psy8766          78 -------------------A-S--------------------QGIQ-------NLLNEKDKTGCSPLHYASREGHIISLE  110 (135)
Q Consensus        78 -------------------~-~--------------------~~~~-------~~~~~~~~~~~t~l~~a~~~~~~~~~~  110 (135)
                                         . .                    ....       .........+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                               0 0                    0000       001224457889999999999999999


Q ss_pred             HHHHcCCCeeecCCCCCCcchhcc
Q psy8766         111 NLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus       111 ~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .+++.|.+++.+|..|.|||++|+
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             hhhhhccccccccccCcchHHHHH
Confidence            999999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=3e-25  Score=141.11  Aligned_cols=114  Identities=15%  Similarity=0.109  Sum_probs=75.1

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccc--cCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcch
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD--INRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS   79 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
                      .|+++|.+|.+|.||||+||..|+.+++++|++.|++++..+  ..|.||||+|+..|+.++++++......       .
T Consensus       115 ~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~-------~  187 (346)
T d2ajaa1         115 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT-------E  187 (346)
T ss_dssp             CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG-------G
T ss_pred             CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc-------c
Confidence            577788888888888888888888888888888888777665  4577888888888876666666543211       0


Q ss_pred             hhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCC
Q psy8766          80 QGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN  126 (135)
Q Consensus        80 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g  126 (135)
                      ..    .+..+..+.||++.|+..|+.+++++|++.|++++..+...
T Consensus       188 ~~----~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~  230 (346)
T d2ajaa1         188 AT----AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE  230 (346)
T ss_dssp             HH----HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCT
T ss_pred             cc----cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHH
Confidence            00    11222334566677777888888888888777665544333

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=7.8e-24  Score=115.62  Aligned_cols=87  Identities=23%  Similarity=0.208  Sum_probs=77.7

Q ss_pred             CCCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchh
Q psy8766           1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQ   80 (135)
Q Consensus         1 ~~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
                      .+|+|+|.++.+|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++++++       +.+..  
T Consensus        23 ~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll-------~~Gad--   93 (118)
T d1myoa_          23 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL-------SKGAD--   93 (118)
T ss_dssp             TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHH-------TTCCC--
T ss_pred             HhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhh-------ccccc--
Confidence            368999999999999999999999999999999999999999999999999999999877666554       44544  


Q ss_pred             hhhhhhhccCCCCCcHHHHHH
Q psy8766          81 GIQNLLNEKDKTGCSPLHYAS  101 (135)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~  101 (135)
                           ++.++..|+||||+|.
T Consensus        94 -----~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          94 -----KTVKGPDGLTALEATD  109 (118)
T ss_dssp             -----SSSSSSSTCCCCCTCS
T ss_pred             -----ceeeCCCCCCHHHHHh
Confidence                 7888999999999873

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=7e-25  Score=139.36  Aligned_cols=117  Identities=16%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHH---HHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLT---LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~---Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      +++.++..|.|||++||.+|+.+++++   |++.|++++.++..|.||||+|+..|+.++++++.+....          
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~----------  151 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT----------  151 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT----------
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----------
Confidence            345667789999999999999887765   6789999999999999999999999997777776653222          


Q ss_pred             hhhhhhc--cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCe---eecCCCCCCcchhccC
Q psy8766          82 IQNLLNE--KDKTGCSPLHYASREGHIISLENLINLGACI---NLKNNSNESPLHLAAR  135 (135)
Q Consensus        82 ~~~~~~~--~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~---~~~~~~g~tpl~~a~~  135 (135)
                          ++.  .+..|+||||+|+..|+.+++++|++.|++.   +..+..+.||++.|++
T Consensus       152 ----~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~  206 (346)
T d2ajaa1         152 ----EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  206 (346)
T ss_dssp             ----THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             ----ccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh
Confidence                222  3346889999999999999999999998765   3344556788887763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=110.68  Aligned_cols=99  Identities=28%  Similarity=0.321  Sum_probs=88.5

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      ++.++|..+..|.+|++.++..++.+++++++++|++++.+|..|.||||+|+..|+.++++++..        +..   
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--------~~~---  125 (156)
T d1bd8a_          57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--------ESD---  125 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT--------TSC---
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccccc--------ccc---
Confidence            578999999999999999999999999999999999999999999999999999998665554432        333   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINL  115 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  115 (135)
                          ++.++..|+||||+|+..|+.+++++|+++
T Consensus       126 ----~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         126 ----LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             ----TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ----ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                677899999999999999999999999976

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=3e-23  Score=127.67  Aligned_cols=113  Identities=25%  Similarity=0.290  Sum_probs=93.9

Q ss_pred             ChHHHHHH-HhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHH-HHHhcCCcchhhhhhhhhccCC
Q psy8766          14 RSPLLLAA-SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA-AVFLGEGEASQGIQNLLNEKDK   91 (135)
Q Consensus        14 ~tpl~~a~-~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (135)
                      +||||+++ ..|+.++++.|.+.+++... +..|+||||+|+..|+.++++.+.... ..++..|..       ++.++.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-------vn~~d~   72 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-------VNAMDC   72 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-------TTCCCT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-------ccccCC
Confidence            47888553 35677777777777777644 346999999999999999998887654 444566666       788999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhcc
Q psy8766          92 TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA  134 (135)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~  134 (135)
                      .|+||||+|+..|+.+++++|+++|++++.++..|.||+++|+
T Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~  115 (277)
T d2fo1e1          73 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA  115 (277)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH
T ss_pred             CCCeeeccccccccccccccccccccccccccccccccccchh
Confidence            9999999999999999999999999999999999999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-21  Score=118.64  Aligned_cols=110  Identities=22%  Similarity=0.140  Sum_probs=84.5

Q ss_pred             CCCCccccccCCChHHHHHHHhC----CHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCc
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRG----GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE   77 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~----~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (135)
                      .|++++..+..|.++++.+...+    ..+++++|+++|++++.++..|.||||+|+..++.+++++++.      ..+.
T Consensus       171 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~------~~g~  244 (285)
T d1wdya_         171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE------QEHI  244 (285)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH------SSSC
T ss_pred             cCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHH------cCCC
Confidence            36667777777766665543332    2356777777788888888999999999999998655444443      2233


Q ss_pred             chhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCC
Q psy8766          78 ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNN  124 (135)
Q Consensus        78 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~  124 (135)
                      .       ++.++..|.||||+|++.++.+++++|+++|++++.+|.
T Consensus       245 d-------in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         245 E-------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             C-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             C-------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            3       788899999999999999999999999999999999873

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.86  E-value=5.4e-22  Score=122.94  Aligned_cols=111  Identities=28%  Similarity=0.417  Sum_probs=97.6

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccC
Q psy8766          11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKD   90 (135)
Q Consensus        11 ~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (135)
                      .++.|||+.||..|+.+++++|++.|++++.+|..|.||||+|+..|+.++++++..       .+..       ....+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~-------~~~~-------~~~~~  103 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-------NGAN-------INQPD  103 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-------TTCC-------TTCCC
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecc-------cccc-------ccccc
Confidence            346699999999999999999999999999999999999999999999777666554       3322       45566


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecCCCCCCcchhccC
Q psy8766          91 KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR  135 (135)
Q Consensus        91 ~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~  135 (135)
                      ..+.+||+.++..++.++++.|+++|+..+..+..+.+|+++|+.
T Consensus       104 ~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~  148 (291)
T d1s70b_         104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE  148 (291)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS
T ss_pred             ccccccccccccccccchhhcccccCcccccccccCccccccccc
Confidence            788999999999999999999999999999999999999998863

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=2.7e-21  Score=114.59  Aligned_cols=97  Identities=22%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHHHHhcCCcchhh
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQG   81 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
                      .|.+++.++..|.|||++++..+..++++.+++.+.+++.+|..|.||||+|+..|+.++++++++       .+..   
T Consensus       112 ~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-------~gad---  181 (209)
T d1ot8a_         112 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD-------NFAN---  181 (209)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-------TTCC---
T ss_pred             hcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHH-------CCCC---
Confidence            478899999999999999999999999999999999999999999999999999998776666554       3443   


Q ss_pred             hhhhhhccCCCCCcHHHHHHhcCcHHHHHHH
Q psy8766          82 IQNLLNEKDKTGCSPLHYASREGHIISLENL  112 (135)
Q Consensus        82 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  112 (135)
                          ++..+..|+||||+|+.+|+.+++++|
T Consensus       182 ----~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         182 ----REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ----CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence                677889999999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.7e-20  Score=106.23  Aligned_cols=96  Identities=24%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             CCCCccccccCCChHHHHHHHhCCHHHHHHHH---------------------------------HcCCCccccccCCch
Q psy8766           2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLV---------------------------------RNKANILLKDINRRN   48 (135)
Q Consensus         2 ~g~~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll---------------------------------~~g~~~~~~~~~g~t   48 (135)
                      +|++++ .|..|.||||+|+..++.++++.++                                 ..+++++.++..|.|
T Consensus        24 ~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T  102 (153)
T d1awcb_          24 NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT  102 (153)
T ss_dssp             HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             cCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCch
Confidence            467776 5788889999888887666555544                                 455677778999999


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHH
Q psy8766          49 ILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENL  112 (135)
Q Consensus        49 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  112 (135)
                      |||+|+..|+.++++++.       +.+..       ++..+..|.||||+|+..|+.+++++|
T Consensus       103 ~L~~A~~~g~~~iv~~ll-------~~gad-------~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         103 ALHWATEHNHQEVVELLI-------KYGAD-------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHH-------HTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhhhhcchhheeeecc-------ccccC-------CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999866555443       44444       778899999999999999999999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-20  Score=112.24  Aligned_cols=123  Identities=24%  Similarity=0.272  Sum_probs=84.6

Q ss_pred             CCChHHHHHHHhCCHH----HHHHHHHcCCCccccccCCchHHHHHHHhCCCchHHHHHHHHH-----------------
Q psy8766          12 EKRSPLLLAASRGGWK----TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA-----------------   70 (135)
Q Consensus        12 ~g~tpl~~a~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~-----------------   70 (135)
                      +|.||||+|+..|+.+    +++++...|++++.+|..|+||||+|+..++.+++.++.....                 
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            5999999999999864    4556667899999999999999999999998666555433111                 


Q ss_pred             ---------HHhcCCcchhhhhhhhhccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCeeecC-CCCCCcchhccC
Q psy8766          71 ---------VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN-NSNESPLHLAAR  135 (135)
Q Consensus        71 ---------~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~~  135 (135)
                               .++....... ...........|.||+|.|+..++.+++++|+..|+.++..+ ..|.||||+|++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~  154 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPH-LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD  154 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTS-SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             ccccccccchhhhhccccc-ccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccc
Confidence                     0000000000 000012234457899999999999999999999999988765 569999999863

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.6e-15  Score=93.33  Aligned_cols=50  Identities=20%  Similarity=0.147  Sum_probs=47.9

Q ss_pred             CccccccCCChHHHHHHHhCCHHHHHHHHHcCCCccccccCCchHHHHHH
Q psy8766           5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV   54 (135)
Q Consensus         5 ~~n~~~~~g~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~   54 (135)
                      .+|.+|.+|+||||+|++.|+.+++++|++.|++++.+|..|.|||++|+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            37899999999999999999999999999999999999999999999985