Psyllid ID: psy8791

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700------
Protein Sequence
MKSLKLCPLKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQEKLKT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccccEEEEcccccEEEEccccEEccccccccccccccccccccccEEEEcccEEEEccccEEEcccccEEEccEEEEEcccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHccccEEEccccEEEEEccccEEEEEcccccEEEEEEEEEEccccccHHHHHcccccccccEEEcccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEcccEEEEEEEEcccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccccccEEcccccccHHHHHHHHHHHHHcccccEEEEcccccccccccEEEEEcccccccccccccccccccccEEEccccEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccEEEEccccEEEcccccEEEEcEEEEEEcccccccccccccccccccccEEcccccHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHcccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccccEEEEEcccccEccccEEEEccccccHHHccccHHHHccccccHHHHHHHcccccccEEEEccccEEEEEEEEEEcccEEcHHHcccHHHHHcccccccccccccccccccHHHHHccccccccHHHHHccccccccccccHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccEEEEEccccHHcccHHHHHHHHHHHHHcccEEEEccEEEEEcccccEEEEEEccccEEEEEEEEEEccccccHHHHHccccccccccEEcccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccEEEEEEEccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHEEEEEcccHHHHHHHHHHHHHcccccEEEEcccccccccccEEEEccccccHHHHcccHHHccccccHHHHHHHHcccccccEEEEccEEEEccccccEccccEEEEccccccHHHccccHHHHccccccHHHHHHHEccccccEEEEccccEEEEEEEEEEcccEEcHHHcccHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mkslklcplksynllsssfstsplsssshsckLLVVGGGAAGCSMAAKFTsklgkgqvsiveptddhyyqpmftligggmkklsdsrrpmksvlpsgatwvkdkivsfdpennrvrtqagseiSYEYMIVASGIQMyydrvkgpsaLINALGhcdlvrsfvtfplffprrtldflrrpsglqealdqpdsgvstnyspqYVEKTLRNLqhfqsgpvlytfpatpikcggapmkaVLIGDEYLRKHkkrdaakltyctgmgvlfpspfyaekIHDILIgrgvdvhkgKALVEIDLANKeavfksedkterlpyaimhvtppmgpvpelatsrlvdqsgyvnvdkaTLQHVKYSNVFaigdcsnlptsktaAAVAGQCKVVYDNLSAVMknralpheyngytscplvtgyskcvmaefdytlkpletfpvdqskERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTsrlgkgqvsiveptddhyyqpmftligggmkklsdsrrpmksvlpsgatwvkdkivsfdssYTFTILILHSiveptddhyyqpmftligggmkklsdsrrpmksvlpsgatwvkdkivsfdpennrvrtqagseiSYEYMIVASGIQMYYDrvkggttsledrgkmrgvsdgfstvTWEQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQEKLKT
Flexible Loop (DISEMBL)
mkslklcpLKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKsvlpsgatwvkdkivsfdpennrvrtqagseisyEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLqealdqpdsgvsTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDlankeavfksedkterlPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKsvlpsgatwvkdkIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKsvlpsgatwvkdkivsfdpennrvrtqagseisyEYMIVASGIQMYYDRVKGGttsledrgkmrgvsdgfstvtweqkhkqyqlvspeirAKAYDLTKRKMKkeaqwirfqeklkt
Low Complexity Region (SEG)
MKSLKLCPLKsynllsssfstsplsssshsckllVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQEKLKT
Disordered region (IsUnstruct)
******************************CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGG*****************GATWVKDKIVSFDP***RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLR**********************QYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM*************LPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM****************GATWVKDKIVSFDP***RVRTQAGSEISYEYMIVASGIQMYYDRVKGGTT**********VSDGFSTVTWEQKHKQYQLVSPEIRAKAYDL**********WI********
Disordered Region (DISOPRED)
*******************************KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQEK***
Disordered Region (DISEMBL)
MKSLKLCPLKSYNLLSS************SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK************LPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMK************LPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK************LPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQEKLKT
Disordered Region (DISPRO)
****************************HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSLKLCPLKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQEKLKT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	706	2.2.26 [Sep-21-2011]
Q9Y6N5	450	Sulfide:quinone oxidoredu	yes	N/A	0.579	0.908	0.443	1e-111
Q9R112	450	Sulfide:quinone oxidoredu	yes	N/A	0.587	0.922	0.444	1e-109
Q54DK1	452	Sulfide:quinone oxidoredu	yes	N/A	0.553	0.865	0.420	2e-89
O94284	459	Sulfide:quinone oxidoredu	yes	N/A	0.562	0.864	0.351	3e-75
Q06530	431	Sulfide dehydrogenase [fl	yes	N/A	0.403	0.661	0.230	1e-08
Q55CD9	451	Probable NADH dehydrogena	no	N/A	0.461	0.722	0.205	0.0001

>sp|Q9Y6N5|SQRD_HUMAN Sulfide:quinone oxidoreductase, mitochondrial OS=Homo sapiens GN=SQRDL PE=1 SV=1

 Score =  403 bits (1036), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/455 (44%), Positives = 287/455 (63%), Gaps = 46/455 (10%)

Query: 25  SSSSHSCK----LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
           + +SH+ +    +LV+GGG+ G +MAA+   K+G   V+IVEP++ H+YQP++TL+G G 
Sbjct: 34  TGASHAARNHYEVLVLGGGSGGITMAARMKRKVGAENVAIVEPSERHFYQPIWTLVGAGA 93

Query: 81  KKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDR 140
           K+LS S RP  SV+PSG  W+K ++   +P+ N + T    +ISY Y+I+A GIQ+ Y++
Sbjct: 94  KQLSSSGRPTASVIPSGVEWIKARVTELNPDKNCIHTDDDEKISYRYLIIALGIQLDYEK 153

Query: 141 VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQY 200
           +KG                                     L E    P  G  +NYS + 
Sbjct: 154 IKG-------------------------------------LPEGFAHPKIG--SNYSVKT 174

Query: 201 VEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG 260
           VEKT + LQ F+ G  ++TFP TP+KC GAP K + + + Y RK  KR  A + + T +G
Sbjct: 175 VEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLG 234

Query: 261 VLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPYAIMHV 317
            +F    YA+ + +I+  R + V+  K L+E+    +EAVF++ DK   T+ + Y ++HV
Sbjct: 235 AIFGVKKYADALQEIIQERNLTVNYKKNLIEVRADKQEAVFENLDKPGETQVISYEMLHV 294

Query: 318 TPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK 377
           TPPM P   L TS + D +G+V+VDK TLQH +Y NVF IGDC+NLPTSKTAAAVA Q  
Sbjct: 295 TPPMSPPDVLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKTAAAVAAQSG 354

Query: 378 VVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLM 437
           ++   +S +MKN+    +Y+GYTSCPLVTGY++ ++AEFDY  +PLETFP DQSKER  M
Sbjct: 355 ILDRTISVIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYKAEPLETFPFDQSKERLSM 414

Query: 438 FQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
           + MK  +MPFLYWN+MLRGYW GP   R++FHLG+
Sbjct: 415 YLMKADLMPFLYWNMMLRGYWGGPAFLRKLFHLGM 449

Catalyzes the oxidation of hydrogen sulfide, with the help of a quinone.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q9R112|SQRD_MOUSE Sulfide:quinone oxidoreductase, mitochondrial OS=Mus musculus GN=Sqrdl PE=2 SV=3

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/457 (44%), Positives = 284/457 (62%), Gaps = 42/457 (9%)

Query: 19  FSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG 78
             T    ++ +  ++LV+GGGA G +MA +   ++G   V+IVEP++ H+YQP++TL+G 
Sbjct: 32  LHTGACCTAKNHYEVLVLGGGAGGITMATRMKRRVGAENVAIVEPSERHFYQPIWTLVGA 91

Query: 79  GMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYY 138
           G K+LS S R   SV+PSG  W++D++   +P+ N +RT +G EISY Y+I+A GIQ+ Y
Sbjct: 92  GAKELSLSVRSTLSVIPSGVQWIQDRVAELNPDENCIRTDSGKEISYRYLIIALGIQLDY 151

Query: 139 DRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSP 198
           +++KG                                     L E    P  G  +NYS 
Sbjct: 152 EKIKG-------------------------------------LPEGFAYPKIG--SNYSV 172

Query: 199 QYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTG 258
           + VEKT + LQ F+ G  L+TFP TP+KC GAP K + + + Y RK  KR  A + + T 
Sbjct: 173 KTVEKTWKALQGFKEGNALFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRPKANIIFNTA 232

Query: 259 MGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPYAIM 315
           +G +F    YA+ + +I+  R V V+    L+E+    +EAVF+  DK   T  +PY ++
Sbjct: 233 LGTIFGVKKYADALQEIIRERDVSVNYKHNLIEVRPDKQEAVFEILDKPGETHVIPYEML 292

Query: 316 HVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQ 375
           HVTPPM     L  S + D +G+V+VDK TLQH KY NVF IGDC+NLPTSKTAAAVA Q
Sbjct: 293 HVTPPMSAPDVLKRSPVADSAGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKTAAAVAAQ 352

Query: 376 CKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERS 435
             ++   +  +MKN+    +Y+GYTSCPLVTGY++ ++AEFDYT +PLETFP DQSKER 
Sbjct: 353 SGILDRTMCLIMKNQRPIKKYDGYTSCPLVTGYNRVILAEFDYTAQPLETFPFDQSKERI 412

Query: 436 LMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
            M+ MK  +MPFLYWN+MLRGYW GP   R++FHLG+
Sbjct: 413 TMYLMKADMMPFLYWNMMLRGYWGGPAFLRKLFHLGM 449

Catalyzes the oxidation of hydrogen sulfide, with the help of a quinone.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q54DK1|SQRD_DICDI Sulfide:quinone oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=sqrdl PE=3 SV=1

 Score =  330 bits (847), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/433 (42%), Positives = 255/433 (58%), Gaps = 42/433 (9%)

Query: 31  CKLLVVGGGAAGCSMAAKFTSKL-GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP 89
            K+++VGGGA G S+A++   K   KG + IVEP++ HYYQP++TL+GGG+    DS + 
Sbjct: 45  TKIVIVGGGAGGLSVASQLEHKFKNKGDIVIVEPSEKHYYQPLWTLVGGGIFSRKDSEKD 104

Query: 90  MKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALIN 149
            K  +P GATWVKD +  F PE N V T+ G EI Y+Y++V++G+++Y+DRVKG      
Sbjct: 105 EKDFIPKGATWVKDSVTVFKPEENIVLTKDGKEIDYDYLVVSTGLELYWDRVKG------ 158

Query: 150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQ 209
                                          L+E L +  +GV++NYS    EKT   ++
Sbjct: 159 -------------------------------LKENLGK--NGVTSNYSYDSCEKTFEFIK 185

Query: 210 HFQSGPV-LYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFY 268
             + G V ++T P T +KCGGAP K + + D+YLRKH  RD  +L + +    +FP   Y
Sbjct: 186 SLKPGNVAIFTVPTTGVKCGGAPQKILWLCDDYLRKHGIRDKVRLDFNSAGASMFPVKKY 245

Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA 328
           +E +  +   RGV+ +    LVEI   +KEAVF++    + + Y ++HV PPMGP   + 
Sbjct: 246 SEVLDKMAKERGVNQNFAHNLVEIKGDSKEAVFETPQGNKTVKYDMIHVVPPMGPHSVIK 305

Query: 329 TSRLVD-QSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVM 387
            S L D  +G+VNVDK TLQHVKY NVF++GD SNLPTSKTAAA+  Q  ++  NL    
Sbjct: 306 NSPLADPATGFVNVDKGTLQHVKYDNVFSLGDTSNLPTSKTAAAITSQAPILVGNLINHK 365

Query: 388 KNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPF 447
               L H+Y+GYTSCP+ T YSK ++AEF Y  +  E+ P DQSKE      +KK V P 
Sbjct: 366 LGLPLNHKYDGYTSCPITTSYSKIILAEFKYGFEVDESLPFDQSKESYFPMFLKKYVFPT 425

Query: 448 LYWNLMLRGYWNG 460
            YW  ML+G W G
Sbjct: 426 AYWEGMLKGRWFG 438

Catalyzes the oxidation of hydrogen sulfide, with the help of a quinone.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O94284|HMT2_SCHPO Sulfide:quinone oxidoreductase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hmt2 PE=3 SV=1

 Score =  283 bits (724), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 251/461 (54%), Gaps = 64/461 (13%)

Query: 26  SSSHSCKLLVVGGGAAGCSMAAKFTSKLGK---------------GQVSIVEPTDDHYYQ 70
           +S+H  K+LVVGGG+AG S+A +  +K  K               G++ IV+    HYYQ
Sbjct: 25  ASTHH-KVLVVGGGSAGISVAHQIYNKFSKYRFANDQGKDTSLKPGEIGIVDGAKYHYYQ 83

Query: 71  PMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV-SFDPENNRVRTQAGSEISYEYMI 129
           P +TL G G+  ++ +RR + S++P+    +  + V S  P  N++ TQ+G EISY+Y++
Sbjct: 84  PGWTLTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVTQSGQEISYDYLV 143

Query: 130 VASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPD 189
           +A+GI   + R+KG                                     L EALD P+
Sbjct: 144 MAAGIYTDFGRIKG-------------------------------------LTEALDDPN 166

Query: 190 SGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRD 249
           + V T YS +Y +     ++  +SG  ++T P+  +KC GAP K + + ++Y R+HK R 
Sbjct: 167 TPVVTIYSEKYADAVYPWIEKTKSGNAIFTQPSGVLKCAGAPQKIMWMAEDYWRRHKVRS 226

Query: 250 AAKLTYCTGMGVLFPSPFYAEKI--HDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT 307
              +++ TGM  LF    Y++ +   +  + R V ++    LVE+  + ++AVFK+ +  
Sbjct: 227 NIDVSFYTGMPTLFSVKRYSDALLRQNEQLHRNVKINYKDELVEVKGSERKAVFKNLNDG 286

Query: 308 ERL--PYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT 365
                P+ ++H  P M     +A S L D+SG+V VD++T Q  K+ NVFAIGDCS LPT
Sbjct: 287 SLFERPFDLLHAVPSMRSHEFIAKSDLADKSGFVAVDQSTTQSTKFPNVFAIGDCSGLPT 346

Query: 366 SKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLET 425
           SKT AA+  Q  V+  NL + +  + L   YNGYTSCPL+TGY K ++AEF Y  +P E+
Sbjct: 347 SKTYAAITAQAPVMVHNLWSFVNGKNLTASYNGYTSCPLLTGYGKLILAEFLYKQEPKES 406

Query: 426 FP-----VDQSKERSLMFQMKKQVMPFLYWNLMLR-GYWNG 460
           F      +DQ+  R + + +KK   PF+YWN  +R G W G
Sbjct: 407 FGRFSRFLDQTVPRRMFYHLKKDFFPFVYWNFAVRNGKWYG 447

Catalyzes the oxidation of hydrogen sulfide, with the help of a quinone.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q06530|DHSU_ALLVD Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) GN=fccB PE=1 SV=3

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 137/347 (39%), Gaps = 62/347 (17%)

Query: 57  QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR 116
           +V+++EP  D+Y   +   + GG +KL   +     +   G   V D     DP+   V+
Sbjct: 59  EVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVK 118

Query: 117 TQAGSEISYEYMIVASGIQMYYDRVKGPSALINA-LGHCDLVRSFVTFPLFFPRRTLDFL 175
           T  G+E  Y+  +VA GI++ YD+++G S    A L H                      
Sbjct: 119 TAGGAEFGYDRCVVAPGIELIYDKIEGYSEEAAAKLPHA--------------------- 157

Query: 176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAV 235
              +G Q A+               + K L ++     G V+   PA P +C   P +  
Sbjct: 158 -WKAGEQTAI---------------LRKQLEDMA--DGGTVVIAPPAAPFRCPPGPYERA 199

Query: 236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRG-----VDVHKG--KA 288
                YL+ HK +    +   +     F       K  + L G G     ++ H G   A
Sbjct: 200 SQVAYYLKAHKPKSKVIILDSSQT---FSKQSQFSKGWERLYGFGTENAMIEWHPGPDSA 256

Query: 289 LVEIDLANK--EAVFKSEDKTERLPYAIMHVTPPM--GPVPELATSRLVDQSGYVNVDKA 344
           +V++D      E  F  E K +     ++++ PP   G + ++A   L + +G+  VD  
Sbjct: 257 VVKVDGGEMMVETAFGDEFKAD-----VINLIPPQRAGKIAQIAG--LTNDAGWCPVDIK 309

Query: 345 TLQHVKYSNVFAIGD-CSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR 390
           T +   +  +  IGD C   P  K+  +   Q KV    + A++K  
Sbjct: 310 TFESSIHKGIHVIGDACIANPMPKSGYSANSQGKVAAAAVVALLKGE 356

Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (taxid: 572477)

EC: 1

EC: .

EC: 8

EC: .

EC: 2

EC: .

EC: 3

>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/384 (20%), Positives = 146/384 (38%), Gaps = 58/384 (15%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           KL+++G G    S      S   K  ++++ P +   + P+ T    G  +      P++
Sbjct: 41  KLIILGCGWGSYSFLKNLNSI--KYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVR 98

Query: 92  SVLPSGA-TWVKDKIVSFDPENNRVRTQAGS------EISYEYMIVASGIQMYYDRVKG- 143
           +        +++  + S +PENN V  ++        E+ Y+ +++  G +     +KG 
Sbjct: 99  TTRDINEFKYIQASVTSINPENNSVLVKSTFHNEKPFEMKYDKLVIGVGSRNNTFGIKGV 158

Query: 144 --PSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYV 201
              +  +  L H   +R  +     F R +L     P    E  ++  S V        +
Sbjct: 159 EENANFLKELHHAREIRQKII--ECFERASL-----PDVSTEERERLLSFVIVGGGATGI 211

Query: 202 EKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV 261
           E T   L  F S  +   FP  P+                       +  K+      G 
Sbjct: 212 EFT-SELNDFFSEDLSRLFPFVPV-----------------------NEVKIILLEASGK 247

Query: 262 LFPSPFYAEKIHDILIG---RGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVT 318
           +  S F  + +   LI     G+DV    ++ E+    K+ V    D  +R+PY ++  +
Sbjct: 248 IL-STFDQKLVKKALINFRNSGIDVRTHSSVKEVL---KDYVIL--DNGDRIPYGLLVWS 301

Query: 319 PPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNL------PTSKTAAAV 372
             +G  P +  S     S    +    L+   YSNVF+ GDC+N+      PT++ A+  
Sbjct: 302 TGIGQHPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCANVENKNYPPTAQVASQS 361

Query: 373 AGQCKVVYDNLSAVMKNRALPHEY 396
           A      ++NL  +  N   P  +
Sbjct: 362 AVYLAKEFNNLEKLNPNPPKPFAF 385

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	706
321464504	439	hypothetical protein DAPPUDRAFT_306714 [	0.610	0.981	0.491	1e-121
347969340	443	AGAP003142-PA [Anopheles gambiae str. PE	0.594	0.948	0.490	1e-118
157126710	445	sulfide quinone reductase [Aedes aegypti	0.616	0.977	0.480	1e-116
170036146	444	sulfide quinone reductase [Culex quinque	0.613	0.975	0.469	1e-115
260789882	448	hypothetical protein BRAFLDRAFT_81609 [B	0.586	0.924	0.459	1e-115
224062533	450	PREDICTED: sulfide:quinone oxidoreductas	0.592	0.928	0.452	1e-113
91078028	435	PREDICTED: similar to sulfide quinone re	0.586	0.951	0.469	1e-112
402874208	450	PREDICTED: sulfide:quinone oxidoreductas	0.579	0.908	0.443	1e-111
291403088	450	PREDICTED: sulfide dehydrogenase like [O	0.569	0.893	0.463	1e-111
410961333	450	PREDICTED: sulfide:quinone oxidoreductas	0.579	0.908	0.449	1e-111

>gi|321464504|gb|EFX75511.1| hypothetical protein DAPPUDRAFT_306714 [Daphnia pulex]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 47/478 (9%)

Query: 1   MKSLKLCPLKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSI 60
           M +L  C +       S FST+     S S KL+VVGGGA GCS+AAKF S L K  V+I
Sbjct: 1   MATLLKCKMVVLGCNPSFFSTTS-QRLSQSFKLVVVGGGAGGCSVAAKFASVLPKNNVAI 59

Query: 61  VEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAG 120
           +EP+D HYYQPM+T+IGGGMKKL  S RPM  VLP  A W+K++   F PE NR+ T +G
Sbjct: 60  IEPSDTHYYQPMWTMIGGGMKKLEQSGRPMSQVLPKNAHWIKERASQFFPEENRLVTASG 119

Query: 121 SEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSG 180
            EI YEY++VA G+Q+ Y+++KG                                     
Sbjct: 120 EEIKYEYLVVAMGLQLDYNKIKG------------------------------------- 142

Query: 181 LQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDE 240
           L EA + P  GV +NYSP+YVEKTL +L++F+ G  ++TFP TPIKC GAP KA+ I +E
Sbjct: 143 LPEAFNTP--GVCSNYSPKYVEKTLESLKNFKGGNAIFTFPNTPIKCAGAPQKAMYISEE 200

Query: 241 YLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV 300
           YLRKH KRD A + + T +GVLF    YA+ +  ++  R + V+    L+E+    KEAV
Sbjct: 201 YLRKHNKRDKANVIFNTSLGVLFGVKKYADALEKVVRERNIAVNFRHELLEVKPDTKEAV 260

Query: 301 FKSED----KTERLPYAIMHVTPPMGPVPEL--ATSRLVDQSGYVNVDKATLQHVKYSNV 354
           F+  D     T+   Y ++HVTPPM   P+L  A  +L +++GY+ VDK+TLQH+++ N+
Sbjct: 261 FRLLDDPAGNTKTFKYEMLHVTPPMS-APDLLKANKKLTNEAGYLEVDKSTLQHIRFPNI 319

Query: 355 FAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMA 414
           F IGDC+NLPTSKTAAA+AGQ K+VYDNL   M+ +    +Y+GYTSCPLVTGYSKC++A
Sbjct: 320 FGIGDCTNLPTSKTAAAIAGQNKIVYDNLKLQMEGKKPSQKYDGYTSCPLVTGYSKCILA 379

Query: 415 EFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
           EFDY  +PLET P++Q+KER+  F MKK++MP LYW LML G+WNGPGV R++ HLG 
Sbjct: 380 EFDYDGQPLETLPINQAKERNTSFFMKKEIMPVLYWKLMLNGWWNGPGVIRKILHLGT 437

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969340|ref|XP_312834.5| AGAP003142-PA [Anopheles gambiae str. PEST] gi|333468479|gb|EAA08424.5| AGAP003142-PA [Anopheles gambiae str. PEST]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/463 (49%), Positives = 309/463 (66%), Gaps = 43/463 (9%)

Query: 13  NLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM 72
           ++ +  F+TS + + +H CKLLVVGGGA GCS+AAK ++KLG G+V ++EP D+HYYQPM
Sbjct: 17  SIAARGFATSGILNENHKCKLLVVGGGAGGCSVAAKASNKLGAGKVIVLEPADNHYYQPM 76

Query: 73  FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVAS 132
           FTLIGGG+KKL DS RPMKSVLP+ ATW+KD    F+PE+N V T  G  I YEY++VA 
Sbjct: 77  FTLIGGGIKKLEDSFRPMKSVLPALATWIKDSAAKFEPESNTVHTSGGDTIEYEYLLVAV 136

Query: 133 GIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGV 192
           G+Q+ YD++                                      GL EAL  P+  V
Sbjct: 137 GLQLNYDKI-------------------------------------PGLLEALSIPNGKV 159

Query: 193 STNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAK 252
            +NYSP+YV++T + L++F++G  ++TFP +P+KC GAP K + I + YLRK +KR  A+
Sbjct: 160 CSNYSPKYVDRTYQALKNFRTGNAVFTFPNSPVKCPGAPQKVLYIAEHYLRKSRKRKNAQ 219

Query: 253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTER--- 309
           L Y T + VLF    YA+ + +I+  R ++V+    LVE+     EAVF++ DK +    
Sbjct: 220 LHYNTSLPVLFGVKHYADALWEIVKKRDINVNLRTNLVEVKPGTDEAVFENLDKPDERFT 279

Query: 310 LPYAIMHVTPPMGPVPEL--ATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK 367
           + Y ++HVTPPMG  P++  A   LV + G+V+V+K TLQH K+SNVFAIGDCS+ P SK
Sbjct: 280 VKYELLHVTPPMG-APDVLKACKSLVTEVGFVDVNKDTLQHQKFSNVFAIGDCSSSPNSK 338

Query: 368 TAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFP 427
           TAA+VA Q +VVY NL AVM+ R     ++GY SCPLVTGY+ C++AEFDY+L PLETFP
Sbjct: 339 TAASVAAQSQVVYKNLMAVMEGRTPNRVFDGYASCPLVTGYNTCMLAEFDYSLTPLETFP 398

Query: 428 VDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL 470
           +DQ KER  M+ MKK  MP LYW+L+L G WNGPG+ R++ H 
Sbjct: 399 LDQRKERFTMYLMKKDFMPPLYWHLLLNGLWNGPGLMRKLMHF 441

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126710|ref|XP_001654715.1| sulfide quinone reductase [Aedes aegypti] gi|108882501|gb|EAT46726.1| AAEL002107-PA [Aedes aegypti]

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/481 (48%), Positives = 306/481 (63%), Gaps = 46/481 (9%)

Query: 1   MKSLKLCPLKSYNLLSS-----SFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGK 55
           M SL++C +       S     SF+ S + +  H CK+LVVGGGA GC++AAK +SKLG+
Sbjct: 1   MYSLRVCNILRNGTSKSEVAIRSFAISSVHNDYHKCKVLVVGGGAGGCAVAAKLSSKLGE 60

Query: 56  GQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRV 115
           G+V+I+EP D HYYQPMFTLIGGG+K L DS RPM  VLP+ A WVKD    F+PENN V
Sbjct: 61  GKVTILEPADKHYYQPMFTLIGGGIKTLKDSYRPMSKVLPTLAKWVKDSAAKFEPENNTV 120

Query: 116 RTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFL 175
            T  G +I YE+++VA+G+Q+ YD++                                  
Sbjct: 121 YTANGDKIQYEFLLVATGLQLNYDKI---------------------------------- 146

Query: 176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAV 235
               GL +AL  P   V +NYSP+YV++T + LQ F+SG  ++T+P +P+KC GAP K +
Sbjct: 147 ---PGLVDALSIPKGKVCSNYSPKYVDRTYQALQAFKSGNAIFTYPNSPVKCPGAPQKIL 203

Query: 236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLA 295
            IG+ YLRK KKR  A + Y T + V+F    YA+++  I+  R + V+    L+E+   
Sbjct: 204 YIGEHYLRKSKKRQNANVIYNTSLPVIFGVKHYADQLWKIVEKRDIKVNLRTNLIEVIPD 263

Query: 296 NKEAVFKSEDKTERL---PYAIMHVTPPMGPVPELATSR-LVDQSGYVNVDKATLQHVKY 351
             +AVF++ DK E      Y  +HVTPPMG    LA  + LV ++G+V+VDK TLQHV+Y
Sbjct: 264 KNQAVFQNLDKPEETFTTDYEFLHVTPPMGAPDSLAACKNLVTETGFVDVDKDTLQHVRY 323

Query: 352 SNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKC 411
            NVFAIGDCS  P SKTAA+VA Q +VVY N+ AVM        +NGY SCPLVTGY+ C
Sbjct: 324 DNVFAIGDCSASPNSKTAASVAAQSQVVYKNMIAVMNGVKPSQVFNGYASCPLVTGYNTC 383

Query: 412 VMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLG 471
           +MAEFDY+L PLETFP+DQSKER  MF MKK +MP LYW+L+L G WNGPG  R++ H  
Sbjct: 384 IMAEFDYSLTPLETFPIDQSKERISMFYMKKDLMPPLYWHLLLNGLWNGPGFARKLMHFS 443

Query: 472 V 472
           +
Sbjct: 444 L 444

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036146|ref|XP_001845926.1| sulfide quinone reductase [Culex quinquefasciatus] gi|167878724|gb|EDS42107.1| sulfide quinone reductase [Culex quinquefasciatus]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/479 (46%), Positives = 305/479 (63%), Gaps = 46/479 (9%)

Query: 1   MKSLKLC-----PLKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGK 55
           M SL++C      L   ++L   F+TS + + +H CK+LVVGGGA GCS+AAK ++KLG+
Sbjct: 1   MNSLRVCNVIRSSLSKSDILVRGFATSNVVNENHKCKVLVVGGGAGGCSVAAKLSNKLGE 60

Query: 56  GQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRV 115
           G+V I+EP D HYYQPMFTLIGGG+K L+DS RPM  VLP+ A W+KD  V F+PENN V
Sbjct: 61  GKVIILEPADKHYYQPMFTLIGGGIKTLNDSYRPMAKVLPALAKWLKDSAVKFEPENNAV 120

Query: 116 RTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFL 175
            T  G +I Y++++VA G+Q+ YD++                                  
Sbjct: 121 YTANGDKIEYDFLLVAVGLQLNYDKI---------------------------------- 146

Query: 176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAV 235
               GL EAL  P   V +NYSP+YV++T   L+ F+SG  ++T+P +P+KC GAP K +
Sbjct: 147 ---PGLVEALSIPKGKVCSNYSPKYVDRTFEALKAFKSGNAIFTYPNSPVKCPGAPQKIL 203

Query: 236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLA 295
            I + YLR  KKR  A +TY + + V+F    YA+++  I+  R ++V+    L+E+   
Sbjct: 204 YIAEHYLRNSKKRQNANVTYNSSLPVIFGVKHYADQLWKIVEKRNINVNLRTNLIEVLPE 263

Query: 296 NKEAVFKSEDKTER---LPYAIMHVTPPMGPVPELATSR-LVDQSGYVNVDKATLQHVKY 351
             +AVF++ DK E      Y  +HVTPPM     L+  + LV  +G+VNV+K TLQH+ Y
Sbjct: 264 KNQAVFQNLDKPEEKFTTDYEFLHVTPPMSAPDALSACKDLVTDTGFVNVNKDTLQHLNY 323

Query: 352 SNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKC 411
           SNVFAIGDCS  P SKTAA+VA Q KVVY N+ AVM        ++GY SCPLVTGY+ C
Sbjct: 324 SNVFAIGDCSASPNSKTAASVAAQSKVVYKNMIAVMNGVRPGQVFDGYASCPLVTGYNTC 383

Query: 412 VMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL 470
           ++AEFDY+L PLETFP+DQSKER  MF MKK +MP LYW+++L G WNGPG  R++ H 
Sbjct: 384 ILAEFDYSLTPLETFPIDQSKERISMFYMKKDIMPPLYWHMLLNGLWNGPGFARKLMHF 442

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260789882|ref|XP_002589973.1| hypothetical protein BRAFLDRAFT_81609 [Branchiostoma floridae] gi|229275160|gb|EEN45984.1| hypothetical protein BRAFLDRAFT_81609 [Branchiostoma floridae]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/455 (45%), Positives = 287/455 (63%), Gaps = 41/455 (9%)

Query: 20  STSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGG 79
           +T+P +      KL +VGGGAAG S  +KF  KLG+G V IVEP++ HYYQPM+TL+GGG
Sbjct: 31  TTTPAAGEKKHYKLCIVGGGAAGISNGSKFGRKLGQGNVCIVEPSEVHYYQPMWTLVGGG 90

Query: 80  MKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYD 139
           +K L+ S + M  V+P    W+K     F PENN VR   G+EI+Y+Y+IVA G+Q++Y+
Sbjct: 91  VKSLTQSGKAMADVMPQTVDWIKAGAEEFSPENNLVRCSDGTEITYDYLIVAMGLQLHYE 150

Query: 140 RVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQ 199
           +VKG                                     L EA      GV +N+S +
Sbjct: 151 KVKG-------------------------------------LPEAFQY--DGVGSNFSSK 171

Query: 200 YVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM 259
           YVEKT R +Q F+ G  ++TFP TPIKC GAP K + + D+Y  ++  RD A ++Y T +
Sbjct: 172 YVEKTFRAIQDFKGGNAIFTFPNTPIKCAGAPQKIMYLADDYWTRNNVRDKANISYNTAL 231

Query: 260 GVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERL--PYAIMHV 317
            V+F    YA  + D+   R + ++    LVE+    KEAVF+  D  +++  PY ++H+
Sbjct: 232 PVVFGVKKYAAILADLCQRRNLKINYRHNLVEVIPDKKEAVFEHLDTGDKITFPYDMIHI 291

Query: 318 TPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK 377
           TPPMGP+  L  S L D  G+V+VDK TLQHV+Y NVF+ GDCS+LPTSKTAAAVA QC 
Sbjct: 292 TPPMGPLEVLKKSPLADSVGWVDVDKQTLQHVRYPNVFSTGDCSSLPTSKTAAAVAAQCG 351

Query: 378 VVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLM 437
           ++Y+NLSA+M ++    +Y+GYTSCPLVT   KC++AEFDY L+PLETFPVDQ KER  M
Sbjct: 352 ILYNNLSAIMDSQEPGKKYDGYTSCPLVTSRGKCILAEFDYDLQPLETFPVDQGKERRTM 411

Query: 438 FQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
           + +K  VMP +YW  +L+G W GPG +R+   LG+
Sbjct: 412 WHLKANVMPEIYWTGLLKGRWAGPGFYRKAMRLGM 446

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224062533|ref|XP_002196890.1| PREDICTED: sulfide:quinone oxidoreductase, mitochondrial [Taeniopygia guttata]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/460 (45%), Positives = 294/460 (63%), Gaps = 42/460 (9%)

Query: 16  SSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL 75
           S    T+   ++ H  ++LV+GGGA G +M+A+   K+G   V++VEP+  HYYQP++TL
Sbjct: 29  SFGLHTAARCAAKHYYEVLVLGGGAGGIAMSARMKRKVGAENVAVVEPSKTHYYQPLWTL 88

Query: 76  IGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQ 135
           +GGG K+L+DS RPM SV+P+G  W+K ++++ DPE N V  +   ++SY+Y+I+A GI 
Sbjct: 89  VGGGAKQLADSARPMGSVMPTGVEWIKSQVIALDPEKNCVWLENDIKVSYKYLIIALGIS 148

Query: 136 MYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTN 195
           ++Y+++KG                                     L E  + P  G  +N
Sbjct: 149 LHYEKIKG-------------------------------------LPEGFNYPKIG--SN 169

Query: 196 YSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTY 255
           YS Q VEKT R LQ F+ G  ++TFP TP+KC GAP K + + D YLRK  KR  A + +
Sbjct: 170 YSVQTVEKTWRALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSDAYLRKTGKRSKANIMF 229

Query: 256 CTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPY 312
            T +GV+F    YA+ + +++  R + V+   +L+E+    +EAVF++ DK   TE   Y
Sbjct: 230 NTSLGVIFGVKKYADALLEVIKDRNIAVNYKHSLIEVRADKQEAVFENLDKPGVTEVHQY 289

Query: 313 AIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAV 372
            ++HVTPPMGP   L  S + D+ G+V+VDK TLQH KY NVF IGDC+NLPTSKTAAAV
Sbjct: 290 EMLHVTPPMGPPAVLINSPVSDEGGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKTAAAV 349

Query: 373 AGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSK 432
           A Q  V+ + +S VMKN     +Y+GYTSCPLVT Y+K ++AEFDY  +PLETFP+DQSK
Sbjct: 350 AAQSGVLDNTISLVMKNELPVKKYDGYTSCPLVTSYNKVILAEFDYNAQPLETFPIDQSK 409

Query: 433 ERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
           ER+ M+ MK  +MP LYWN +L+GYW GP  FR++ HLG+
Sbjct: 410 ERTTMYHMKADMMPLLYWNALLKGYWGGPAPFRKLMHLGL 449

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91078028|ref|XP_970713.1| PREDICTED: similar to sulfide quinone reductase [Tribolium castaneum] gi|270002305|gb|EEZ98752.1| hypothetical protein TcasGA2_TC001316 [Tribolium castaneum]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/456 (46%), Positives = 294/456 (64%), Gaps = 42/456 (9%)

Query: 19  FSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG 78
           FSTS  +++ HSCK+LVVGGG  GC+ AAKF+  L K ++ I+EP+++HYYQP+FTLIGG
Sbjct: 13  FSTSNFNNAKHSCKVLVVGGGTGGCATAAKFSKILKKNELIILEPSENHYYQPLFTLIGG 72

Query: 79  GMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYY 138
           G+  LSD+R+  K VLP  A W+KD    F+P++N V TQ G  I YE+++VA+G+Q  Y
Sbjct: 73  GISSLSDARKNTKEVLPKNAVWLKDSAAEFNPQSNSVTTQNGDTIEYEFLLVATGLQTDY 132

Query: 139 DRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSP 198
           D++ G  A +N+                                      D+GV +NYS 
Sbjct: 133 DKIPGLVAGLNS--------------------------------------DTGVCSNYSA 154

Query: 199 QYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTG 258
           +YVE T R LQ F++G  ++TFP +P+KC GAP K   I D +LRK  KRD A + Y T 
Sbjct: 155 KYVEGTYRALQKFENGNAIFTFPNSPVKCPGAPQKICYITDHFLRKVGKRDKANVIYNTS 214

Query: 259 MGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERL---PYAIM 315
           + V+F    YA+ +  +   R ++V+    L+E+    +EAVF++ DK E++    Y+++
Sbjct: 215 LPVIFGVKKYADALWKVCEERNINVNLRTNLIEVRPDKREAVFQNLDKPEQVTTFEYSML 274

Query: 316 HVTPPMGPVPELATSR-LVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAG 374
           HVTPPM   P L T R L ++SG+V+VDK+TLQ  K+SNVFAIGDCS+ P SKTAAA A 
Sbjct: 275 HVTPPMSTPPALRTCRSLTNESGFVDVDKSTLQSTKFSNVFAIGDCSSSPNSKTAAAAAA 334

Query: 375 QCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKER 434
           QC+VV+ N+ +VM  +     Y+GY SCPLVTGYS C++AEFDY L PLETFP +Q +E 
Sbjct: 335 QCQVVFKNMKSVMDGKTPVSAYDGYASCPLVTGYSTCILAEFDYNLAPLETFPFNQGREL 394

Query: 435 SLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL 470
             M+ MKK +MP LYWNLML G+WNGP + R + HL
Sbjct: 395 WSMYLMKKMLMPPLYWNLMLNGWWNGPALVRNLLHL 430

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|402874208|ref|XP_003900935.1| PREDICTED: sulfide:quinone oxidoreductase, mitochondrial [Papio anubis]

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/455 (44%), Positives = 292/455 (64%), Gaps = 46/455 (10%)

Query: 25  SSSSHSCK----LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
           + +SH+ +    +LV+GGG+ G +MAA+   K+G   V++VEP++ H+YQP++TL+G G 
Sbjct: 34  TGASHAARNHYEVLVLGGGSGGITMAARMKRKVGAENVAVVEPSERHFYQPIWTLVGAGA 93

Query: 81  KKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDR 140
           K+LS S RPM SV+PSG  W+K +++  +P+ N + T    +ISY Y+I+A GIQ++Y++
Sbjct: 94  KQLSSSGRPMASVIPSGVEWIKARVIELNPDKNCIHTDNDEQISYRYLIIALGIQLHYEK 153

Query: 141 VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQY 200
           +KG                                     L E    P  G  +NYS + 
Sbjct: 154 IKG-------------------------------------LPEGFAHPKIG--SNYSVKT 174

Query: 201 VEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG 260
           VEKT + LQ F+ G  ++TFP TP+KC GAP K + + + Y RK  KR  A + + T +G
Sbjct: 175 VEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLG 234

Query: 261 VLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPYAIMHV 317
            +F    YA+ + +I+  R + V+  + L+E+    +EAVF++ DK   T+ + Y ++HV
Sbjct: 235 AIFGVKKYADALQEIIRERNLTVNYKQNLIEVRADKQEAVFENLDKPGETQVISYEMLHV 294

Query: 318 TPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK 377
           TPPMGP   L TS + D +G+V+VDK TLQH +Y NVF IGDC+NLPTSKTAAAVA Q  
Sbjct: 295 TPPMGPPDVLKTSPVADAAGWVDVDKETLQHKRYPNVFGIGDCTNLPTSKTAAAVAAQSG 354

Query: 378 VVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLM 437
           ++   +S +MKN+    +Y+GYTSCPLVTGY++ ++AEFDY  +PLETFP DQSKER  M
Sbjct: 355 ILDRTISLIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYKAEPLETFPFDQSKERLSM 414

Query: 438 FQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
           + MK  +MPFLYWN+MLRGYW GP + R++FHLG+
Sbjct: 415 YVMKADLMPFLYWNMMLRGYWGGPAILRKLFHLGM 449

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291403088|ref|XP_002717932.1| PREDICTED: sulfide dehydrogenase like [Oryctolagus cuniculus]

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 284/444 (63%), Gaps = 42/444 (9%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           ++LV+GGG+ G +MAA+   K+G   V+IVEP++ H+YQP++TL+G G K+LS S RP  
Sbjct: 45  EVLVLGGGSGGITMAARMKRKVGAENVAIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTA 104

Query: 92  SVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINAL 151
           SV+PSG  W+K K+   +P+ N ++T  G EISY+Y+I+A GIQ+ Y+++KG        
Sbjct: 105 SVIPSGVEWIKAKVAELNPDKNCIQTDNGKEISYKYLIIALGIQLDYEKIKG-------- 156

Query: 152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF 211
                                        L E    P  G  +NYS + VEKT + LQ F
Sbjct: 157 -----------------------------LPEGFAHPKIG--SNYSVKTVEKTWKALQDF 185

Query: 212 QSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEK 271
           + G  ++TFP TP+KC GAP K + + + Y RK  KR  A + + T +G +F    YAE 
Sbjct: 186 KEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGTIFGVKKYAEA 245

Query: 272 IHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPYAIMHVTPPMGPVPELA 328
           + +I+  R + V+  + L+E+    +EAVF++ DK   T+   Y ++HVTPPM P   L 
Sbjct: 246 LEEIIQERNLTVNYKQNLIEVRADKQEAVFENLDKPGETQVFSYEMLHVTPPMSPPDVLK 305

Query: 329 TSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMK 388
           TS + D +G+V+VDK TLQH KY NVF IGDC+NLPTSKTAAAVA Q  ++   +S +MK
Sbjct: 306 TSPVADAAGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISLIMK 365

Query: 389 NRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFL 448
           N+    +Y+GYTSCPLVTGY+  ++AEFDYT +PLETFP DQSKER  M+ MK  +MPFL
Sbjct: 366 NQTPMKKYDGYTSCPLVTGYNSVILAEFDYTARPLETFPFDQSKERLSMYLMKADMMPFL 425

Query: 449 YWNLMLRGYWNGPGVFRQMFHLGV 472
           YWNLMLRGYW GP   R++FHLG+
Sbjct: 426 YWNLMLRGYWGGPAFLRKLFHLGM 449

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410961333|ref|XP_003987238.1| PREDICTED: sulfide:quinone oxidoreductase, mitochondrial isoform 1 [Felis catus] gi|410961335|ref|XP_003987239.1| PREDICTED: sulfide:quinone oxidoreductase, mitochondrial isoform 2 [Felis catus]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/452 (44%), Positives = 291/452 (64%), Gaps = 43/452 (9%)

Query: 24  LSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKL 83
           L++ +H  ++LV+GGG+ G +MAA+   ++G   V++VEP++ H+YQP++TL+G G K+L
Sbjct: 38  LAAKNH-YEVLVLGGGSGGITMAARMKRRVGAENVAVVEPSERHFYQPIWTLVGAGAKQL 96

Query: 84  SDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG 143
           S S RP  SV+PSG  W+K +++  +P+ N + T  G EISY+Y+I+A GIQ+ Y+++KG
Sbjct: 97  SSSGRPTASVIPSGVEWIKARVIELNPDKNCIHTDNGKEISYKYLIIALGIQLDYEKIKG 156

Query: 144 PSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEK 203
                                                L E  + P  G  +NYS + VEK
Sbjct: 157 -------------------------------------LPEGFEHPKIG--SNYSVKTVEK 177

Query: 204 TLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLF 263
           T + LQ F+ G  ++TFP TP+KC GAP K + + + Y RK  KR  A + + T +G +F
Sbjct: 178 TWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGAIF 237

Query: 264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPYAIMHVTPP 320
               YA  + +I+  R + V+  + L+E+    +EAVF++ DK   T+ + Y ++HVTPP
Sbjct: 238 GVKKYAAALQEIIQERDLTVNYKQNLIEVRADRQEAVFENLDKPGETQVISYEMLHVTPP 297

Query: 321 MGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY 380
           M P   L TS + D +G+V+VDK TLQH KY NVF IGDC+NLPTSKTAAAVA Q  ++ 
Sbjct: 298 MSPPDVLKTSPVADAAGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKTAAAVAAQSGILD 357

Query: 381 DNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQM 440
             +S VMKN+    +Y+GYTSCPLVTGY++ ++AEFDY  +PLETFP DQSKER  M+ M
Sbjct: 358 RTISLVMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYNAQPLETFPFDQSKERLSMYLM 417

Query: 441 KKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
           K  +MPFLYWN+MLRGYW GP + R++FHLG+
Sbjct: 418 KADLMPFLYWNMMLRGYWGGPAILRKLFHLGM 449

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	706
UNIPROTKB|F1SN58	450	SQRDL "Uncharacterized protein	0.422	0.662	0.496	5.6e-109
UNIPROTKB|E2QTQ8	450	SQRDL "Uncharacterized protein	0.422	0.662	0.490	5e-108
UNIPROTKB|Q9Y6N5	450	SQRDL "Sulfide:quinone oxidore	0.422	0.662	0.496	8.1e-108
UNIPROTKB|E1C7L3	450	SQRDL "Uncharacterized protein	0.412	0.646	0.493	8.2e-106
ZFIN|ZDB-GENE-050417-436	483	sqrdl "sulfide quinone reducta	0.412	0.602	0.484	1.2e-102
WB|WBGene00008538	471	sqrd-1 [Caenorhabditis elegans	0.294	0.441	0.375	1.4e-89
UNIPROTKB|Q81Q96	399	BAS2360 "Uncharacterized prote	0.389	0.689	0.419	5.1e-83
TIGR_CMR|BA_2537	399	BA_2537 "conserved hypothetica	0.389	0.689	0.419	5.1e-83
UNIPROTKB|F1LLX4	314	Sqrdl "Protein Sqrdl" [Rattus	0.412	0.926	0.506	1.5e-79
UNIPROTKB|F1SN59	298	F1SN59 "Uncharacterized protei	0.412	0.976	0.503	1e-77

UNIPROTKB|F1SN58 SQRDL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 785 (281.4 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
 Identities = 151/304 (49%), Positives = 206/304 (67%)

Query:   172 LDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP 231
             LD+  +  GL E  D P  G  +NYS + VEKT + LQ F+ G  ++TFP TP+KC GAP
Sbjct:   149 LDY-EKIKGLPEGFDHPKIG--SNYSFRTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAP 205

Query:   232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVE 291
              K + + + Y RK  +R  A + + T +G +F    YA+ + +I+  R + ++  + L+E
Sbjct:   206 QKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVKKYADALQEIIRERNLTINYKQNLIE 265

Query:   292 IDLANKEAVFKSEDK---TERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQH 348
             +    +EAVF++ DK   T+ + Y ++HVTPPM P   L TS + D +G+V+VDK TLQH
Sbjct:   266 VRADKQEAVFENLDKPGETQVISYEMLHVTPPMSPPDVLKTSPVADAAGWVDVDKDTLQH 325

Query:   349 VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGY 408
              +Y NVF IGDC+NLPTSKTAAAVA Q  V+   +S +MKN+    +Y+GYTSCPLVTGY
Sbjct:   326 KRYPNVFGIGDCTNLPTSKTAAAVAAQSGVLDRTISMIMKNQTPTKKYDGYTSCPLVTGY 385

Query:   409 SKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMF 468
             ++ ++AEFDY  KPLETFP DQSKER  M+ MK  +MPFLYWN MLRGYW GP   R++F
Sbjct:   386 NRVILAEFDYNAKPLETFPFDQSKERLSMYLMKANMMPFLYWNGMLRGYWGGPAFLRKLF 445

Query:   469 HLGV 472
             HLG+
Sbjct:   446 HLGM 449

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|E2QTQ8 SQRDL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 775 (277.9 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
 Identities = 149/304 (49%), Positives = 203/304 (66%)

Query:   172 LDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP 231
             LD+  +  GL E  D P  G  +NYS + VEKT + LQ F+ G  ++TFP TP+KC GAP
Sbjct:   149 LDY-EKIKGLPEGFDHPKIG--SNYSVKTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAP 205

Query:   232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVE 291
              K + + + Y RK  KR  A + + T +G +F    YA  + +I+  R + V+  + L+E
Sbjct:   206 QKIMYLSEAYFRKTGKRSKANIIFNTSLGTIFGVKKYAAALQEIIRERNLTVNYKQNLIE 265

Query:   292 IDLANKEAVFKSEDK---TERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQH 348
             +    +EAVF++ DK   T+ + Y ++HVTPPM     L  S + D  G+V+VDK TLQH
Sbjct:   266 VRADRQEAVFENLDKPGETQVISYEMLHVTPPMSSPDVLKASPVADAVGWVDVDKETLQH 325

Query:   349 VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGY 408
              KY NVF IGDC+NLPTSKTAAAVA Q  ++   +S +MKN+    +Y+GYTSCPLVTGY
Sbjct:   326 KKYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISLIMKNKKPTKKYDGYTSCPLVTGY 385

Query:   409 SKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMF 468
             ++ ++AEFDY  +PLETFP DQS+ER  M+ MK  +MPFLYWN+MLRGYW GP   R++F
Sbjct:   386 NRVILAEFDYNAQPLETFPFDQSRERLTMYLMKADLMPFLYWNMMLRGYWGGPAFLRKLF 445

Query:   469 HLGV 472
             HLG+
Sbjct:   446 HLGM 449

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q9Y6N5 SQRDL "Sulfide:quinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 788 (282.4 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
 Identities = 151/304 (49%), Positives = 206/304 (67%)

Query:   172 LDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP 231
             LD+  +  GL E    P  G  +NYS + VEKT + LQ F+ G  ++TFP TP+KC GAP
Sbjct:   149 LDY-EKIKGLPEGFAHPKIG--SNYSVKTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAP 205

Query:   232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVE 291
              K + + + Y RK  KR  A + + T +G +F    YA+ + +I+  R + V+  K L+E
Sbjct:   206 QKIMYLSEAYFRKTGKRSKANIIFNTSLGAIFGVKKYADALQEIIQERNLTVNYKKNLIE 265

Query:   292 IDLANKEAVFKSEDK---TERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQH 348
             +    +EAVF++ DK   T+ + Y ++HVTPPM P   L TS + D +G+V+VDK TLQH
Sbjct:   266 VRADKQEAVFENLDKPGETQVISYEMLHVTPPMSPPDVLKTSPVADAAGWVDVDKETLQH 325

Query:   349 VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGY 408
              +Y NVF IGDC+NLPTSKTAAAVA Q  ++   +S +MKN+    +Y+GYTSCPLVTGY
Sbjct:   326 RRYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISVIMKNQTPTKKYDGYTSCPLVTGY 385

Query:   409 SKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMF 468
             ++ ++AEFDY  +PLETFP DQSKER  M+ MK  +MPFLYWN+MLRGYW GP   R++F
Sbjct:   386 NRVILAEFDYKAEPLETFPFDQSKERLSMYLMKADLMPFLYWNMMLRGYWGGPAFLRKLF 445

Query:   469 HLGV 472
             HLG+
Sbjct:   446 HLGM 449

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0000098 "sulfur amino acid catabolic process" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0070221 "sulfide oxidation, using sulfide:quinone oxidoreductase" evidence=TAS

GO:0070224 "sulfide:quinone oxidoreductase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1C7L3 SQRDL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 756 (271.2 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
 Identities = 146/296 (49%), Positives = 199/296 (67%)

Query:   180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGD 239
             GL E    P  G  +NYS   VEKT + LQ F+ G  ++TFP TP+KC GAP K + + +
Sbjct:   156 GLPEGFHHPKIG--SNYSVHTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSE 213

Query:   240 EYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEA 299
              Y RK  KR  A + + T +GV+F    YA+ +  I+  R + V+    L+E+    +EA
Sbjct:   214 AYWRKTGKRPKANIMFNTSLGVIFGVKKYADALLKIIEERNIAVNYKCNLIEVRADKQEA 273

Query:   300 VFKSEDK---TERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFA 356
             VF++ DK   TE   Y ++HVTPPMGP   L  S + D+ G+V+V+K TLQH KY N+F 
Sbjct:   274 VFENLDKPGETEVHQYEMLHVTPPMGPPDVLINSPVSDEIGWVDVNKETLQHKKYPNIFG 333

Query:   357 IGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEF 416
             IGDC+NLPTS+TAAAVA Q  V+   +S VMKN++   +Y+GYTSCPLVT Y+K ++AEF
Sbjct:   334 IGDCTNLPTSRTAAAVAAQSGVLDKTISLVMKNQSPTKKYDGYTSCPLVTSYNKVILAEF 393

Query:   417 DYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
             DY  +PLETFP+DQSK+R+ M+ MK  +MPFLYWN +L+GYW GP   R++ HLG+
Sbjct:   394 DYNAQPLETFPIDQSKQRTSMYHMKADMMPFLYWNALLKGYWGGPAPIRKLMHLGL 449

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

ZFIN|ZDB-GENE-050417-436 sqrdl "sulfide quinone reductase-like (yeast)" [Danio rerio (taxid:7955)]

 Score = 709 (254.6 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
 Identities = 144/297 (48%), Positives = 194/297 (65%)

Query:   180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGD 239
             GL E  + P  G  +NYS + VEKT   L+ F+ G  L+TFP TP+KC GAP K + + D
Sbjct:   188 GLPEGFEHPKIG--SNYSLKTVEKTWDALKSFKEGNALFTFPNTPVKCAGAPQKIMYLSD 245

Query:   240 EYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEA 299
              +LRK  KR  A + + T + VLF    YA+ + +I+  R ++V+    L+E+    +EA
Sbjct:   246 AFLRKTGKRSKANIIFNTSLPVLFGVKKYADALWEIVKKRDLNVNLRHNLIEVRADKQEA 305

Query:   300 VFKSEDK---TERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFA 356
             +F++ DK   TE   Y ++HVTPPMGP   L  S L D  G+++V+K TLQH  Y NVF 
Sbjct:   306 LFENLDKPGETEVFKYEMLHVTPPMGPPAVLKGSLLDDAGGWLDVNKNTLQHKTYDNVFG 365

Query:   357 IGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEF 416
             IGDC+NLPTSKTAAAVA Q  V+   +S ++K +     Y+GYTSCPLVT Y+  ++AEF
Sbjct:   366 IGDCTNLPTSKTAAAVAAQSAVLDRTVSRILKKQTPDKAYDGYTSCPLVTSYNTVILAEF 425

Query:   417 DYTLKPLETFPV-DQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
             DY  +PLETFPV DQSKE  +M+ MK  VMP LYW+ +L+G W GPG +R M HLG+
Sbjct:   426 DYDGQPLETFPVVDQSKESRVMYHMKADVMPHLYWHGLLKGIWGGPGPYRTMMHLGM 482

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

WB|WBGene00008538 sqrd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 402 (146.6 bits), Expect = 1.4e-89, Sum P(3) = 1.4e-89
 Identities = 81/216 (37%), Positives = 123/216 (56%)

Query:   262 LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED-------KTERLPYAI 314
             LF    Y + +  +   + +DV   + L+E++  ++ A F+  D       KTE++ Y++
Sbjct:   253 LFGIESYLKSLEKVARDKEIDVRTRRNLIEVNTNDRIATFELLDEEAKPTGKTEQIEYSL 312

Query:   315 MHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAG 374
             +H+ PP      L  S  VD++G+++VD  +LQ  KY NVF +GDC N P +KTAAAV+ 
Sbjct:   313 LHIGPPCSTPEALRNSAFVDKTGFMDVDGGSLQSKKYPNVFGVGDCMNTPNAKTAAAVSS 372

Query:   375 QCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKER 434
               K +  NL+ VM+      +Y+GY SCPLV   ++ ++AEF      +ET P DQSK  
Sbjct:   373 HLKTIEKNLTQVMQGNRPCMQYDGYASCPLVVSTNRVILAEFG-PRGAMETTPFDQSKPT 431

Query:   435 SLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL 470
                + MK+  MP LYWN +++GYWNGP   R    L
Sbjct:   432 YWAYLMKRYFMPALYWNGLIKGYWNGPATLRNCTRL 467

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q81Q96 BAS2360 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 636 (228.9 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
 Identities = 117/279 (41%), Positives = 179/279 (64%)

Query:   180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGD 239
             GL+E++    +GV +NYS +YV+ T R ++ F+ G  ++T   TPIKCGGAP K + + +
Sbjct:   121 GLKESIGT--NGVCSNYSYKYVDSTWREIEKFKGGNAVFTHQNTPIKCGGAPQKIMYLAE 178

Query:   240 EYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEA 299
             EY      R+ +++ + T    +F  P YA  +  +L  + +  +  K LVEI    KEA
Sbjct:   179 EYFSNSGVRNKSEVMFYTANANIFQVPRYANTLEQVLERKQIITNYNKNLVEIIAEKKEA 238

Query:   300 VFKSED--KTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAI 357
             +F+     K E +PY+++HV PPMGP   L  S + D  G++++   TLQHVKY N+F +
Sbjct:   239 IFEDTQTLKRETVPYSMIHVVPPMGPPNFLKESEISDHQGWIDISPYTLQHVKYKNIFGL 298

Query:   358 GDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFD 417
             GDC+NLPTSKT AA+  Q  ++  N+  V+  R L  +Y+GYTSCP++TGY   ++AEF+
Sbjct:   299 GDCTNLPTSKTGAAIRKQIPILKQNIMDVLNGRDLQAKYDGYTSCPIITGYKSLILAEFN 358

Query:   418 YTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRG 456
             Y  +P ETFP +Q+KER  MF +K+ ++P++YWN ML+G
Sbjct:   359 YEHEPQETFPFNQAKERYSMFLLKRYMLPYMYWNFMLKG 397

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2537 BA_2537 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 636 (228.9 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
 Identities = 117/279 (41%), Positives = 179/279 (64%)

Query:   180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGD 239
             GL+E++    +GV +NYS +YV+ T R ++ F+ G  ++T   TPIKCGGAP K + + +
Sbjct:   121 GLKESIGT--NGVCSNYSYKYVDSTWREIEKFKGGNAVFTHQNTPIKCGGAPQKIMYLAE 178

Query:   240 EYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEA 299
             EY      R+ +++ + T    +F  P YA  +  +L  + +  +  K LVEI    KEA
Sbjct:   179 EYFSNSGVRNKSEVMFYTANANIFQVPRYANTLEQVLERKQIITNYNKNLVEIIAEKKEA 238

Query:   300 VFKSED--KTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAI 357
             +F+     K E +PY+++HV PPMGP   L  S + D  G++++   TLQHVKY N+F +
Sbjct:   239 IFEDTQTLKRETVPYSMIHVVPPMGPPNFLKESEISDHQGWIDISPYTLQHVKYKNIFGL 298

Query:   358 GDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFD 417
             GDC+NLPTSKT AA+  Q  ++  N+  V+  R L  +Y+GYTSCP++TGY   ++AEF+
Sbjct:   299 GDCTNLPTSKTGAAIRKQIPILKQNIMDVLNGRDLQAKYDGYTSCPIITGYKSLILAEFN 358

Query:   418 YTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRG 456
             Y  +P ETFP +Q+KER  MF +K+ ++P++YWN ML+G
Sbjct:   359 YEHEPQETFPFNQAKERYSMFLLKRYMLPYMYWNFMLKG 397

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1LLX4 Sqrdl "Protein Sqrdl" [Rattus norvegicus (taxid:10116)]

 Score = 777 (278.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 150/296 (50%), Positives = 199/296 (67%)

Query:   180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGD 239
             GL E    P  G  +NYS + VEKT + LQ F+ G  L+TFP TP+KC GAP K + + +
Sbjct:    20 GLPEGFAYPKIG--SNYSVKTVEKTWKALQDFKEGNALFTFPNTPVKCAGAPQKIMYLSE 77

Query:   240 EYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEA 299
              Y RK  KR  A + + T +G +F    YA+ + +I+  R V V+    L+E+    +EA
Sbjct:    78 AYFRKTGKRSKANIIFNTALGTIFGVKKYADALQEIIRERNVSVNYKHNLIEVRADKQEA 137

Query:   300 VFKSEDK---TERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFA 356
             VF++ DK   T  + Y ++HVTPPM     L  S + D +G+V+VDK TLQH KY NVF 
Sbjct:   138 VFENLDKPGETHVIHYEMLHVTPPMSSPDVLKRSPVADSAGWVDVDKETLQHKKYPNVFG 197

Query:   357 IGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEF 416
             IGDC+NLPTSKTAAAVA Q  ++   +S +MKN+    +Y+GYTSCPLVTGY++ ++AEF
Sbjct:   198 IGDCTNLPTSKTAAAVAAQSGILDRTISLIMKNQTPTKKYDGYTSCPLVTGYNRVILAEF 257

Query:   417 DYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
             DYT +PLETFP DQSKER  M+ MK  +MPFLYWN+MLRGYW GP   R++FHLG+
Sbjct:   258 DYTAQPLETFPFDQSKERISMYLMKADMMPFLYWNMMLRGYWGGPAFLRKLFHLGL 313

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1SN59 F1SN59 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 149/296 (50%), Positives = 202/296 (68%)

Query:   180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGD 239
             GL E  D P  G  +NYS + VEKT + LQ F+ G  ++TFP TP+KC GAP K + + +
Sbjct:     4 GLPEGFDHPKIG--SNYSFRTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSE 61

Query:   240 EYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEA 299
              Y RK  +R  A + + T +G +F    YA+ + +I+  R + ++  + L+E+    +EA
Sbjct:    62 AYFRKTGRRSKANIIFNTSLGAIFGVKKYADALQEIIRERNLTINYKQNLIEVRADKQEA 121

Query:   300 VFKSEDK---TERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFA 356
             VF++ DK   T+ + Y ++HVTPPM P   L TS + D +G+V+VDK TLQH +Y NVF 
Sbjct:   122 VFENLDKPGETQVISYEMLHVTPPMSPPDVLKTSPVADAAGWVDVDKDTLQHKRYPNVFG 181

Query:   357 IGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEF 416
             IGDC+NLPTSKTAAAVA Q  V+   +S +MKN+    +Y+GYTSCPLVTGY++ ++AEF
Sbjct:   182 IGDCTNLPTSKTAAAVAAQSGVLDRTISLIMKNQTPTKKYDGYTSCPLVTGYNRVILAEF 241

Query:   417 DYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
             DY  KPLETFP DQSKER  M+ MK  +MPFLYWN MLRGYW GP   R++FHLG+
Sbjct:   242 DYNAKPLETFPFDQSKERLSMYLMKANMMPFLYWNGMLRGYWGGPAFLRKLFHLGM 297

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	706
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	3e-30
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	1e-12
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	2e-12
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	1e-07
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	2e-06
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	3e-06
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	4e-06
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	4e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	0.001
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	0.001
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.002
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	0.002

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  123 bits (310), Expect = 3e-30
 Identities = 78/408 (19%), Positives = 133/408 (32%), Gaps = 84/408 (20%)

Query: 34  LVVGGGAAGCSMAAKFTSKLGKGQVSIV--EPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           ++VGGGAAG S A      L   +++++  EP   +Y  P+   +GGG+  L D R P  
Sbjct: 2   VIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP- 60

Query: 92  SVLPSGATWVK----DKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSAL 147
               + AT +      ++ S DPEN  V    G EI Y+Y+++A+G +            
Sbjct: 61  --RFNRATGIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGAR------------ 105

Query: 148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRN 207
                                                   P     +++      +   +
Sbjct: 106 ----------------------------------------PRPPPISDWEGVVTLRLRED 125

Query: 208 LQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPF 267
            +  + G                     L   E   K  K+           G L     
Sbjct: 126 AEALKGG-----AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEV 180

Query: 268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT--ERLPYAIMHVTPPMGPVP 325
            AE++ ++L   GV++  G  +V ++      V +       E +   ++ + P   P  
Sbjct: 181 -AEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV 239

Query: 326 ELATS---RLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA---GQCKVV 379
            LA      L    G V VD+      K  +V+A GD + +P ++T            V 
Sbjct: 240 VLANDALPGLALAGGAVLVDERGGTS-KDPDVYAAGDVAEIPAAETGKGGRIALWAIAVA 298

Query: 380 YDNLSAVMKNRALPHE-------YNGYTSCPLVTGYSKCVMAEFDYTL 420
              ++A     AL           +    C   TG ++      D  L
Sbjct: 299 AGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVL 346

Length = 415

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 69.6 bits (171), Expect = 1e-12
 Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           +++++GGG  G S A +   KL   ++++V+  D H + P+   +  G    S+   P++
Sbjct: 5   RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLR 64

Query: 92  SVL--PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG 143
           ++L       +V+ ++   D +  +V      EISY+Y++VA G +  Y  + G
Sbjct: 65  ALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPG 118

Length = 405

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 74/374 (19%)

Query: 33  LLVVGGGAAGCSMAAKFTSKLGKGQ-VSIVEPTDDHYYQPMFTLIGGGMKKLSDSR---R 88
           L+++GGG     +  ++  K   G  V+++ P+    Y  M   +  G   L + R   R
Sbjct: 2   LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLR 61

Query: 89  PMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALI 148
            +     +GA +V  +    DP+  +V       +SY+ + +  G       V+G + L 
Sbjct: 62  RL--ARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLA 119

Query: 149 NALGHCDLVRSFVTFPLFFPRRTLD-FLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRN 207
                              P + ++ FL R   L E+ D P                   
Sbjct: 120 ------------------VPVKPIENFLARWEALLESADAPP------------------ 143

Query: 208 LQHFQSGPVLYTFPATPIKCGGAPMKAV-LIGDEYLRKH-KKRD-AAKLTYCTGMGVLFP 264
                            +   G     V +     LR+   KR    ++T   G  +L  
Sbjct: 144 -------------GTKRLAVVGGGAAGVEIALA--LRRRLPKRGLRGQVTLIAGASLLPG 188

Query: 265 -SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP 323
                   +  +L  RG++VH+G  +         A+  ++ +T     AI+  T    P
Sbjct: 189 FPAKVRRLVLRLLARRGIEVHEGAPVTRG---PDGALILADGRTLP-ADAILWATGARAP 244

Query: 324 VPELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAA----AVAGQCKV 378
            P LA S L +D+ G++ VD  TLQ + + +VFA GDC+ +  +        AV  Q  +
Sbjct: 245 -PWLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVR-QAPI 301

Query: 379 VYDNLSAVMKNRAL 392
           +  NL A ++ + L
Sbjct: 302 LAANLRASLRGQPL 315

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (10%)

Query: 265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIM----HVTPP 320
            P  ++     L   GV+V  G  + E+     + V   +D  E +P   +     V   
Sbjct: 208 PPKLSKYAERALEKLGVEVLLGTPVTEVT---PDGV-TLKDGEEEIPADTVVWAAGVRAS 263

Query: 321 MGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA----GQC 376
             P+ +  +    D+ G + V+  TLQ   + ++FA GDC+ +   +     A     Q 
Sbjct: 264 --PLLKDLSGLETDRRGRLVVNP-TLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQG 320

Query: 377 KVVYDNLSAVMKNRAL-PHEYNGYTSC 402
           +    N+ A +K + L P +Y    + 
Sbjct: 321 EYAAKNIKARLKGKPLKPFKYKDKGTL 347

Length = 405

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 560 VEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL--PSGATWVKDKIVSFDPENNRVRTQ 617
           V+  D H + P+   +  G    S+   P++++L       +V+ ++   D +  +V   
Sbjct: 34  VDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLA 93

Query: 618 AGSEISYEYMIVASGIQMYYDRVKG------GTTSLEDRGKMR 654
              EISY+Y++VA G +  Y  + G      G  +LED  ++R
Sbjct: 94  DLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLR 136

Length = 405

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVK----DKIVSFDPENNRV 614
             EP   +Y  P+   +GGG+  L D R P      + AT +      ++ S DPEN  V
Sbjct: 30  GREPKYSYYRCPLSLYVGGGIASLEDLRYPP---RFNRATGIDVRTGTEVTSIDPENKVV 86

Query: 615 RTQAGSEISYEYMIVASGIQ 634
               G EI Y+Y+++A+G +
Sbjct: 87  LLDDG-EIEYDYLVLATGAR 105

Length = 415

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 37/140 (26%)

Query: 34  LVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH------------YYQPMFTLIGGGMK 81
           LVVG GAAG + A      LG   V IV+                  +QP F     GM 
Sbjct: 1   LVVGAGAAGMAFADHL-LDLGDAPVIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFGMP 59

Query: 82  KL--------------------SDSRRPMKSVLPSGATWVK--DKIVSFDPENNR--VRT 117
            L                    ++    ++ +       ++   ++ + + +  R  VR 
Sbjct: 60  DLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRFVVRL 119

Query: 118 QAGSEISYEYMIVASGIQMY 137
             G  +  +Y++ A+G    
Sbjct: 120 TDGETVRADYVVDATGAFSV 139

Length = 202

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIV--EPTDDHYYQPMFTLIGGGMKKLSDSRRP 526
           +VGGGAAG S A      L   +++++  EP   +Y  P+   +GGG+  L D R P
Sbjct: 3   IVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYP 59

Length = 415

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 35/181 (19%), Positives = 52/181 (28%), Gaps = 59/181 (32%)

Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH------------YYQPMFTLIGGGMKK 519
           VVG GAAG + A      LG   V IV+                  +QP F     GM  
Sbjct: 2   VVGAGAAGMAFADHL-LDLGDAPVIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFGMPD 60

Query: 520 LSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDD---HYYQPMFTLIG 576
           L+                     +S D+S  +           +      Y + +     
Sbjct: 61  LN--------------------ALSIDTSPKWDGKAEL----ASGAEIAAYLEDL----- 91

Query: 577 GGMKKLSDSRRPMKSVLPSGA-TWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQM 635
              ++           LP    T V    V  D     VR   G  +  +Y++ A+G   
Sbjct: 92  --ARRY---------GLPIRLSTRVTA--VERDGGRFVVRLTDGETVRADYVVDATGAFS 138

Query: 636 Y 636
            
Sbjct: 139 V 139

Length = 202

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIV----EPTDDHYYQPMFTLIGGGMKKLSDSR 87
           KL+++G G AG     +   +       I     EP   +Y + + + +  G K   D  
Sbjct: 5   KLVIIGNGMAGHRTIEELL-ESAPDLYDITVFGEEP-RPNYNRILLSSVLAGEKTAED-- 60

Query: 88  RPMKSVLPSGATW---------VKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
                +  +   W           +K++  D  N  V T AG  +SY+ +I+A+G
Sbjct: 61  -----ISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATG 110

Length = 793

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ----PMFTLIGG--GMKKLSD 85
            ++++GGG AG + AA   ++LG  +V+++E      Y     P   L+    G++    
Sbjct: 1   DVVIIGGGPAGLA-AAIRLARLG-LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIG 58

Query: 86  SRRPMKSVLPSGATW-VKDKIVSFDPENNRVR---TQAGSEISYEYMIVASG 133
              P +     G    +  ++V  D     V     + G EI+Y+ +I+A+G
Sbjct: 59  LALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
          +++VVGGG  G   A+    KLG  +V++VE  D
Sbjct: 1  RVVVVGGGYIGLEFASALA-KLGS-KVTVVERRD 32

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	706
KOG3851|consensus	446		100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
KOG2495|consensus	491		100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.97
PLN02507	499	glutathione reductase	99.97
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.96
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.96
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.96
PRK06116	450	glutathione reductase; Validated	99.96
KOG1336|consensus	478		99.96
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.96
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.95
PRK14694	468	putative mercuric reductase; Provisional	99.95
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.95
PRK06370	463	mercuric reductase; Validated	99.95
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.95
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.95
TIGR02053	463	MerA mercuric reductase. This model represents the	99.95
PLN02546	558	glutathione reductase	99.95
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.95
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.95
PTZ00058	561	glutathione reductase; Provisional	99.95
PRK10262	321	thioredoxin reductase; Provisional	99.95
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.95
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.94
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.94
PRK13748	561	putative mercuric reductase; Provisional	99.94
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.94
PRK14727	479	putative mercuric reductase; Provisional	99.94
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.94
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.94
PRK07846	451	mycothione reductase; Reviewed	99.94
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.94
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.94
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.94
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.93
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.93
PRK12831	464	putative oxidoreductase; Provisional	99.93
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.93
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.93
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.93
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.93
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.93
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.92
PTZ00052	499	thioredoxin reductase; Provisional	99.92
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.92
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.92
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.92
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.91
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.91
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.91
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.9
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.9
KOG0405|consensus	478		99.9
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.89
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.89
KOG1335|consensus	506		99.88
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.87
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.87
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.87
PRK13984	604	putative oxidoreductase; Provisional	99.86
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.85
KOG4716|consensus	503		99.84
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.84
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.83
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.8
KOG1346|consensus	659		99.8
PLN02852	491	ferredoxin-NADP+ reductase	99.78
KOG0404|consensus	322		99.78
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.77
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.72
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.69
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.67
KOG3851|consensus	446		99.67
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.65
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.65
KOG0399|consensus	2142		99.64
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.64
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.62
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.62
KOG2495|consensus	491		99.62
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.61
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.61
PRK14694	468	putative mercuric reductase; Provisional	99.61
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.58
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.58
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.57
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.57
PLN02507	499	glutathione reductase	99.56
KOG2755|consensus	334		99.56
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.55
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.55
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.55
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.54
PRK06116	450	glutathione reductase; Validated	99.54
KOG0405|consensus	478		99.53
PRK06370	463	mercuric reductase; Validated	99.52
PTZ00058	561	glutathione reductase; Provisional	99.52
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.51
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.51
PRK13748	561	putative mercuric reductase; Provisional	99.5
TIGR02053	463	MerA mercuric reductase. This model represents the	99.5
PLN02546	558	glutathione reductase	99.49
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.49
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.49
PRK14727	479	putative mercuric reductase; Provisional	99.49
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.48
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.48
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.48
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.48
KOG1335|consensus	506		99.48
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.47
PRK07846	451	mycothione reductase; Reviewed	99.46
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.44
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.44
KOG1336|consensus	478		99.44
KOG4716|consensus	503		99.43
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.39
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.39
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.39
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.39
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.39
PTZ00052	499	thioredoxin reductase; Provisional	99.38
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.37
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.37
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.37
PRK10262	321	thioredoxin reductase; Provisional	99.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.35
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.35
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.33
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.32
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.28
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.26
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.22
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.21
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.18
PRK12831	464	putative oxidoreductase; Provisional	99.13
COG2081	408	Predicted flavoproteins [General function predicti	99.12
KOG1346|consensus	659		99.1
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.07
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.06
COG2081	408	Predicted flavoproteins [General function predicti	99.05
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.05
KOG1399|consensus	448		99.01
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.98
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.98
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.98
PLN02852	491	ferredoxin-NADP+ reductase	98.97
KOG1399|consensus	448		98.97
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.97
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.96
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.94
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.87
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.86
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.84
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.83
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.83
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.83
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.83
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.82
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.82
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.81
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.81
COG0579	429	Predicted dehydrogenase [General function predicti	98.79
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.79
PTZ00188	506	adrenodoxin reductase; Provisional	98.79
KOG1800|consensus	468		98.74
KOG0404|consensus	322		98.7
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.7
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.7
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.68
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.68
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.68
PRK13984	604	putative oxidoreductase; Provisional	98.65
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.53
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.51
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.51
KOG2755|consensus	334		98.51
PLN02463	447	lycopene beta cyclase	98.5
PRK10157	428	putative oxidoreductase FixC; Provisional	98.49
PRK06847	375	hypothetical protein; Provisional	98.49
PRK10015	429	oxidoreductase; Provisional	98.46
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.43
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.42
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.42
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.42
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.4
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.39
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.39
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.38
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.37
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.36
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.33
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.32
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.31
PLN02661	357	Putative thiazole synthesis	98.3
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.29
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.28
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.27
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.26
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.26
PRK05257	494	malate:quinone oxidoreductase; Validated	98.26
PLN02463	447	lycopene beta cyclase	98.25
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.25
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.24
KOG1800|consensus	468		98.24
PRK06847	375	hypothetical protein; Provisional	98.23
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.22
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.22
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.21
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.21
PRK06184	502	hypothetical protein; Provisional	98.21
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.21
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.21
PLN02697	529	lycopene epsilon cyclase	98.2
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.2
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.19
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.19
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.18
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.18
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.18
PRK07588	391	hypothetical protein; Provisional	98.18
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.17
PRK09897	534	hypothetical protein; Provisional	98.16
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.15
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.13
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.13
PRK07190	487	hypothetical protein; Provisional	98.11
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.11
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.11
PRK08163	396	salicylate hydroxylase; Provisional	98.1
KOG2820|consensus	399		98.1
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.1
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.1
PRK07233	434	hypothetical protein; Provisional	98.09
PRK08244	493	hypothetical protein; Provisional	98.08
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.08
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.06
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.06
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.06
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.06
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.06
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.05
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.05
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.05
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.05
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.04
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.02
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.02
PRK06184	502	hypothetical protein; Provisional	98.0
PRK07236	386	hypothetical protein; Provisional	98.0
PTZ00188	506	adrenodoxin reductase; Provisional	98.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.99
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.99
PRK05868	372	hypothetical protein; Validated	97.99
PRK06834	488	hypothetical protein; Provisional	97.98
PRK06753	373	hypothetical protein; Provisional	97.97
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.97
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.96
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.96
PRK10015	429	oxidoreductase; Provisional	97.96
PRK06834	488	hypothetical protein; Provisional	97.95
PRK10157	428	putative oxidoreductase FixC; Provisional	97.94
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.93
PRK05868	372	hypothetical protein; Validated	97.93
PRK07045	388	putative monooxygenase; Reviewed	97.92
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.92
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.92
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.92
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.92
PLN02697	529	lycopene epsilon cyclase	97.91
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.91
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.91
PRK06185	407	hypothetical protein; Provisional	97.9
PRK07236	386	hypothetical protein; Provisional	97.9
PRK09126	392	hypothetical protein; Provisional	97.89
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.88
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.87
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.86
PRK06126	545	hypothetical protein; Provisional	97.86
PRK07588	391	hypothetical protein; Provisional	97.86
PRK08163	396	salicylate hydroxylase; Provisional	97.86
PRK09897	534	hypothetical protein; Provisional	97.86
PRK08013	400	oxidoreductase; Provisional	97.85
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.85
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.84
PRK11445	351	putative oxidoreductase; Provisional	97.83
PRK08274	466	tricarballylate dehydrogenase; Validated	97.83
PRK06753	373	hypothetical protein; Provisional	97.8
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.8
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.79
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.77
PRK07190	487	hypothetical protein; Provisional	97.77
PRK07045	388	putative monooxygenase; Reviewed	97.75
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.74
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.73
PRK11445	351	putative oxidoreductase; Provisional	97.72
PRK09126	392	hypothetical protein; Provisional	97.72
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.69
KOG2665|consensus	453		97.69
PRK08401	466	L-aspartate oxidase; Provisional	97.67
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.66
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.66
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.66
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.66
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.65
PRK06996	398	hypothetical protein; Provisional	97.65
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.64
KOG2415|consensus	621		97.63
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.63
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.63
KOG0399|consensus	2142		97.62
PRK08401	466	L-aspartate oxidase; Provisional	97.62
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.62
PRK08244	493	hypothetical protein; Provisional	97.62
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.6
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.59
KOG0029|consensus	501		97.59
COG0579	429	Predicted dehydrogenase [General function predicti	97.59
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.58
PLN02985	514	squalene monooxygenase	97.57
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.57
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.57
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.56
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.56
PRK06185	407	hypothetical protein; Provisional	97.55
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.54
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.54
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.52
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.51
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.5
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.48
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.47
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.44
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.43
COG3349	485	Uncharacterized conserved protein [Function unknow	97.43
PRK06126	545	hypothetical protein; Provisional	97.42
KOG2853|consensus	509		97.42
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.42
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.41
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.39
KOG2852|consensus	380		97.38
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.34
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.31
PRK07208	479	hypothetical protein; Provisional	97.28
PLN02268	435	probable polyamine oxidase	97.26
PRK08013	400	oxidoreductase; Provisional	97.26
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.26
PLN02661	357	Putative thiazole synthesis	97.22
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.22
PRK07538	413	hypothetical protein; Provisional	97.22
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.21
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.2
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.2
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.16
PRK06475	400	salicylate hydroxylase; Provisional	97.14
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.14
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.13
PRK07538	413	hypothetical protein; Provisional	97.13
PLN02985	514	squalene monooxygenase	97.12
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.11
PTZ00367	567	squalene epoxidase; Provisional	97.1
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.09
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.09
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.08
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.08
PTZ00367	567	squalene epoxidase; Provisional	97.07
KOG1276|consensus	491		97.07
KOG0685|consensus	498		97.07
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.06
PRK06475	400	salicylate hydroxylase; Provisional	97.05
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.05
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.04
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.04
PLN02576	496	protoporphyrinogen oxidase	97.03
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.02
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.01
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.0
PLN02487	569	zeta-carotene desaturase	97.0
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.95
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	96.95
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.94
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.9
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	96.88
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	96.87
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.85
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.81
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	96.81
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.79
PRK08294	634	phenol 2-monooxygenase; Provisional	96.78
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.77
PRK07121	492	hypothetical protein; Validated	96.77
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.76
PLN02568	539	polyamine oxidase	96.75
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.72
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.71
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.7
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.69
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.69
PLN02612	567	phytoene desaturase	96.69
PLN02529	738	lysine-specific histone demethylase 1	96.68
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.68
KOG2820|consensus	399		96.66
PRK08294	634	phenol 2-monooxygenase; Provisional	96.66
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.63
KOG2614|consensus	420		96.63
PRK07208	479	hypothetical protein; Provisional	96.63
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.61
KOG2844|consensus	856		96.61
PRK06996	398	hypothetical protein; Provisional	96.61
KOG2311|consensus	679		96.57
PLN02676	487	polyamine oxidase	96.56
KOG2853|consensus	509		96.54
KOG0029|consensus	501		96.51
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.49
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.48
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.45
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.4
PRK07804	541	L-aspartate oxidase; Provisional	96.4
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.4
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.37
PRK08275	554	putative oxidoreductase; Provisional	96.37
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.37
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	96.34
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.32
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.3
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.3
KOG2311|consensus	679		96.29
PLN02815	594	L-aspartate oxidase	96.29
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.27
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.27
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.24
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.23
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.21
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.18
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.18
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.14
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.14
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.14
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.14
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.13
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.12
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.11
PRK11883	451	protoporphyrinogen oxidase; Reviewed	96.11
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.07
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.06
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.06
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.05
PLN03000	881	amine oxidase	96.0
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.99
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	95.97
KOG2960|consensus	328		95.97
PRK06175	433	L-aspartate oxidase; Provisional	95.95
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	95.94
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	95.91
PRK12416	463	protoporphyrinogen oxidase; Provisional	95.86
PRK12839	572	hypothetical protein; Provisional	95.79
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.78
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	95.77
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.77
KOG1298|consensus	509		95.76
PRK07395	553	L-aspartate oxidase; Provisional	95.75
PRK08274	466	tricarballylate dehydrogenase; Validated	95.74
PLN02268	435	probable polyamine oxidase	95.72
PRK02106	560	choline dehydrogenase; Validated	95.72
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.7
KOG2960|consensus	328		95.67
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.66
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	95.63
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	95.62
PRK05257	494	malate:quinone oxidoreductase; Validated	95.61
KOG2415|consensus	621		95.6
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.6
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.56
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	95.54
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	95.54
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	95.52
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.46
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.45
PRK09077	536	L-aspartate oxidase; Provisional	95.44
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	95.44
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.42
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.41
PLN02976	1713	amine oxidase	95.41
PRK07233	434	hypothetical protein; Provisional	95.4
PRK08071	510	L-aspartate oxidase; Provisional	95.39
PTZ00383	497	malate:quinone oxidoreductase; Provisional	95.39
PRK13339	497	malate:quinone oxidoreductase; Reviewed	95.38
PLN02568	539	polyamine oxidase	95.35
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.34

>KOG3851|consensus

Probab=100.00  E-value=4.6e-62  Score=466.98  Aligned_cols=406  Identities=52%  Similarity=0.956  Sum_probs=386.2

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEcee
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI  105 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v  105 (706)
                      ......+|+|||||.+|+++|..+.++++.-+|.+||+.++|+|+|+|..+.+|..+.++......++.+.+..|+++.|
T Consensus        35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv  114 (446)
T KOG3851|consen   35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKV  114 (446)
T ss_pred             hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHH
Confidence            33456799999999999999999999988889999999999999999999999999999998999999999999999999


Q ss_pred             EEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         106 VSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                      ++++|++++|.+++|+++.|||||||+|...++..|+|                                     +.+++
T Consensus       115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkG-------------------------------------l~Eal  157 (446)
T KOG3851|consen  115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKG-------------------------------------LVEAL  157 (446)
T ss_pred             HhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcC-------------------------------------hHhhc
Confidence            99999999999999999999999999999999999999                                     88999


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCCc
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPS  265 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~  265 (706)
                      +.+  .||++|++..++..++.+.++++|+.++.+++.++.|+|+|++++++.+.+++++|.++++.+.+.++.+.+|+-
T Consensus       158 ~tP--~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgV  235 (446)
T KOG3851|consen  158 DTP--GVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGV  235 (446)
T ss_pred             cCC--CcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecH
Confidence            988  899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCC-c--eEEeecEEEECCCCCchhhhhcCCCCCCCCceeeC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK-T--ERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVD  342 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~-g--~~i~~D~vI~a~G~~~~~~~~~~~l~~~~G~i~vd  342 (706)
                      +...+.+++..++++|++.....+.++..+++..+++.+++ |  ++++++++-+++...+++.++++.+.|..||+.||
T Consensus       236 k~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD  315 (446)
T KOG3851|consen  236 KHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVD  315 (446)
T ss_pred             HHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecC
Confidence            88999999999999999999999999998888788877764 4  57899999999999999999999999999999999


Q ss_pred             ccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCCCCcccceeeEEEEecCCeEEEEEEeCCCCc
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKP  422 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  422 (706)
                      ..|+|++.+||||++|||++.|..|+++.+..|..++-+|+...++|+.+...|+|+.+|++.+|.++.++++|+|.-.+
T Consensus       316 ~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt~~ydGYtSCPlvtgy~k~iLaeF~yk~~p  395 (446)
T KOG3851|consen  316 QSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRPTMKYDGYTSCPLVTGYNKVILAEFDYKREP  395 (446)
T ss_pred             hhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcCCCcceeecCcccCceeeccceEEEEeeccccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCchhHHHHHHHhhchHHHHHHhhcceecCCCcccccccc
Q psy8791         423 LETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL  470 (706)
Q Consensus       423 ~~~~~~~~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i  470 (706)
                      .++||+++.++++.+++||++++|..||+.|++|+|.++.-.++.+.+
T Consensus       396 ~Etfp~DQsk~r~~~y~mKk~fmP~lYWn~m~rGyW~Gpa~lr~~f~v  443 (446)
T KOG3851|consen  396 KETFPLDQSKPRYSMYLMKKDFMPFLYWNFMVRGYWNGPALLRKHFPV  443 (446)
T ss_pred             cccCCccccchHHHHHHHHhhHHHHHHHHHhhhccccCchhhcccccc
Confidence            999999999999999999999999999999999999999877776655

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=8.4e-50  Score=413.97  Aligned_cols=344  Identities=24%  Similarity=0.360  Sum_probs=276.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-C-CcEEEEceeE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-S-GATWVKDKIV  106 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~i~~~v~  106 (706)
                      .+++|||||||+||+.+|..|.+..++.+|||||++++|.|+|+++.+..+..+.+.+..|+..+++ . +++|++++|+
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~   81 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT   81 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence            4679999999999999999999973358999999999999999999999999999999999999987 4 4999999999


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccc-cccCccchhhhh
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLD-FLRRPSGLQEAL  185 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~  185 (706)
                      +||+++++|++.++.++.||+||+|+|+.++++.+||+  +||+                |.+++++ +.+.++++.+.+
T Consensus        82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~--~E~a----------------~~lks~edA~~ir~~l~~~f  143 (405)
T COG1252          82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGA--AEYA----------------FGLKTLEDALRLRRHLLEAF  143 (405)
T ss_pred             EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCH--HHhC----------------CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999997789999999999999999999994  5666                4455555 334334443322


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHH-cCCCCCcEEEEEeCCCcCCC
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRK-HKKRDAAKLTYCTGMGVLFP  264 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~-~g~~~~~~v~l~~~~~~~~~  264 (706)
                      +...       ....  .  +.+.    .-+|+++|.++|+.+|..   ...+...+++ .....+++|+++++.+++++
T Consensus       144 e~a~-------~~~~--~--~~~l----ti~IvGgG~TGVElAgeL---~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp  205 (405)
T COG1252         144 EKAS-------QEED--D--RALL----TIVIVGGGPTGVELAGEL---AERLHRLLKKFRVDPSELRVILVEAGPRILP  205 (405)
T ss_pred             HHhh-------cccc--c--ccee----EEEEECCChhHHHHHHHH---HHHHHHHhhhhcCCccccEEEEEccCchhcc
Confidence            2110       0000  0  0000    112344444444444431   2222233332 23334789999999999998


Q ss_pred             --chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCce-EEeecEEEECCCCCchhhhhc-CCC-CCCCCce
Q psy8791         265 --SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTE-RLPYAIMHVTPPMGPVPELAT-SRL-VDQSGYV  339 (706)
Q Consensus       265 --~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~-~i~~D~vI~a~G~~~~~~~~~-~~l-~~~~G~i  339 (706)
                        ++++++++++.|+++||++++++.|+++++++  +++.   +|+ ++++|++|||+|+++++++.+ +++ .|..|++
T Consensus       206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~--v~~~---~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl  280 (405)
T COG1252         206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG--VTLK---DGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRL  280 (405)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc--EEEc---cCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCE
Confidence              89999999999999999999999999999877  6654   555 599999999999999999999 577 5778999


Q ss_pred             eeCccccccCCCCCEEEccccCCCCC----CchHHHHHHhHHHHHHHHHHHHcCCCC-CCcccceeeEEEEecCCeEEEE
Q psy8791         340 NVDKATLQHVKYSNVFAIGDCSNLPT----SKTAAAVAGQCKVVYDNLSAVMKNRAL-PHEYNGYTSCPLVTGYSKCVMA  414 (706)
Q Consensus       340 ~vd~~~l~~~~~~~Ifa~GD~~~~~~----~~~~~~a~~qg~~~a~ni~~~l~g~~~-~~~~~~~~~~~~~~G~~~~~~~  414 (706)
                      .||+ +||++++|||||+|||+..+.    |++++.|.+||+++|+||.+.++|+++ +++|..+++++ ++|.+.+++.
T Consensus       281 ~V~~-~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~Gtl~-~lG~~~av~~  358 (405)
T COG1252         281 VVNP-TLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDKGTLA-SLGDFSAVAD  358 (405)
T ss_pred             EeCC-CcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccceEEEE-EccCCceeEE
Confidence            9999 899999999999999998864    799999999999999999999999888 88999888766 9999998854


Q ss_pred             E
Q psy8791         415 E  415 (706)
Q Consensus       415 ~  415 (706)
                      .
T Consensus       359 ~  359 (405)
T COG1252         359 L  359 (405)
T ss_pred             e
Confidence            4

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=362.49  Aligned_cols=351  Identities=17%  Similarity=0.256  Sum_probs=262.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEEceeEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVS  107 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~v~~  107 (706)
                      .+++|||||||+||+.+|..|.+.  +++|||||++++++|.|+++.+..+....+.+..++...+. .+++|+.++|++
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~--~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~   86 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPK--KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYD   86 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcC--CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEE
Confidence            457999999999999999999765  78999999999999999999988888877777777766554 689999999999


Q ss_pred             EEcCCCEEEe----------CCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccC
Q psy8791         108 FDPENNRVRT----------QAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRR  177 (706)
Q Consensus       108 id~~~~~v~~----------~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (706)
                      ||++++.|.+          .+|.+++||+||+|||+.+..+.+||.+  ||+                ++.+       
T Consensus        87 Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~--e~~----------------~~~~-------  141 (424)
T PTZ00318         87 VDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVE--ERA----------------FFLK-------  141 (424)
T ss_pred             EEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHH--HcC----------------CCCC-------
Confidence            9999999888          4667899999999999999999999932  222                1122       


Q ss_pred             ccchhhhhcCCCCCcccCCChhHHHHHHHHHHhc-cCCC---E-E--EecCCCCeeeCChhH--HHHHHHHHHHHHc---
Q psy8791         178 PSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF-QSGP---V-L--YTFPATPIKCGGAPM--KAVLIGDEYLRKH---  245 (706)
Q Consensus       178 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~g~---~-v--v~~~~~~v~~~g~~~--~~~~~~~~~l~~~---  245 (706)
                                         +...+..+++.+... ....   . .  .......+.++|++.  |.+....+++++.   
T Consensus       142 -------------------~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~  202 (424)
T PTZ00318        142 -------------------EVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN  202 (424)
T ss_pred             -------------------CHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence                               222223333322211 0000   0 0  000001122344432  4444444444332   


Q ss_pred             ---CCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCC
Q psy8791         246 ---KKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPP  320 (706)
Q Consensus       246 ---g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G  320 (706)
                         +.....+|+++++.+.+++  ++.+.+.+++.|+++||+++++++|.+++.+.  +++   ++|+++++|++||++|
T Consensus       203 ~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~--v~~---~~g~~i~~d~vi~~~G  277 (424)
T PTZ00318        203 LNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKE--VVL---KDGEVIPTGLVVWSTG  277 (424)
T ss_pred             hhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCCE--EEE---CCCCEEEccEEEEccC
Confidence               1224568999999988876  67889999999999999999999999998653  554   3788999999999999


Q ss_pred             CCchhhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCC---CCchHHHHHHhHHHHHHHHHHHHcCCC-C-CC
Q psy8791         321 MGPVPELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP---TSKTAAAVAGQCKVVYDNLSAVMKNRA-L-PH  394 (706)
Q Consensus       321 ~~~~~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~---~~~~~~~a~~qg~~~a~ni~~~l~g~~-~-~~  394 (706)
                      .+|++++..+++ .+++|+|.||+ +||.+++|||||+|||+..+   .|++++.|++||+++|+||.+.+.|++ + ++
T Consensus       278 ~~~~~~~~~~~l~~~~~G~I~Vd~-~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~  356 (424)
T PTZ00318        278 VGPGPLTKQLKVDKTSRGRISVDD-HLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSKPF  356 (424)
T ss_pred             CCCcchhhhcCCcccCCCcEEeCC-CcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            999998888887 67789999999 79989999999999999863   467899999999999999999999986 3 66


Q ss_pred             cccceeeEEEEecCCeEEEEEEeCCCCcccCCCCCCCCchhHHHHHHHhh
Q psy8791         395 EYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQV  444 (706)
Q Consensus       395 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  444 (706)
                      .|...+. ++++|.+.|++....        +    ...+++.|++++..
T Consensus       357 ~~~~~g~-~~~lG~~~av~~~~~--------~----~~~g~~a~~~~~~~  393 (424)
T PTZ00318        357 VYRSLGS-LAYLGNYSAIVQLGA--------F----DLSGFKALLFWRSA  393 (424)
T ss_pred             eecCCce-EEEecCCceEEEcCC--------c----eEecHHHHHHHHHH
Confidence            6666654 469999999854321        1    12456677776543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=5.4e-39  Score=344.18  Aligned_cols=347  Identities=21%  Similarity=0.299  Sum_probs=258.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhh-cCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEEceeEEEE
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSK-LGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFD  109 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~-~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~v~~id  109 (706)
                      +|||||||+||+.+|.+|+++ .++++|+|||+++++.|.|.++.+..+..+.+++..++.+++. .+++|+.++|++||
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id   80 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID   80 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence            599999999999999999765 3578999999999999999888776666666777777776655 68999999999999


Q ss_pred             cCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCC
Q psy8791         110 PENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPD  189 (706)
Q Consensus       110 ~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  189 (706)
                      +++++|.+++|+++.||+||+|||+.+..+.+||..  |+.                                       
T Consensus        81 ~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~--~~~---------------------------------------  119 (364)
T TIGR03169        81 PDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAA--DLA---------------------------------------  119 (364)
T ss_pred             cccCEEEECCCCcccccEEEEccCCCCCCCCCCccc--ccc---------------------------------------
Confidence            999999999998999999999999999999999821  111                                       


Q ss_pred             CCcccCCChhHHHHHHHHHHh-c---cCCCEEEecCCCCeeeCCh--hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCC
Q psy8791         190 SGVSTNYSPQYVEKTLRNLQH-F---QSGPVLYTFPATPIKCGGA--PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLF  263 (706)
Q Consensus       190 ~~v~~~~~~~~~~~~~~~l~~-~---~~g~~vv~~~~~~v~~~g~--~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~  263 (706)
                         ....+.+.+...++.+.. +   .+++.+       +.++|+  +.|.+..+..++++.+.+  .+|+++ ..+.++
T Consensus       120 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-------vVvG~G~~g~E~A~~l~~~~~~~g~~--~~V~li-~~~~~l  186 (364)
T TIGR03169       120 ---VPVKPIENFLARWEALLESADAPPGTKRL-------AVVGGGAAGVEIALALRRRLPKRGLR--GQVTLI-AGASLL  186 (364)
T ss_pred             ---cccCCHHHHHHHHHHHHHHHhcCCCCceE-------EEECCCHHHHHHHHHHHHHHHhcCCC--ceEEEE-eCCccc
Confidence               111222333333332321 1   122222       122333  345555555556556532  357888 445555


Q ss_pred             C--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC-CCCCCcee
Q psy8791         264 P--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL-VDQSGYVN  340 (706)
Q Consensus       264 ~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l-~~~~G~i~  340 (706)
                      +  ++.+.+.+++.|+++||++++++.+.+++.+  .+.+   ++|+++++|.+|+|+|.+|++++..+++ .+++|++.
T Consensus       187 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~---~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~  261 (364)
T TIGR03169       187 PGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG--ALIL---ADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLR  261 (364)
T ss_pred             ccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC--eEEe---CCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEE
Confidence            4  5778889999999999999999999999754  3444   3788999999999999999998888877 67789999


Q ss_pred             eCccccccCCCCCEEEccccCCCC---CCchHHHHHHhHHHHHHHHHHHHcCCCC-CCcccceeeEEEEecCCeEEEEEE
Q psy8791         341 VDKATLQHVKYSNVFAIGDCSNLP---TSKTAAAVAGQCKVVYDNLSAVMKNRAL-PHEYNGYTSCPLVTGYSKCVMAEF  416 (706)
Q Consensus       341 vd~~~l~~~~~~~Ifa~GD~~~~~---~~~~~~~a~~qg~~~a~ni~~~l~g~~~-~~~~~~~~~~~~~~G~~~~~~~~~  416 (706)
                      ||+ ++|.+++|||||+|||+..+   .++.+..|.+||+++|+||.+.+.|+++ ++.+.....|++++|.+.+++...
T Consensus       262 vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~~~~~~~~~~~~~G~~~~v~~~~  340 (364)
T TIGR03169       262 VDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPLRPFRPQRDYLQLLNTGDRRAVASWG  340 (364)
T ss_pred             ECC-ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCCcccccceeEEEcCCCcEEEeec
Confidence            999 79977999999999999753   4678889999999999999999999876 332222356889999999874221


Q ss_pred             eCCCCcccCCCCCCCCchhHHHHHHHhhchHHHH
Q psy8791         417 DYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYW  450 (706)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~y~  450 (706)
                         +     +    ..++++.|++|..+..++.|
T Consensus       341 ---~-----~----~~~~~~~~~~k~~~~~~~~~  362 (364)
T TIGR03169       341 ---W-----I----IGPGRWLWRLKDWIDRRFMR  362 (364)
T ss_pred             ---c-----e----eecCccHHHHHHHHhHHHHh
Confidence               1     1    12456788888755544333

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2495|consensus

Probab=100.00  E-value=5e-36  Score=300.55  Aligned_cols=349  Identities=20%  Similarity=0.344  Sum_probs=266.4

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC---CCcEEEE
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP---SGATWVK  102 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~  102 (706)
                      +...+++|||+|.|.+|.+.+..|...  .++|++|+|++||.|.|++|....|.....++..|...+.+   .+++|.+
T Consensus        51 ~~~kKk~vVVLGsGW~a~S~lk~ldts--~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e  128 (491)
T KOG2495|consen   51 NGGKKKRVVVLGSGWGAISLLKKLDTS--LYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE  128 (491)
T ss_pred             CCCCCceEEEEcCchHHHHHHHhcccc--ccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe
Confidence            334568999999999999999999877  79999999999999999999999999999999999888776   3788999


Q ss_pred             ceeEEEEcCCCEEEeC----CC----eEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCcccccc
Q psy8791         103 DKIVSFDPENNRVRTQ----AG----SEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDF  174 (706)
Q Consensus       103 ~~v~~id~~~~~v~~~----~g----~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (706)
                      ++.+.||++++.|..+    ++    ..+.|||||+|+|+.++.+++||+.  ||+    .|+           .+..++
T Consensus       129 Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~--e~~----~FL-----------KEv~dA  191 (491)
T KOG2495|consen  129 AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVE--ENA----HFL-----------KEVEDA  191 (491)
T ss_pred             cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchh--hch----hhh-----------hhhhHH
Confidence            9999999999987764    33    4689999999999999999999964  544    333           233345


Q ss_pred             ccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHc--CCCCCcE
Q psy8791         175 LRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKH--KKRDAAK  252 (706)
Q Consensus       175 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~--g~~~~~~  252 (706)
                      +++++.+.+.+....  .     +.--+..++++..+    +||++|+++++.++....   -..+-+++.  ...++++
T Consensus       192 qeIR~~~~~~le~a~--~-----~~l~~eerkRlLh~----VVVGGGPTGVEFAaEL~D---fi~~Dl~k~yp~l~~~i~  257 (491)
T KOG2495|consen  192 QEIRRKVIDNLEKAE--L-----PGLSDEERKRLLHF----VVVGGGPTGVEFAAELAD---FIPEDLRKIYPELKKDIK  257 (491)
T ss_pred             HHHHHHHHHHHHHhh--c-----CCCChHHhhheEEE----EEECCCCcceeehHHHHH---HHHHHHHHhhhcchhheE
Confidence            565555555554431  1     11112344555555    366777777777654221   111122222  2457789


Q ss_pred             EEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc--eEEeecEEEECCCCCchhhhh
Q psy8791         253 LTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT--ERLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       253 v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g--~~i~~D~vI~a~G~~~~~~~~  328 (706)
                      |++++..+.+++  ++.+.+++++.+.+.||++++++.|..++++.  +...+. +|  +++|+-+++|+||..|.+...
T Consensus       258 vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~--I~~~~~-~g~~~~iPYG~lVWatG~~~rp~~k  334 (491)
T KOG2495|consen  258 VTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT--IHAKTK-DGEIEEIPYGLLVWATGNGPRPVIK  334 (491)
T ss_pred             EEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE--EEEEcC-CCceeeecceEEEecCCCCCchhhh
Confidence            999999999987  78899999999999999999999999998765  555433 34  689999999999999998877


Q ss_pred             cCCC-CCCCC--ceeeCccccccCCCCCEEEccccCCCC-CCchHHHHHHhHHHHHHHHHHHHcCCC-------------
Q psy8791         329 TSRL-VDQSG--YVNVDKATLQHVKYSNVFAIGDCSNLP-TSKTAAAVAGQCKVVYDNLSAVMKNRA-------------  391 (706)
Q Consensus       329 ~~~l-~~~~G--~i~vd~~~l~~~~~~~Ifa~GD~~~~~-~~~~~~~a~~qg~~~a~ni~~~l~g~~-------------  391 (706)
                      ..-. .++.|  .+.||+ .||+++.+||||+|||+..+ .+++++.|.+||+++|+|+..+.++..             
T Consensus       335 ~lm~~i~e~~rr~L~vDE-~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~  413 (491)
T KOG2495|consen  335 DLMKQIDEQGRRGLAVDE-WLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEG  413 (491)
T ss_pred             hHhhcCCccCceeeeeec-eeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhh
Confidence            6532 44445  799999 79999999999999999554 355999999999999999988765321             


Q ss_pred             ----CCCcccceeeEEEEecCCeEE
Q psy8791         392 ----LPHEYNGYTSCPLVTGYSKCV  412 (706)
Q Consensus       392 ----~~~~~~~~~~~~~~~G~~~~~  412 (706)
                          .|++|+..+... ++|...++
T Consensus       414 ~~~f~PF~Y~H~GalA-~lG~ekai  437 (491)
T KOG2495|consen  414 RHQFKPFKYKHLGALA-YLGREKAI  437 (491)
T ss_pred             hhccCCccccccccee-eccccchh
Confidence                245566655544 88888877

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=8.7e-32  Score=296.26  Aligned_cols=293  Identities=20%  Similarity=0.231  Sum_probs=214.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCccccC-cc-cccccccccCCCcEEEE-ceeE
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKL-SD-SRRPMKSVLPSGATWVK-DKIV  106 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~~~~-~~-~~~~~~~~~~~~v~~i~-~~v~  106 (706)
                      ++|||||||+||++||..|++..++.+|||||+++++.|.| .+++...+.... +. +......+...++++.. ++|+
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            47999999999999999999986668999999999988875 455554443222 22 22333444457899864 7999


Q ss_pred             EEEcCCCEEEeCC---CeEEE--ecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccch
Q psy8791         107 SFDPENNRVRTQA---GSEIS--YEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGL  181 (706)
Q Consensus       107 ~id~~~~~v~~~~---g~~~~--yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (706)
                      +||++++.|.+.+   +..+.  ||+||+|||+.+..|++||.+                                   .
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~-----------------------------------~  125 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNIN-----------------------------------L  125 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcC-----------------------------------C
Confidence            9999999888764   55666  999999999999888888831                                   0


Q ss_pred             hhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc
Q psy8791         182 QEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV  261 (706)
Q Consensus       182 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~  261 (706)
                            .  .+.+..+...+.++.+.+......++++        ++|++.  +......+++.|.    +|++++..+.
T Consensus       126 ------~--~v~~~~~~~~~~~l~~~l~~~~~~~vvV--------vGgG~~--g~e~A~~l~~~g~----~Vtli~~~~~  183 (444)
T PRK09564        126 ------E--NVYTLKSMEDGLALKELLKDEEIKNIVI--------IGAGFI--GLEAVEAAKHLGK----NVRIIQLEDR  183 (444)
T ss_pred             ------C--CEEEECCHHHHHHHHHHHhhcCCCEEEE--------ECCCHH--HHHHHHHHHhcCC----cEEEEeCCcc
Confidence                  0  1222233344445555554433333322        333332  2223335666664    4889998887


Q ss_pred             CCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCC
Q psy8791         262 LFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQS  336 (706)
Q Consensus       262 ~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~  336 (706)
                      +++   ++++.+.+++.|+++||++++++++.+++.+++ +....+ ++.++++|.+|+|+|.+|+ ++++++++ .+++
T Consensus       184 ~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~  261 (444)
T PRK09564        184 ILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK-VEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTGLKTLKN  261 (444)
T ss_pred             cCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCc-EEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcCccccCC
Confidence            764   578889999999999999999999999976544 322223 4457999999999999998 67777888 6778


Q ss_pred             CceeeCccccccCCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         337 GYVNVDKATLQHVKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       337 G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+|.||+ +++ |++|||||+|||+..+.        +++++.|..||+++|+||.
T Consensus       262 g~i~vd~-~~~-t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~  315 (444)
T PRK09564        262 GAIIVDE-YGE-TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA  315 (444)
T ss_pred             CCEEECC-Ccc-cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence            9999999 688 79999999999997532        4678899999999999995

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=4.5e-32  Score=296.27  Aligned_cols=288  Identities=16%  Similarity=0.160  Sum_probs=210.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCccccCcc--cccccccccC-CCcEEEE-ce
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKLSD--SRRPMKSVLP-SGATWVK-DK  104 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~~~~~~--~~~~~~~~~~-~~v~~i~-~~  104 (706)
                      +++|||||||+||++||..|++..++++|+|||+++++.|.+ ++++...+......  +..+.+.+.. .++++.. ++
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~   80 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE   80 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence            358999999999999999999877789999999999988885 66766544433222  2222234433 6899865 89


Q ss_pred             eEEEEcCCCEEEeCCC---e--EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCcc
Q psy8791         105 IVSFDPENNRVRTQAG---S--EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPS  179 (706)
Q Consensus       105 v~~id~~~~~v~~~~g---~--~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (706)
                      |++||+++++|.+.++   .  ++.||+||||||+.+..|++++    +                               
T Consensus        81 V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~----~-------------------------------  125 (438)
T PRK13512         81 VIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFES----D-------------------------------  125 (438)
T ss_pred             EEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCC----C-------------------------------
Confidence            9999999999888653   2  4689999999999987665543    0                               


Q ss_pred             chhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC
Q psy8791         180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM  259 (706)
Q Consensus       180 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~  259 (706)
                                 .+....+...+..+.+.+......+++        .++|+..  +......+++.|.    +|+++++.
T Consensus       126 -----------~~~~~~~~~~~~~l~~~l~~~~~~~vv--------ViGgG~i--g~E~A~~l~~~g~----~Vtli~~~  180 (438)
T PRK13512        126 -----------ITFTLRNLEDTDAIDQFIKANQVDKAL--------VVGAGYI--SLEVLENLYERGL----HPTLIHRS  180 (438)
T ss_pred             -----------CeEEecCHHHHHHHHHHHhhcCCCEEE--------EECCCHH--HHHHHHHHHhCCC----cEEEEecc
Confidence                       111122233344444444333222222        2333322  2223345666664    49999998


Q ss_pred             CcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCC
Q psy8791         260 GVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQ  335 (706)
Q Consensus       260 ~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~  335 (706)
                      +.+++  ++++.+.+++.|+++||+++++++|.+++..  .+++   ++|+++++|.|++|+|.+|| +++.+.++ .++
T Consensus       181 ~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~--~v~~---~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~  255 (438)
T PRK13512        181 DKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGN--EVTF---KSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDD  255 (438)
T ss_pred             cccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC--EEEE---CCCCEEEeCEEEECcCCCcChHHHHhcCcccCC
Confidence            88775  6788999999999999999999999999753  3544   36778999999999999999 56777787 677


Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCC--------CCchHHHHHHhHHHHHHHHH
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLP--------TSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~--------~~~~~~~a~~qg~~~a~ni~  384 (706)
                      +|++.||+ ++| |++|||||+|||+..+        .+++++.|..||+++|+||.
T Consensus       256 ~G~i~Vd~-~~~-t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~  310 (438)
T PRK13512        256 KGFIPVND-KFE-TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA  310 (438)
T ss_pred             CCcEEECC-Ccc-cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence            89999999 688 8999999999998632        23567789999999999994

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=8.4e-31  Score=302.56  Aligned_cols=293  Identities=15%  Similarity=0.209  Sum_probs=217.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhc--CCCeEEEEcCCCCcccCcc-cccccCccccCccccccccccc-CCCcEEEEc-e
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKL--GKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD-K  104 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~--~~~~Vtlie~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~-~  104 (706)
                      +++|||||||+||+++|..|+++.  ++++||||++++++.|.+. ++....+ ...+++.....+++ ..+++++.+ +
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~   81 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGER   81 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCE
Confidence            358999999999999999998763  4689999999999887754 4444333 23444444444433 479999885 6


Q ss_pred             eEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         105 IVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       105 v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      |+.||++.+.|.+.+|.++.||+||+|||+.+..|++||.+                 .+                    
T Consensus        82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~-----------------~~--------------------  124 (847)
T PRK14989         82 AITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSE-----------------TQ--------------------  124 (847)
T ss_pred             EEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCC-----------------CC--------------------
Confidence            99999999999999998999999999999999999999932                 00                    


Q ss_pred             hcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP  264 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~  264 (706)
                            .+....+.+.+..+.+.+..   ++       ..++++|+..  +..++..+++.|.    +|++++..+.+++
T Consensus       125 ------~v~~~rt~~d~~~l~~~~~~---~k-------~vvVIGgG~i--GlE~A~~L~~~G~----~VtvVe~~~~ll~  182 (847)
T PRK14989        125 ------DCFVYRTIEDLNAIEACARR---SK-------RGAVVGGGLL--GLEAAGALKNLGV----ETHVIEFAPMLMA  182 (847)
T ss_pred             ------CeEEECCHHHHHHHHHHHhc---CC-------eEEEECCCHH--HHHHHHHHHHcCC----eEEEEeccccchh
Confidence                  11112233344444333221   11       1233444432  3333455666764    4999999988775


Q ss_pred             ---chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEEEEEeCCCceEEeecEEEECCCCCchhhh-hcCCC-CCCCCc
Q psy8791         265 ---SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEAVFKSEDKTERLPYAIMHVTPPMGPVPEL-ATSRL-VDQSGY  338 (706)
Q Consensus       265 ---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~-~~~~l-~~~~G~  338 (706)
                         ++...+.+++.|+++||+++++..+++|..++ ..+..+..++|+++++|+||+++|++|++.+ ..+|+ .+++|+
T Consensus       183 ~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~  262 (847)
T PRK14989        183 EQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGG  262 (847)
T ss_pred             hhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCc
Confidence               67888999999999999999999999997542 2222233458899999999999999999654 45788 688899


Q ss_pred             eeeCccccccCCCCCEEEccccCCCCCC--chHHHHHHhHHHHHHHHH
Q psy8791         339 VNVDKATLQHVKYSNVFAIGDCSNLPTS--KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       339 i~vd~~~l~~~~~~~Ifa~GD~~~~~~~--~~~~~a~~qg~~~a~ni~  384 (706)
                      |.||+ ++| |+.|||||+|||+..+..  .++..|..||+++|+||.
T Consensus       263 I~VD~-~l~-Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~  308 (847)
T PRK14989        263 IVIND-SCQ-TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLL  308 (847)
T ss_pred             EEECC-CCc-CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhc
Confidence            99999 688 899999999999987543  367789999999999994

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=1.2e-30  Score=280.43  Aligned_cols=288  Identities=15%  Similarity=0.230  Sum_probs=209.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc-CcccccccCccccCccccc-cccccc-CCCcEEEE-ceeE
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY-QPMFTLIGGGMKKLSDSRR-PMKSVL-PSGATWVK-DKIV  106 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~-~p~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~~i~-~~v~  106 (706)
                      ++|||||||+||+++|..|++..++.+||||++++++.| .|.++....+....+++.. ...++. ..+++++. ++|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            589999999999999999999877889999999998666 5666655544444444443 344443 36899885 6899


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                      ++|++++.+.+ ++.++.||+||+|||+.+..|++||.+   +                                     
T Consensus        83 ~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~---~-------------------------------------  121 (377)
T PRK04965         83 DIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRE---L-------------------------------------  121 (377)
T ss_pred             EEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCc---e-------------------------------------
Confidence            99999888886 456899999999999999988999832   0                                     


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--  264 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--  264 (706)
                           +....+...+......+.   .++.+       +.++|++.  ++.....+.+.+.    +|+++++.+.+++  
T Consensus       122 -----v~~~~~~~~~~~~~~~~~---~~~~v-------vViGgG~~--g~e~A~~L~~~g~----~Vtlv~~~~~~l~~~  180 (377)
T PRK04965        122 -----MLTLNSQQEYRAAETQLR---DAQRV-------LVVGGGLI--GTELAMDLCRAGK----AVTLVDNAASLLASL  180 (377)
T ss_pred             -----EEEECCHHHHHHHHHHhh---cCCeE-------EEECCCHH--HHHHHHHHHhcCC----eEEEEecCCcccchh
Confidence                 011111222222222221   12112       22344432  2223334555553    5999999888764  


Q ss_pred             -chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCCCCCCCceeeC
Q psy8791         265 -SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRLVDQSGYVNVD  342 (706)
Q Consensus       265 -~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l~~~~G~i~vd  342 (706)
                       ++.+...+++.|++.||++++++.+.+++.+++.+.+ .+++|+++++|++|+|+|.+|+. ++..+++..++| +.||
T Consensus       181 ~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v-~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~g-i~vd  258 (377)
T PRK04965        181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRA-TLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG-IVVD  258 (377)
T ss_pred             CCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEE-EEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCC-EEEC
Confidence             5678889999999999999999999999876554433 34578899999999999999995 455678855556 9999


Q ss_pred             ccccccCCCCCEEEccccCCCCCC--chHHHHHHhHHHHHHHHH
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTS--KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~--~~~~~a~~qg~~~a~ni~  384 (706)
                      + +++ |+.|||||+|||+..+..  ..++.|..||+.+|+||.
T Consensus       259 ~-~l~-ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~  300 (377)
T PRK04965        259 S-YLQ-TSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL  300 (377)
T ss_pred             C-Ccc-cCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc
Confidence            9 788 789999999999986532  356678999999999994

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.8e-30  Score=280.62  Aligned_cols=291  Identities=12%  Similarity=0.100  Sum_probs=207.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-ccccc-ccCccccCcccccccccccCCCcEEEEc-eeE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFTL-IGGGMKKLSDSRRPMKSVLPSGATWVKD-KIV  106 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~v~  106 (706)
                      .++|||||||+||++||..|+++.+..+|+||++++++.|. |.++. +..+.........+...+...+++++.+ +|+
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            35899999999999999999998556699999999987764 44432 2222211111222333344578999876 689


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                      .+|++++.|.+++|.++.||+||+|||+.++.+++++..    .             +                      
T Consensus        83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~----~-------------~----------------------  123 (396)
T PRK09754         83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDAL----G-------------E----------------------  123 (396)
T ss_pred             EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcC----C-------------C----------------------
Confidence            999999999999998999999999999998776665510    0             0                      


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--  264 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--  264 (706)
                          .+....+.+++..+.+.+.   .++.+       +.++|+..  +......+++.|.    +|+++++.+.+++  
T Consensus       124 ----~v~~~~~~~da~~l~~~~~---~~~~v-------vViGgG~i--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        124 ----RCFTLRHAGDAARLREVLQ---PERSV-------VIVGAGTI--GLELAASATQRRC----KVTVIELAATVMGRN  183 (396)
T ss_pred             ----CEEecCCHHHHHHHHHHhh---cCCeE-------EEECCCHH--HHHHHHHHHHcCC----eEEEEecCCcchhhh
Confidence                2222233444444444332   22222       22333322  2233344566654    4999999888764  


Q ss_pred             -chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh-hhcCCCCCCCCceeeC
Q psy8791         265 -SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE-LATSRLVDQSGYVNVD  342 (706)
Q Consensus       265 -~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~-~~~~~l~~~~G~i~vd  342 (706)
                       ++.+.+.+.+.+++.||++++++.+++++.+ +.+.+ .+.+|+++++|++|+++|.+|++. +...++..+ |.|.||
T Consensus       184 ~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~~v-~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd  260 (396)
T PRK09754        184 APPPVQRYLLQRHQQAGVRILLNNAIEHVVDG-EKVEL-TLQSGETLQADVVIYGIGISANDQLAREANLDTA-NGIVID  260 (396)
T ss_pred             cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcC-CEEEE-EECCCCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEEC
Confidence             5678888999999999999999999999863 33333 345788999999999999999964 455677443 559999


Q ss_pred             ccccccCCCCCEEEccccCCCCCC-------chHHHHHHhHHHHHHHHH
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTS-------KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~-------~~~~~a~~qg~~~a~ni~  384 (706)
                      + +++ |+.|||||+|||+..+.+       .++..|..||+++|+||.
T Consensus       261 ~-~~~-ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~  307 (396)
T PRK09754        261 E-ACR-TCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAML  307 (396)
T ss_pred             C-CCc-cCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhc
Confidence            9 688 799999999999975432       357889999999999995

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.97  E-value=9.5e-30  Score=294.75  Aligned_cols=289  Identities=19%  Similarity=0.227  Sum_probs=217.3

Q ss_pred             EEEECCCHHHHHHHHHHHhhc-CCCeEEEEcCCCCcccC-cccccccCccccCccccccccccc-CCCcEEEEc-eeEEE
Q psy8791          33 LLVVGGGAAGCSMAAKFTSKL-GKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD-KIVSF  108 (706)
Q Consensus        33 VvIIGgG~aGl~aA~~L~~~~-~~~~Vtlie~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~-~v~~i  108 (706)
                      |||||||+||++||..|++.. .+++|||||+++++.|. +.++.+..+..+.+++..+..+++ ..+++++.+ +|+.|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            699999999999999998874 46899999999998776 446666555556666666555544 479999875 89999


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCC
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQP  188 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  188 (706)
                      |+++++|.+.+|.++.||+||+|||+.+..|++||.+                                   .      +
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~-----------------------------------~------~  119 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGAD-----------------------------------K------K  119 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCC-----------------------------------C------C
Confidence            9999999999998999999999999999999999932                                   0      0


Q ss_pred             CCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC---c
Q psy8791         189 DSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP---S  265 (706)
Q Consensus       189 ~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~---~  265 (706)
                        .+....+.+.+..+.+.+..   ++.       .++++|+..  +..++..+++.|.    +|++++..+.+++   +
T Consensus       120 --~v~~~rt~~d~~~i~~~~~~---~k~-------vvVVGgG~~--GlE~A~~L~~~G~----~Vtvv~~~~~ll~~~ld  181 (785)
T TIGR02374       120 --GVYVFRTIEDLDAIMAMAQR---FKK-------AAVIGGGLL--GLEAAVGLQNLGM----DVSVIHHAPGLMAKQLD  181 (785)
T ss_pred             --CEEEeCCHHHHHHHHHHhhc---CCe-------EEEECCCHH--HHHHHHHHHhcCC----eEEEEccCCchhhhhcC
Confidence              12222233344444333321   111       233444422  3334456777774    4899999888874   5


Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhh-hcCCCCCCCCceeeCcc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPEL-ATSRLVDQSGYVNVDKA  344 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~-~~~~l~~~~G~i~vd~~  344 (706)
                      +...+.+++.|+++||++++++.+.++..++. +..+.+++|+++++|+||+++|++|+..+ ..+++... |.|.||+ 
T Consensus       182 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~-  258 (785)
T TIGR02374       182 QTAGRLLQRELEQKGLTFLLEKDTVEIVGATK-ADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVND-  258 (785)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCc-eEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECC-
Confidence            77888899999999999999999999986543 22233457889999999999999999655 45677333 6699999 


Q ss_pred             ccccCCCCCEEEccccCCCCCC--chHHHHHHhHHHHHHHHH
Q psy8791         345 TLQHVKYSNVFAIGDCSNLPTS--KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       345 ~l~~~~~~~Ifa~GD~~~~~~~--~~~~~a~~qg~~~a~ni~  384 (706)
                      ++| |+.|||||+|||+..+..  ..+..|..||+++|.||.
T Consensus       259 ~~~-Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~  299 (785)
T TIGR02374       259 SMQ-TSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHIC  299 (785)
T ss_pred             Ccc-cCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhc
Confidence            788 899999999999987543  356778999999999995

>PLN02507 glutathione reductase

Probab=99.97  E-value=1.8e-28  Score=270.80  Aligned_cols=295  Identities=16%  Similarity=0.200  Sum_probs=204.8

Q ss_pred             ccccccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC---------CCcccCccc----c---cc-c-
Q psy8791          16 SSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT---------DDHYYQPMF----T---LI-G-   77 (706)
Q Consensus        16 ~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~---------~~~~~~p~~----~---~~-~-   77 (706)
                      .++.++........++||+|||||+||+.||.+++++  |.+|+|||++         +.+...|..    |   .+ . 
T Consensus        11 ~~~~~~~~~~~~~~~yDvvVIG~GpaG~~aA~~a~~~--G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a   88 (499)
T PLN02507         11 VAKVNADEANATHYDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGA   88 (499)
T ss_pred             hhhHhhhhhcccccccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHH
Confidence            3455555433334568999999999999999999999  8999999962         222222211    1   00 0 


Q ss_pred             -----------CccccCcccccccc------------------ccc-CCCcEEEEceeEEEEcCCCEEEeCCCe--EEEe
Q psy8791          78 -----------GGMKKLSDSRRPMK------------------SVL-PSGATWVKDKIVSFDPENNRVRTQAGS--EISY  125 (706)
Q Consensus        78 -----------~~~~~~~~~~~~~~------------------~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~--~~~y  125 (706)
                                 .+.........++.                  .++ ..+++++.+++..+|+....|.+.+|+  ++.|
T Consensus        89 ~~~~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~  168 (499)
T PLN02507         89 TFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTA  168 (499)
T ss_pred             HHHHHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEc
Confidence                       00000000011111                  122 268999999999999987788877775  5789


Q ss_pred             cEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHH
Q psy8791         126 EYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTL  205 (706)
Q Consensus       126 d~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~  205 (706)
                      |+||||||+.+..|.+||.+                                     ..           .+.+.+..  
T Consensus       169 d~LIIATGs~p~~p~ipG~~-------------------------------------~~-----------~~~~~~~~--  198 (499)
T PLN02507        169 KHILIATGSRAQRPNIPGKE-------------------------------------LA-----------ITSDEALS--  198 (499)
T ss_pred             CEEEEecCCCCCCCCCCCcc-------------------------------------ce-----------echHHhhh--
Confidence            99999999999988899821                                     00           01111111  


Q ss_pred             HHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceE
Q psy8791         206 RNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDV  283 (706)
Q Consensus       206 ~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v  283 (706)
                        +..+.+ ++        +.++|+..  ++.....+.+.|.    +|+++++.+.+++  ++++.+.+++.|+++||++
T Consensus       199 --l~~~~k-~v--------vVIGgG~i--g~E~A~~l~~~G~----~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i  261 (499)
T PLN02507        199 --LEELPK-RA--------VVLGGGYI--AVEFASIWRGMGA----TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINL  261 (499)
T ss_pred             --hhhcCC-eE--------EEECCcHH--HHHHHHHHHHcCC----eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEE
Confidence              111211 11        22334422  2222344566664    4999999888765  6888999999999999999


Q ss_pred             EcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccc
Q psy8791         284 HKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGD  359 (706)
Q Consensus       284 ~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD  359 (706)
                      ++++.|++++.+++.+.+. +++|+++++|.|++++|++|+..   +.+.++ .+++|+|.||+ ++| |+.|||||+||
T Consensus       262 ~~~~~V~~i~~~~~~~~v~-~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~-~~~-Ts~p~IyAiGD  338 (499)
T PLN02507        262 HPRTNLTQLTKTEGGIKVI-TDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE-YSR-TNIPSIWAIGD  338 (499)
T ss_pred             EeCCEEEEEEEeCCeEEEE-ECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC-CCc-CCCCCEEEeeE
Confidence            9999999998654445443 34678899999999999999954   456677 67889999999 688 89999999999


Q ss_pred             cCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         360 CSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       360 ~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+..  +.++..|.+||+++|+||.
T Consensus       339 v~~~--~~l~~~A~~qg~~aa~ni~  361 (499)
T PLN02507        339 VTNR--INLTPVALMEGTCFAKTVF  361 (499)
T ss_pred             cCCC--CccHHHHHHHHHHHHHHHc
Confidence            9975  3478899999999999984

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.96  E-value=5.2e-28  Score=265.14  Aligned_cols=279  Identities=14%  Similarity=0.172  Sum_probs=193.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccc-c-------------------Ccc-ccC-----
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLI-G-------------------GGM-KKL-----   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~-~-------------------~~~-~~~-----   83 (706)
                      ++||+|||||+||++||.+++++  |.+|+|||++. ....+....+ +                   .+. ...     
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH--GAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW   78 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence            57999999999999999999999  99999999853 2222111000 0                   000 000     


Q ss_pred             c-----------cccccccc-ccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCccccccc
Q psy8791          84 S-----------DSRRPMKS-VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINAL  151 (706)
Q Consensus        84 ~-----------~~~~~~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~  151 (706)
                      .           .+...+.. +...+++++.+++..+|++...+. .+|.++.||+||+|||+.+..|++||.+   +. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i~G~~---~~-  153 (446)
T TIGR01424        79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNLPGHE---LG-  153 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCCCCcc---ce-
Confidence            0           01111112 223689999999999987643343 4567899999999999999988899821   00 


Q ss_pred             ccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChh
Q psy8791         152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP  231 (706)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~  231 (706)
                                                                  .+.+.+..    +... ..        ..+.++|+.
T Consensus       154 --------------------------------------------~~~~~~~~----l~~~-~~--------~vvVIGgG~  176 (446)
T TIGR01424       154 --------------------------------------------ITSNEAFH----LPTL-PK--------SILILGGGY  176 (446)
T ss_pred             --------------------------------------------echHHhhc----cccc-CC--------eEEEECCcH
Confidence                                                        00011110    0011 11        112234442


Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceE
Q psy8791         232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTER  309 (706)
Q Consensus       232 ~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~  309 (706)
                      .  +......+.+.|.    +|+++++.+.+++  ++++.+.+++.|+++||++++++.+.+++.+++.+.+. ..+|++
T Consensus       177 ~--g~E~A~~l~~~G~----~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~-~~~g~~  249 (446)
T TIGR01424       177 I--AVEFAGIWRGLGV----QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVT-LSHGEE  249 (446)
T ss_pred             H--HHHHHHHHHHcCC----eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE-EcCCcE
Confidence            2  2223344566664    4999999888776  67888899999999999999999999997644434333 336788


Q ss_pred             EeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         310 LPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       310 i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      +++|.+|+|+|.+|+..   +.+.++ .+++|++.||+ ++| |+.|||||+|||+..  +.++..|..||+++|+||.
T Consensus       250 i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~~~-Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~  324 (446)
T TIGR01424       250 IVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDE-YSR-TSIPSIYAVGDVTDR--INLTPVAIMEATCFANTEF  324 (446)
T ss_pred             eecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCC-CCc-cCCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHh
Confidence            99999999999999954   456677 67889999999 688 899999999999975  4588899999999999995

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.96  E-value=1.9e-27  Score=261.01  Aligned_cols=283  Identities=19%  Similarity=0.290  Sum_probs=195.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc-cCc-------ccccccCcc--ccCc-------cccc----
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY-YQP-------MFTLIGGGM--KKLS-------DSRR----   88 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~-~~p-------~~~~~~~~~--~~~~-------~~~~----   88 (706)
                      .+||||||||+||++||.+|+++  +.+|+|||+.+.+. ..+       .........  .+..       .+..    
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~--g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKA--GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN   80 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHC--CCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999998  89999999986422 111       100000000  0000       0000    


Q ss_pred             -ccccccC-CCcEEEEceeEEEEcCCCEEEeCCCe-EEEecEEEEccccccccCCCCCCcccccccccccccccccccCc
Q psy8791          89 -PMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS-EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPL  165 (706)
Q Consensus        89 -~~~~~~~-~~v~~i~~~v~~id~~~~~v~~~~g~-~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  165 (706)
                       ....+.+ .+++++.+++..++.....|.+.++. ++.||+||+|||+.+..|++||.+                    
T Consensus        81 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~--------------------  140 (441)
T PRK08010         81 KNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGIT--------------------  140 (441)
T ss_pred             hHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCcc--------------------
Confidence             0112233 48999999999998866667666774 699999999999999999999931                    


Q ss_pred             cCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHc
Q psy8791         166 FFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKH  245 (706)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~  245 (706)
                                       +.   .  .+   ++...+..    +.... +++        +.++|+..  +......+.+.
T Consensus       141 -----------------~~---~--~v---~~~~~~~~----~~~~~-~~v--------~ViGgG~~--g~E~A~~l~~~  180 (441)
T PRK08010        141 -----------------TT---P--GV---YDSTGLLN----LKELP-GHL--------GILGGGYI--GVEFASMFANF  180 (441)
T ss_pred             -----------------CC---C--CE---EChhHhhc----ccccC-CeE--------EEECCCHH--HHHHHHHHHHC
Confidence                             00   0  01   11111110    11111 111        22334322  22233345556


Q ss_pred             CCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCc
Q psy8791         246 KKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       246 g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      |.    +|+++++.+.+++  ++.+.+.+.+.|+++||++++++.+.+++.+++.+.+. +++ .++++|.+++|+|.+|
T Consensus       181 g~----~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~-~~~-g~i~~D~vl~a~G~~p  254 (441)
T PRK08010        181 GS----KVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVH-SEH-AQLAVDALLIASGRQP  254 (441)
T ss_pred             CC----eEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE-EcC-CeEEeCEEEEeecCCc
Confidence            54    5999999988876  67888999999999999999999999998765555443 223 3589999999999999


Q ss_pred             hhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         324 VPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       324 ~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      |..   +.+.++ .+++|+|.||+ ++| |+.|||||+|||+..+  +.+..|..||+++++||.
T Consensus       255 n~~~l~~~~~gl~~~~~G~i~vd~-~~~-Ts~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~  315 (441)
T PRK08010        255 ATASLHPENAGIAVNERGAIVVDK-YLH-TTADNIWAMGDVTGGL--QFTYISLDDYRIVRDELL  315 (441)
T ss_pred             CCCCcCchhcCcEECCCCcEEECC-Ccc-cCCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHc
Confidence            953   345677 67789999999 687 8999999999999864  578889999999999984

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.96  E-value=6.3e-27  Score=257.74  Aligned_cols=283  Identities=15%  Similarity=0.159  Sum_probs=190.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----cc---c------------cCccccCcccccc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----TL---I------------GGGMKKLSDSRRP   89 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~~---~------------~~~~~~~~~~~~~   89 (706)
                      .++||+|||||+||++||..|+++  |.+|+|||+++.+..++..    |.   +            ............+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADL--GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID   80 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence            468999999999999999999999  8999999997644332210    00   0            0000000011111


Q ss_pred             ccc------------------cc-CCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEcccccccc-CCCCCCccc
Q psy8791          90 MKS------------------VL-PSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYY-DRVKGPSAL  147 (706)
Q Consensus        90 ~~~------------------~~-~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~-~~~~g~~~~  147 (706)
                      +..                  ++ ..+++++++++..+|+..-.|...+|  .++.||+||+|||+.+.. |.+++..  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~--  158 (471)
T PRK06467         81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDD--  158 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCC--
Confidence            111                  11 25899999998877654333444455  478999999999999863 3344410  


Q ss_pred             ccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeee
Q psy8791         148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKC  227 (706)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~  227 (706)
                      +                                          .+   ++...+..    +...         +...+.+
T Consensus       159 ~------------------------------------------~v---~~~~~~~~----~~~~---------~~~vvIi  180 (471)
T PRK06467        159 P------------------------------------------RI---WDSTDALE----LKEV---------PKRLLVM  180 (471)
T ss_pred             C------------------------------------------cE---EChHHhhc----cccC---------CCeEEEE
Confidence            0                                          00   11111111    1111         1122334


Q ss_pred             CChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCC
Q psy8791         228 GGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED  305 (706)
Q Consensus       228 ~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~  305 (706)
                      +|++.  +......+.+.|.    +|+++++.+.+++  ++++.+.+++.|++. |++++++.+++++.+++.+.+...+
T Consensus       181 GgG~i--G~E~A~~l~~~G~----~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~  253 (471)
T PRK06467        181 GGGII--GLEMGTVYHRLGS----EVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEG  253 (471)
T ss_pred             CCCHH--HHHHHHHHHHcCC----CEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEe
Confidence            44432  2223345666664    3999999998887  788899999999988 9999999999998654444432211


Q ss_pred             -C--ceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHH
Q psy8791         306 -K--TERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKV  378 (706)
Q Consensus       306 -~--g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~  378 (706)
                       +  ++++++|.||+++|.+||..   +...++ .+++|+|.||+ ++| |+.|||||+|||+..  |+++..|..||+.
T Consensus       254 ~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~-~~~-t~~p~VyAiGDv~~~--~~la~~A~~eG~~  329 (471)
T PRK06467        254 KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDK-QCR-TNVPHIFAIGDIVGQ--PMLAHKGVHEGHV  329 (471)
T ss_pred             CCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCC-Ccc-cCCCCEEEehhhcCC--cccHHHHHHHHHH
Confidence             2  35799999999999999954   345677 77899999999 688 899999999999875  4588999999999


Q ss_pred             HHHHHH
Q psy8791         379 VYDNLS  384 (706)
Q Consensus       379 ~a~ni~  384 (706)
                      +|.||.
T Consensus       330 aa~~i~  335 (471)
T PRK06467        330 AAEVIA  335 (471)
T ss_pred             HHHHHc
Confidence            999994

>PRK06116 glutathione reductase; Validated

Probab=99.96  E-value=2.9e-27  Score=260.18  Aligned_cols=278  Identities=14%  Similarity=0.199  Sum_probs=193.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c---------------c-c-cCcc------c
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T---------------L-I-GGGM------K   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~---------------~-~-~~~~------~   81 (706)
                      ..+||+|||||+||++||..|+++  |.+|+|||++.. ...+..    |               . . ..+.      .
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~--G~~V~liE~~~~-GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMY--GAKVALIEAKRL-GGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF   79 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccch-hhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence            357999999999999999999999  899999998632 111100    0               0 0 0000      0


Q ss_pred             cCcc-----------ccccccc-ccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCccccc
Q psy8791          82 KLSD-----------SRRPMKS-VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALIN  149 (706)
Q Consensus        82 ~~~~-----------~~~~~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~  149 (706)
                      +...           +...+.. +...+++++.++++.+++  ++|.+ +|.++.||+||+|||+.+..|++||.+   +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~---~  153 (450)
T PRK06116         80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV-NGERYTADHILIATGGRPSIPDIPGAE---Y  153 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcc---e
Confidence            0000           0001111 223689999999988874  56777 677899999999999999988899821   0


Q ss_pred             ccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCC
Q psy8791         150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGG  229 (706)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g  229 (706)
                      .                                             ++.+.+..    +... ..++        +.++|
T Consensus       154 ~---------------------------------------------~~~~~~~~----~~~~-~~~v--------vViGg  175 (450)
T PRK06116        154 G---------------------------------------------ITSDGFFA----LEEL-PKRV--------AVVGA  175 (450)
T ss_pred             e---------------------------------------------EchhHhhC----cccc-CCeE--------EEECC
Confidence            0                                             00000000    0011 1111        22344


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEEEeCCC
Q psy8791         230 APMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVFKSEDK  306 (706)
Q Consensus       230 ~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~~~~~~  306 (706)
                      ++.  +......+.+.|.    +|+++++.+.+++  ++++.+.+++.|+++||++++++.|.+++.+++. +.+. +++
T Consensus       176 G~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~-~~~  248 (450)
T PRK06116        176 GYI--AVEFAGVLNGLGS----ETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLT-LED  248 (450)
T ss_pred             CHH--HHHHHHHHHHcCC----eEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEE-EcC
Confidence            422  2222344566653    4999999887765  6788999999999999999999999999864332 4333 346


Q ss_pred             ceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         307 TERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       307 g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                      |+++++|.||+|+|.+|+..   +...++ .+++|++.||+ ++| |+.|||||+|||+..  ++++..|..||+.+|+|
T Consensus       249 g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~  324 (450)
T PRK06116        249 GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDE-YQN-TNVPGIYAVGDVTGR--VELTPVAIAAGRRLSER  324 (450)
T ss_pred             CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCC-CCC-cCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHH
Confidence            78899999999999999954   455677 67889999999 687 899999999999865  35788999999999999


Q ss_pred             HH
Q psy8791         383 LS  384 (706)
Q Consensus       383 i~  384 (706)
                      |.
T Consensus       325 i~  326 (450)
T PRK06116        325 LF  326 (450)
T ss_pred             Hh
Confidence            95

>KOG1336|consensus

Probab=99.96  E-value=3.3e-27  Score=242.47  Aligned_cols=293  Identities=16%  Similarity=0.206  Sum_probs=216.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc-cccccCccccCccccccccc-ccCCCcEEEE-cee
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKS-VLPSGATWVK-DKI  105 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~-~~v  105 (706)
                      ..+.++|||||++|..|+.+++...+-.+++|+.+..+++|.+. ++....  ...++......+ +...+++++. +.|
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~--~~~~~~a~r~~e~Yke~gIe~~~~t~v  150 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLL--TVGEGLAKRTPEFYKEKGIELILGTSV  150 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhccccee--eccccccccChhhHhhcCceEEEccee
Confidence            35789999999999999999999866678999999998888752 332211  111222222333 3347899887 799


Q ss_pred             EEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         106 VSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                      +.+|...+++.+.+|+.+.|++|+||||+++.++++||.+                 .+                     
T Consensus       151 ~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~-----------------~~---------------------  192 (478)
T KOG1336|consen  151 VKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVE-----------------LK---------------------  192 (478)
T ss_pred             EEeeccccEEEeCCCceeecceEEEeecCccccCCCCCcc-----------------cc---------------------
Confidence            9999999999999999999999999999999999999931                 01                     


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-  264 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-  264 (706)
                           +++...+.+.+..+...+..   +        ..++|.|+.+..++.+++. +.    ....++++++.+.+++ 
T Consensus       193 -----nv~~ireieda~~l~~~~~~---~--------~~vV~vG~G~ig~Evaa~l-~~----~~~~VT~V~~e~~~~~~  251 (478)
T KOG1336|consen  193 -----NVFYLREIEDANRLVAAIQL---G--------GKVVCVGGGFIGMEVAAAL-VS----KAKSVTVVFPEPWLLPR  251 (478)
T ss_pred             -----ceeeeccHHHHHHHHHHhcc---C--------ceEEEECchHHHHHHHHHH-Hh----cCceEEEEccCccchhh
Confidence                 23333333333333333222   2        2244666644444443332 22    2446999999988876 


Q ss_pred             --chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC-CCCCCcee
Q psy8791         265 --SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL-VDQSGYVN  340 (706)
Q Consensus       265 --~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l-~~~~G~i~  340 (706)
                        .+.+.+.+++++++.||++++++.+.+++.+. +++..+.+.+|+++++|+||..+|.+|++.+-..+. ++++|.|.
T Consensus       252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~  331 (478)
T KOG1336|consen  252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIK  331 (478)
T ss_pred             hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEe
Confidence              58899999999999999999999999998765 567777788999999999999999999954444254 88999999


Q ss_pred             eCccccccCCCCCEEEccccCCCCCCc--------hHHHHHHhHHHHHHHHH
Q psy8791         341 VDKATLQHVKYSNVFAIGDCSNLPTSK--------TAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       341 vd~~~l~~~~~~~Ifa~GD~~~~~~~~--------~~~~a~~qg~~~a~ni~  384 (706)
                      ||+ .|| ++.|||||+||+++.|.+.        -++.|..+|+.+...|.
T Consensus       332 V~~-~f~-t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~  381 (478)
T KOG1336|consen  332 VDE-FFQ-TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIK  381 (478)
T ss_pred             ehh-cee-eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhh
Confidence            999 788 8899999999999998652        23455666665555553

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.96  E-value=4e-27  Score=260.22  Aligned_cols=284  Identities=15%  Similarity=0.193  Sum_probs=196.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccccc-cc---------------------C-c---ccc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL-IG---------------------G-G---MKK   82 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~-~~---------------------~-~---~~~   82 (706)
                      ..+||+|||||+||++||.+|+++  |.+|+|||+++.....+.... ++                     . .   ..+
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~--G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKL--GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT   81 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence            358999999999999999999999  899999999754322211000 00                     0 0   000


Q ss_pred             Cccccc-----------cccc-ccCCCcEEEEceeEEEEcCCCEEEeCCCe--EEEecEEEEccccccccCCCCCCcccc
Q psy8791          83 LSDSRR-----------PMKS-VLPSGATWVKDKIVSFDPENNRVRTQAGS--EISYEYMIVASGIQMYYDRVKGPSALI  148 (706)
Q Consensus        83 ~~~~~~-----------~~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g~--~~~yd~lviAtG~~~~~~~~~g~~~~~  148 (706)
                      ...+..           .+.. +...+++++.+++..++.....|...+|.  ++.||+||+|||+.+..|++++.+   
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~---  158 (461)
T PRK05249         82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFD---  158 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCC---
Confidence            000000           0111 22368999999998888765556666664  689999999999998877766621   


Q ss_pred             cccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeC
Q psy8791         149 NALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCG  228 (706)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~  228 (706)
                                          .+                    .+   ++.+.+..    +....         ...+.++
T Consensus       159 --------------------~~--------------------~v---~~~~~~~~----~~~~~---------~~v~IiG  182 (461)
T PRK05249        159 --------------------HP--------------------RI---YDSDSILS----LDHLP---------RSLIIYG  182 (461)
T ss_pred             --------------------CC--------------------eE---EcHHHhhc----hhhcC---------CeEEEEC
Confidence                                00                    01   11111111    11111         1122334


Q ss_pred             ChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCC
Q psy8791         229 GAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK  306 (706)
Q Consensus       229 g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~  306 (706)
                      |+..  +......+.+.|.    +|+++++.+.+++  ++++.+.+.+.|+++||++++++.+++++.+++.+.+. .++
T Consensus       183 gG~~--g~E~A~~l~~~g~----~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~-~~~  255 (461)
T PRK05249        183 AGVI--GCEYASIFAALGV----KVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVH-LKS  255 (461)
T ss_pred             CCHH--HHHHHHHHHHcCC----eEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEE-ECC
Confidence            4432  2223345666664    4999999998886  68899999999999999999999999998654445443 346


Q ss_pred             ceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         307 TERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       307 g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                      |+++++|.+|+|+|.+|+..   +.+.++ .+++|++.||+ ++| |+.|||||+|||+..  ++++..|..||+.+|.|
T Consensus       256 g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~  331 (461)
T PRK05249        256 GKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE-NYQ-TAVPHIYAVGDVIGF--PSLASASMDQGRIAAQH  331 (461)
T ss_pred             CCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCC-Ccc-cCCCCEEEeeecCCC--cccHhHHHHHHHHHHHH
Confidence            77899999999999999954   455677 67889999999 788 899999999999975  45788999999999999


Q ss_pred             HH
Q psy8791         383 LS  384 (706)
Q Consensus       383 i~  384 (706)
                      |.
T Consensus       332 i~  333 (461)
T PRK05249        332 AV  333 (461)
T ss_pred             Hc
Confidence            95

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.96  E-value=5.8e-27  Score=244.58  Aligned_cols=284  Identities=21%  Similarity=0.235  Sum_probs=187.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc---ccCcccccccCc--cccCcccccccccc-cCCCcEEEEce
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH---YYQPMFTLIGGG--MKKLSDSRRPMKSV-LPSGATWVKDK  104 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~---~~~p~~~~~~~~--~~~~~~~~~~~~~~-~~~~v~~i~~~  104 (706)
                      +||+|||||+|||+||..|++.  +++|+|||+++..   .....+...++.  ......+...+.+. .+.+++++.++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~   78 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA--NLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEE   78 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEE
Confidence            5899999999999999999998  8999999988621   000000001110  01111222333333 34688988899


Q ss_pred             eEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchh
Q psy8791         105 IVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQ  182 (706)
Q Consensus       105 v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (706)
                      |++++++.+  .+.+.++.++.||+||+|||+.+..+.+||.+                                     
T Consensus        79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~-------------------------------------  121 (300)
T TIGR01292        79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGED-------------------------------------  121 (300)
T ss_pred             EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChh-------------------------------------
Confidence            999998776  56666777899999999999998888888821                                     


Q ss_pred             hhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcC
Q psy8791         183 EALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVL  262 (706)
Q Consensus       183 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~  262 (706)
                      .....   .+......+.        ....+.+++        .+++++. ...+ ...+.+.+    .+|+++++.+.+
T Consensus       122 ~~~~~---~~~~~~~~~~--------~~~~~~~v~--------ViG~G~~-~~e~-a~~l~~~~----~~V~~v~~~~~~  176 (300)
T TIGR01292       122 EFLGR---GVSYCATCDG--------PFFKNKEVA--------VVGGGDS-AIEE-ALYLTRIA----KKVTLVHRRDKF  176 (300)
T ss_pred             hcCCc---cEEEeeecCh--------hhcCCCEEE--------EECCChH-HHHH-HHHHHhhc----CEEEEEEeCccc
Confidence            10000   0000000000        011222222        2233322 1222 22344444    258999988765


Q ss_pred             CCchhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCE--EEEEeC--CCceEEeecEEEECCCCCchh-hhhcCCC-CCC
Q psy8791         263 FPSPFYAEKIHDILIGR-GVDVHKGKALVEIDLANKE--AVFKSE--DKTERLPYAIMHVTPPMGPVP-ELATSRL-VDQ  335 (706)
Q Consensus       263 ~~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~--v~~~~~--~~g~~i~~D~vI~a~G~~~~~-~~~~~~l-~~~  335 (706)
                      ..    ...+.+.++++ ||++++++.+.+++.+++.  +.+...  .++.++++|++|||+|++|+. ++..+ + .++
T Consensus       177 ~~----~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~  251 (300)
T TIGR01292       177 RA----EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDE  251 (300)
T ss_pred             Cc----CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecC
Confidence            43    34456677777 9999999999999876532  333221  234689999999999999995 55555 4 577


Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHH
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAV  386 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~  386 (706)
                      +|++.||+ +++ +++||||++|||+.. .++.+..|..||+.+|.+|.+.
T Consensus       252 ~g~i~v~~-~~~-t~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~  299 (300)
T TIGR01292       252 GGYIVTDE-GMR-TSVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERY  299 (300)
T ss_pred             CCcEEECC-CCc-cCCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhh
Confidence            89999999 677 899999999999984 2467889999999999999865

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.95  E-value=1.4e-26  Score=253.32  Aligned_cols=279  Identities=15%  Similarity=0.190  Sum_probs=205.5

Q ss_pred             HHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCccccC-cc-cccccccc-cCCCcEEE-EceeEEEEcCCCEEEeC
Q psy8791          44 SMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKL-SD-SRRPMKSV-LPSGATWV-KDKIVSFDPENNRVRTQ  118 (706)
Q Consensus        44 ~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~~~~-~~-~~~~~~~~-~~~~v~~i-~~~v~~id~~~~~v~~~  118 (706)
                      +||.+|++..++++|||||+++++.|.| .++.+..+.... +. +..+.+++ ...++++. .++|+.||++++++.+.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~   80 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR   80 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence            4889999887789999999999999988 477776665543 22 33334455 44789986 57999999999988775


Q ss_pred             C---CeEEE--ecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcc
Q psy8791         119 A---GSEIS--YEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVS  193 (706)
Q Consensus       119 ~---g~~~~--yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  193 (706)
                      +   +.++.  ||+||+|||+.+..+.+||.+                                   .      .  .+.
T Consensus        81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~-----------------------------------~------~--~v~  117 (427)
T TIGR03385        81 NNKTNETYEESYDYLILSPGASPIVPNIEGIN-----------------------------------L------D--IVF  117 (427)
T ss_pred             ECCCCCEEecCCCEEEECCCCCCCCCCCCCcC-----------------------------------C------C--CEE
Confidence            3   34677  999999999999988899831                                   0      0  122


Q ss_pred             cCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCC-C--chhHHH
Q psy8791         194 TNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLF-P--SPFYAE  270 (706)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~-~--~~~~~~  270 (706)
                      ...+...+..+.+.+.....+++++        ++|++.  +......+++.|.    +|+++++.+.++ +  ++.+.+
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~vvV--------iGgG~~--g~e~A~~l~~~g~----~Vtli~~~~~~~~~~~~~~~~~  183 (427)
T TIGR03385       118 TLRNLEDTDAIKQYIDKNKVENVVI--------IGGGYI--GIEMAEALRERGK----NVTLIHRSERILNKLFDEEMNQ  183 (427)
T ss_pred             EECCHHHHHHHHHHHhhcCCCeEEE--------ECCCHH--HHHHHHHHHhCCC----cEEEEECCcccCccccCHHHHH
Confidence            2233444455555554443333333        333332  2233345666664    499999888764 2  577888


Q ss_pred             HHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCCCceeeCcccccc
Q psy8791         271 KIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQSGYVNVDKATLQH  348 (706)
Q Consensus       271 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~G~i~vd~~~l~~  348 (706)
                      .+++.|+++||++++++.+.+++.++..++   ..+|+++++|.+|+|+|.+|+ +++.++++ .+++|++.||+ +++ 
T Consensus       184 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~---~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~-~~~-  258 (427)
T TIGR03385       184 IVEEELKKHEINLRLNEEVDSIEGEERVKV---FTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNE-KFQ-  258 (427)
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEecCCCEEE---EcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECC-CcE-
Confidence            899999999999999999999987654212   236788999999999999999 56777787 67789999999 687 


Q ss_pred             CCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         349 VKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       349 ~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+.|+|||+|||+..+.        ++++..|.+||+++|+||.
T Consensus       259 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       259 TSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             eCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            79999999999997532        3578899999999999994

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14694 putative mercuric reductase; Provisional

Probab=99.95  E-value=1.6e-26  Score=255.10  Aligned_cols=282  Identities=18%  Similarity=0.252  Sum_probs=195.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc------------ccc--Ccc------
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT------------LIG--GGM------   80 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~------------~~~--~~~------   80 (706)
                      ...+||+|||||+||++||..|++.  +.+|+|||++.. ...       |.-.            ...  .+.      
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~--g~~v~lie~~~~-GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~   80 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATER--GARVTLIERGTI-GGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV   80 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEEcccc-ccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence            3568999999999999999999998  899999998752 110       1100            000  000      


Q ss_pred             ccCcccc-------cc-----ccccc-C-CCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCC
Q psy8791          81 KKLSDSR-------RP-----MKSVL-P-SGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGP  144 (706)
Q Consensus        81 ~~~~~~~-------~~-----~~~~~-~-~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~  144 (706)
                      .+...+.       ..     +...+ . .+++++.++++.+|++...|.+.+|  .+++||+||+|||+.+..|++||.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~  160 (468)
T PRK14694         81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGL  160 (468)
T ss_pred             cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCC
Confidence            0000100       00     11122 2 3799999999999998888888876  379999999999999999999993


Q ss_pred             cccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCC
Q psy8791         145 SALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATP  224 (706)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~  224 (706)
                      +                                     +.      .++   +...+..    +.... .++        
T Consensus       161 ~-------------------------------------~~------~~~---~~~~~~~----l~~~~-~~v--------  181 (468)
T PRK14694        161 A-------------------------------------ET------PYL---TSTSALE----LDHIP-ERL--------  181 (468)
T ss_pred             C-------------------------------------CC------ceE---cchhhhc----hhcCC-CeE--------
Confidence            2                                     00      000   0111111    11111 111        


Q ss_pred             eeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE
Q psy8791         225 IKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK  302 (706)
Q Consensus       225 v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~  302 (706)
                      +.+++++.  +......+++.|.    +|+++++. ++++  ++++.+.+++.|+++||++++++.+.+++.+++.+.+.
T Consensus       182 vViG~G~~--G~E~A~~l~~~g~----~Vtlv~~~-~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~  254 (468)
T PRK14694        182 LVIGASVV--ALELAQAFARLGS----RVTVLARS-RVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILE  254 (468)
T ss_pred             EEECCCHH--HHHHHHHHHHcCC----eEEEEECC-CCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE
Confidence            22333322  2333455666764    48888864 5554  67889999999999999999999999998766544433


Q ss_pred             eCCCceEEeecEEEECCCCCchhhh---hcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHH
Q psy8791         303 SEDKTERLPYAIMHVTPPMGPVPEL---ATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVV  379 (706)
Q Consensus       303 ~~~~g~~i~~D~vI~a~G~~~~~~~---~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~  379 (706)
                       + ++.++++|.+|+|+|.+|+..+   .+.++..++|++.||+ +++ |+.|||||+|||+..+  .....|..||+.+
T Consensus       255 -~-~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~-~~~-Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~a  328 (468)
T PRK14694        255 -T-NAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDE-HLQ-TTVSGIYAAGDCTDQP--QFVYVAAAGGSRA  328 (468)
T ss_pred             -E-CCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCC-Ccc-cCCCCEEEEeecCCCc--ccHHHHHHHHHHH
Confidence             2 3347999999999999999653   3456755789999999 688 8999999999999864  4778899999999


Q ss_pred             HHHHH
Q psy8791         380 YDNLS  384 (706)
Q Consensus       380 a~ni~  384 (706)
                      |.||.
T Consensus       329 a~~i~  333 (468)
T PRK14694        329 AINMT  333 (468)
T ss_pred             HHHhc
Confidence            99994

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.95  E-value=5.3e-27  Score=250.73  Aligned_cols=283  Identities=16%  Similarity=0.245  Sum_probs=200.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------ccc---c------c---cc--Ccc------c
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMF---T------L---IG--GGM------K   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~---~------~---~~--~~~------~   81 (706)
                      ..+|+||||||+||..||.++++.  |.+|.+||+.+.....       |.-   .      .   ..  .|.      .
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~--G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i   80 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQL--GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI   80 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence            468999999999999999999999  7779999999532222       210   0      0   00  000      0


Q ss_pred             cCccc-----------ccccccccC-CCcEEEEceeEEEEcCCCEEEeCC--CeEEEecEEEEccccccccCCCCCCccc
Q psy8791          82 KLSDS-----------RRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQA--GSEISYEYMIVASGIQMYYDRVKGPSAL  147 (706)
Q Consensus        82 ~~~~~-----------~~~~~~~~~-~~v~~i~~~v~~id~~~~~v~~~~--g~~~~yd~lviAtG~~~~~~~~~g~~~~  147 (706)
                      +..++           ...+..+++ .+++++.++..-+|  .++|.+.+  .+++++|++|||||++|..|++|+.+  
T Consensus        81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~--  156 (454)
T COG1249          81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGID--  156 (454)
T ss_pred             CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCC--
Confidence            11000           011222333 58999999888776  45676665  47899999999999999999888842  


Q ss_pred             ccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeee
Q psy8791         148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKC  227 (706)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~  227 (706)
                                                         +.      .+   ++.+.+..    +..++         .+-+.+
T Consensus       157 -----------------------------------~~------~~---~~s~~~l~----~~~lP---------~~lvIi  179 (454)
T COG1249         157 -----------------------------------GA------RI---LDSSDALF----LLELP---------KSLVIV  179 (454)
T ss_pred             -----------------------------------CC------eE---Eechhhcc----cccCC---------CEEEEE
Confidence                                               10      00   00000000    00222         222334


Q ss_pred             CChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCC
Q psy8791         228 GGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED  305 (706)
Q Consensus       228 ~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~  305 (706)
                      +|+..  +......+++.|..    ||++++.+++++  ++++++.+.+.|++.|+++++++++++++.+++.+.+. .+
T Consensus       180 GgG~I--GlE~a~~~~~LG~~----VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~-~~  252 (454)
T COG1249         180 GGGYI--GLEFASVFAALGSK----VTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVT-LE  252 (454)
T ss_pred             CCCHH--HHHHHHHHHHcCCc----EEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEE-Ee
Confidence            44422  22333457778854    999999999998  89999999999999999999999999998766543332 23


Q ss_pred             Cce--EEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHH
Q psy8791         306 KTE--RLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVV  379 (706)
Q Consensus       306 ~g~--~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~  379 (706)
                      +|+  ++++|.+++|+|.+||..   +++.|+ .+++|+|.||. .++ |+.|||||+|||+..+.  +++.|..||+++
T Consensus       253 ~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~-~~~-Tnvp~IyA~GDV~~~~~--Lah~A~~eg~ia  328 (454)
T COG1249         253 DGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDD-QMT-TNVPGIYAIGDVIGGPM--LAHVAMAEGRIA  328 (454)
T ss_pred             cCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCC-ccc-cCCCCEEEeeccCCCcc--cHhHHHHHHHHH
Confidence            444  799999999999999943   677898 88889999995 555 88999999999988754  899999999999


Q ss_pred             HHHHHH
Q psy8791         380 YDNLSA  385 (706)
Q Consensus       380 a~ni~~  385 (706)
                      |+||..
T Consensus       329 a~~i~g  334 (454)
T COG1249         329 AENIAG  334 (454)
T ss_pred             HHHHhC
Confidence            999975

>PRK06370 mercuric reductase; Validated

Probab=99.95  E-value=1.8e-26  Score=254.67  Aligned_cols=281  Identities=19%  Similarity=0.258  Sum_probs=192.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccccc-c-------------------cCcc-------c
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL-I-------------------GGGM-------K   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~-~-------------------~~~~-------~   81 (706)
                      ..+||||||||+||++||.+|+++  |++|+|||+... ...+.... +                   ..+.       .
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGL--GMKVALIERGLL-GGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV   80 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCcc-CCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence            458999999999999999999999  899999998742 11111000 0                   0000       0


Q ss_pred             cCcccc-----------cccccccC-C-CcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccc
Q psy8791          82 KLSDSR-----------RPMKSVLP-S-GATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALI  148 (706)
Q Consensus        82 ~~~~~~-----------~~~~~~~~-~-~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~  148 (706)
                      +...+.           ..+...+. . +++++.++...+  +.++|.++ +.++.||+||+|||+.+..|++||.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~--~~~~v~v~-~~~~~~d~lViATGs~p~~p~i~G~~---  154 (463)
T PRK06370         81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFE--SPNTVRVG-GETLRAKRIFINTGARAAIPPIPGLD---  154 (463)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEc--cCCEEEEC-cEEEEeCEEEEcCCCCCCCCCCCCCC---
Confidence            110000           11122222 3 899988877654  45667764 56799999999999999999999932   


Q ss_pred             cccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeC
Q psy8791         149 NALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCG  228 (706)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~  228 (706)
                                                        ..      .+   ++.+.+..    +...         +...+.++
T Consensus       155 ----------------------------------~~------~~---~~~~~~~~----~~~~---------~~~vvVIG  178 (463)
T PRK06370        155 ----------------------------------EV------GY---LTNETIFS----LDEL---------PEHLVIIG  178 (463)
T ss_pred             ----------------------------------cC------ce---EcchHhhC----cccc---------CCEEEEEC
Confidence                                              00      01   11111100    0011         11122334


Q ss_pred             ChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEE--EEEeC
Q psy8791         229 GAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEA--VFKSE  304 (706)
Q Consensus       229 g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v--~~~~~  304 (706)
                      |+..  +......+.+.|.    +|+++++.+.+++  ++++.+.+++.|+++||++++++.|.+++.+++.+  .+...
T Consensus       179 gG~~--g~E~A~~l~~~G~----~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~  252 (463)
T PRK06370        179 GGYI--GLEFAQMFRRFGS----EVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCN  252 (463)
T ss_pred             CCHH--HHHHHHHHHHcCC----eEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeC
Confidence            4422  2333445666664    4999999988876  67788899999999999999999999998754433  23222


Q ss_pred             CCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHH
Q psy8791         305 DKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY  380 (706)
Q Consensus       305 ~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a  380 (706)
                      +++.++++|.||+|+|.+|+..   +.+.++ .+++|++.||+ ++| |+.|||||+|||+..  ++++..|..||+++|
T Consensus       253 ~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~l~-t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa  328 (463)
T PRK06370        253 GGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDD-QLR-TTNPGIYAAGDCNGR--GAFTHTAYNDARIVA  328 (463)
T ss_pred             CCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECc-CCc-CCCCCEEEeeecCCC--cccHHHHHHHHHHHH
Confidence            3456899999999999999954   455677 67889999999 688 899999999999876  457889999999999


Q ss_pred             HHHH
Q psy8791         381 DNLS  384 (706)
Q Consensus       381 ~ni~  384 (706)
                      +||.
T Consensus       329 ~ni~  332 (463)
T PRK06370        329 ANLL  332 (463)
T ss_pred             HHHh
Confidence            9995

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.95  E-value=9.6e-27  Score=254.79  Aligned_cols=277  Identities=14%  Similarity=0.162  Sum_probs=189.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc---------------cccC--c---ccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT---------------LIGG--G---MKK   82 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~---------------~~~~--~---~~~   82 (706)
                      .+||+|||||+||++||..|+++  |.+|+|||++.. ...       |...               ....  .   ..+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEH--GAKALLVEAKKL-GGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN   78 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCcEEEeccccc-ccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence            47999999999999999999999  899999999642 221       1100               0000  0   000


Q ss_pred             Ccccc-----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccC-CCCCCccccc
Q psy8791          83 LSDSR-----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYD-RVKGPSALIN  149 (706)
Q Consensus        83 ~~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~-~~~g~~~~~~  149 (706)
                      ...+.           ..+...+ ..+++++.++....+  .++|.+ ++..+.||+||+|||+.+..| ++||.+   +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~---~  152 (450)
T TIGR01421        79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE---L  152 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc---e
Confidence            00000           0111222 358999988776443  456766 456799999999999999888 788821   0


Q ss_pred             ccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCC
Q psy8791         150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGG  229 (706)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g  229 (706)
                      ..                                             +.+.+..    +...         +...+.++|
T Consensus       153 ~~---------------------------------------------~~~~~~~----~~~~---------~~~vvIIGg  174 (450)
T TIGR01421       153 GT---------------------------------------------DSDGFFA----LEEL---------PKRVVIVGA  174 (450)
T ss_pred             eE---------------------------------------------cHHHhhC----cccc---------CCeEEEECC
Confidence            00                                             0000000    0011         112223344


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEEEeCCC
Q psy8791         230 APMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVFKSEDK  306 (706)
Q Consensus       230 ~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~~~~~~  306 (706)
                      +..  +......+.+.|.    +|+++++.+++++  ++.+.+.+++.|+++||++++++.+++++.++.. +... .++
T Consensus       175 G~i--G~E~A~~l~~~g~----~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~-~~~  247 (450)
T TIGR01421       175 GYI--AVELAGVLHGLGS----ETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIH-FED  247 (450)
T ss_pred             CHH--HHHHHHHHHHcCC----cEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEE-ECC
Confidence            422  2223345666664    4999999988876  6788999999999999999999999999864322 3332 335


Q ss_pred             c-eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHH
Q psy8791         307 T-ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYD  381 (706)
Q Consensus       307 g-~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~  381 (706)
                      | +++++|.||+++|.+||..   ++..++ .+++|++.||+ ++| |+.|||||+|||+..+  ..+..|..||+.+|+
T Consensus       248 g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~~~-T~~p~IyAiGD~~~~~--~~~~~A~~~g~~aa~  323 (450)
T TIGR01421       248 GKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDE-YQN-TNVPGIYALGDVVGKV--ELTPVAIAAGRKLSE  323 (450)
T ss_pred             CcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCC-CCc-CCCCCEEEEEecCCCc--ccHHHHHHHHHHHHH
Confidence            6 6799999999999999954   456677 77889999999 677 8999999999999753  477899999999999


Q ss_pred             HHH
Q psy8791         382 NLS  384 (706)
Q Consensus       382 ni~  384 (706)
                      ||.
T Consensus       324 ~i~  326 (450)
T TIGR01421       324 RLF  326 (450)
T ss_pred             HHh
Confidence            994

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.95  E-value=2e-26  Score=254.60  Aligned_cols=282  Identities=16%  Similarity=0.224  Sum_probs=191.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccc-c-------------------Ccc------cc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLI-G-------------------GGM------KK   82 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~-~-------------------~~~------~~   82 (706)
                      ..+||+|||||+||++||..|+++  |.+|+|||+++ ....+....+ +                   .+.      .+
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~--G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL--GLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            358999999999999999999999  89999999976 2221110000 0                   000      00


Q ss_pred             Ccccc-----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCC-CeEEEecEEEEccccccccCCCCCCccccc
Q psy8791          83 LSDSR-----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQA-GSEISYEYMIVASGIQMYYDRVKGPSALIN  149 (706)
Q Consensus        83 ~~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~-g~~~~yd~lviAtG~~~~~~~~~g~~~~~~  149 (706)
                      ...+.           .++...+ ..+++++.++++.+|+....|...+ +.++.||+||+|||+.+..  +||.+    
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~--~pg~~----  153 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRE--LPGIE----  153 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCC--CCCCC----
Confidence            00011           0122222 3689999999998887655555333 4679999999999998854  35621    


Q ss_pred             ccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCC
Q psy8791         150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGG  229 (706)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g  229 (706)
                      .                 ...                    .+   ++.+.+..    +....         ...+.++|
T Consensus       154 ~-----------------~~~--------------------~v---~~~~~~~~----~~~~~---------~~vvVvGg  180 (462)
T PRK06416        154 I-----------------DGR--------------------VI---WTSDEALN----LDEVP---------KSLVVIGG  180 (462)
T ss_pred             C-----------------CCC--------------------eE---EcchHhhC----ccccC---------CeEEEECC
Confidence            0                 000                    01   11111111    01111         11123344


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc
Q psy8791         230 APMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT  307 (706)
Q Consensus       230 ~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g  307 (706)
                      ++.  +......+++.|.    +|+++++.+.+++  ++.+.+.+++.|+++||+++++++|.+++.+++.+.+.. .++
T Consensus       181 G~~--g~E~A~~l~~~g~----~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~-~~g  253 (462)
T PRK06416        181 GYI--GVEFASAYASLGA----EVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTL-EDG  253 (462)
T ss_pred             CHH--HHHHHHHHHHcCC----eEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEE-EeC
Confidence            432  2222345666664    4999999988876  678889999999999999999999999987655554432 233


Q ss_pred             ---eEEeecEEEECCCCCchhhh---hcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHH
Q psy8791         308 ---ERLPYAIMHVTPPMGPVPEL---ATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY  380 (706)
Q Consensus       308 ---~~i~~D~vI~a~G~~~~~~~---~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a  380 (706)
                         +++++|.+|+|+|.+|+..+   .+.++ .+ +|++.||+ ++| |+.|+|||+|||+..  ++++..|..||+.+|
T Consensus       254 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~-~~~-t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa  328 (462)
T PRK06416        254 GKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDE-QLR-TNVPNIYAIGDIVGG--PMLAHKASAEGIIAA  328 (462)
T ss_pred             CeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECC-CCc-cCCCCEEEeeecCCC--cchHHHHHHHHHHHH
Confidence               67999999999999999553   45677 55 89999999 688 899999999999975  458889999999999


Q ss_pred             HHHH
Q psy8791         381 DNLS  384 (706)
Q Consensus       381 ~ni~  384 (706)
                      .||.
T Consensus       329 ~ni~  332 (462)
T PRK06416        329 EAIA  332 (462)
T ss_pred             HHHc
Confidence            9995

>TIGR02053 MerA mercuric reductase

Probab=99.95  E-value=1.2e-26  Score=256.13  Aligned_cols=280  Identities=17%  Similarity=0.228  Sum_probs=193.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c------------ccc---Ccc------ccC--
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T------------LIG---GGM------KKL--   83 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~------------~~~---~~~------~~~--   83 (706)
                      +||||||||+||++||..|+++  |.+|+|||+++. ...+..    |            ...   .+.      .+.  
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~--g~~v~lie~~~~-GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   77 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL--GASVAMVERGPL-GGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE   77 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCcc-cCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence            5899999999999999999998  899999999752 222110    0            000   000      000  


Q ss_pred             -----ccccc-----cccccc-CCCcEEEEceeEEEEcCCCEEEeCCCe-EEEecEEEEccccccccCCCCCCccccccc
Q psy8791          84 -----SDSRR-----PMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGS-EISYEYMIVASGIQMYYDRVKGPSALINAL  151 (706)
Q Consensus        84 -----~~~~~-----~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~-~~~yd~lviAtG~~~~~~~~~g~~~~~~~~  151 (706)
                           +.+..     .+..++ ..+++++.+++..+|  .++|.+.++. .+.||+||+|||+.+..|++||.+      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~------  149 (463)
T TIGR02053        78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLK------  149 (463)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcc------
Confidence                 00100     012222 368999999887665  5678887753 578999999999999999999932      


Q ss_pred             ccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChh
Q psy8791         152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP  231 (706)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~  231 (706)
                                                     ..      .+   ++.+.+..    +.... .++        +.++|+.
T Consensus       150 -------------------------------~~------~~---~~~~~~~~----~~~~~-~~v--------vIIGgG~  176 (463)
T TIGR02053       150 -------------------------------EA------GY---LTSEEALA----LDRIP-ESL--------AVIGGGA  176 (463)
T ss_pred             -------------------------------cC------ce---ECchhhhC----cccCC-CeE--------EEECCCH
Confidence                                           00      00   11111100    00011 111        2233432


Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE--EEeCCCc
Q psy8791         232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV--FKSEDKT  307 (706)
Q Consensus       232 ~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~--~~~~~~g  307 (706)
                      .  +......+.+.|.    +|+++++.+++++  ++++...+++.|++.||+++++++|.+++.+++.+.  +...+++
T Consensus       177 ~--g~E~A~~l~~~g~----~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~  250 (463)
T TIGR02053       177 I--GVELAQAFARLGS----EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQ  250 (463)
T ss_pred             H--HHHHHHHHHHcCC----cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCc
Confidence            2  2233345666664    4999999988876  678889999999999999999999999986544332  2222234


Q ss_pred             eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         308 ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       308 ~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      +++++|.||+|+|.+|+..   +...++ .+++|++.||+ ++| |+.|||||+|||+..  ++++..|..||+++|.||
T Consensus       251 ~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-Ts~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni  326 (463)
T TIGR02053       251 GEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDE-TLR-TSNPGIYAAGDVTGG--LQLEYVAAKEGVVAAENA  326 (463)
T ss_pred             eEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECC-Ccc-CCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHh
Confidence            6899999999999999954   455677 67889999998 788 899999999999986  458889999999999999


Q ss_pred             H
Q psy8791         384 S  384 (706)
Q Consensus       384 ~  384 (706)
                      .
T Consensus       327 ~  327 (463)
T TIGR02053       327 L  327 (463)
T ss_pred             c
Confidence            5

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02546 glutathione reductase

Probab=99.95  E-value=2.3e-26  Score=254.85  Aligned_cols=279  Identities=14%  Similarity=0.184  Sum_probs=191.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC---------CCcccC-------cc--cc------c-c----cCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT---------DDHYYQ-------PM--FT------L-I----GGG   79 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~---------~~~~~~-------p~--~~------~-~----~~~   79 (706)
                      .++||+|||||+||+.||..++++  |.+|+|||+.         ..+...       |.  +.      . .    ..+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g  155 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNF--GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG  155 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence            357999999999999999999999  9999999962         111111       11  00      0 0    000


Q ss_pred             c-------ccCc-----------cccccccccc-CCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCC
Q psy8791          80 M-------KKLS-----------DSRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDR  140 (706)
Q Consensus        80 ~-------~~~~-----------~~~~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~  140 (706)
                      .       .+..           .+...+.+.+ ..+++++.++++.+|+.  +|.+ +|+++.||+||||||+++..|+
T Consensus       156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v-~G~~~~~D~LVIATGs~p~~P~  232 (558)
T PLN02546        156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDV-DGKLYTARNILIAVGGRPFIPD  232 (558)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEE-CCEEEECCEEEEeCCCCCCCCC
Confidence            0       0000           0111222323 36899999999999874  5655 5678999999999999999999


Q ss_pred             CCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEec
Q psy8791         141 VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTF  220 (706)
Q Consensus       141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~  220 (706)
                      +||.+                                     ..           ++.+.+...    .. ...      
T Consensus       233 IpG~~-------------------------------------~v-----------~~~~~~l~~----~~-~~k------  253 (558)
T PLN02546        233 IPGIE-------------------------------------HA-----------IDSDAALDL----PS-KPE------  253 (558)
T ss_pred             CCChh-------------------------------------hc-----------cCHHHHHhc----cc-cCC------
Confidence            99921                                     10           111111100    00 111      


Q ss_pred             CCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCC-CC
Q psy8791         221 PATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLA-NK  297 (706)
Q Consensus       221 ~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~  297 (706)
                        ..+.++|+..  +......+...+.    +|+++++.+.+++  ++.+.+.+++.|+++||++++++.+.++..+ ++
T Consensus       254 --~V~VIGgG~i--GvE~A~~L~~~g~----~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g  325 (558)
T PLN02546        254 --KIAIVGGGYI--ALEFAGIFNGLKS----DVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADG  325 (558)
T ss_pred             --eEEEECCCHH--HHHHHHHHHhcCC----eEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCC
Confidence              1122344422  2222334555553    5999999888776  6888899999999999999999999999753 33


Q ss_pred             EEEEEeCCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHH
Q psy8791         298 EAVFKSEDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA  373 (706)
Q Consensus       298 ~v~~~~~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~  373 (706)
                      .+.+ .+++++...+|.|||++|.+||..   +++.++ .+++|+|.||+ ++| |+.|||||+|||+..  +.++..|.
T Consensus       326 ~v~v-~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~-~l~-Ts~p~IYAaGDv~~~--~~l~~~A~  400 (558)
T PLN02546        326 SLSL-KTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDE-YSR-TSVPSIWAVGDVTDR--INLTPVAL  400 (558)
T ss_pred             EEEE-EECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECC-Cce-eCCCCEEEeeccCCC--cccHHHHH
Confidence            3433 233555556999999999999964   456787 67789999999 688 899999999999986  45788999


Q ss_pred             HhHHHHHHHHH
Q psy8791         374 GQCKVVYDNLS  384 (706)
Q Consensus       374 ~qg~~~a~ni~  384 (706)
                      .||+.+|+||.
T Consensus       401 ~~g~~~a~~i~  411 (558)
T PLN02546        401 MEGGALAKTLF  411 (558)
T ss_pred             HHHHHHHHHHc
Confidence            99999999994

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.95  E-value=4.5e-26  Score=249.85  Aligned_cols=281  Identities=19%  Similarity=0.252  Sum_probs=191.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc-ccC-------cccccccCc--cccCccccc-----------
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH-YYQ-------PMFTLIGGG--MKKLSDSRR-----------   88 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~-~~~-------p~~~~~~~~--~~~~~~~~~-----------   88 (706)
                      .+||||||||+||++||..|+++  |.+|+|||+++.. ..+       |....+...  ..+...+..           
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~--g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASA--GKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG   80 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999998  8999999998742 211       111100000  001111110           


Q ss_pred             -ccccccCCCcEEEEceeEEEEcCCCEEEeCC---CeEEEecEEEEccccccccCCCCCCcccccccccccccccccccC
Q psy8791          89 -PMKSVLPSGATWVKDKIVSFDPENNRVRTQA---GSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFP  164 (706)
Q Consensus        89 -~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~---g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  164 (706)
                       ....+...+++++.+++..+  ++++|.+.+   ..++.||+||+|||+.+..|++||.+  ++.              
T Consensus        81 ~~~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~--~~~--------------  142 (438)
T PRK07251         81 KNYAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLA--DSK--------------  142 (438)
T ss_pred             HHHHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcC--CCC--------------
Confidence             11223347899999887665  356666643   24789999999999999989999931  000              


Q ss_pred             ccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHH
Q psy8791         165 LFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRK  244 (706)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~  244 (706)
                                                .+   ++...+..    +.... .++        +.++|++.  +......+++
T Consensus       143 --------------------------~v---~~~~~~~~----~~~~~-~~v--------vIIGgG~~--g~e~A~~l~~  178 (438)
T PRK07251        143 --------------------------HV---YDSTGIQS----LETLP-ERL--------GIIGGGNI--GLEFAGLYNK  178 (438)
T ss_pred             --------------------------cE---EchHHHhc----chhcC-CeE--------EEECCCHH--HHHHHHHHHH
Confidence                                      01   11111111    11111 111        22344422  2223334566


Q ss_pred             cCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCC
Q psy8791         245 HKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       245 ~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~  322 (706)
                      .|.    +|+++++.+.+++  ++.+.+.+++.|+++||++++++++.+++.+++.+...  .+++++++|.+|+|+|.+
T Consensus       179 ~g~----~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~--~~g~~i~~D~viva~G~~  252 (438)
T PRK07251        179 LGS----KVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV--TEDETYRFDALLYATGRK  252 (438)
T ss_pred             cCC----eEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE--ECCeEEEcCEEEEeeCCC
Confidence            664    4999999988876  57888889999999999999999999998765555443  256789999999999999


Q ss_pred             chhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         323 PVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       323 ~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+..   +.+.++ .+++|++.||+ ++| |+.|||||+|||+..  +.....|..|++.++.++.
T Consensus       253 p~~~~l~l~~~~~~~~~~g~i~vd~-~~~-t~~~~IyaiGD~~~~--~~~~~~a~~~~~~~~~~~~  314 (438)
T PRK07251        253 PNTEPLGLENTDIELTERGAIKVDD-YCQ-TSVPGVFAVGDVNGG--PQFTYISLDDFRIVFGYLT  314 (438)
T ss_pred             CCcccCCchhcCcEECCCCcEEECC-Ccc-cCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHc
Confidence            9943   333566 57789999999 687 899999999999975  4577888999999988874

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.95  E-value=5.4e-26  Score=250.22  Aligned_cols=282  Identities=17%  Similarity=0.208  Sum_probs=191.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccccc-------------cCcccc--Ccccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTLI-------------GGGMKK--LSDSR   87 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~~-------------~~~~~~--~~~~~   87 (706)
                      +++|+|||||+||+.||..++++  +.+|+|||+++. ...       |.-..+             ..+...  .+...
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~--g~~v~~~e~~~~-gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   77 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQL--GADVTVIERDGL-GGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR   77 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCC-CCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence            36899999999999999999998  899999998762 222       110000             000000  00000


Q ss_pred             c------------------cc-ccccCCCcEEEEceeEEEE--cCCCE--EEeCCCe--EEEecEEEEccccccccCCCC
Q psy8791          88 R------------------PM-KSVLPSGATWVKDKIVSFD--PENNR--VRTQAGS--EISYEYMIVASGIQMYYDRVK  142 (706)
Q Consensus        88 ~------------------~~-~~~~~~~v~~i~~~v~~id--~~~~~--v~~~~g~--~~~yd~lviAtG~~~~~~~~~  142 (706)
                      .                  .+ ..+...+++++.++++.++  .+.++  |.+.+|.  ++.||+||+|||+.+..++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~  157 (466)
T PRK07845         78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTA  157 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCC
Confidence            0                  11 1122368999999998854  33444  4445664  799999999999998765544


Q ss_pred             CCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCC
Q psy8791         143 GPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPA  222 (706)
Q Consensus       143 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~  222 (706)
                      +.+ .+                                          .+.   +......    +....         .
T Consensus       158 ~~~-~~------------------------------------------~v~---~~~~~~~----~~~~~---------~  178 (466)
T PRK07845        158 EPD-GE------------------------------------------RIL---TWRQLYD----LDELP---------E  178 (466)
T ss_pred             CCC-Cc------------------------------------------eEE---eehhhhc----ccccC---------C
Confidence            310 00                                          000   0000000    01111         1


Q ss_pred             CCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE
Q psy8791         223 TPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV  300 (706)
Q Consensus       223 ~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~  300 (706)
                      ..+.++|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+++.|+++||++++++.+.+++.+++.+.
T Consensus       179 ~vvVIGgG~i--g~E~A~~l~~~g~----~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~  252 (466)
T PRK07845        179 HLIVVGSGVT--GAEFASAYTELGV----KVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVV  252 (466)
T ss_pred             eEEEECCCHH--HHHHHHHHHHcCC----eEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEE
Confidence            1122344422  2223345666664    5999999988886  678889999999999999999999999975544454


Q ss_pred             EEeCCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhH
Q psy8791         301 FKSEDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQC  376 (706)
Q Consensus       301 ~~~~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg  376 (706)
                      +. ..+|+++++|.|++++|.+||..   +.++++ .+++|+|.||+ ++| |+.|||||+|||+..  ++++..|..||
T Consensus       253 v~-~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~-~~~-Ts~~~IyA~GD~~~~--~~l~~~A~~~g  327 (466)
T PRK07845        253 VT-LTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDR-VSR-TSVPGIYAAGDCTGV--LPLASVAAMQG  327 (466)
T ss_pred             EE-ECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECC-Ccc-cCCCCEEEEeeccCC--ccchhHHHHHH
Confidence            43 34678999999999999999954   466788 67889999999 687 899999999999976  45889999999


Q ss_pred             HHHHHHHH
Q psy8791         377 KVVYDNLS  384 (706)
Q Consensus       377 ~~~a~ni~  384 (706)
                      ++++.|+.
T Consensus       328 ~~aa~~i~  335 (466)
T PRK07845        328 RIAMYHAL  335 (466)
T ss_pred             HHHHHHHc
Confidence            99999995

>PTZ00058 glutathione reductase; Provisional

Probab=99.95  E-value=1.7e-25  Score=247.87  Aligned_cols=286  Identities=14%  Similarity=0.168  Sum_probs=190.9

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c---------------c-ccCcc-----
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T---------------L-IGGGM-----   80 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~---------------~-~~~~~-----   80 (706)
                      +.+.++||+|||||+||++||..+++.  |.+|+|||++.. ...|..    |               . ...|.     
T Consensus        44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~--G~~ValIEk~~~-GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~  120 (561)
T PTZ00058         44 KPRMVYDLIVIGGGSGGMAAARRAARN--KAKVALVEKDYL-GGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFS  120 (561)
T ss_pred             CCCccccEEEECcCHHHHHHHHHHHHc--CCeEEEEecccc-cccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCc
Confidence            334568999999999999999999999  899999998742 211110    0               0 00000     


Q ss_pred             ccCccc-----------ccccccccC-CCcEEEEceeEEEEcCC--------------------CEE------EeCCCeE
Q psy8791          81 KKLSDS-----------RRPMKSVLP-SGATWVKDKIVSFDPEN--------------------NRV------RTQAGSE  122 (706)
Q Consensus        81 ~~~~~~-----------~~~~~~~~~-~~v~~i~~~v~~id~~~--------------------~~v------~~~~g~~  122 (706)
                      .+...+           ...+..+++ .+++++.++..-+++..                    -+|      ..++|.+
T Consensus       121 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~  200 (561)
T PTZ00058        121 FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV  200 (561)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence            000010           011122222 68999988765444221                    112      1246678


Q ss_pred             EEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHH
Q psy8791         123 ISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVE  202 (706)
Q Consensus       123 ~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~  202 (706)
                      +.||+||||||+.+..|++||.+   +                                          +   ++.+...
T Consensus       201 i~ad~lVIATGS~P~~P~IpG~~---~------------------------------------------v---~ts~~~~  232 (561)
T PTZ00058        201 IEGKNILIAVGNKPIFPDVKGKE---F------------------------------------------T---ISSDDFF  232 (561)
T ss_pred             EECCEEEEecCCCCCCCCCCCce---e------------------------------------------E---EEHHHHh
Confidence            99999999999999989899821   0                                          0   0111110


Q ss_pred             HHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCC
Q psy8791         203 KTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRG  280 (706)
Q Consensus       203 ~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~g  280 (706)
                             ....++.+       +.++|+.  ++......+.+.|.    +|+++++.+++++  ++++.+.+++.|+++|
T Consensus       233 -------~l~~pk~V-------vIIGgG~--iGlE~A~~l~~~G~----~Vtli~~~~~il~~~d~~i~~~l~~~L~~~G  292 (561)
T PTZ00058        233 -------KIKEAKRI-------GIAGSGY--IAVELINVVNRLGA----ESYIFARGNRLLRKFDETIINELENDMKKNN  292 (561)
T ss_pred             -------hccCCCEE-------EEECCcH--HHHHHHHHHHHcCC----cEEEEEecccccccCCHHHHHHHHHHHHHCC
Confidence                   11111111       2233332  12223345666664    4999999888876  6788899999999999


Q ss_pred             ceEEcCCceEEEeCCCC-EEEEEeCCCceEEeecEEEECCCCCchhhhh---cCCCCCCCCceeeCccccccCCCCCEEE
Q psy8791         281 VDVHKGKALVEIDLANK-EAVFKSEDKTERLPYAIMHVTPPMGPVPELA---TSRLVDQSGYVNVDKATLQHVKYSNVFA  356 (706)
Q Consensus       281 V~v~~~~~v~~i~~~~~-~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~---~~~l~~~~G~i~vd~~~l~~~~~~~Ifa  356 (706)
                      |+++++..+.+++.++. .+.....++++++++|.|++++|.+|+....   ..++.+++|+|.||+ ++| |+.|||||
T Consensus       293 V~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe-~lq-Ts~p~IYA  370 (561)
T PTZ00058        293 INIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDD-NQR-TSVKHIYA  370 (561)
T ss_pred             CEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECc-CCc-cCCCCEEE
Confidence            99999999999986432 3443333445689999999999999995432   234456789999999 687 89999999


Q ss_pred             ccccCCCC--------------------------------CCchHHHHHHhHHHHHHHHH
Q psy8791         357 IGDCSNLP--------------------------------TSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       357 ~GD~~~~~--------------------------------~~~~~~~a~~qg~~~a~ni~  384 (706)
                      +|||+..+                                .++++..|..||+++|+||.
T Consensus       371 ~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~  430 (561)
T PTZ00058        371 VGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF  430 (561)
T ss_pred             eEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence            99999832                                25678899999999999995

>PRK10262 thioredoxin reductase; Provisional

Probab=99.95  E-value=3e-26  Score=240.97  Aligned_cols=297  Identities=17%  Similarity=0.192  Sum_probs=192.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC---cccCcccccccCcc--ccCccccccccccc-CCCcEEE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD---HYYQPMFTLIGGGM--KKLSDSRRPMKSVL-PSGATWV  101 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~---~~~~p~~~~~~~~~--~~~~~~~~~~~~~~-~~~v~~i  101 (706)
                      ...++|+|||||+|||+||..|+++  ++++++||..+.   +.+.+..+.+++..  .+...+...+.+.. ..+.++.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII   81 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence            4568999999999999999999998  889999985432   21212221122110  01111111122222 2456777


Q ss_pred             EceeEEEEcCCCEEEeC-CCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccc
Q psy8791         102 KDKIVSFDPENNRVRTQ-AGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSG  180 (706)
Q Consensus       102 ~~~v~~id~~~~~v~~~-~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (706)
                      .++|+.|+...+.+.+. +...+.||+||+|||+.++.|++||.+    .                |..+.++       
T Consensus        82 ~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~----~----------------~~~~~v~-------  134 (321)
T PRK10262         82 FDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEE----A----------------FKGRGVS-------  134 (321)
T ss_pred             eeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHH----H----------------cCCCcEE-------
Confidence            78888898877764443 233789999999999999988899821    0                1111111       


Q ss_pred             hhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCC
Q psy8791         181 LQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG  260 (706)
Q Consensus       181 l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~  260 (706)
                                   .....+..        ...+.++        +.++|+. . +......+.+.+.    +|+++++.+
T Consensus       135 -------------~~~~~~~~--------~~~g~~v--------vVvGgG~-~-g~e~A~~l~~~~~----~Vtlv~~~~  179 (321)
T PRK10262        135 -------------ACATCDGF--------FYRNQKV--------AVIGGGN-T-AVEEALYLSNIAS----EVHLIHRRD  179 (321)
T ss_pred             -------------EeecCCHH--------HcCCCEE--------EEECCCH-H-HHHHHHHHHhhCC----EEEEEEECC
Confidence                         00000100        0112122        2233332 1 2223334555553    599999887


Q ss_pred             cCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC---EEEEEeCC---CceEEeecEEEECCCCCchhhhhcCCCCC
Q psy8791         261 VLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK---EAVFKSED---KTERLPYAIMHVTPPMGPVPELATSRLVD  334 (706)
Q Consensus       261 ~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~---~v~~~~~~---~g~~i~~D~vI~a~G~~~~~~~~~~~l~~  334 (706)
                      .+...+.+.+.+++.|++.||++++++.+.+++.++.   .+++...+   +.+++++|.|||++|.+|+..+.+.++..
T Consensus       180 ~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~  259 (321)
T PRK10262        180 GFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLEL  259 (321)
T ss_pred             ccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccc
Confidence            6544566778888999999999999999999987653   23443221   23579999999999999997766656644


Q ss_pred             CCCceeeCcccc----ccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         335 QSGYVNVDKATL----QHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       335 ~~G~i~vd~~~l----~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      ++|+|.||+ ++    +.|+.|+|||+|||+..+. +....|..+|..||..|.+.+.+.
T Consensus       260 ~~g~i~vd~-~~~~~~~~t~~~~VyA~GD~~~~~~-~~~~~A~~~g~~Aa~~~~~~l~~~  317 (321)
T PRK10262        260 ENGYIKVQS-GIHGNATQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDGL  317 (321)
T ss_pred             cCCEEEECC-CCcccccccCCCCEEECeeccCCCc-ceEEEEehhHHHHHHHHHHHHHhc
Confidence            679999997 22    3489999999999997542 344458999999999999988654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.95  E-value=1.6e-25  Score=246.35  Aligned_cols=282  Identities=18%  Similarity=0.209  Sum_probs=189.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC------ccccc-------------ccCccc--------cC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ------PMFTL-------------IGGGMK--------KL   83 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~------p~~~~-------------~~~~~~--------~~   83 (706)
                      ++|+|||||+||++||.+|++.  |.+|+|||+++...-+      |.-..             ...|..        +.
T Consensus         1 ~~vvVIG~G~aG~~aA~~~~~~--g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          1 SKLVVIGGGPAGYVAAITAAQN--GKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            3899999999999999999998  8999999998642111      21000             000110        10


Q ss_pred             cccc-----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCCC-eEEEecEEEEccccccccCCCCCCcccccc
Q psy8791          84 SDSR-----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAG-SEISYEYMIVASGIQMYYDRVKGPSALINA  150 (706)
Q Consensus        84 ~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g-~~~~yd~lviAtG~~~~~~~~~g~~~~~~~  150 (706)
                      +.+.           .....++ ..+++++++++..+|+....|..+++ .+++||+||||||+.+..+++++.+     
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~-----  153 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFD-----  153 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCC-----
Confidence            1110           0111122 25899999999888765545555455 4699999999999998777666621     


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                                      ..      .+   ++...+..    +...         +...+.++|+
T Consensus       154 --------------------------------~~------~v---~~~~~~~~----~~~~---------~~~vvIIGgG  179 (458)
T PRK06912        154 --------------------------------GK------WI---INSKHAMS----LPSI---------PSSLLIVGGG  179 (458)
T ss_pred             --------------------------------CC------eE---EcchHHhC----cccc---------CCcEEEECCC
Confidence                                            00      00   01111110    1111         1122334444


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCce
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTE  308 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~  308 (706)
                      +.  +......+.+.|.    +|+++++.+.+++  ++++.+.+.+.|+++||+++++++|.+++.++..+.+...++..
T Consensus       180 ~i--G~E~A~~l~~~g~----~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~  253 (458)
T PRK06912        180 VI--GCEFASIYSRLGT----KVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQ  253 (458)
T ss_pred             HH--HHHHHHHHHHcCC----eEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceE
Confidence            32  2222334565653    4999999988886  67888999999999999999999999998766555554321224


Q ss_pred             EEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         309 RLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       309 ~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      ++++|.+|+|+|.+|+..   +...++ .+++| +.||+ ++| |+.|||||+|||+..  ++++..|..||+++|.|+.
T Consensus       254 ~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~-~~~-ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~  328 (458)
T PRK06912        254 EVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNE-HMQ-TNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHAS  328 (458)
T ss_pred             EEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCC-Cee-cCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHc
Confidence            799999999999999953   344566 45556 99999 688 899999999999974  4688899999999999984

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.94  E-value=2.7e-25  Score=245.75  Aligned_cols=281  Identities=17%  Similarity=0.206  Sum_probs=190.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc---------c---ccCccccCcccccccc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT---------L---IGGGMKKLSDSRRPMK   91 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~---------~---~~~~~~~~~~~~~~~~   91 (706)
                      +||+|||||+||++||.+|+++  |.+|+|||+ +.....       |...         .   .............++.
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~--G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   78 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQL--GLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE   78 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence            7999999999999999999998  899999999 432221       1100         0   0000000000111111


Q ss_pred             ------------------ccc-CCCcEEEEceeEEEEcCCCEEEeCCC-eEEEecEEEEccccccccCCCC-CCcccccc
Q psy8791          92 ------------------SVL-PSGATWVKDKIVSFDPENNRVRTQAG-SEISYEYMIVASGIQMYYDRVK-GPSALINA  150 (706)
Q Consensus        92 ------------------~~~-~~~v~~i~~~v~~id~~~~~v~~~~g-~~~~yd~lviAtG~~~~~~~~~-g~~~~~~~  150 (706)
                                        .++ ..+++++.+++..+++....+...++ .++.||+||+|||+.+..+++| +.+     
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~-----  153 (461)
T TIGR01350        79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFD-----  153 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCC-----
Confidence                              111 25789999998888765444554444 4799999999999998776665 310     


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                        ..                       .+++.+.+..    +.... .        ..+.++|+
T Consensus       154 ------------------~~-----------------------~~~~~~~~~~----~~~~~-~--------~vvViGgG  179 (461)
T TIGR01350       154 ------------------GE-----------------------VVITSTGALN----LKEVP-E--------SLVIIGGG  179 (461)
T ss_pred             ------------------Cc-----------------------eEEcchHHhc----cccCC-C--------eEEEECCC
Confidence                              00                       0011111110    01111 1        11223444


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc-
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT-  307 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g-  307 (706)
                      +.  +......+++.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||++++++.|.+++.+++.+.+.. .+| 
T Consensus       180 ~~--g~e~A~~l~~~g~----~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~-~~g~  252 (461)
T TIGR01350       180 VI--GIEFASIFASLGS----KVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYEN-KGGE  252 (461)
T ss_pred             HH--HHHHHHHHHHcCC----cEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEE-eCCc
Confidence            32  2223344666664    4999999988876  678888999999999999999999999986655555433 245 


Q ss_pred             -eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         308 -ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       308 -~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                       +++++|.+|+|+|.+|+..   +.+.++ .+++|++.||+ ++| ++.|+|||+|||+..  ++++..|..||+.+|+|
T Consensus       253 ~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~-t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~  328 (461)
T TIGR01350       253 TETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDE-YMR-TNVPGIYAIGDVIGG--PMLAHVASHEGIVAAEN  328 (461)
T ss_pred             EEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCC-Ccc-cCCCCEEEeeecCCC--cccHHHHHHHHHHHHHH
Confidence             5799999999999999954   566677 67889999998 788 789999999999975  45888999999999999


Q ss_pred             HH
Q psy8791         383 LS  384 (706)
Q Consensus       383 i~  384 (706)
                      |.
T Consensus       329 i~  330 (461)
T TIGR01350       329 IA  330 (461)
T ss_pred             Hc
Confidence            95

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.94  E-value=4.3e-25  Score=243.73  Aligned_cols=282  Identities=16%  Similarity=0.196  Sum_probs=184.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------ccccccc-----------CccccC-ccccccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTLIG-----------GGMKKL-SDSRRPM   90 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~~~-----------~~~~~~-~~~~~~~   90 (706)
                      .+||+|||||+||++||.+|+++  |.+|+|||++.. ...       |.-..+.           ...... .....++
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~~~-GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~   80 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKKYW-GGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDY   80 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC-CCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCH
Confidence            47999999999999999999998  899999998632 111       2100000           000000 0011111


Q ss_pred             c------------------ccc-CCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCCccccc
Q psy8791          91 K------------------SVL-PSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGPSALIN  149 (706)
Q Consensus        91 ~------------------~~~-~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~~~~~~  149 (706)
                      .                  .++ ..+++.+.++...++...-.|...+|  .++.||+||||||+.+..  +||.+    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~--~pg~~----  154 (466)
T PRK07818         81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRL--LPGTS----  154 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCC--CCCCC----
Confidence            0                  111 13667777665555433223333444  368999999999999865  36621    


Q ss_pred             ccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCC
Q psy8791         150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGG  229 (706)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g  229 (706)
                                                     +..       .+   ++.+..  .   +....        +...+.++|
T Consensus       155 -------------------------------~~~-------~v---~~~~~~--~---~~~~~--------~~~vvVIGg  180 (466)
T PRK07818        155 -------------------------------LSE-------NV---VTYEEQ--I---LSREL--------PKSIVIAGA  180 (466)
T ss_pred             -------------------------------CCC-------cE---EchHHH--h---ccccC--------CCeEEEECC
Confidence                                           000       00   011100  0   00011        112223344


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC-CC
Q psy8791         230 APMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE-DK  306 (706)
Q Consensus       230 ~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~-~~  306 (706)
                      +..  +......+++.|.    +|+++++.+++++  ++++.+.+++.|+++||+++++++|++++.+++.+..... .+
T Consensus       181 G~i--g~E~A~~l~~~G~----~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~  254 (466)
T PRK07818        181 GAI--GMEFAYVLKNYGV----DVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKD  254 (466)
T ss_pred             cHH--HHHHHHHHHHcCC----eEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecC
Confidence            422  2333445666664    4999999888887  6788899999999999999999999999876544332211 23


Q ss_pred             c--eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHH
Q psy8791         307 T--ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY  380 (706)
Q Consensus       307 g--~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a  380 (706)
                      |  +++++|.||+|+|.+|+..   +.+.++ ++++|++.||+ ++| |+.|+|||+|||+..  ++++..|..||+++|
T Consensus       255 g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~-Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa  330 (466)
T PRK07818        255 GKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD-YMR-TNVPHIYAIGDVTAK--LQLAHVAEAQGVVAA  330 (466)
T ss_pred             CCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCC-Ccc-cCCCCEEEEeecCCC--cccHhHHHHHHHHHH
Confidence            4  5799999999999999954   456777 67789999999 688 899999999999975  458899999999999


Q ss_pred             HHHH
Q psy8791         381 DNLS  384 (706)
Q Consensus       381 ~ni~  384 (706)
                      +||.
T Consensus       331 ~~i~  334 (466)
T PRK07818        331 ETIA  334 (466)
T ss_pred             HHHc
Confidence            9995

>PRK13748 putative mercuric reductase; Provisional

Probab=99.94  E-value=3.8e-25  Score=250.48  Aligned_cols=281  Identities=17%  Similarity=0.248  Sum_probs=192.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc------------ccc--Ccc------c
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT------------LIG--GGM------K   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~------------~~~--~~~------~   81 (706)
                      .++||+|||||+||++||.+|++.  |.+|+|||++. ....       |...            ...  .+.      .
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~--G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~  173 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ--GARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI  173 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence            468999999999999999999999  89999999874 2111       1100            000  011      0


Q ss_pred             cCccccc------------ccccccC-C-CcEEEEceeEEEEcCCCEEEeCCCe--EEEecEEEEccccccccCCCCCCc
Q psy8791          82 KLSDSRR------------PMKSVLP-S-GATWVKDKIVSFDPENNRVRTQAGS--EISYEYMIVASGIQMYYDRVKGPS  145 (706)
Q Consensus        82 ~~~~~~~------------~~~~~~~-~-~v~~i~~~v~~id~~~~~v~~~~g~--~~~yd~lviAtG~~~~~~~~~g~~  145 (706)
                      ..+.+..            .+..++. . ++++++++++.+|+....|.+.+|.  ++.||+||+|||+.+..|++||.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~  253 (561)
T PRK13748        174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK  253 (561)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCC
Confidence            0111100            0112222 2 7999999999988766566666653  689999999999999999999831


Q ss_pred             ccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCe
Q psy8791         146 ALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPI  225 (706)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v  225 (706)
                                                           ..      .+   ++...  .+.  ....         +...+
T Consensus       254 -------------------------------------~~------~~---~~~~~--~~~--~~~~---------~~~vv  274 (561)
T PRK13748        254 -------------------------------------ET------PY---WTSTE--ALV--SDTI---------PERLA  274 (561)
T ss_pred             -------------------------------------cc------ce---EccHH--Hhh--cccC---------CCeEE
Confidence                                                 00      00   00000  000  0011         11122


Q ss_pred             eeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe
Q psy8791         226 KCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS  303 (706)
Q Consensus       226 ~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~  303 (706)
                      .++|+..  +......+.+.|.    +|+++++.. +++  ++++.+.+++.|++.||++++++.+.+++.+++.+... 
T Consensus       275 ViGgG~i--g~E~A~~l~~~g~----~Vtli~~~~-~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~-  346 (561)
T PRK13748        275 VIGSSVV--ALELAQAFARLGS----KVTILARST-LFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLT-  346 (561)
T ss_pred             EECCCHH--HHHHHHHHHHcCC----EEEEEecCc-cccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEE-
Confidence            2344322  2223345666664    499998753 443  67899999999999999999999999998655544433 


Q ss_pred             CCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHH
Q psy8791         304 EDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVV  379 (706)
Q Consensus       304 ~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~  379 (706)
                      +++ .++++|.||+|+|.+||..   +++.++ .+++|+|.||+ ++| |+.|||||+|||+..+  .....|..||+++
T Consensus       347 ~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~-Ts~~~IyA~GD~~~~~--~~~~~A~~~g~~a  421 (561)
T PRK13748        347 TGH-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ-GMR-TSVPHIYAAGDCTDQP--QFVYVAAAAGTRA  421 (561)
T ss_pred             ecC-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC-Ccc-cCCCCEEEeeecCCCc--cchhHHHHHHHHH
Confidence            223 4699999999999999954   355677 67889999999 688 8999999999999864  4777899999999


Q ss_pred             HHHHH
Q psy8791         380 YDNLS  384 (706)
Q Consensus       380 a~ni~  384 (706)
                      |.||.
T Consensus       422 a~~i~  426 (561)
T PRK13748        422 AINMT  426 (561)
T ss_pred             HHHHc
Confidence            99994

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.94  E-value=2.7e-25  Score=245.74  Aligned_cols=283  Identities=18%  Similarity=0.241  Sum_probs=188.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-------ccccc-------------cCccc------c
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-------MFTLI-------------GGGMK------K   82 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-------~~~~~-------------~~~~~------~   82 (706)
                      ..+||+|||||+||++||.+|+++  |.+|+|||++.. ..++       .-..+             ..+..      +
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKGKL-GGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD   79 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCC-CcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            468999999999999999999998  899999998642 2221       10000             00000      0


Q ss_pred             Cccc-----------cccccccc-CCCcEEEEceeEEEEcC-------CCEEEeCCC--eEEEecEEEEccccccccCCC
Q psy8791          83 LSDS-----------RRPMKSVL-PSGATWVKDKIVSFDPE-------NNRVRTQAG--SEISYEYMIVASGIQMYYDRV  141 (706)
Q Consensus        83 ~~~~-----------~~~~~~~~-~~~v~~i~~~v~~id~~-------~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~  141 (706)
                      ...+           ...+.+++ ..++++++++++.+|+.       ...|.+.+|  .++.||+||+|||+.+..+  
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~--  157 (472)
T PRK05976         80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL--  157 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC--
Confidence            0000           00111222 25899999999999987       445666666  5799999999999988643  


Q ss_pred             CCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecC
Q psy8791         142 KGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFP  221 (706)
Q Consensus       142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~  221 (706)
                      |+.+                     +...                    .+   ++.+.+..    +....         
T Consensus       158 p~~~---------------------~~~~--------------------~~---~~~~~~~~----~~~~~---------  180 (472)
T PRK05976        158 PGLP---------------------FDGE--------------------YV---ISSDEALS----LETLP---------  180 (472)
T ss_pred             CCCC---------------------CCCc--------------------eE---EcchHhhC----ccccC---------
Confidence            4411                     0000                    00   01111110    11111         


Q ss_pred             CCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeC--CCC
Q psy8791         222 ATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDL--ANK  297 (706)
Q Consensus       222 ~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~  297 (706)
                      ...+.++|++.  +......+.+.|.    +|+++++.+.+++  ++.+.+.+++.|+++||++++++.|.+++.  +++
T Consensus       181 ~~vvIIGgG~~--G~E~A~~l~~~g~----~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~  254 (472)
T PRK05976        181 KSLVIVGGGVI--GLEWASMLADFGV----EVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGG  254 (472)
T ss_pred             CEEEEECCCHH--HHHHHHHHHHcCC----eEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCC
Confidence            11223344432  2223344566653    4999999988876  678888999999999999999999999974  333


Q ss_pred             EEEEEeCCCc--eEEeecEEEECCCCCchhh---hhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHH
Q psy8791         298 EAVFKSEDKT--ERLPYAIMHVTPPMGPVPE---LATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAV  372 (706)
Q Consensus       298 ~v~~~~~~~g--~~i~~D~vI~a~G~~~~~~---~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a  372 (706)
                       +....+.+|  +++++|.+|+|+|.+|+..   +...++..++|++.||+ +++ |+.|||||+|||+..  ++++..|
T Consensus       255 -~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~-~l~-ts~~~IyAiGD~~~~--~~~~~~A  329 (472)
T PRK05976        255 -VLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD-FCQ-TKERHIYAIGDVIGE--PQLAHVA  329 (472)
T ss_pred             -EEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC-Ccc-cCCCCEEEeeecCCC--cccHHHH
Confidence             333322344  4799999999999999953   23345544579999999 688 889999999999865  4578899


Q ss_pred             HHhHHHHHHHHH
Q psy8791         373 AGQCKVVYDNLS  384 (706)
Q Consensus       373 ~~qg~~~a~ni~  384 (706)
                      ..||+.+|+||.
T Consensus       330 ~~~g~~aa~~i~  341 (472)
T PRK05976        330 MAEGEMAAEHIA  341 (472)
T ss_pred             HHHHHHHHHHHc
Confidence            999999999983

>PRK14727 putative mercuric reductase; Provisional

Probab=99.94  E-value=1e-24  Score=241.02  Aligned_cols=282  Identities=17%  Similarity=0.205  Sum_probs=189.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc------------ccc-Ccc------cc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT------------LIG-GGM------KK   82 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~------------~~~-~~~------~~   82 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|||+++.....       |...            ... .+.      .+
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~--g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   92 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEH--GARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID   92 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence            468999999999999999999998  8999999997432221       1100            000 000      00


Q ss_pred             Cccc-------cc-----ccccccC--CCcEEEEceeEEEEcCCCEEEeCCCe--EEEecEEEEccccccccCCCCCCcc
Q psy8791          83 LSDS-------RR-----PMKSVLP--SGATWVKDKIVSFDPENNRVRTQAGS--EISYEYMIVASGIQMYYDRVKGPSA  146 (706)
Q Consensus        83 ~~~~-------~~-----~~~~~~~--~~v~~i~~~v~~id~~~~~v~~~~g~--~~~yd~lviAtG~~~~~~~~~g~~~  146 (706)
                      ...+       ..     .+..++.  .+++++++++.-++...-.|...+|.  ++.||+||||||+.+..|++||.+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~-  171 (479)
T PRK14727         93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM-  171 (479)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcC-
Confidence            0000       00     0122222  37899998887777654455555653  689999999999999999999831 


Q ss_pred             cccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCee
Q psy8791         147 LINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIK  226 (706)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~  226 (706)
                                                          +.      .+   ++...  .+..  ...         +...+.
T Consensus       172 ------------------------------------~~------~~---~~~~~--~l~~--~~~---------~k~vvV  193 (479)
T PRK14727        172 ------------------------------------DT------PY---WTSTE--ALFS--DEL---------PASLTV  193 (479)
T ss_pred             ------------------------------------cc------ce---ecchH--Hhcc--ccC---------CCeEEE
Confidence                                                00      00   00000  0000  001         111122


Q ss_pred             eCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC
Q psy8791         227 CGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE  304 (706)
Q Consensus       227 ~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~  304 (706)
                      ++|+. . +......+.+.|.    +|+++++. .+++  ++.+.+.+++.|++.||++++++++++++.+++.+.+. +
T Consensus       194 IGgG~-i-G~E~A~~l~~~G~----~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~-~  265 (479)
T PRK14727        194 IGSSV-V-AAEIAQAYARLGS----RVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLT-T  265 (479)
T ss_pred             ECCCH-H-HHHHHHHHHHcCC----EEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEE-E
Confidence            33332 2 2223344566664    48999875 4544  67888999999999999999999999997655544443 2


Q ss_pred             CCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHH
Q psy8791         305 DKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY  380 (706)
Q Consensus       305 ~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a  380 (706)
                      ++ .++++|.+|+|+|.+||..   ++..++ .+++|+|.||+ ++| |+.|||||+|||+..+  ..+..|..||+.+|
T Consensus       266 ~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~-~~~-Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~aa  340 (479)
T PRK14727        266 GH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP-AME-TSAPDIYAAGDCSDLP--QFVYVAAAAGSRAG  340 (479)
T ss_pred             cC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC-Cee-cCCCCEEEeeecCCcc--hhhhHHHHHHHHHH
Confidence            33 4699999999999999954   345677 67789999999 688 8999999999999864  46778999999999


Q ss_pred             HHHH
Q psy8791         381 DNLS  384 (706)
Q Consensus       381 ~ni~  384 (706)
                      .||.
T Consensus       341 ~~i~  344 (479)
T PRK14727        341 INMT  344 (479)
T ss_pred             HHHc
Confidence            9994

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.94  E-value=4.2e-25  Score=242.41  Aligned_cols=283  Identities=16%  Similarity=0.231  Sum_probs=188.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC--------CCcccC-------cccc---------cc----cCccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT--------DDHYYQ-------PMFT---------LI----GGGMK   81 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~--------~~~~~~-------p~~~---------~~----~~~~~   81 (706)
                      .+||+|||||+||..||..+++.. |.+|+|||++        +.+...       |.-.         ..    ..+..
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            589999999999999999999951 6899999974        222221       1100         00    00000


Q ss_pred             --------cCcc-----------cccccccccC--CCcEEEEceeEEEEcCCCEEEeCC--------CeEEEecEEEEcc
Q psy8791          82 --------KLSD-----------SRRPMKSVLP--SGATWVKDKIVSFDPENNRVRTQA--------GSEISYEYMIVAS  132 (706)
Q Consensus        82 --------~~~~-----------~~~~~~~~~~--~~v~~i~~~v~~id~~~~~v~~~~--------g~~~~yd~lviAt  132 (706)
                              +...           +...+..+++  .++++++++..-++  .++|.+.+        .+++.||+|||||
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~lIIAT  159 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPKSAVKERLQAEHILLAT  159 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCCCCcceEEECCEEEEec
Confidence                    0000           0011122233  48999999876555  45565532        2479999999999


Q ss_pred             ccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhcc
Q psy8791         133 GIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQ  212 (706)
Q Consensus       133 G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~  212 (706)
                      |+.+..|++||.+                                     ..+           +.+.+..    +... 
T Consensus       160 Gs~p~~p~i~G~~-------------------------------------~~~-----------~~~~~~~----~~~~-  186 (486)
T TIGR01423       160 GSWPQMLGIPGIE-------------------------------------HCI-----------SSNEAFY----LDEP-  186 (486)
T ss_pred             CCCCCCCCCCChh-------------------------------------hee-----------chhhhhc----cccC-
Confidence            9999989999821                                     100           1111110    0011 


Q ss_pred             CCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceE
Q psy8791         213 SGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALV  290 (706)
Q Consensus       213 ~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~  290 (706)
                              +...+.++|+... .+++. .+.... ....+|+++++.+.+++  ++++.+.+++.|+++||++++++.++
T Consensus       187 --------~~~vvIIGgG~iG-~E~A~-~~~~l~-~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~  255 (486)
T TIGR01423       187 --------PRRVLTVGGGFIS-VEFAG-IFNAYK-PRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPA  255 (486)
T ss_pred             --------CCeEEEECCCHHH-HHHHH-HHHHhc-cCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence                    1112233444221 12221 222221 01236999999998876  78899999999999999999999999


Q ss_pred             EEeCCCCE-EEEEeCCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCC
Q psy8791         291 EIDLANKE-AVFKSEDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT  365 (706)
Q Consensus       291 ~i~~~~~~-v~~~~~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~  365 (706)
                      +++.+++. ..+ .+++|+++++|.+|+++|.+|+..   +.+.++ .+++|+|.||+ ++| |+.|||||+|||+..  
T Consensus       256 ~i~~~~~~~~~v-~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~-~l~-Ts~~~IyA~GDv~~~--  330 (486)
T TIGR01423       256 KVTLNADGSKHV-TFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDE-FSR-TNVPNIYAIGDVTDR--  330 (486)
T ss_pred             EEEEcCCceEEE-EEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCC-CCc-CCCCCEEEeeecCCC--
Confidence            99754322 222 224677899999999999999954   345677 67889999999 688 899999999999975  


Q ss_pred             CchHHHHHHhHHHHHHHHH
Q psy8791         366 SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       366 ~~~~~~a~~qg~~~a~ni~  384 (706)
                      +..+..|..||+++|+||.
T Consensus       331 ~~l~~~A~~qG~~aa~ni~  349 (486)
T TIGR01423       331 VMLTPVAINEGAAFVDTVF  349 (486)
T ss_pred             cccHHHHHHHHHHHHHHHh
Confidence            4588889999999999995

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.94  E-value=8.2e-26  Score=242.30  Aligned_cols=297  Identities=20%  Similarity=0.262  Sum_probs=224.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcC-CCeEEEEcCCCCcccC-cccccccCccccCccccccccccc-CCCcEEEE-cee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLG-KGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVK-DKI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~-~~v  105 (706)
                      +.++||||.|.||..+..++.+..+ .++||++-..++..|. +++..+..+..+.+++...-.++. +.+++++. ..|
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            4689999999999999999998543 4799999999887666 566666666666677665554544 47999877 689


Q ss_pred             EEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         106 VSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                      +.||+++++|+++.|.++.||.||+||||.|..+++||.+                 .+..|..|               
T Consensus        83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~-----------------~~~v~~~R---------------  130 (793)
T COG1251          83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSD-----------------LPGVFVYR---------------  130 (793)
T ss_pred             EEeccCcceEEccCCcEeecceeEEecCccccccCCCCCC-----------------CCCeeEEe---------------
Confidence            9999999999999999999999999999999999999932                 22222222               


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-  264 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-  264 (706)
                                 +.+....+.+. ..-.+         .+++++|+..  ...+..-|...|..    +++++..+.++. 
T Consensus       131 -----------~i~D~~am~~~-ar~~~---------~avVIGGGLL--GlEaA~~L~~~Gm~----~~Vvh~~~~lMer  183 (793)
T COG1251         131 -----------TIDDVEAMLDC-ARNKK---------KAVVIGGGLL--GLEAARGLKDLGME----VTVVHIAPTLMER  183 (793)
T ss_pred             -----------cHHHHHHHHHH-HhccC---------CcEEEccchh--hhHHHHHHHhCCCc----eEEEeecchHHHH
Confidence                       23333333333 22222         2345555522  12223346666654    899998888874 


Q ss_pred             --chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhh-hcCCCCCCCCceee
Q psy8791         265 --SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPEL-ATSRLVDQSGYVNV  341 (706)
Q Consensus       265 --~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~-~~~~l~~~~G~i~v  341 (706)
                        ++.....+++.+.++|++++++...+++..++ .+..+...||+.+++|+|||++|++||..+ ..+|+.-.+| |.|
T Consensus       184 QLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~-~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrG-Ivv  261 (793)
T COG1251         184 QLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGED-KVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRG-IVV  261 (793)
T ss_pred             hhhhHHHHHHHHHHHhhcceeecccchhhhhcCc-ceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCC-eee
Confidence              67788889999999999999999888887643 455566679999999999999999999555 4568844445 999


Q ss_pred             CccccccCCCCCEEEccccCCCCC--CchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         342 DKATLQHVKYSNVFAIGDCSNLPT--SKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       342 d~~~l~~~~~~~Ifa~GD~~~~~~--~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      |+ ++| |+.|+|||+|+|+....  ..+...+..|++++|+++.....+
T Consensus       262 nd-~mq-TsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~  309 (793)
T COG1251         262 ND-YMQ-TSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE  309 (793)
T ss_pred             cc-ccc-ccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccc
Confidence            99 688 99999999999998743  356778999999999999755443

>PRK07846 mycothione reductase; Reviewed

Probab=99.94  E-value=3.3e-25  Score=242.52  Aligned_cols=277  Identities=18%  Similarity=0.229  Sum_probs=188.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC------cccc---------cc----cCcc------ccCcc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ------PMFT---------LI----GGGM------KKLSD   85 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~------p~~~---------~~----~~~~------~~~~~   85 (706)
                      +|++|||||+||.+||..  ..  |.+|+|||++..-.-+      |.-.         ..    ..+.      .+...
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~--G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   77 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD   77 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HC--CCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence            799999999999998865  34  7899999986531111      2100         00    0010      00000


Q ss_pred             -----------cccc-cccc-c-CCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCccccccc
Q psy8791          86 -----------SRRP-MKSV-L-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINAL  151 (706)
Q Consensus        86 -----------~~~~-~~~~-~-~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~  151 (706)
                                 +... .... + ..+++++.++...+  +.++|.+.+|+++.||+||||||+++..|++||.+      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~------  149 (451)
T PRK07846         78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADS------  149 (451)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcC------
Confidence                       1000 1111 2 36899999988777  46788888887899999999999999988888821      


Q ss_pred             ccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChh
Q psy8791         152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP  231 (706)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~  231 (706)
                                                     ..      .+   ++.+.+..    +.... .+        .+.++|++
T Consensus       150 -------------------------------~~------~~---~~~~~~~~----l~~~~-~~--------vvIIGgG~  176 (451)
T PRK07846        150 -------------------------------GV------RY---HTSDTIMR----LPELP-ES--------LVIVGGGF  176 (451)
T ss_pred             -------------------------------Cc------cE---EchHHHhh----hhhcC-Ce--------EEEECCCH
Confidence                                           00      00   11111111    11111 11        12234442


Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceE
Q psy8791         232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTER  309 (706)
Q Consensus       232 ~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~  309 (706)
                      .  +......+++.|.    +|+++++.+.+++  ++++.+.+.+.+ +.||++++++++++++.+++.+.+. .++|++
T Consensus       177 i--G~E~A~~l~~~G~----~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~-~~~g~~  248 (451)
T PRK07846        177 I--AAEFAHVFSALGV----RVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLR-LDDGST  248 (451)
T ss_pred             H--HHHHHHHHHHcCC----eEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEE-ECCCcE
Confidence            2  2223344666664    4999999988875  577777776654 5689999999999998665545443 346789


Q ss_pred             EeecEEEECCCCCchhhh---hcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         310 LPYAIMHVTPPMGPVPEL---ATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       310 i~~D~vI~a~G~~~~~~~---~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      +++|.|++|+|.+|+..+   .+.++ .+++|++.||+ ++| |+.|||||+|||+..+  ++++.|.+||+++|+||.
T Consensus       249 i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~-~~~-Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~  323 (451)
T PRK07846        249 VEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE-YQR-TSAEGVFALGDVSSPY--QLKHVANHEARVVQHNLL  323 (451)
T ss_pred             eecCEEEEEECCccCccccCchhcCceECCCCcEeECC-Ccc-cCCCCEEEEeecCCCc--cChhHHHHHHHHHHHHHc
Confidence            999999999999999543   45677 67889999999 688 9999999999999863  578899999999999995

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.94  E-value=8.2e-25  Score=240.90  Aligned_cols=282  Identities=16%  Similarity=0.226  Sum_probs=183.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccccc-------------c---cC---ccccCc-ccccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL-------------I---GG---GMKKLS-DSRRP   89 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~-------------~---~~---~~~~~~-~~~~~   89 (706)
                      ++||+|||||+||++||.+++++  |.+|+|||+++....++....             .   ..   .....+ ....+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~   80 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN   80 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence            47999999999999999999999  999999998543333221100             0   00   000000 00001


Q ss_pred             c------------------ccccC-CCcEEEEceeEEEEcCCC-EEEeCCCe--EEEecEEEEccccccccCCCCCCccc
Q psy8791          90 M------------------KSVLP-SGATWVKDKIVSFDPENN-RVRTQAGS--EISYEYMIVASGIQMYYDRVKGPSAL  147 (706)
Q Consensus        90 ~------------------~~~~~-~~v~~i~~~v~~id~~~~-~v~~~~g~--~~~yd~lviAtG~~~~~~~~~g~~~~  147 (706)
                      +                  ..+++ .+++++.++. .++.+++ .|...+|.  +++||+||||||+++.  .+||.+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ipg~~--  155 (466)
T PRK06115         81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPGVT--  155 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCCCCC--
Confidence            1                  11122 4789998875 4444333 33344553  6899999999999874  467721  


Q ss_pred             ccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeee
Q psy8791         148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKC  227 (706)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~  227 (706)
                                                       +..    .  .+   .+.+.+..    +...         +...+.+
T Consensus       156 ---------------------------------~~~----~--~~---~~~~~~~~----~~~~---------~~~vvII  180 (466)
T PRK06115        156 ---------------------------------IDN----Q--RI---IDSTGALS----LPEV---------PKHLVVI  180 (466)
T ss_pred             ---------------------------------CCC----C--eE---ECHHHHhC----CccC---------CCeEEEE
Confidence                                             000    0  00   11111100    0011         1122233


Q ss_pred             CChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEE--Ee
Q psy8791         228 GGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVF--KS  303 (706)
Q Consensus       228 ~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~--~~  303 (706)
                      +|++.  +......+.+.|.    +|+++++.+++++  ++++.+.+++.|++.||++++++.+.+++.+++.+.+  ..
T Consensus       181 GgG~i--g~E~A~~l~~~G~----~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~  254 (466)
T PRK06115        181 GAGVI--GLELGSVWRRLGA----QVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEP  254 (466)
T ss_pred             CCCHH--HHHHHHHHHHcCC----eEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEE
Confidence            44432  2223345666664    4999999988876  6778899999999999999999999999865443432  21


Q ss_pred             C--CCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHH
Q psy8791         304 E--DKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK  377 (706)
Q Consensus       304 ~--~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~  377 (706)
                      .  ++++++++|.|++++|.+|+..   +...++ .+++| +.||+ +++ |+.|+|||+|||+..  |++++.|..||+
T Consensus       255 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~-~~~-Ts~~~IyA~GD~~~~--~~la~~A~~~g~  329 (466)
T PRK06115        255 AAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLAND-HHR-TSVPGVWVIGDVTSG--PMLAHKAEDEAV  329 (466)
T ss_pred             cCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECC-Cee-cCCCCEEEeeecCCC--cccHHHHHHHHH
Confidence            1  2346899999999999999954   334566 55667 67898 577 899999999999986  458999999999


Q ss_pred             HHHHHHH
Q psy8791         378 VVYDNLS  384 (706)
Q Consensus       378 ~~a~ni~  384 (706)
                      ++|+||.
T Consensus       330 ~aa~~i~  336 (466)
T PRK06115        330 ACIERIA  336 (466)
T ss_pred             HHHHHHc
Confidence            9999995

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.94  E-value=1.7e-25  Score=244.58  Aligned_cols=318  Identities=17%  Similarity=0.125  Sum_probs=189.9

Q ss_pred             Cccccccccccccccc---cccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCc
Q psy8791           3 SLKLCPLKSYNLLSSS---FSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGG   79 (706)
Q Consensus         3 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~   79 (706)
                      .+.|.+++.|......   ............++|+|||||+|||+||..|+++  +++|+|||+++....... ..++..
T Consensus       103 ~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~--G~~V~vie~~~~~GG~l~-~gip~~  179 (449)
T TIGR01316       103 PVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKA--GHSVTVFEALHKPGGVVT-YGIPEF  179 (449)
T ss_pred             CccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCcEee-ecCCCc
Confidence            4566666666543221   1111111233457999999999999999999998  899999999875321111 011111


Q ss_pred             cccCcccccccccccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEcccc-ccccCCCCCCcccccccccccccc
Q psy8791          80 MKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGI-QMYYDRVKGPSALINALGHCDLVR  158 (706)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~-~~~~~~~~g~~~~~~~~~~~~~~~  158 (706)
                      ....+.+......+...+++++.+.+.     .+.+++++. ...||+||+|||+ .+..+++||.+    ..|      
T Consensus       180 ~~~~~~~~~~~~~l~~~gv~~~~~~~v-----~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~----~~g------  243 (449)
T TIGR01316       180 RLPKEIVVTEIKTLKKLGVTFRMNFLV-----GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEE----LCG------  243 (449)
T ss_pred             cCCHHHHHHHHHHHHhCCcEEEeCCcc-----CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCC----CCC------
Confidence            111112222233444578999887643     233444443 3579999999998 68888888832    000      


Q ss_pred             cccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHH--hccCCCEEEecCCCCeeeCChhHHHHH
Q psy8791         159 SFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQ--HFQSGPVLYTFPATPIKCGGAPMKAVL  236 (706)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~g~~vv~~~~~~v~~~g~~~~~~~  236 (706)
                                                       +   ++............  .+.....-...+...++++|+.  .+.
T Consensus       244 ---------------------------------v---~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~--~a~  285 (449)
T TIGR01316       244 ---------------------------------V---YSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGN--TAV  285 (449)
T ss_pred             ---------------------------------c---EEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCH--HHH
Confidence                                             0   00000000000000  0000000000112223344442  233


Q ss_pred             HHHHHHHHcCCCCCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEE---EEEe---------
Q psy8791         237 IGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEA---VFKS---------  303 (706)
Q Consensus       237 ~~~~~l~~~g~~~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v---~~~~---------  303 (706)
                      ..+..+.+.|.    +|+++++....-. + ......+.+++.||++++++.+.++..+ ++.+   .+..         
T Consensus       286 d~A~~l~~~G~----~Vtlv~~~~~~~~-~-~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~  359 (449)
T TIGR01316       286 DSARTALRLGA----EVHCLYRRTREDM-T-ARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDS  359 (449)
T ss_pred             HHHHHHHHcCC----EEEEEeecCcccC-C-CCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCC
Confidence            33445666664    3888887654211 1 1223346678899999999999998753 3333   2220         


Q ss_pred             --------CCCceEEeecEEEECCCCCchhh-hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHH
Q psy8791         304 --------EDKTERLPYAIMHVTPPMGPVPE-LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA  373 (706)
Q Consensus       304 --------~~~g~~i~~D~vI~a~G~~~~~~-~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~  373 (706)
                              .++..++++|+||+++|+.|+.. +...++ .+++|+|.||+ +++ |+.|+|||+|||+..  +.++..|+
T Consensus       360 g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~-~~~-Ts~~~VfA~GD~~~g--~~~v~~Ai  435 (449)
T TIGR01316       360 GERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQR-TSIPGVFAGGDIILG--AATVIRAM  435 (449)
T ss_pred             CCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCC-CCc-cCCCCEEEecCCCCC--cHHHHHHH
Confidence                    01123799999999999999954 445677 67789999998 677 899999999999875  45788999


Q ss_pred             HhHHHHHHHHHHHH
Q psy8791         374 GQCKVVYDNLSAVM  387 (706)
Q Consensus       374 ~qg~~~a~ni~~~l  387 (706)
                      .||+.+|.+|.++|
T Consensus       436 ~~G~~AA~~I~~~L  449 (449)
T TIGR01316       436 GQGKRAAKSINEYL  449 (449)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.94  E-value=1.7e-24  Score=238.34  Aligned_cols=281  Identities=14%  Similarity=0.194  Sum_probs=185.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC--------CcccC-------cccc---------ccc-Cccc--c
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD--------DHYYQ-------PMFT---------LIG-GGMK--K   82 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~--------~~~~~-------p~~~---------~~~-~~~~--~   82 (706)
                      .+|+||||||+||+.||..+++.  |.+|+|||+..        .....       |.-.         ... ...+  .
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~--G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~   79 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY--GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN   79 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence            47999999999999999999998  89999999731        11111       1100         000 0000  0


Q ss_pred             Ccc-cc------------------cccccccC-CCcEEEEceeEEEEcCCCEEEeC--CC--eEEEecEEEEcccccccc
Q psy8791          83 LSD-SR------------------RPMKSVLP-SGATWVKDKIVSFDPENNRVRTQ--AG--SEISYEYMIVASGIQMYY  138 (706)
Q Consensus        83 ~~~-~~------------------~~~~~~~~-~~v~~i~~~v~~id~~~~~v~~~--~g--~~~~yd~lviAtG~~~~~  138 (706)
                      ... ..                  ..+..++. .++++++++..-+++.  +|.+.  +|  .+++||+||||||+.+..
T Consensus        80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~--~v~v~~~~g~~~~~~~d~lVIATGs~p~~  157 (484)
T TIGR01438        80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKH--RIKATNKKGKEKIYSAERFLIATGERPRY  157 (484)
T ss_pred             cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCC--EEEEeccCCCceEEEeCEEEEecCCCCCC
Confidence            000 00                  01112223 6899999998888754  44443  33  369999999999999998


Q ss_pred             CCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEE
Q psy8791         139 DRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLY  218 (706)
Q Consensus       139 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv  218 (706)
                      |++||.+  ++.                                             .+.+.+..    +....      
T Consensus       158 p~ipG~~--~~~---------------------------------------------~~~~~~~~----~~~~~------  180 (484)
T TIGR01438       158 PGIPGAK--ELC---------------------------------------------ITSDDLFS----LPYCP------  180 (484)
T ss_pred             CCCCCcc--cee---------------------------------------------ecHHHhhc----ccccC------
Confidence            9999831  000                                             00111110    00111      


Q ss_pred             ecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC
Q psy8791         219 TFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN  296 (706)
Q Consensus       219 ~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~  296 (706)
                         ...+.++|+..  +......+.+.|.    +|+++++ +.+++  ++++.+.+++.|+++||++++++.+.+++..+
T Consensus       181 ---~~vvIIGgG~i--G~E~A~~l~~~G~----~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~  250 (484)
T TIGR01438       181 ---GKTLVVGASYV--ALECAGFLAGIGL----DVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE  250 (484)
T ss_pred             ---CCEEEECCCHH--HHHHHHHHHHhCC----cEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC
Confidence               12223344422  2233345566664    3888886 45655  68899999999999999999999988887644


Q ss_pred             CEEEEEeCCC--ceEEeecEEEECCCCCchhh---hhcCCC-CCC-CCceeeCccccccCCCCCEEEccccCCCCCCchH
Q psy8791         297 KEAVFKSEDK--TERLPYAIMHVTPPMGPVPE---LATSRL-VDQ-SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTA  369 (706)
Q Consensus       297 ~~v~~~~~~~--g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~-~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~  369 (706)
                      +.+.+...++  ++++++|.||+++|.+||..   +++.++ .++ +|+|.||+ ++| |+.|+|||+|||+... +.++
T Consensus       251 ~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~-~~~-Ts~p~IyA~GDv~~~~-~~l~  327 (484)
T TIGR01438       251 AKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADE-EEQ-TNVPYIYAVGDILEDK-QELT  327 (484)
T ss_pred             CeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCC-Ccc-cCCCCEEEEEEecCCC-ccch
Confidence            4433322221  35799999999999999964   355677 444 59999999 677 8999999999999642 3577


Q ss_pred             HHHHHhHHHHHHHHH
Q psy8791         370 AAVAGQCKVVYDNLS  384 (706)
Q Consensus       370 ~~a~~qg~~~a~ni~  384 (706)
                      ..|..||+.+|+||.
T Consensus       328 ~~A~~~g~~aa~~i~  342 (484)
T TIGR01438       328 PVAIQAGRLLAQRLF  342 (484)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            889999999999995

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.93  E-value=1.5e-24  Score=239.58  Aligned_cols=280  Identities=17%  Similarity=0.220  Sum_probs=187.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c------------c---cc-Cc------cccC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T------------L---IG-GG------MKKL   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~------------~---~~-~~------~~~~   83 (706)
                      .+||||||||+||++||.+|++.  +.+|+|||++. +...+..    |            .   .. .+      ..+.
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~   79 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKL--GKKVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF   79 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence            47999999999999999999998  89999999943 2221110    0            0   00 00      0011


Q ss_pred             ccccc-----------cc-ccc-cCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccc
Q psy8791          84 SDSRR-----------PM-KSV-LPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINA  150 (706)
Q Consensus        84 ~~~~~-----------~~-~~~-~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~  150 (706)
                      ..+..           .+ ... ...+++++.+++..++.  +.+.+ ++.++.||+||+|||+.  .|.+||.+     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~-----  149 (460)
T PRK06292         80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV-NGERIEAKNIVIATGSR--VPPIPGVW-----  149 (460)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCc-----
Confidence            11100           01 111 12578888888777765  34555 56789999999999998  56778821     


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                                      .. ...  .+   ++.+.+..    +...         +...+.++|+
T Consensus       150 --------------------------------~~-~~~--~~---~~~~~~~~----~~~~---------~k~v~VIGgG  178 (460)
T PRK06292        150 --------------------------------LI-LGD--RL---LTSDDAFE----LDKL---------PKSLAVIGGG  178 (460)
T ss_pred             --------------------------------cc-CCC--cE---ECchHHhC----cccc---------CCeEEEECCC
Confidence                                            00 000  11   11111110    1111         1122233444


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-EEEEEe-CCC
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-EAVFKS-EDK  306 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~v~~~~-~~~  306 (706)
                      +.  +......+.+.|.    +|+++++.+.+++  ++++.+.+++.|+++ |++++++++.+++.+++ .+++.. .++
T Consensus       179 ~~--g~E~A~~l~~~g~----~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~  251 (460)
T PRK06292        179 VI--GLELGQALSRLGV----KVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGK  251 (460)
T ss_pred             HH--HHHHHHHHHHcCC----cEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCc
Confidence            32  2223344666664    4999999998886  678889999999999 99999999999986543 344321 234


Q ss_pred             ceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         307 TERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       307 g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                      ++++++|.+++++|.+|+..   ++..++ .+++|++.||+ ++| |+.|||||+|||+..  ++++..|..||+++|.|
T Consensus       252 ~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~-~~~-ts~~~IyA~GD~~~~--~~~~~~A~~qg~~aa~~  327 (460)
T PRK06292        252 TETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDE-HTQ-TSVPGIYAAGDVNGK--PPLLHEAADEGRIAAEN  327 (460)
T ss_pred             eEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECC-Ccc-cCCCCEEEEEecCCC--ccchhHHHHHHHHHHHH
Confidence            46799999999999999954   455677 67889999999 688 799999999999976  34788999999999999


Q ss_pred             HH
Q psy8791         383 LS  384 (706)
Q Consensus       383 i~  384 (706)
                      |.
T Consensus       328 i~  329 (460)
T PRK06292        328 AA  329 (460)
T ss_pred             hc
Confidence            95

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.93  E-value=1.1e-24  Score=244.13  Aligned_cols=292  Identities=17%  Similarity=0.200  Sum_probs=187.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc---cccccCcc-ccCccccccccccc-CCCcEEEEc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM---FTLIGGGM-KKLSDSRRPMKSVL-PSGATWVKD  103 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~---~~~~~~~~-~~~~~~~~~~~~~~-~~~v~~i~~  103 (706)
                      +.+||+|||||+|||+||.+|+++  +++|+|||+++.......   ....++.. .....+...+.+.. ..+++++.+
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~   80 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQA   80 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEecc
Confidence            458999999999999999999998  899999999763211110   11111100 11112222222222 358899889


Q ss_pred             eeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccch
Q psy8791         104 KIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGL  181 (706)
Q Consensus       104 ~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (706)
                      +|++++.+.+  .+.+.++ .+.||+||+|||+.+..+++||.+  +                  +..+           
T Consensus        81 ~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~--~------------------~~~~-----------  128 (555)
T TIGR03143        81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEE--E------------------FTGR-----------  128 (555)
T ss_pred             EEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHH--H------------------hCCc-----------
Confidence            9999998664  4555555 689999999999999989999921  0                  0000           


Q ss_pred             hhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc
Q psy8791         182 QEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV  261 (706)
Q Consensus       182 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~  261 (706)
                               .+......+.      .  .+.+.++        +.++|+..  +......+.+.|.    +|+++++.+.
T Consensus       129 ---------~v~~~~~~~~------~--~~~g~~V--------vVIGgG~~--g~E~A~~L~~~g~----~Vtli~~~~~  177 (555)
T TIGR03143       129 ---------GVAYCATCDG------E--FFTGMDV--------FVIGGGFA--AAEEAVFLTRYAS----KVTVIVREPD  177 (555)
T ss_pred             ---------eEEEEeecCh------h--hcCCCEE--------EEECCCHH--HHHHHHHHHccCC----EEEEEEeCCc
Confidence                     1110000000      0  0112222        23344432  2222334555553    5999998876


Q ss_pred             CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeCCCceEE----eecE----EEECCCCCchhhhhcCC
Q psy8791         262 LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSEDKTERL----PYAI----MHVTPPMGPVPELATSR  331 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g~~i----~~D~----vI~a~G~~~~~~~~~~~  331 (706)
                      +...+.   ...+.++.+||++++++.|.++..++..  +.+....+|++.    ++|.    |++++|++|+..+.+.+
T Consensus       178 ~~~~~~---~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~  254 (555)
T TIGR03143       178 FTCAKL---IAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGV  254 (555)
T ss_pred             cccCHH---HHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhh
Confidence            543222   2233445679999999999999875532  223333345432    3676    99999999997666655


Q ss_pred             C-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         332 L-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       332 l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      + ++++|+|.||+ +++ |+.|||||+|||+... +..+..|..||+.+|.||.+++.+.+
T Consensus       255 l~l~~~G~I~vd~-~~~-Ts~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~~l~~~~  312 (555)
T TIGR03143       255 VELDKRGYIPTNE-DME-TNVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAERYVKELK  312 (555)
T ss_pred             cccCCCCeEEeCC-ccc-cCCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHHHHHhhh
Confidence            6 67789999999 687 7999999999997542 34556899999999999999997654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12831 putative oxidoreductase; Provisional

Probab=99.93  E-value=1.9e-24  Score=236.66  Aligned_cols=321  Identities=15%  Similarity=0.131  Sum_probs=189.1

Q ss_pred             Ccccccccccccccc---ccccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCc
Q psy8791           3 SLKLCPLKSYNLLSS---SFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGG   79 (706)
Q Consensus         3 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~   79 (706)
                      .+.|+.++.|.....   +... ........++|+|||||+|||+||.+|+++  |++|+|+|+++....... ..++..
T Consensus       111 ~v~I~~l~r~~~~~~~~~~~~~-~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~--G~~V~v~e~~~~~GG~l~-~gip~~  186 (464)
T PRK12831        111 PVAIGKLERFVADWARENGIDL-SETEEKKGKKVAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEPGGVLV-YGIPEF  186 (464)
T ss_pred             CeehhHHHHHHHHHHHHcCCCC-CCCcCCCCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCCCCeee-ecCCCc
Confidence            466777777655322   1211 112334568999999999999999999998  899999998775321111 011111


Q ss_pred             cccCcccc-cccccccCCCcEEEEceeEEEEcCCCEEEeCCC-eEEEecEEEEcccc-ccccCCCCCCcccccccccccc
Q psy8791          80 MKKLSDSR-RPMKSVLPSGATWVKDKIVSFDPENNRVRTQAG-SEISYEYMIVASGI-QMYYDRVKGPSALINALGHCDL  156 (706)
Q Consensus        80 ~~~~~~~~-~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g-~~~~yd~lviAtG~-~~~~~~~~g~~~~~~~~~~~~~  156 (706)
                      ....+.+. ...+.+...++++..+....     +.+.+++. ..+.||+|++|||+ .+..+++||.+    ..|    
T Consensus       187 ~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~----~~g----  253 (464)
T PRK12831        187 RLPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGEN----LNG----  253 (464)
T ss_pred             cCCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcC----CcC----
Confidence            11111111 11233334688887765431     23334332 24579999999998 58888889832    000    


Q ss_pred             cccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccC-CCEEEecCCCCeeeCChhHHHH
Q psy8791         157 VRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQS-GPVLYTFPATPIKCGGAPMKAV  235 (706)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-g~~vv~~~~~~v~~~g~~~~~~  235 (706)
                               .                             ++...+.........+.. -......+...++++|+.  .+
T Consensus       254 ---------V-----------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~--va  293 (464)
T PRK12831        254 ---------V-----------------------------FSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN--VA  293 (464)
T ss_pred             ---------c-----------------------------EEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH--HH
Confidence                     0                             011111000000000000 000000112223344442  23


Q ss_pred             HHHHHHHHHcCCCCCcEEEEEeCCCc-CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEE---EEE--e-----
Q psy8791         236 LIGDEYLRKHKKRDAAKLTYCTGMGV-LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEA---VFK--S-----  303 (706)
Q Consensus       236 ~~~~~~l~~~g~~~~~~v~l~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v---~~~--~-----  303 (706)
                      ...+..+.+.|.    +|+++.+... -++ .. ...+ +.+++.||++++++.+.++..+ ++.+   .+.  .     
T Consensus       294 ~d~A~~l~r~Ga----~Vtlv~r~~~~~m~-a~-~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d  366 (464)
T PRK12831        294 MDAARTALRLGA----EVHIVYRRSEEELP-AR-VEEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPD  366 (464)
T ss_pred             HHHHHHHHHcCC----EEEEEeecCcccCC-CC-HHHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcC
Confidence            333445666664    3888876543 222 11 1222 3456789999999999998643 3333   221  0     


Q ss_pred             ----------CCCceEEeecEEEECCCCCchhhhh-c-CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHH
Q psy8791         304 ----------EDKTERLPYAIMHVTPPMGPVPELA-T-SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAA  370 (706)
Q Consensus       304 ----------~~~g~~i~~D~vI~a~G~~~~~~~~-~-~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~  370 (706)
                                .++..++++|+||+++|+.|+..+. . .++ .+++|++.||+++++ |+.|+|||+|||+..  +.+..
T Consensus       367 ~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~-Ts~pgVfAaGD~~~g--~~~v~  443 (464)
T PRK12831        367 ASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGL-TSKEGVFAGGDAVTG--AATVI  443 (464)
T ss_pred             CCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCc-cCCCCEEEeCCCCCC--chHHH
Confidence                      0112369999999999999996544 3 467 677899999983355 899999999999875  44788


Q ss_pred             HHHHhHHHHHHHHHHHHcCC
Q psy8791         371 AVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       371 ~a~~qg~~~a~ni~~~l~g~  390 (706)
                      .|+.+|+.+|.+|.++|.++
T Consensus       444 ~Ai~~G~~AA~~I~~~L~~~  463 (464)
T PRK12831        444 LAMGAGKKAAKAIDEYLSKK  463 (464)
T ss_pred             HHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999998764

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.93  E-value=6.7e-24  Score=234.43  Aligned_cols=283  Identities=17%  Similarity=0.222  Sum_probs=186.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC------CCcccC-------cc--c-c------cc-----cCcccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT------DDHYYQ-------PM--F-T------LI-----GGGMKK   82 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~------~~~~~~-------p~--~-~------~~-----~~~~~~   82 (706)
                      .+|++|||||+||++||.++++.  +.+|+|||+.      ......       |.  + .      ..     ..+. .
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~-~   80 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI-H   80 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhC--CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc-c
Confidence            57999999999999999999998  8999999981      211111       11  0 0      00     0000 0


Q ss_pred             Cccccc------------------ccccccC-CCcEEEEceeEEEEc--CCCEEEeC--CCeEEEecEEEEccccccccC
Q psy8791          83 LSDSRR------------------PMKSVLP-SGATWVKDKIVSFDP--ENNRVRTQ--AGSEISYEYMIVASGIQMYYD  139 (706)
Q Consensus        83 ~~~~~~------------------~~~~~~~-~~v~~i~~~v~~id~--~~~~v~~~--~g~~~~yd~lviAtG~~~~~~  139 (706)
                      ......                  .+..+++ .+++++.+++..++.  +..+|.+.  ++.+++||+||+|||+.+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~  160 (475)
T PRK06327         81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHL  160 (475)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCC
Confidence            000000                  1112222 589999999888773  24566664  345799999999999988643


Q ss_pred             CCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEe
Q psy8791         140 RVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYT  219 (706)
Q Consensus       140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~  219 (706)
                        |+.+                     +..+                    .+   ++.+.+..    +...        
T Consensus       161 --p~~~---------------------~~~~--------------------~~---~~~~~~~~----~~~~--------  182 (475)
T PRK06327        161 --PGVP---------------------FDNK--------------------II---LDNTGALN----FTEV--------  182 (475)
T ss_pred             --CCCC---------------------CCCc--------------------eE---ECcHHHhc----cccc--------
Confidence              3310                     0000                    01   11111110    0011        


Q ss_pred             cCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC
Q psy8791         220 FPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK  297 (706)
Q Consensus       220 ~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~  297 (706)
                       +...+.++|+..  +......+++.|.    +|+++++.+.+++  ++++.+.+.+.|+++||+++++++|.+++.+++
T Consensus       183 -~~~vvVvGgG~~--g~E~A~~l~~~g~----~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~  255 (475)
T PRK06327        183 -PKKLAVIGAGVI--GLELGSVWRRLGA----EVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK  255 (475)
T ss_pred             -CCeEEEECCCHH--HHHHHHHHHHcCC----eEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC
Confidence             111222344432  2222345666664    4999999988876  678889999999999999999999999987655


Q ss_pred             EEEEEeCC-Cc--eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHH
Q psy8791         298 EAVFKSED-KT--ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAA  370 (706)
Q Consensus       298 ~v~~~~~~-~g--~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~  370 (706)
                      .+.+...+ +|  +++++|.+++++|.+|+..   ++..++ .+++|++.||+ +++ |+.|+|||+|||+..  ++++.
T Consensus       256 ~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~-Ts~~~VyA~GD~~~~--~~~~~  331 (475)
T PRK06327        256 GVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDD-HCR-TNVPNVYAIGDVVRG--PMLAH  331 (475)
T ss_pred             EEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECC-CCc-cCCCCEEEEEeccCC--cchHH
Confidence            44433221 23  5799999999999999953   345677 67889999999 677 899999999999975  45888


Q ss_pred             HHHHhHHHHHHHHH
Q psy8791         371 AVAGQCKVVYDNLS  384 (706)
Q Consensus       371 ~a~~qg~~~a~ni~  384 (706)
                      .|..||..+|+||.
T Consensus       332 ~A~~~G~~aa~~i~  345 (475)
T PRK06327        332 KAEEEGVAVAERIA  345 (475)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999994

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.93  E-value=6.7e-24  Score=243.03  Aligned_cols=311  Identities=16%  Similarity=0.135  Sum_probs=188.0

Q ss_pred             Cccccccccccccccccc---cC-CCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccC
Q psy8791           3 SLKLCPLKSYNLLSSSFS---TS-PLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG   78 (706)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~   78 (706)
                      .+.|..++.+......-.   .. .+......++|+|||||+|||+||.+|+++  |++|+|||+.+....... ..++.
T Consensus       508 pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~--G~~VtV~Ek~~~~GG~lr-~~IP~  584 (1019)
T PRK09853        508 AVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARA--GHPVTVFEREENAGGVVK-NIIPQ  584 (1019)
T ss_pred             CeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHc--CCeEEEEecccccCccee-eeccc
Confidence            466777776654332111   11 111124567999999999999999999999  899999999886432211 11221


Q ss_pred             ccccCcccccccccccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCccccccccccccc
Q psy8791          79 GMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLV  157 (706)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~  157 (706)
                      .....+.+....+.+...++++..+....+       .+++.....||+||||||+.. ..+++||.+  +         
T Consensus       585 ~Rlp~evL~~die~l~~~GVe~~~gt~Vdi-------~le~L~~~gYDaVILATGA~~~~~l~IpG~~--~---------  646 (1019)
T PRK09853        585 FRIPAELIQHDIEFVKAHGVKFEFGCSPDL-------TVEQLKNEGYDYVVVAIGADKNGGLKLEGGN--Q---------  646 (1019)
T ss_pred             ccccHHHHHHHHHHHHHcCCEEEeCceeEE-------EhhhheeccCCEEEECcCCCCCCCCCCCCcc--C---------
Confidence            111222233334445557888887654333       233334567999999999974 445567611  0         


Q ss_pred             ccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHH
Q psy8791         158 RSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLI  237 (706)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~  237 (706)
                                                       .+..  ..+......+.......++.       .++++|+. -...+
T Consensus       647 ---------------------------------gV~s--aldfL~~~k~~~~~~~~GKr-------VVVIGGGn-VAmD~  683 (1019)
T PRK09853        647 ---------------------------------NVIK--ALPFLEEYKNKGTALKLGKH-------VVVVGGGN-TAMDA  683 (1019)
T ss_pred             ---------------------------------Ccee--hHHHHHHHhhhcccccCCCE-------EEEECCCh-HHHHH
Confidence                                             0000  00000000000001111222       22334432 22333


Q ss_pred             HHHHHHHcCCCCCcEEEEEeCCCc-CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEE---------------
Q psy8791         238 GDEYLRKHKKRDAAKLTYCTGMGV-LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVF---------------  301 (706)
Q Consensus       238 ~~~~l~~~g~~~~~~v~l~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~---------------  301 (706)
                      +. .+.+.+.  ..+|+++.+... .++  ...+.+.+.+ +.||+++.+..+.++..++. +..               
T Consensus       684 Ar-~a~RlgG--akeVTLVyRr~~~~MP--A~~eEle~Al-eeGVe~~~~~~p~~I~~dG~-l~~~~~~lg~~d~~Gr~~  756 (1019)
T PRK09853        684 AR-AALRVPG--VEKVTVVYRRTKQEMP--AWREEYEEAL-EDGVEFKELLNPESFDADGT-LTCRVMKLGEPDESGRRR  756 (1019)
T ss_pred             HH-HHHhcCC--CceEEEEEccCccccc--ccHHHHHHHH-HcCCEEEeCCceEEEEcCCc-EEEEEEEeecccCCCceE
Confidence            33 2333321  125888887653 333  3344455544 47999999988888864332 211               


Q ss_pred             -EeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHH
Q psy8791         302 -KSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKV  378 (706)
Q Consensus       302 -~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~  378 (706)
                       +.++++.++++|+||+|+|..|+ .++...|+ .+++|++.||+ +++ |+.|+|||+|||+..  |.+...|+.||+.
T Consensus       757 ~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDe-tlq-Ts~pgVFAaGD~a~G--p~tvv~Ai~qGr~  832 (1019)
T PRK09853        757 PVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDA-NGE-TSLTNVYMIGDVQRG--PSTIVAAIADARR  832 (1019)
T ss_pred             EeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCC-Ccc-cCCCCEEEEeccccC--chHHHHHHHHHHH
Confidence             12335578999999999999999 55666787 67889999998 788 799999999999876  4588899999999


Q ss_pred             HHHHHHHHHc
Q psy8791         379 VYDNLSAVMK  388 (706)
Q Consensus       379 ~a~ni~~~l~  388 (706)
                      +|+||...+.
T Consensus       833 AA~nI~~~~~  842 (1019)
T PRK09853        833 AADAILSREG  842 (1019)
T ss_pred             HHHHHhhhcC
Confidence            9999986544

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.6e-24  Score=216.50  Aligned_cols=288  Identities=21%  Similarity=0.245  Sum_probs=194.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCe-EEEEcCCCCc---ccCc---ccccccCccccCcccccccccccCCCcEEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQ-VSIVEPTDDH---YYQP---MFTLIGGGMKKLSDSRRPMKSVLPSGATWV  101 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~-Vtlie~~~~~---~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  101 (706)
                      ..+||+|||||||||+||.+++|.  +.+ ++|+|+....   ...+   .+|.+.++...++......++....+++++
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~--~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~   79 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARA--GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIV   79 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHc--CCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence            457999999999999999999999  778 6666665332   1111   122222222222222222233334788999


Q ss_pred             EceeEEEEcCC--CEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCcc
Q psy8791         102 KDKIVSFDPEN--NRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPS  179 (706)
Q Consensus       102 ~~~v~~id~~~--~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (706)
                      ..+|..++...  ..|.++++. ++.++||||||...+.+.+||                                    
T Consensus        80 ~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~------------------------------------  122 (305)
T COG0492          80 EDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPG------------------------------------  122 (305)
T ss_pred             EEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCc------------------------------------
Confidence            99999999875  367777775 999999999999999988887                                    


Q ss_pred             chhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC
Q psy8791         180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM  259 (706)
Q Consensus       180 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~  259 (706)
                       ..+.+. .  .+..+-..+. .        +.+.++        ++++|+..  +...+-+|.+.+.    +|+++++.
T Consensus       123 -e~e~~g-~--gv~yc~~cdg-~--------~~~k~v--------~ViGgG~s--Ave~Al~L~~~a~----~Vtlv~r~  175 (305)
T COG0492         123 -EEEFEG-K--GVSYCATCDG-F--------FKGKDV--------VVIGGGDS--AVEEALYLSKIAK----KVTLVHRR  175 (305)
T ss_pred             -chhhcC-C--ceEEeeecCc-c--------ccCCeE--------EEEcCCHH--HHHHHHHHHHhcC----eEEEEecC
Confidence             111111 1  2222222211 0        112222        23444422  1222234555543    39999999


Q ss_pred             CcCCCchhHHHHHHHHHHhC-CceEEcCCceEEEeCCC-CEEEEEeC-CCceEEeecEEEECCCCCch-hhhhcCCCCCC
Q psy8791         260 GVLFPSPFYAEKIHDILIGR-GVDVHKGKALVEIDLAN-KEAVFKSE-DKTERLPYAIMHVTPPMGPV-PELATSRLVDQ  335 (706)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~-~~v~~~~~-~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~  335 (706)
                      +.+-.    .+.+.+.++++ +|++++++.++++..++ ..+++... +..+++++|-++.++|..|+ .++...+.+++
T Consensus       176 ~~~ra----~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~  251 (305)
T COG0492         176 DEFRA----EEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDE  251 (305)
T ss_pred             cccCc----CHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCC
Confidence            88754    44556666665 89999999999999875 34666543 23457899999999999999 45555566899


Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      +|+|.||+ .++ |+.|+|||+|||+..+.. +...|..+|..+|.++.+.+..
T Consensus       252 ~g~I~v~~-~~~-TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~  302 (305)
T COG0492         252 NGYIVVDE-EME-TSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLES  302 (305)
T ss_pred             CCcEEcCC-Ccc-cCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhh
Confidence            99999999 566 999999999999998643 5667888999999998887753

>TIGR03452 mycothione_red mycothione reductase

Probab=99.93  E-value=1.4e-23  Score=230.09  Aligned_cols=278  Identities=16%  Similarity=0.214  Sum_probs=184.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC------cccc---------------c--ccCcc--ccCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ------PMFT---------------L--IGGGM--KKLS   84 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~------p~~~---------------~--~~~~~--~~~~   84 (706)
                      ++|++|||||+||..||..  ..  |.+|+|||++..-.-+      |.-.               .  +..+.  .+..
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~--g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~   77 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP   77 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HC--CCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence            4799999999999998644  34  8899999986531110      1100               0  00000  0000


Q ss_pred             c------------cccc-ccccc---CCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccc
Q psy8791          85 D------------SRRP-MKSVL---PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALI  148 (706)
Q Consensus        85 ~------------~~~~-~~~~~---~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~  148 (706)
                      .            +... .....   ..+++++.++..-.  +.++|.+.+|+++.||+||||||+.+..|+.++.+   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~---  152 (452)
T TIGR03452        78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADS---  152 (452)
T ss_pred             HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCC---
Confidence            0            0000 11111   15899998876555  46778888888899999999999998766533300   


Q ss_pred             cccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeC
Q psy8791         149 NALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCG  228 (706)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~  228 (706)
                                                                .+ ..++.+.+..+    ....         ...+.++
T Consensus       153 ------------------------------------------~~-~~~~~~~~~~l----~~~~---------k~vvVIG  176 (452)
T TIGR03452       153 ------------------------------------------GV-RYHTNEDIMRL----PELP---------ESLVIVG  176 (452)
T ss_pred             ------------------------------------------CC-EEEcHHHHHhh----hhcC---------CcEEEEC
Confidence                                                      00 01122222221    1111         1222334


Q ss_pred             ChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCC
Q psy8791         229 GAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK  306 (706)
Q Consensus       229 g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~  306 (706)
                      |++.  +......+.+.|.    +|+++++.+.+++  ++++.+.+.+.+ +.||++++++.|.+++.+++.+.+. ..+
T Consensus       177 gG~i--g~E~A~~l~~~G~----~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~-~~~  248 (452)
T TIGR03452       177 GGYI--AAEFAHVFSALGT----RVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLT-LDD  248 (452)
T ss_pred             CCHH--HHHHHHHHHhCCC----cEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEE-EcC
Confidence            4422  2333345666664    4999999988765  677777777655 4689999999999998655545443 346


Q ss_pred             ceEEeecEEEECCCCCchhhh---hcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         307 TERLPYAIMHVTPPMGPVPEL---ATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       307 g~~i~~D~vI~a~G~~~~~~~---~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                      |+++++|.+++++|.+|+..+   .+.|+ .+++|++.||+ ++| |+.|+|||+|||+..  +++++.|.+||+++|+|
T Consensus       249 g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~-~~~-Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~n  324 (452)
T TIGR03452       249 GSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE-YGR-TSARGVWALGDVSSP--YQLKHVANAEARVVKHN  324 (452)
T ss_pred             CCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCC-Ccc-cCCCCEEEeecccCc--ccChhHHHHHHHHHHHH
Confidence            778999999999999999653   34577 67889999999 688 999999999999985  35788899999999999


Q ss_pred             HH
Q psy8791         383 LS  384 (706)
Q Consensus       383 i~  384 (706)
                      |.
T Consensus       325 i~  326 (452)
T TIGR03452       325 LL  326 (452)
T ss_pred             hc
Confidence            95

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.93  E-value=5.1e-24  Score=234.38  Aligned_cols=287  Identities=20%  Similarity=0.223  Sum_probs=181.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccc-ccccccccCCCcEEEEceeE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDS-RRPMKSVLPSGATWVKDKIV  106 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~v~  106 (706)
                      ...++|+|||||+|||++|..|+++  +++|+|||+++.......+ .++. ......+ ......+...++++..+...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~--g~~V~lie~~~~~gG~l~~-gip~-~~~~~~~~~~~~~~l~~~gv~~~~~~~v  213 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARK--GYDVTIFEARDKAGGLLRY-GIPE-FRLPKDIVDREVERLLKLGVEIRTNTEV  213 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCcEeec-cCCC-ccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            4567999999999999999999998  8999999999863211000 0111 1111122 12223334468888776553


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                      .     +.+.+++. .+.||+||+|||+. +..+.+||.+    ..                                  
T Consensus       214 ~-----~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~----~~----------------------------------  249 (457)
T PRK11749        214 G-----RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGEN----LG----------------------------------  249 (457)
T ss_pred             C-----CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCcc----CC----------------------------------
Confidence            1     22333333 37899999999985 6667788821    00                                  


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHH------hccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQ------HFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM  259 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~------~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~  259 (706)
                           .+.   +..   .......      ....+       ...++++|+..  +......+.+.|..   +|+++++.
T Consensus       250 -----gv~---~~~---~~l~~~~~~~~~~~~~~g-------~~VvViGgG~~--g~e~A~~l~~~G~~---~Vtlv~~~  306 (457)
T PRK11749        250 -----GVY---SAV---DFLTRVNQAVADYDLPVG-------KRVVVIGGGNT--AMDAARTAKRLGAE---SVTIVYRR  306 (457)
T ss_pred             -----CcE---EHH---HHHHHHhhccccccCCCC-------CeEEEECCCHH--HHHHHHHHHHcCCC---eEEEeeec
Confidence                 000   000   0111111      11111       22233444422  22233345555532   48888875


Q ss_pred             Cc-CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE---EEEEe----------------CCCceEEeecEEEECC
Q psy8791         260 GV-LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE---AVFKS----------------EDKTERLPYAIMHVTP  319 (706)
Q Consensus       260 ~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~---v~~~~----------------~~~g~~i~~D~vI~a~  319 (706)
                      .. .++.   .....+.+++.||++++++.+.++..+++.   +.+..                .++++++++|+||+++
T Consensus       307 ~~~~~~~---~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~  383 (457)
T PRK11749        307 GREEMPA---SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAI  383 (457)
T ss_pred             CcccCCC---CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECc
Confidence            43 3331   122356778899999999999999765532   44322                1244679999999999


Q ss_pred             CCCchhhhh--cCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         320 PMGPVPELA--TSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       320 G~~~~~~~~--~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      |++|+..+.  ..++ .+++|++.||+. .+.|+.|+|||+|||+..  ++++..|+.||+.+|.+|.+.+.|+.
T Consensus       384 G~~p~~~l~~~~~gl~~~~~g~i~vd~~-~~~Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~g~~  455 (457)
T PRK11749        384 GQTPNPLILSTTPGLELNRWGTIIADDE-TGRTSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLEGAA  455 (457)
T ss_pred             cCCCCchhhccccCccCCCCCCEEeCCC-CCccCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999996543  2456 678899999983 344899999999999964  45888999999999999999998864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.92  E-value=2.9e-24  Score=239.14  Aligned_cols=287  Identities=17%  Similarity=0.151  Sum_probs=186.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc----ccccccCcc-ccCcccccccccc-cCCCcEEE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP----MFTLIGGGM-KKLSDSRRPMKSV-LPSGATWV  101 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p----~~~~~~~~~-~~~~~~~~~~~~~-~~~~v~~i  101 (706)
                      ...+||+|||||+||++||.+|++.  |++|+||++.-  ..++    .++.+.+.. .....+...+.+. ...++++.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~--G~~v~li~~~~--GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~  285 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARK--GLRTAMVAERI--GGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM  285 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC--CCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence            4568999999999999999999998  99999997531  1111    111111100 1111122222222 23678887


Q ss_pred             E-ceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCc
Q psy8791         102 K-DKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRP  178 (706)
Q Consensus       102 ~-~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (706)
                      . .+|++++.+.+  .+.+++|..+.||++|+|||+.+..+++||.+  ++                  ..+        
T Consensus       286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~--~~------------------~~~--------  337 (515)
T TIGR03140       286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEK--EY------------------IGK--------  337 (515)
T ss_pred             cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHH--Hc------------------CCC--------
Confidence            6 68898987654  56667787899999999999998888888821  00                  000        


Q ss_pred             cchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeC
Q psy8791         179 SGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTG  258 (706)
Q Consensus       179 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~  258 (706)
                                  .+......+.      .  ...+.++        +.++|+..  +...+..+...+.    +|++++.
T Consensus       338 ------------~v~~~~~~~~------~--~~~~k~V--------vViGgG~~--g~E~A~~L~~~g~----~Vtli~~  383 (515)
T TIGR03140       338 ------------GVAYCPHCDG------P--FFKGKDV--------AVIGGGNS--GIEAAIDLAGIVR----HVTVLEF  383 (515)
T ss_pred             ------------eEEEeeccCh------h--hcCCCEE--------EEECCcHH--HHHHHHHHHhcCc----EEEEEEe
Confidence                        0110000000      0  0111122        22344432  2222234454443    5999988


Q ss_pred             CCcCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEE---EEEeCC--CceEEeecEEEECCCCCchh-hhhcCC
Q psy8791         259 MGVLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLANKEA---VFKSED--KTERLPYAIMHVTPPMGPVP-ELATSR  331 (706)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v---~~~~~~--~g~~i~~D~vI~a~G~~~~~-~~~~~~  331 (706)
                      .+.+..    ...+.+.|++ .||++++++.+.++..+++.+   .+...+  +++++++|.|++++|.+|++ ++... 
T Consensus       384 ~~~l~~----~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-  458 (515)
T TIGR03140       384 ADELKA----DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-  458 (515)
T ss_pred             CCcCCh----hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-
Confidence            776642    3456677776 699999999999998764443   333221  23579999999999999995 44444 


Q ss_pred             C-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHc
Q psy8791         332 L-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       332 l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~  388 (706)
                      + .+++|+|.||+ ++| |+.|||||+|||+..+. ++...|+.+|..+|.+|..++.
T Consensus       459 ~~~~~~G~I~vd~-~~~-Ts~p~IyAaGDv~~~~~-~~~~~A~~~G~~Aa~~i~~~~~  513 (515)
T TIGR03140       459 VELNRRGEIVIDE-RGR-TSVPGIFAAGDVTTVPY-KQIIIAMGEGAKAALSAFDYLI  513 (515)
T ss_pred             cccCCCCeEEECC-CCC-CCCCCEEEcccccCCcc-ceEEEEEccHHHHHHHHHHHHh
Confidence            5 56789999999 788 89999999999998753 3445789999999999987763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.92  E-value=1.5e-23  Score=231.96  Aligned_cols=279  Identities=14%  Similarity=0.146  Sum_probs=183.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC----C----cccC-------ccccc--c------------cCcc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD----D----HYYQ-------PMFTL--I------------GGGM   80 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~----~----~~~~-------p~~~~--~------------~~~~   80 (706)
                      .+||+|||||+||++||.+|+++  |.+|+|||+++    .    +..+       |.-..  .            ..+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~--G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~   82 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH--GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW   82 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence            57999999999999999999999  89999999732    1    1111       11000  0            0000


Q ss_pred             -----ccCccccc-----------cccccc-CCCcEEEEceeEEEEcCCCEEEeCC---CeEEEecEEEEccccccccCC
Q psy8791          81 -----KKLSDSRR-----------PMKSVL-PSGATWVKDKIVSFDPENNRVRTQA---GSEISYEYMIVASGIQMYYDR  140 (706)
Q Consensus        81 -----~~~~~~~~-----------~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~---g~~~~yd~lviAtG~~~~~~~  140 (706)
                           .+...+..           .+.... ..+++++++++...+  .++|.+.+   +..+.||+||||||+.+..|.
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~  160 (499)
T PTZ00052         83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNSQEETITAKYILIATGGRPSIPE  160 (499)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCCCceEEECCEEEEecCCCCCCCC
Confidence                 00011100           011111 157888888877654  45566532   357999999999999998774


Q ss_pred             -CCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEe
Q psy8791         141 -VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYT  219 (706)
Q Consensus       141 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~  219 (706)
                       +||.+  ++                                             ..+.+.+..    +....       
T Consensus       161 ~i~G~~--~~---------------------------------------------~~~~~~~~~----~~~~~-------  182 (499)
T PTZ00052        161 DVPGAK--EY---------------------------------------------SITSDDIFS----LSKDP-------  182 (499)
T ss_pred             CCCCcc--ce---------------------------------------------eecHHHHhh----hhcCC-------
Confidence             88821  00                                             001111111    11111       


Q ss_pred             cCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC
Q psy8791         220 FPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK  297 (706)
Q Consensus       220 ~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~  297 (706)
                        ...+.++|+.  ++......+.+.|.    +|+++++. .+++  ++++.+.+++.|+++||++++++.+.+++..++
T Consensus       183 --~~vvIIGgG~--iG~E~A~~l~~~G~----~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~  253 (499)
T PTZ00052        183 --GKTLIVGASY--IGLETAGFLNELGF----DVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDD  253 (499)
T ss_pred             --CeEEEECCCH--HHHHHHHHHHHcCC----cEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCC
Confidence              1112234442  22333445666764    38888864 4554  678889999999999999999999988876443


Q ss_pred             EEEEEeCCCceEEeecEEEECCCCCchhhh---hcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHH
Q psy8791         298 EAVFKSEDKTERLPYAIMHVTPPMGPVPEL---ATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA  373 (706)
Q Consensus       298 ~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~---~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~  373 (706)
                      .+.+. ..+|+++++|.|++++|.+||..+   ...++ .+++|++.+++ . + |+.|+|||+|||+.. .+.++..|.
T Consensus       254 ~~~v~-~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~-~-~-Ts~p~IyAiGDv~~~-~~~l~~~A~  328 (499)
T PTZ00052        254 KIKVL-FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPN-D-C-TNIPNIFAVGDVVEG-RPELTPVAI  328 (499)
T ss_pred             eEEEE-ECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCC-C-c-CCCCCEEEEEEecCC-CcccHHHHH
Confidence            33332 336788999999999999999543   45667 67789888887 4 5 899999999999963 245888999


Q ss_pred             HhHHHHHHHHH
Q psy8791         374 GQCKVVYDNLS  384 (706)
Q Consensus       374 ~qg~~~a~ni~  384 (706)
                      +||+.+|+||.
T Consensus       329 ~~g~~aa~ni~  339 (499)
T PTZ00052        329 KAGILLARRLF  339 (499)
T ss_pred             HHHHHHHHHHh
Confidence            99999999995

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.92  E-value=1.2e-23  Score=223.76  Aligned_cols=302  Identities=15%  Similarity=0.120  Sum_probs=180.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  108 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~i  108 (706)
                      ..++|+|||||++|+++|..|++.  +++|++||+.+........ .........+.+.....++.+.++++..++...+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~   93 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACL--GYEVHVYDKLPEPGGLMLF-GIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC   93 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCceeee-cCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence            457999999999999999999998  8999999998864321110 0111111122222334455556888877644432


Q ss_pred             EcC-----C-----CEEEeCCCeEEEecEEEEcccc-ccccCCCCCCcccccccccccccccccccCccCCccccccccC
Q psy8791         109 DPE-----N-----NRVRTQAGSEISYEYMIVASGI-QMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRR  177 (706)
Q Consensus       109 d~~-----~-----~~v~~~~g~~~~yd~lviAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (706)
                      +..     .     +.+..+ +..+.||+||+|||+ .+..|++||.+    .             +..+...     . 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ipg~~----~-------------~~v~~~~-----~-  149 (352)
T PRK12770         94 GEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIPGED----L-------------PGVYSAL-----E-  149 (352)
T ss_pred             ccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCCCcc----c-------------cCceeHH-----H-
Confidence            211     1     111111 124789999999999 46778888831    0             0000000     0 


Q ss_pred             ccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEe
Q psy8791         178 PSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCT  257 (706)
Q Consensus       178 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~  257 (706)
                         +...+...    +  .....    .+.+....+.++        +.++++ ..... .+..+.+.|.+   +|++++
T Consensus       150 ---~~~~~~~~----~--~~~~~----~~~~~~~~g~~v--------vViG~G-~~g~e-~A~~l~~~g~~---~Vtvi~  203 (352)
T PRK12770        150 ---YLFRIRAA----K--LGYLP----WEKVPPVEGKKV--------VVVGAG-LTAVD-AALEAVLLGAE---KVYLAY  203 (352)
T ss_pred             ---HHHHhhhc----c--ccccc----cccccccCCCEE--------EEECCC-HHHHH-HHHHHHHcCCC---eEEEEe
Confidence               00000000    0  00000    000000111122        222333 22222 33344555533   488887


Q ss_pred             CCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEe-----------------CCCceEEeecEEEEC
Q psy8791         258 GMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKS-----------------EDKTERLPYAIMHVT  318 (706)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~-----------------~~~g~~i~~D~vI~a  318 (706)
                      +.+.... + ......+.|+++||++++++.+.+++.+++.  +.+..                 ..+++++++|.+|++
T Consensus       204 ~~~~~~~-~-~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a  281 (352)
T PRK12770        204 RRTINEA-P-AGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFA  281 (352)
T ss_pred             ecchhhC-C-CCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEEC
Confidence            6543221 1 2244556799999999999999999865432  22211                 124468999999999


Q ss_pred             CCCCchhhhhc--CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         319 PPMGPVPELAT--SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       319 ~G~~~~~~~~~--~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      +|.+|++.+..  .++ .+++|++.||+ +++ ++.|+|||+|||+..+  .....|+.||+.+|.+|.+.|..
T Consensus       282 ~G~~p~~~l~~~~~g~~~~~~g~i~vd~-~~~-t~~~~vyaiGD~~~~~--~~~~~A~~~g~~aa~~i~~~l~~  351 (352)
T PRK12770        282 IGEIPTPPFAKECLGIELNRKGEIVVDE-KHM-TSREGVFAAGDVVTGP--SKIGKAIKSGLRAAQSIHEWLDL  351 (352)
T ss_pred             cccCCCchhhhcccCceecCCCcEeeCC-Ccc-cCCCCEEEEcccccCc--chHHHHHHHHHHHHHHHHHHHhc
Confidence            99999965544  566 67789999999 677 7899999999999863  47789999999999999998865

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.92  E-value=1.1e-23  Score=242.61  Aligned_cols=310  Identities=18%  Similarity=0.165  Sum_probs=184.1

Q ss_pred             Cccccccccccccccccc---cCC-CCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccC
Q psy8791           3 SLKLCPLKSYNLLSSSFS---TSP-LSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG   78 (706)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~   78 (706)
                      .+.|..++.++....+-.   ... +......++|+|||||+|||+||++|+++  |++|||||+++....... ..++.
T Consensus       506 pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek~~~lGG~l~-~~IP~  582 (1012)
T TIGR03315       506 SVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEKPGGVVK-NIIPE  582 (1012)
T ss_pred             CCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEecccccCceee-ecccc
Confidence            467777777765432111   111 11223457999999999999999999998  899999999886432211 11222


Q ss_pred             ccccCcccccccccccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCccccccccccccc
Q psy8791          79 GMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLV  157 (706)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~  157 (706)
                      .....+.+......+...+++++.+....       +.+.+.....||+||+|||+.. ..+.++|.+  +         
T Consensus       583 ~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-------~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~--~---------  644 (1012)
T TIGR03315       583 FRISAESIQKDIELVKFHGVEFKYGCSPD-------LTVAELKNQGYKYVILAIGAWKHGPLRLEGGG--E---------  644 (1012)
T ss_pred             cCCCHHHHHHHHHHHHhcCcEEEEecccc-------eEhhhhhcccccEEEECCCCCCCCCCCcCCCC--c---------
Confidence            11222223333444555788887653111       2233334567999999999874 344566610  0         


Q ss_pred             ccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHH
Q psy8791         158 RSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLI  237 (706)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~  237 (706)
                                                       .+.   +  . ..   .+..+..+...+..+...++++|+. -....
T Consensus       645 ---------------------------------~v~---~--a-ve---fL~~~~~~~~~~~~GK~VVVIGGGn-vAmD~  681 (1012)
T TIGR03315       645 ---------------------------------RVL---K--S-LE---FLRAFKEGPTINPLGKHVVVVGGGN-TAMDA  681 (1012)
T ss_pred             ---------------------------------cee---e--H-HH---HHHHhhccccccccCCeEEEECCCH-HHHHH
Confidence                                             000   0  0 00   1111111100011122223344442 22233


Q ss_pred             HHHHHHHcCCCCCcEEEEEeCCCc-CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE--------------
Q psy8791         238 GDEYLRKHKKRDAAKLTYCTGMGV-LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK--------------  302 (706)
Q Consensus       238 ~~~~l~~~g~~~~~~v~l~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~--------------  302 (706)
                      +....+..|.   .+|+++.+... .++  ...+.+++.+ +.||+++.+..+.+++.  +.+++.              
T Consensus       682 Ar~a~Rl~Ga---~kVtLVyRr~~~~Mp--a~~eEl~~al-eeGVe~~~~~~p~~I~~--g~l~v~~~~l~~~d~sGr~~  753 (1012)
T TIGR03315       682 ARAALRVPGV---EKVTVVYRRTKRYMP--ASREELEEAL-EDGVDFKELLSPESFED--GTLTCEVMKLGEPDASGRRR  753 (1012)
T ss_pred             HHHHHHhCCC---ceEEEEEccCccccc--cCHHHHHHHH-HcCCEEEeCCceEEEEC--CeEEEEEEEeecccCCCcee
Confidence            3322222242   25888887653 332  2334444444 57999999988888873  222221              


Q ss_pred             --eCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHH
Q psy8791         303 --SEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKV  378 (706)
Q Consensus       303 --~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~  378 (706)
                        ..+++.++++|+||+|+|..|+ .++...++ .+++|++.||+++++ |+.|+|||+|||+..  |.+...|+.||+.
T Consensus       754 ~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~-Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~  830 (1012)
T TIGR03315       754 PVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGE-TNITNVFVIGDANRG--PATIVEAIADGRK  830 (1012)
T ss_pred             eecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCc-cCCCCEEEEeCcCCC--ccHHHHHHHHHHH
Confidence              1123347999999999999998 55666777 688899999984355 899999999999876  4588899999999


Q ss_pred             HHHHHHHHH
Q psy8791         379 VYDNLSAVM  387 (706)
Q Consensus       379 ~a~ni~~~l  387 (706)
                      +|.+|.+..
T Consensus       831 AA~nIl~~~  839 (1012)
T TIGR03315       831 AANAILSRE  839 (1012)
T ss_pred             HHHHHhccc
Confidence            999997543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.92  E-value=1.2e-23  Score=234.59  Aligned_cols=291  Identities=18%  Similarity=0.170  Sum_probs=189.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc--CcccccccCc-cccCccccccccccc-CCCcEEEE-
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY--QPMFTLIGGG-MKKLSDSRRPMKSVL-PSGATWVK-  102 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~--~p~~~~~~~~-~~~~~~~~~~~~~~~-~~~v~~i~-  102 (706)
                      ...+||+|||||+||++||.+|++.  |++|+||++......  .+.++...+. .....++...+.+.. ..++++.. 
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~--G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~  286 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARK--GIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNL  286 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcC
Confidence            4568999999999999999999998  999999987421100  0111111110 111112222233322 35788765 


Q ss_pred             ceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccc
Q psy8791         103 DKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSG  180 (706)
Q Consensus       103 ~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (706)
                      .+|++++....  .|.+.+|.++.||+||+|||+.++.+.+||.+                                   
T Consensus       287 ~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~-----------------------------------  331 (517)
T PRK15317        287 QRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGED-----------------------------------  331 (517)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHH-----------------------------------
Confidence            58999988643  56677788899999999999999888888821                                   


Q ss_pred             hhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCC
Q psy8791         181 LQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG  260 (706)
Q Consensus       181 l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~  260 (706)
                        +....   .+......+..        .+.+.++        +.++|+..  +...+..+...+.    +|+++++.+
T Consensus       332 --~~~~~---~v~~~~~~~~~--------~~~gk~V--------vVVGgG~~--g~e~A~~L~~~~~----~Vtlv~~~~  384 (517)
T PRK15317        332 --EYRNK---GVAYCPHCDGP--------LFKGKRV--------AVIGGGNS--GVEAAIDLAGIVK----HVTVLEFAP  384 (517)
T ss_pred             --HhcCc---eEEEeeccCch--------hcCCCEE--------EEECCCHH--HHHHHHHHHhcCC----EEEEEEECc
Confidence              10000   11100000000        0122222        22333322  2223334555543    589998887


Q ss_pred             cCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEE---EEEeCCCc--eEEeecEEEECCCCCchh-hhhcCCC-
Q psy8791         261 VLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLANKEA---VFKSEDKT--ERLPYAIMHVTPPMGPVP-ELATSRL-  332 (706)
Q Consensus       261 ~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v---~~~~~~~g--~~i~~D~vI~a~G~~~~~-~~~~~~l-  332 (706)
                      .+...    ..+.+.+.+ .||++++++.+.++..+++.+   .+....+|  +++++|.+++++|.+|++ ++... + 
T Consensus       385 ~l~~~----~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~  459 (517)
T PRK15317        385 ELKAD----QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VE  459 (517)
T ss_pred             ccccc----HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-ee
Confidence            66432    345566665 699999999999998775443   33222223  469999999999999984 55444 5 


Q ss_pred             CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       333 ~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      .+++|++.||+ ++| |+.|||||+|||+..+. +....|+.+|..||.++.+.+...
T Consensus       460 ~~~~g~i~vd~-~l~-Ts~p~IyAaGDv~~~~~-k~~~~A~~eG~~Aa~~~~~~l~~~  514 (517)
T PRK15317        460 LNRRGEIIVDA-RGA-TSVPGVFAAGDCTTVPY-KQIIIAMGEGAKAALSAFDYLIRN  514 (517)
T ss_pred             eCCCCcEEECc-CCC-CCCCCEEECccccCCCC-CEEEEhhhhHHHHHHHHHHHHhhc
Confidence            67789999999 788 89999999999998753 556789999999999999888654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.91  E-value=1.9e-22  Score=226.22  Aligned_cols=283  Identities=16%  Similarity=0.179  Sum_probs=182.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC-CcccC-------cccc---------cc-------cCccc----
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD-DHYYQ-------PMFT---------LI-------GGGMK----   81 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~-~~~~~-------p~~~---------~~-------~~~~~----   81 (706)
                      ++||+|||||+||..||..++++  |.+|+|||+.. .....       |.-.         ..       .-|..    
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~--G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~  193 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMER--GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF  193 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence            57999999999999999999999  99999999752 11111       1100         00       00100    


Q ss_pred             -----c-------C-cccccc------------------cccccC-C-------CcEEEEceeEEEEcCCCEEEe-CCCe
Q psy8791          82 -----K-------L-SDSRRP------------------MKSVLP-S-------GATWVKDKIVSFDPENNRVRT-QAGS  121 (706)
Q Consensus        82 -----~-------~-~~~~~~------------------~~~~~~-~-------~v~~i~~~v~~id~~~~~v~~-~~g~  121 (706)
                           +       . .....+                  +...+. .       +++++.++..-+++  ++|.+ .+|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~--~~v~v~~~g~  271 (659)
T PTZ00153        194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDK--NTIKSEKSGK  271 (659)
T ss_pred             cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecC--CeEEEccCCE
Confidence                 0       0 000011                  111111 1       36777766654443  44544 3567


Q ss_pred             EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHH
Q psy8791         122 EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYV  201 (706)
Q Consensus       122 ~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~  201 (706)
                      ++.||+||||||+.+..|++++.+                                     .    .  .+   ++.+.+
T Consensus       272 ~i~ad~lIIATGS~P~~P~~~~~~-------------------------------------~----~--~V---~ts~d~  305 (659)
T PTZ00153        272 EFKVKNIIIATGSTPNIPDNIEVD-------------------------------------Q----K--SV---FTSDTA  305 (659)
T ss_pred             EEECCEEEEcCCCCCCCCCCCCCC-------------------------------------C----C--cE---EehHHh
Confidence            899999999999998876655411                                     0    0  11   122222


Q ss_pred             HHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHH-Hh
Q psy8791         202 EKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDIL-IG  278 (706)
Q Consensus       202 ~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l-~~  278 (706)
                      ..    +....+         ..+.++|+..  +....+.+...|.    +|+++++.+++++  ++++.+.+++.+ ++
T Consensus       306 ~~----l~~lpk---------~VvIVGgG~i--GvE~A~~l~~~G~----eVTLIe~~~~ll~~~d~eis~~l~~~ll~~  366 (659)
T PTZ00153        306 VK----LEGLQN---------YMGIVGMGII--GLEFMDIYTALGS----EVVSFEYSPQLLPLLDADVAKYFERVFLKS  366 (659)
T ss_pred             hh----hhhcCC---------ceEEECCCHH--HHHHHHHHHhCCC----eEEEEeccCcccccCCHHHHHHHHHHHhhc
Confidence            21    111211         1223344422  2223355666664    5999999998886  677888888875 67


Q ss_pred             CCceEEcCCceEEEeCCCC--EEEEEeC----C--Cc--------eEEeecEEEECCCCCchhhh---hcCCCCCCCCce
Q psy8791         279 RGVDVHKGKALVEIDLANK--EAVFKSE----D--KT--------ERLPYAIMHVTPPMGPVPEL---ATSRLVDQSGYV  339 (706)
Q Consensus       279 ~gV~v~~~~~v~~i~~~~~--~v~~~~~----~--~g--------~~i~~D~vI~a~G~~~~~~~---~~~~l~~~~G~i  339 (706)
                      +||++++++.|.+|+.+++  .+.+...    +  ++        +++++|.||||+|.+||...   ...++..++|+|
T Consensus       367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I  446 (659)
T PTZ00153        367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFV  446 (659)
T ss_pred             CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEE
Confidence            9999999999999986542  2433211    1  11        37999999999999999542   455664446999


Q ss_pred             eeCccccccCC-----CCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         340 NVDKATLQHVK-----YSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       340 ~vd~~~l~~~~-----~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      .||+ +||...     .|||||+|||+..  +++++.|..||+++|+||.
T Consensus       447 ~VDe-~lqTs~~~~~~v~~IYAiGDv~g~--~~La~~A~~qg~~aa~ni~  493 (659)
T PTZ00153        447 SVDE-HLRVLREDQEVYDNIFCIGDANGK--QMLAHTASHQALKVVDWIE  493 (659)
T ss_pred             eECC-CCCcCCCCCCCCCCEEEEEecCCC--ccCHHHHHHHHHHHHHHHc
Confidence            9999 788431     6999999999865  4688999999999999995

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.91  E-value=5.1e-23  Score=226.76  Aligned_cols=328  Identities=14%  Similarity=0.087  Sum_probs=189.1

Q ss_pred             CccccccccccccccccccC--C-CCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCc
Q psy8791           3 SLKLCPLKSYNLLSSSFSTS--P-LSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGG   79 (706)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~   79 (706)
                      ++.|+.++.|......-...  . .......++|+|||||+||++||..|++.  +++|+|||+.+....... ..++..
T Consensus       113 ~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~~GG~l~-~gip~~  189 (471)
T PRK12810        113 PVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARA--GHKVTVFERADRIGGLLR-YGIPDF  189 (471)
T ss_pred             CccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCceee-ecCCcc
Confidence            46677777765533211111  1 11223457999999999999999999998  899999999875321100 011111


Q ss_pred             cccCcccccccccccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCCCcccccccccccccc
Q psy8791          80 MKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVR  158 (706)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~  158 (706)
                      ....+.+......+...++++..++....+...     . .....||+||+|||+. +..+.+||.+    ..       
T Consensus       190 ~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~-----~-~~~~~~d~vvlAtGa~~~~~l~ipG~~----~~-------  252 (471)
T PRK12810        190 KLEKEVIDRRIELMEAEGIEFRTNVEVGKDITA-----E-ELLAEYDAVFLGTGAYKPRDLGIPGRD----LD-------  252 (471)
T ss_pred             cCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCH-----H-HHHhhCCEEEEecCCCCCCcCCCCCcc----CC-------
Confidence            111111111223344578888876654433211     1 1134799999999997 6677888832    00       


Q ss_pred             cccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHH
Q psy8791         159 SFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIG  238 (706)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~  238 (706)
                                                      ++...  .+........+............+...++++|+. - +...
T Consensus       253 --------------------------------gV~~~--~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~-~-g~e~  296 (471)
T PRK12810        253 --------------------------------GVHFA--MDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGD-T-GMDC  296 (471)
T ss_pred             --------------------------------CcEEH--HHHHHHHHhhhccccccccccCCCCEEEEECCcH-H-HHHH
Confidence                                            00000  0000000000000000000000112223344442 2 2222


Q ss_pred             HHHHHHcCCCCCcEEEEEeCCCcCCCch-------hHHH-HHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe-----C-
Q psy8791         239 DEYLRKHKKRDAAKLTYCTGMGVLFPSP-------FYAE-KIHDILIGRGVDVHKGKALVEIDLANKEAVFKS-----E-  304 (706)
Q Consensus       239 ~~~l~~~g~~~~~~v~l~~~~~~~~~~~-------~~~~-~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~-----~-  304 (706)
                      +..+.+.|..   +|+..+..+......       .+.. ...+.+++.||++++++.+.+|..+++.++.+.     . 
T Consensus       297 A~~~~~~ga~---~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~  373 (471)
T PRK12810        297 VGTAIRQGAK---SVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELG  373 (471)
T ss_pred             HHHHHHcCCC---eEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEec
Confidence            2334444432   366655443221110       1111 135667789999999999999986444443211     1 


Q ss_pred             --------CCceEEeecEEEECCCCCch-h-hhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHH
Q psy8791         305 --------DKTERLPYAIMHVTPPMGPV-P-ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA  373 (706)
Q Consensus       305 --------~~g~~i~~D~vI~a~G~~~~-~-~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~  373 (706)
                              ++..++++|.||+++|..|+ . ++...++ .+++|++.+|+.+++ |+.|+|||+|||+..  +.+...|+
T Consensus       374 ~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~-Ts~~gVfa~GD~~~g--~~~~~~Av  450 (471)
T PRK12810        374 EGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQ-TSNPKVFAAGDMRRG--QSLVVWAI  450 (471)
T ss_pred             CCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCccc-CCCCCEEEccccCCC--chhHHHHH
Confidence                    12257999999999999998 3 5666677 677899999832677 899999999999985  34778899


Q ss_pred             HhHHHHHHHHHHHHcCCCC
Q psy8791         374 GQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       374 ~qg~~~a~ni~~~l~g~~~  392 (706)
                      .||+.+|.+|.+.|.|+++
T Consensus       451 ~~G~~AA~~i~~~L~g~~~  469 (471)
T PRK12810        451 AEGRQAARAIDAYLMGSTA  469 (471)
T ss_pred             HHHHHHHHHHHHHHhcCCC
Confidence            9999999999999988764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.91  E-value=6e-23  Score=238.58  Aligned_cols=296  Identities=15%  Similarity=0.165  Sum_probs=181.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccccc-ccCccccCcccccccccccCCCcEEEEceeE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL-IGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  106 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~  106 (706)
                      ...++|+|||||+|||+||.+|+++  |++|+|||+.+....  .+.+ ++......+.+....+.+...++++..+...
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~--G~~V~v~e~~~~~GG--~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v  504 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEIGG--VLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV  504 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCC--eeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence            3567999999999999999999999  999999999764221  1111 1111111111222233444578898776543


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEcccc-ccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGI-QMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                           .+.+++++.....||+||||||+ .++.+++||.+    +.|.                                
T Consensus       505 -----~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~----~~gV--------------------------------  543 (752)
T PRK12778        505 -----GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGEN----SNGV--------------------------------  543 (752)
T ss_pred             -----CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCC----CCCc--------------------------------
Confidence                 23455555445679999999998 57888899832    1110                                


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHhcc-CCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc-CC
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQHFQ-SGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV-LF  263 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~~~-~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~-~~  263 (706)
                                ++...+........... ........+...++++|+..  +...+..+.+.|..   +|+++++.+. .+
T Consensus       544 ----------~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~--a~d~A~~~~r~Ga~---~Vtlv~r~~~~~~  608 (752)
T PRK12778        544 ----------MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNT--AMDSARTAKRLGAE---RVTIVYRRSEEEM  608 (752)
T ss_pred             ----------EEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHH--HHHHHHHHHHcCCC---eEEEeeecCcccC
Confidence                      00000000000000000 00000001222333445432  22233445556632   4888887653 23


Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEEEEeC--------------------CCceEEeecEEEECCCCC
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAVFKSE--------------------DKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~~~~~--------------------~~g~~i~~D~vI~a~G~~  322 (706)
                      + ... .. .+.+++.||++++++.+.++..+ ++.++....                    ++..++++|+||+|+|+.
T Consensus       609 ~-~~~-~e-~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~  685 (752)
T PRK12778        609 P-ARL-EE-VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS  685 (752)
T ss_pred             C-CCH-HH-HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence            2 111 11 23577889999999988888643 333321110                    122369999999999999


Q ss_pred             chhhhhc-C-CC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         323 PVPELAT-S-RL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       323 ~~~~~~~-~-~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      |+..+.. . ++ .+++|+|.||+ +++ |+.|+|||+|||+..  +.++..|+.+|+.+|.+|.+.|.++
T Consensus       686 p~~~l~~~~~gl~~~~~G~i~vd~-~~~-Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~~~  752 (752)
T PRK12778        686 PNPLVPSSIPGLELNRKGTIVVDE-EMQ-SSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLSSK  752 (752)
T ss_pred             CCccccccccCceECCCCCEEeCC-CCC-CCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9965443 2 66 67789999998 565 899999999999976  4578899999999999999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.90  E-value=1.4e-22  Score=236.62  Aligned_cols=296  Identities=16%  Similarity=0.150  Sum_probs=183.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  108 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~i  108 (706)
                      ..++|+|||||+|||+||.+|+++  |++|||||+.+.....- ...++......+.+....+.+...+++|..+...+ 
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~~GG~l-~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHDLGGVL-RYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCCCCceE-EccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-
Confidence            468999999999999999999999  99999999987532210 01122111111122233444555789988765433 


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEcccc-ccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcC
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGI-QMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQ  187 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (706)
                          +.+++++.....||+|++|||+ .++.+++||.+    +.|...                         ..+.+  
T Consensus       381 ----~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~d----l~GV~~-------------------------a~dfL--  425 (944)
T PRK12779        381 ----KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEH----LLGVMS-------------------------ANEFL--  425 (944)
T ss_pred             ----cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCc----CcCcEE-------------------------HHHHH--
Confidence                3466666655679999999999 47888899821    111100                         00000  


Q ss_pred             CCCCcccCCChhHHHHHHHHHHhccCC---CEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc-CC
Q psy8791         188 PDSGVSTNYSPQYVEKTLRNLQHFQSG---PVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV-LF  263 (706)
Q Consensus       188 ~~~~v~~~~~~~~~~~~~~~l~~~~~g---~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~-~~  263 (706)
                                     ...+........   ......+...++++|+.  .+.-....+.+.|.    +|+++.+.+. .+
T Consensus       426 ---------------~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~--tA~D~A~ta~R~Ga----~Vtlv~rr~~~~m  484 (944)
T PRK12779        426 ---------------TRVNLMRGLDDDYETPLPEVKGKEVFVIGGGN--TAMDAARTAKRLGG----NVTIVYRRTKSEM  484 (944)
T ss_pred             ---------------HHHHhhccccccccccccccCCCEEEEECCCH--HHHHHHHHHHHcCC----EEEEEEecCcccc
Confidence                           000000000000   00000112223344542  23333445566664    3888876643 22


Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCCC--CEEEEEe-------------------CCCceEEeecEEEECCCCC
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLAN--KEAVFKS-------------------EDKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~~v~~~~-------------------~~~g~~i~~D~vI~a~G~~  322 (706)
                        +.....++.. .+.||+++.+..+.+|..++  +.+....                   .++..++++|+||+|+|+.
T Consensus       485 --pa~~~e~~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~  561 (944)
T PRK12779        485 --PARVEELHHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT  561 (944)
T ss_pred             --cccHHHHHHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence              2233334443 46799999999999987542  2232110                   1122469999999999999


Q ss_pred             chhhhhcC--CC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         323 PVPELATS--RL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       323 ~~~~~~~~--~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      |++.+...  ++ .+++|.|.||+.+++ |+.|+|||+|||+..  +.+...|+.+|+.||.+|.++|...
T Consensus       562 p~~~l~~~~~gle~~~~G~I~vd~~~~~-Ts~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~~~  629 (944)
T PRK12779        562 ANPIMKDAEPGLKTNKWGTIEVEKGSQR-TSIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIPFT  629 (944)
T ss_pred             CChhhhhcccCceECCCCCEEECCCCCc-cCCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99765443  56 677899999973344 899999999999976  3478899999999999999988654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.90  E-value=6.8e-23  Score=233.28  Aligned_cols=313  Identities=17%  Similarity=0.202  Sum_probs=189.7

Q ss_pred             Ccccccccccccccccc---ccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCc
Q psy8791           3 SLKLCPLKSYNLLSSSF---STSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGG   79 (706)
Q Consensus         3 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~   79 (706)
                      .+.||+++.|......-   ...+.......++|+|||||+|||+||..|++.  |++|+|||+++.....  +.+-...
T Consensus       163 ~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~~GG~--l~~gip~  238 (652)
T PRK12814        163 PVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQAGGM--MRYGIPR  238 (652)
T ss_pred             CcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCce--eeecCCC
Confidence            46788888776533211   101111233457999999999999999999998  8999999998863211  1110001


Q ss_pred             cccCcc-cccccccccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCccccccccccccc
Q psy8791          80 MKKLSD-SRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLV  157 (706)
Q Consensus        80 ~~~~~~-~~~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~  157 (706)
                      ...++. .......+...++++..+.+.+++     +.+.+. ...||+|++|||+.+ ..+++||.+    ..      
T Consensus       239 ~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~----~~------  302 (652)
T PRK12814        239 FRLPESVIDADIAPLRAMGAEFRFNTVFGRD-----ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEE----LP------  302 (652)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEeCCcccCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcC----cC------
Confidence            111111 111233344468888776654332     222222 235999999999875 456788821    00      


Q ss_pred             ccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHH---hccCCCEEEecCCCCeeeCChhHHH
Q psy8791         158 RSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQ---HFQSGPVLYTFPATPIKCGGAPMKA  234 (706)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~---~~~~g~~vv~~~~~~v~~~g~~~~~  234 (706)
                                                       .+.   +.   ....+...   ....+       ...+.++|+..  
T Consensus       303 ---------------------------------gv~---~~---~~~l~~~~~~~~~~~g-------k~VvVIGgG~~--  334 (652)
T PRK12814        303 ---------------------------------GVI---SG---IDFLRNVALGTALHPG-------KKVVVIGGGNT--  334 (652)
T ss_pred             ---------------------------------CcE---eH---HHHHHHhhcCCcccCC-------CeEEEECCCHH--
Confidence                                             000   00   00111100   01111       22233444422  


Q ss_pred             HHHHHHHHHHcCCCCCcEEEEEeCCCc-CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE-----e-----
Q psy8791         235 VLIGDEYLRKHKKRDAAKLTYCTGMGV-LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK-----S-----  303 (706)
Q Consensus       235 ~~~~~~~l~~~g~~~~~~v~l~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~-----~-----  303 (706)
                      +...+..+.+.|..   +|+++.+... .++  .....+.+. .+.||+++++..+.+|..+++.+.+.     .     
T Consensus       335 a~e~A~~l~~~Ga~---~Vtlv~r~~~~~mp--a~~~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~  408 (652)
T PRK12814        335 AIDAARTALRLGAE---SVTILYRRTREEMP--ANRAEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDE  408 (652)
T ss_pred             HHHHHHHHHHcCCC---eEEEeeecCcccCC--CCHHHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCC
Confidence            22233344555532   4888887654 343  122334444 35799999999988887544432211     0     


Q ss_pred             ---------CCCceEEeecEEEECCCCCchh-hhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHH
Q psy8791         304 ---------EDKTERLPYAIMHVTPPMGPVP-ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAV  372 (706)
Q Consensus       304 ---------~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a  372 (706)
                               .++..++++|.||+++|..|+. ++...++ .+.+|++.||+. .+.|+.|+|||+|||+..  +.++..|
T Consensus       409 ~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~-~~~Ts~pgVfA~GDv~~g--~~~v~~A  485 (652)
T PRK12814        409 SGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPE-TLQTSVAGVFAGGDCVTG--ADIAINA  485 (652)
T ss_pred             CCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCC-CCcCCCCCEEEcCCcCCC--chHHHHH
Confidence                     0112369999999999999994 5555677 677899999984 444999999999999975  4578899


Q ss_pred             HHhHHHHHHHHHHHHcCCCC
Q psy8791         373 AGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       373 ~~qg~~~a~ni~~~l~g~~~  392 (706)
                      +.||+.+|.+|.+.|.|+++
T Consensus       486 i~~G~~AA~~I~~~L~g~~~  505 (652)
T PRK12814        486 VEQGKRAAHAIDLFLNGKPV  505 (652)
T ss_pred             HHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999876

>KOG0405|consensus

Probab=99.90  E-value=4.2e-22  Score=194.65  Aligned_cols=298  Identities=14%  Similarity=0.208  Sum_probs=205.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC---------------cccCc------------ccccccCcc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD---------------HYYQP------------MFTLIGGGM   80 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~---------------~~~~p------------~~~~~~~~~   80 (706)
                      ...+|.+|||||-+|+++|++.++.  |.++.|+|..-.               .+|..            +|+.---+.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~--GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~   95 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASH--GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS   95 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhc--CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence            3468999999999999999999999  999999997621               11100            000000000


Q ss_pred             ccC-------ccccc-----ccccccCCCcEEEEceeEEEEcCCCEEEeCCCeE--EEecEEEEccccccccCCCCCCcc
Q psy8791          81 KKL-------SDSRR-----PMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSE--ISYEYMIVASGIQMYYDRVKGPSA  146 (706)
Q Consensus        81 ~~~-------~~~~~-----~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~~--~~yd~lviAtG~~~~~~~~~g~~~  146 (706)
                      .+.       +....     +.+.+.+.+++++.++..-+++.+-.|...||.+  +++.++.||||+++.+|+|||   
T Consensus        96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG---  172 (478)
T KOG0405|consen   96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPG---  172 (478)
T ss_pred             CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCc---
Confidence            000       00000     1122234688999999888888777888888853  577899999999999999999   


Q ss_pred             cccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCee
Q psy8791         147 LINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIK  226 (706)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~  226 (706)
                      +|++...+-|++                                                 |.++++..+|+++|...++
T Consensus       173 ~E~gidSDgff~-------------------------------------------------Lee~Pkr~vvvGaGYIavE  203 (478)
T KOG0405|consen  173 AELGIDSDGFFD-------------------------------------------------LEEQPKRVVVVGAGYIAVE  203 (478)
T ss_pred             hhhccccccccc-------------------------------------------------hhhcCceEEEEccceEEEE
Confidence            345543332221                                                 2234444456666555555


Q ss_pred             eCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC
Q psy8791         227 CGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE  304 (706)
Q Consensus       227 ~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~  304 (706)
                      .+|-           ++..|.    +++++-+...++.  ++.+++.+.+.|..+||++|.++.++++............
T Consensus       204 ~Agi-----------~~gLgs----ethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~  268 (478)
T KOG0405|consen  204 FAGI-----------FAGLGS----ETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVIT  268 (478)
T ss_pred             hhhH-----------HhhcCC----eeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEE
Confidence            5542           555553    3788888888876  7889999999999999999999999988764432111122


Q ss_pred             CCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHH
Q psy8791         305 DKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY  380 (706)
Q Consensus       305 ~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a  380 (706)
                      ..|+...+|.++||+|.+|+..   +++.|+ ++++|.|.||++  |.|+.|+||++||++.--.  +...|.+.|+.+|
T Consensus       269 ~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeY--q~Tnvp~I~avGDv~gk~~--LTPVAiaagr~la  344 (478)
T KOG0405|consen  269 SHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEY--QNTNVPSIWAVGDVTGKIN--LTPVAIAAGRKLA  344 (478)
T ss_pred             eccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecc--ccCCCCceEEeccccCcEe--cchHHHhhhhhHH
Confidence            2556667999999999999943   556688 899999999983  6699999999999987533  5567888999999


Q ss_pred             HHHHHHHcCCCCCCccccee
Q psy8791         381 DNLSAVMKNRALPHEYNGYT  400 (706)
Q Consensus       381 ~ni~~~l~g~~~~~~~~~~~  400 (706)
                      +.+-..  +++....|....
T Consensus       345 ~rlF~~--~~~~kldY~nVp  362 (478)
T KOG0405|consen  345 NRLFGG--GKDTKLDYENVP  362 (478)
T ss_pred             HHhhcC--CCCCccccccCc
Confidence            887432  333345666543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.89  E-value=8.1e-22  Score=232.39  Aligned_cols=323  Identities=15%  Similarity=0.121  Sum_probs=188.0

Q ss_pred             CccccccccccccccccccC-CCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccc
Q psy8791           3 SLKLCPLKSYNLLSSSFSTS-PLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK   81 (706)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~   81 (706)
                      .+.|..++.|......-... .+......++|+|||||+|||+||.+|+++  |++|+|||+.+....... ..++....
T Consensus       402 pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~--G~~VtV~E~~~~~GG~l~-~gip~~rl  478 (1006)
T PRK12775        402 SVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKY--GVDVTVYEALHVVGGVLQ-YGIPSFRL  478 (1006)
T ss_pred             CeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCcceee-ccCCccCC
Confidence            45666666664332110111 111223457999999999999999999999  999999999875321100 11121111


Q ss_pred             cCcccccccccccCCCcEEEEceeEEEEcCCCEEEeCCCe-EEEecEEEEccccc-cccCCCCCCccccccccccccccc
Q psy8791          82 KLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGS-EISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVRS  159 (706)
Q Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~-~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~~  159 (706)
                      ..+.+......+...++++..+.+.+.+     +++++.. ...||+||||||+. ++.+++||.+    ..|       
T Consensus       479 ~~e~~~~~~~~l~~~Gv~~~~~~~vg~~-----~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~----l~g-------  542 (1006)
T PRK12775        479 PRDIIDREVQRLVDIGVKIETNKVIGKT-----FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEF----AGQ-------  542 (1006)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCccCCc-----cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcC----CCC-------
Confidence            1122223344555678999877654322     2322211 24699999999984 7888899831    110       


Q ss_pred             ccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHH--Hh--ccCCCEEEecCCCCeeeCChhHHHH
Q psy8791         160 FVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNL--QH--FQSGPVLYTFPATPIKCGGAPMKAV  235 (706)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l--~~--~~~g~~vv~~~~~~v~~~g~~~~~~  235 (706)
                                                      +   ++...+....+..  ..  .....  +..+...++++|+..  +
T Consensus       543 --------------------------------V---~~a~~fL~~~~~~~~~~~~~~~~~--~~~Gk~VvVIGgG~t--A  583 (1006)
T PRK12775        543 --------------------------------V---YSANEFLTRVNLMGGDKFPFLDTP--ISLGKSVVVIGAGNT--A  583 (1006)
T ss_pred             --------------------------------c---EEHHHHHHHHHhcCccccccccCC--ccCCCEEEEECCcHH--H
Confidence                                            0   0000000000000  00  00000  001222333455432  2


Q ss_pred             HHHHHHHHHcCCCCCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEE---EEe------CC
Q psy8791         236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAV---FKS------ED  305 (706)
Q Consensus       236 ~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~---~~~------~~  305 (706)
                      .-....+.+.|..   .|+++.+....-. +..... .+.+++.||++++++.+.++..+ ++.++   +..      ..
T Consensus       584 ~D~A~~a~rlGa~---~Vtiv~rr~~~em-~a~~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~  658 (1006)
T PRK12775        584 MDCLRVAKRLGAP---TVRCVYRRSEAEA-PARIEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDE  658 (1006)
T ss_pred             HHHHHHHHHcCCC---EEEEEeecCcccC-CCCHHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCC
Confidence            2234445556642   3666654432211 111111 24577889999999999898643 33332   211      01


Q ss_pred             C--------c--eEEeecEEEECCCCCchhhhhc--CCC-CCCCCceeeCc----cccccCCCCCEEEccccCCCCCCch
Q psy8791         306 K--------T--ERLPYAIMHVTPPMGPVPELAT--SRL-VDQSGYVNVDK----ATLQHVKYSNVFAIGDCSNLPTSKT  368 (706)
Q Consensus       306 ~--------g--~~i~~D~vI~a~G~~~~~~~~~--~~l-~~~~G~i~vd~----~~l~~~~~~~Ifa~GD~~~~~~~~~  368 (706)
                      +        |  .++++|+||+++|+.|+..+..  .++ ++++|+|.+|+    .+++ |+.|+|||+|||+..  +.+
T Consensus       659 ~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~-Ts~pgVFAaGDv~~G--~~~  735 (1006)
T PRK12775        659 KGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQS-TNLPGVFAGGDIVTG--GAT  735 (1006)
T ss_pred             CCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcC-CCCCCEEEecCcCCC--ccH
Confidence            1        2  3699999999999999954433  256 67789999996    2455 899999999999976  457


Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         369 AAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       369 ~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      ...|+.+|+.+|.+|.+.|.+..
T Consensus       736 vv~Ai~~Gr~AA~~I~~~L~~~~  758 (1006)
T PRK12775        736 VILAMGAGRRAARSIATYLRLGK  758 (1006)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC
Confidence            88999999999999999998754

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=212.24  Aligned_cols=314  Identities=24%  Similarity=0.300  Sum_probs=220.3

Q ss_pred             EEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC--cccCcccccccCccccCccccccccccc-CCCcEEEE-ceeEEE
Q psy8791          33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD--HYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVK-DKIVSF  108 (706)
Q Consensus        33 VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~-~~v~~i  108 (706)
                      ++|||+|+||+++|..|++..++.+|+++...+.  +..+|....+..+....+....+.. +. ..+++... .+|+++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i   79 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI   79 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence            5899999999999999999877888887776654  4444555556555555555544443 22 34666655 689999


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCC
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQP  188 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  188 (706)
                      |+.++.+.+.+| ++.||+|++|||+.+..++  +..                 .+                        
T Consensus        80 d~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~--~~~-----------------~~------------------------  115 (415)
T COG0446          80 DPENKVVLLDDG-EIEYDYLVLATGARPRPPP--ISD-----------------WE------------------------  115 (415)
T ss_pred             cCCCCEEEECCC-cccccEEEEcCCCcccCCC--ccc-----------------cC------------------------
Confidence            999999999999 8999999999999987754  200                 00                        


Q ss_pred             CCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCCc---
Q psy8791         189 DSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPS---  265 (706)
Q Consensus       189 ~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~---  265 (706)
                        .+......+.++........            ....|..++..+++.+++.++++|.    ++++++..+++++.   
T Consensus       116 --~~~~~~~~~~~~~~~~~~~~------------~~~v~vvG~G~~gle~A~~~~~~G~----~v~l~e~~~~~~~~~~~  177 (415)
T COG0446         116 --GVVTLRLREDAEALKGGAEP------------PKDVVVVGAGPIGLEAAEAAAKRGK----KVTLIEAADRLGGQLLD  177 (415)
T ss_pred             --ceEEECCHHHHHHHHHHHhc------------cCeEEEECCcHHHHHHHHHHHHcCC----eEEEEEcccccchhhhh
Confidence              11111122222222222221            1112222334567788888999985    49999999999873   


Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEE--EeCCCceEEeecEEEECCCCCchhhhhcCC---CCCCCCcee
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVF--KSEDKTERLPYAIMHVTPPMGPVPELATSR---LVDQSGYVN  340 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~--~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~---l~~~~G~i~  340 (706)
                      +.+.+.+.+.++++||+++++..+.+|+...+....  ....++..+++|++++++|.+||..+.+..   +...+|++.
T Consensus       178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~  257 (415)
T COG0446         178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVL  257 (415)
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEE
Confidence            789999999999999999999999999987654332  234478899999999999999997766653   577788999


Q ss_pred             eCccccccCC-CCCEEEccccCCCCCC--------chHHHHHHhHHHHHHHHHHHHcC-CCC-CCcccceeeEEEEecCC
Q psy8791         341 VDKATLQHVK-YSNVFAIGDCSNLPTS--------KTAAAVAGQCKVVYDNLSAVMKN-RAL-PHEYNGYTSCPLVTGYS  409 (706)
Q Consensus       341 vd~~~l~~~~-~~~Ifa~GD~~~~~~~--------~~~~~a~~qg~~~a~ni~~~l~g-~~~-~~~~~~~~~~~~~~G~~  409 (706)
                      ||+ .++ ++ +++|||+|||+..+.+        ..++.+..+++.++.++.....- ..+ ...+..+..|....|..
T Consensus       258 v~~-~~~-~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  335 (415)
T COG0446         258 VDE-RGG-TSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLT  335 (415)
T ss_pred             Ecc-ccc-cCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccccccccccCceEEEEcCeEEEEecCC
Confidence            999 455 54 9999999999987643        24567778888888888533000 111 23355566677677766


Q ss_pred             eE
Q psy8791         410 KC  411 (706)
Q Consensus       410 ~~  411 (706)
                      ..
T Consensus       336 ~~  337 (415)
T COG0446         336 EG  337 (415)
T ss_pred             cc
Confidence            53

>KOG1335|consensus

Probab=99.88  E-value=7.3e-22  Score=195.48  Aligned_cols=284  Identities=17%  Similarity=0.213  Sum_probs=194.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cc-------------cc-cccCccccCcccc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PM-------------FT-LIGGGMKKLSDSR   87 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~-------------~~-~~~~~~~~~~~~~   87 (706)
                      ..+|++|||||++|-.||.+.++.  |.+-+.||++......       |+             .+ .+.........+.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl--GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~  115 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL--GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS  115 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh--cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence            579999999999999999999999  9999999997653222       11             00 0000000000111


Q ss_pred             c------------------ccccccC-CCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCCcc
Q psy8791          88 R------------------PMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGPSA  146 (706)
Q Consensus        88 ~------------------~~~~~~~-~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~~~  146 (706)
                      +                  .+..+++ .+++++.+.-.-++|..-++.-.||  ..+..+++++|||+.-  +++||++ 
T Consensus       116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV--~~~PGI~-  192 (506)
T KOG1335|consen  116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGIT-  192 (506)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCcc--CCCCCeE-
Confidence            1                  1223333 5677888777777776555555555  4679999999999964  3456742 


Q ss_pred             cccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCee
Q psy8791         147 LINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIK  226 (706)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~  226 (706)
                                                        +++.      .+   -+.+.+.    .|...++.-.|++.|..+++
T Consensus       193 ----------------------------------IDek------kI---VSStgAL----sL~~vPk~~~viG~G~IGLE  225 (506)
T KOG1335|consen  193 ----------------------------------IDEK------KI---VSSTGAL----SLKEVPKKLTVIGAGYIGLE  225 (506)
T ss_pred             ----------------------------------ecCc------eE---EecCCcc----chhhCcceEEEEcCceeeee
Confidence                                              1110      00   0111111    12233333334443333333


Q ss_pred             eCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-EEE--E
Q psy8791         227 CGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-EAV--F  301 (706)
Q Consensus       227 ~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~v~--~  301 (706)
                      .+           ..+.+.|.    +||+++..+.+.+  +.++++.+++.|++.|++++++++|...+.++. .+.  +
T Consensus       226 ~g-----------sV~~rLGs----eVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~v  290 (506)
T KOG1335|consen  226 MG-----------SVWSRLGS----EVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEV  290 (506)
T ss_pred             hh-----------hHHHhcCC----eEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEE
Confidence            22           34777775    3999999988877  789999999999999999999999999987655 333  3


Q ss_pred             EeCC--CceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHh
Q psy8791         302 KSED--KTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQ  375 (706)
Q Consensus       302 ~~~~--~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~q  375 (706)
                      +...  ..++++||.+++++|.+|-..   +++.|+ .|.+|++.||. .++ |.+||||++||+...  |++++.|..|
T Consensus       291 e~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~-~f~-t~vP~i~~IGDv~~g--pMLAhkAeee  366 (506)
T KOG1335|consen  291 ENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNT-RFQ-TKVPHIYAIGDVTLG--PMLAHKAEEE  366 (506)
T ss_pred             EecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccc-ccc-ccCCceEEecccCCc--chhhhhhhhh
Confidence            2222  346799999999999999743   445576 78999999999 577 899999999999987  5599999999


Q ss_pred             HHHHHHHH
Q psy8791         376 CKVVYDNL  383 (706)
Q Consensus       376 g~~~a~ni  383 (706)
                      |-.+.+.|
T Consensus       367 gI~~VE~i  374 (506)
T KOG1335|consen  367 GIAAVEGI  374 (506)
T ss_pred             chhheeee
Confidence            98888887

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.87  E-value=4.6e-21  Score=211.21  Aligned_cols=303  Identities=15%  Similarity=0.120  Sum_probs=170.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  108 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~i  108 (706)
                      ..++|+|||||++|++||..|++.  +++|+|||+.+.......+ .++......+.+......+...++++..+.....
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~--g~~V~v~e~~~~~gG~l~~-gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRA--GHTVTVFEREDRCGGLLMY-GIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCCCceeec-cCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence            347999999999999999999998  8999999998853211000 0111111111122223334447888877654432


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcC
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQ  187 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (706)
                      +...      +.....||.|++|||+. +..+++||.+    ..|             .+.            ..+.+..
T Consensus       219 ~~~~------~~~~~~~d~VilAtGa~~~~~l~i~G~~----~~g-------------V~~------------~~~~l~~  263 (485)
T TIGR01317       219 DISA------DELKEQFDAVVLAGGATKPRDLPIPGRE----LKG-------------IHY------------AMEFLPS  263 (485)
T ss_pred             ccCH------HHHHhhCCEEEEccCCCCCCcCCCCCcC----CCC-------------cEe------------HHHHHHH
Confidence            2211      11235799999999997 7778889832    000             000            0000000


Q ss_pred             CCCCcccCCChhHHHHHHHHHHh-ccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCCc-
Q psy8791         188 PDSGVSTNYSPQYVEKTLRNLQH-FQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPS-  265 (706)
Q Consensus       188 ~~~~v~~~~~~~~~~~~~~~l~~-~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~-  265 (706)
                      .. ...  .. ..    .+.+.. ...+       ...++++|+. -....+...+ +.+.   ..|++++.++..+.. 
T Consensus       264 ~~-~~~--~~-~~----~~~~~~~~~~g-------k~VvViGgG~-~g~d~a~~a~-~~ga---~~V~vv~~~~~~~~~~  323 (485)
T TIGR01317       264 AT-KAL--LG-KD----FKDIIFIKAKG-------KKVVVIGGGD-TGADCVGTSL-RHGA---ASVHQFEIMPKPPEAR  323 (485)
T ss_pred             Hh-hhh--cc-cc----ccccccccCCC-------CEEEEECCcH-HHHHHHHHHH-HcCC---CEEEEEEecCCChhhc
Confidence            00 000  00 00    000000 0111       1222334442 2222223333 3332   148888877654320 


Q ss_pred             ------hh------HHHHHHHHHHhCCceE-EcCCceEEEeCCC-CEEEEEe--------CCCc-----------eEEee
Q psy8791         266 ------PF------YAEKIHDILIGRGVDV-HKGKALVEIDLAN-KEAVFKS--------EDKT-----------ERLPY  312 (706)
Q Consensus       266 ------~~------~~~~~~~~l~~~gV~v-~~~~~v~~i~~~~-~~v~~~~--------~~~g-----------~~i~~  312 (706)
                            +.      .....++..+..||++ +++..+.+|..++ +.+..+.        .++|           .++++
T Consensus       324 ~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~  403 (485)
T TIGR01317       324 AKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEA  403 (485)
T ss_pred             ccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEEC
Confidence                  11      1122333344467654 4566777776542 3332111        1122           37999


Q ss_pred             cEEEECCCCC-ch-hhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         313 AIMHVTPPMG-PV-PELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       313 D~vI~a~G~~-~~-~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      |+||+++|+. |+ .++...++ .+++|++.+++.+++ |+.|+|||+|||+..  +.++..|..+|+.+|.+|.++|.|
T Consensus       404 D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~-Ts~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g  480 (485)
T TIGR01317       404 DLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYS-TSIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMG  480 (485)
T ss_pred             CEEEEccCcCCCccccccccCcccCCCCCEEecCCCce-ECCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999996 76 45566677 577899966543555 999999999999875  447788999999999999999988


Q ss_pred             CCC
Q psy8791         390 RAL  392 (706)
Q Consensus       390 ~~~  392 (706)
                      ++.
T Consensus       481 ~~~  483 (485)
T TIGR01317       481 SSV  483 (485)
T ss_pred             CCC
Confidence            654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.87  E-value=8.2e-21  Score=217.38  Aligned_cols=300  Identities=15%  Similarity=0.116  Sum_probs=171.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  108 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~i  108 (706)
                      ..++|+|||||+|||+||..|++.  |++|+|||+.+.......+ .++......+.+......+...++++..+.....
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~~GG~l~~-gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPEIGGLLTF-GIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCceeee-cCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC
Confidence            457999999999999999999998  8999999998753221111 1111111111111122333346788765443221


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcC
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQ  187 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (706)
                      +     +.+.+. ...||.|++|||+.. ..+.+||.+    ..|...-               ++++.  .........
T Consensus       403 ~-----i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~----~~Gv~~a---------------~~~l~--~~~~~~~~~  455 (654)
T PRK12769        403 D-----ISLESL-LEDYDAVFVGVGTYRSMKAGLPNED----APGVYDA---------------LPFLI--ANTKQVMGL  455 (654)
T ss_pred             c-----CCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCC----CCCeEEh---------------HHHHH--HHHhhhccC
Confidence            1     122111 246999999999854 346677721    1110000               00000  000000000


Q ss_pred             CCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcC-CCch
Q psy8791         188 PDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVL-FPSP  266 (706)
Q Consensus       188 ~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~-~~~~  266 (706)
                      .        ....     .......+        ...++++|+. . +......+.+.|..   +|+++.+.+.. ++  
T Consensus       456 ~--------~~~~-----~~~~~~~g--------k~VvVIGgG~-~-a~d~A~~a~r~ga~---~Vt~i~~~~~~~~~--  507 (654)
T PRK12769        456 E--------ELPE-----EPFINTAG--------LNVVVLGGGD-T-AMDCVRTALRHGAS---NVTCAYRRDEANMP--  507 (654)
T ss_pred             c--------cccc-----cccccCCC--------CeEEEECCcH-H-HHHHHHHHHHcCCC---eEEEeEecCCCCCC--
Confidence            0        0000     00000111        1222334442 2 22222233445432   37887765443 33  


Q ss_pred             hHHHHHHHHHHhCCceEEcCCceEEEeC-CCCEE---EEEeC------CCc-----------eEEeecEEEECCCCCchh
Q psy8791         267 FYAEKIHDILIGRGVDVHKGKALVEIDL-ANKEA---VFKSE------DKT-----------ERLPYAIMHVTPPMGPVP  325 (706)
Q Consensus       267 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~~v---~~~~~------~~g-----------~~i~~D~vI~a~G~~~~~  325 (706)
                      .. ....+.+++.||+++++..+.++.. +++.+   .+...      .+|           .++++|+||+|+|+.|++
T Consensus       508 ~~-~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~  586 (654)
T PRK12769        508 GS-KKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHG  586 (654)
T ss_pred             CC-HHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCc
Confidence            11 1234567889999999999999863 23333   22110      112           369999999999999983


Q ss_pred             --hhhcCCC-CCCCCceeeCcc---ccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         326 --ELATSRL-VDQSGYVNVDKA---TLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       326 --~~~~~~l-~~~~G~i~vd~~---~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                        ++...++ ++++|+|.||+.   +++ |+.|+|||+||++..  +.+...|+.+|+.+|++|.++|.++
T Consensus       587 ~~~~~~~gl~~~~~G~i~vd~~~~~~~~-Ts~~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~~  654 (654)
T PRK12769        587 MPWLESHGVTVDKWGRIIADVESQYRYQ-TSNPKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGVK  654 (654)
T ss_pred             cccccccCCcCCCCCCEEeCCCcccCcc-cCCCCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCcC
Confidence              5556677 778899999862   255 899999999999876  3477899999999999999988653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.87  E-value=1.3e-20  Score=207.01  Aligned_cols=296  Identities=14%  Similarity=0.080  Sum_probs=169.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccc-cccccccCCCcEEEEceeEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSR-RPMKSVLPSGATWVKDKIVS  107 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~v~~  107 (706)
                      ..++|+|||||++||+||..|+++  |++|+++|+.+.......+ .++.... ..++. .....+...++++..+....
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~~~gG~l~~-gip~~~~-~~~~~~~~~~~~~~~Gv~~~~~~~v~  215 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA--GVQVVVFDRHPEIGGLLTF-GIPSFKL-DKAVLSRRREIFTAMGIEFHLNCEVG  215 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCceeee-cCccccC-CHHHHHHHHHHHHHCCCEEECCCEeC
Confidence            457999999999999999999998  8999999998853211110 0111111 11111 11233344688886543221


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                           +.+.+++ ....||.||+|||+.+ ..+++||.+    ..|             .+.            ..+.+.
T Consensus       216 -----~~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~----~~g-------------V~~------------a~~~l~  260 (467)
T TIGR01318       216 -----RDISLDD-LLEDYDAVFLGVGTYRSMRGGLPGED----APG-------------VLQ------------ALPFLI  260 (467)
T ss_pred             -----CccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcC----CCC-------------cEE------------HHHHHH
Confidence                 1122222 1246999999999976 346788832    000             000            000000


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcC-CCc
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVL-FPS  265 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~-~~~  265 (706)
                      .....+......   .. . .+....+        ...+.++|+.  .+......+.+.|..   +|+++++.+.. ++ 
T Consensus       261 ~~~~~~~~~~~~---~~-~-~~~~~~g--------k~VvVIGgG~--~a~d~A~~a~~~Ga~---~Vtvv~r~~~~~~~-  321 (467)
T TIGR01318       261 ANTRQLMGLPES---PE-E-PLIDVEG--------KRVVVLGGGD--TAMDCVRTAIRLGAA---SVTCAYRRDEANMP-  321 (467)
T ss_pred             HHHHHhcCCCcc---cc-c-cccccCC--------CEEEEECCcH--HHHHHHHHHHHcCCC---eEEEEEecCcccCC-
Confidence            000000000000   00 0 0000111        1122233332  122223334445532   48889876543 33 


Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEE---EEEeC-----------------CCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEA---VFKSE-----------------DKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v---~~~~~-----------------~~g~~i~~D~vI~a~G~~~~  324 (706)
                       .... ..+.+++.||++++++.+.++..+ ++.+   .+...                 ++..++++|.||+++|++|+
T Consensus       322 -~~~~-e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  399 (467)
T TIGR01318       322 -GSRR-EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH  399 (467)
T ss_pred             -CCHH-HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence             1112 234567889999999999998643 2333   22110                 12347999999999999998


Q ss_pred             --hhhhcCCC-CCCCCceeeCc---cccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHH
Q psy8791         325 --PELATSRL-VDQSGYVNVDK---ATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVM  387 (706)
Q Consensus       325 --~~~~~~~l-~~~~G~i~vd~---~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l  387 (706)
                        .++...++ .+++|++.||+   .+++ |+.|+|||+|||+..  +.+...|+.+|+.+|.+|.+.|
T Consensus       400 ~~~~~~~~gl~~~~~g~i~vd~~~~~~~~-T~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L  465 (467)
T TIGR01318       400 AMPWLAGHGITLDSWGRIITGDVSYLPYQ-TTNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWL  465 (467)
T ss_pred             ccccccccCccCCCCCCEEeCCccccCcc-CCCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHh
Confidence              34555677 67789999993   1566 789999999999875  3477889999999999998876

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.86  E-value=2.2e-20  Score=212.65  Aligned_cols=296  Identities=15%  Similarity=0.124  Sum_probs=169.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  107 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~  107 (706)
                      ...++|+|||+|+||+++|..|+++  |++|+|||+++.......+ .++......+.+......+...+++++.+....
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~--G~~v~vie~~~~~gG~~~~-~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  357 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATM--GYEVTVYESLSKPGGVMRY-GIPSYRLPDEALDKDIAFIEALGVKIHLNTRVG  357 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCceEee-cCCcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence            3467899999999999999999998  8999999998853221110 111111111112222334445688887654432


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                      .+     +..++ ....||+||+|||+. ++.+++||.+    ..                                   
T Consensus       358 ~~-----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~----~~-----------------------------------  392 (604)
T PRK13984        358 KD-----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTD----HP-----------------------------------  392 (604)
T ss_pred             Cc-----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcC----Cc-----------------------------------
Confidence            22     11111 135799999999986 5677888831    00                                   


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCC--CCCcEEEEEeC--CCcC
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKK--RDAAKLTYCTG--MGVL  262 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~--~~~~~v~l~~~--~~~~  262 (706)
                          .+..  ..+......+.+.. . +. ....+...++++|+..  +......+.+.+.  ....+++++..  ....
T Consensus       393 ----gv~~--a~~~l~~~~~~~~~-~-~~-~~~~~k~VvVIGGG~~--g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~  461 (604)
T PRK13984        393 ----DVIQ--ALPLLREIRDYLRG-E-GP-KPKIPRSLVVIGGGNV--AMDIARSMARLQKMEYGEVNVKVTSLERTFEE  461 (604)
T ss_pred             ----CeEe--HHHHHHHHHhhhcc-C-CC-cCCCCCcEEEECCchH--HHHHHHHHHhccccccCceEEEEeccccCccc
Confidence                0000  00000111111100 0 00 0001122333444432  2222233444432  11224565532  2222


Q ss_pred             CCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe-------------------CCCceEEeecEEEECCCCCc
Q psy8791         263 FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS-------------------EDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       263 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~-------------------~~~g~~i~~D~vI~a~G~~~  323 (706)
                      ++ . ....+.+ +.+.||+++++..+.++..+++.+..+.                   .+++.++++|.||+++|+.|
T Consensus       462 ~~-~-~~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p  538 (604)
T PRK13984        462 MP-A-DMEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP  538 (604)
T ss_pred             CC-C-CHHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence            32 1 1222333 3467999999988888865444333211                   11235799999999999999


Q ss_pred             hhh-hhc---CCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         324 VPE-LAT---SRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       324 ~~~-~~~---~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      +.. +..   .++..++|+|.||+ +++ |+.|+|||+|||+..+   ....|+.+|+.+|.+|.++|.++
T Consensus       539 ~~~~l~~~~~~~l~~~~G~i~vd~-~~~-Ts~~gVfAaGD~~~~~---~~v~Ai~~G~~AA~~I~~~L~~~  604 (604)
T PRK13984        539 DYSYLPEELKSKLEFVRGRILTNE-YGQ-TSIPWLFAGGDIVHGP---DIIHGVADGYWAAEGIDMYLRKQ  604 (604)
T ss_pred             ChhhhhhhhccCccccCCeEEeCC-CCc-cCCCCEEEecCcCCch---HHHHHHHHHHHHHHHHHHHhccC
Confidence            844 332   23433578999998 677 8999999999999864   34679999999999999998763

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.85  E-value=6.9e-20  Score=208.76  Aligned_cols=299  Identities=15%  Similarity=0.136  Sum_probs=171.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccc-cccCccccCcccccccccccCCCcEEEEceeEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFT-LIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  107 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~  107 (706)
                      ..++|+|||||+|||++|..|++.  |++|+|+|+++....  .+. .++......+.+......+...++++..+....
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~~GG--~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~  384 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPEIGG--MLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIG  384 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCCCCC--eeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence            468999999999999999999998  899999999985321  111 111111111111112233344688887644221


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                           +.+.+.+ ....||.+++|||+.. ..+++||.+    ..|..             .  .++.+..  .......
T Consensus       385 -----~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~----~~gv~-------------~--a~~~l~~--~~~~~~~  437 (639)
T PRK12809        385 -----RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHED----APGVI-------------Q--ALPFLTA--HTRQLMG  437 (639)
T ss_pred             -----CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCc----cCCcE-------------e--HHHHHHH--HHHhhcc
Confidence                 1122222 1346999999999864 346677721    10100             0  0000000  0000000


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcC-CCc
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVL-FPS  265 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~-~~~  265 (706)
                      ..        ..   ...  .+....+.        ..+.++|+.. ... ....+.+.|..   +|+++.+.... ++ 
T Consensus       438 ~~--------~~---~~~--~~~~~~gk--------~vvViGgG~~-a~d-~a~~~~~~Ga~---~Vt~v~rr~~~~~~-  490 (639)
T PRK12809        438 LP--------ES---EEY--PLTDVEGK--------RVVVLGGGDT-TMD-CLRTSIRLNAA---SVTCAYRRDEVSMP-  490 (639)
T ss_pred             Cc--------cc---ccc--ccccCCCC--------eEEEECCcHH-HHH-HHHHHHHcCCC---eEEEeeecCcccCC-
Confidence            00        00   000  00001111        1222333321 122 22233345532   48888766544 33 


Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEEEE---eC-----------------CCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAVFK---SE-----------------DKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~~~---~~-----------------~~g~~i~~D~vI~a~G~~~~  324 (706)
                       .....+. .+++.||++++++.+.+|..+ ++.+...   ..                 ++..++++|+||+++|+.|+
T Consensus       491 -~~~~e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~  568 (639)
T PRK12809        491 -GSRKEVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAH  568 (639)
T ss_pred             -CCHHHHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCC
Confidence             1122222 356789999999999999743 3333211   11                 12247999999999999997


Q ss_pred             --hhhhcCCC-CCCCCceeeCcc---ccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         325 --PELATSRL-VDQSGYVNVDKA---TLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       325 --~~~~~~~l-~~~~G~i~vd~~---~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                        .++...++ ++++|++.||+.   +++ |+.|+|||+|||...  +.+...|+.+|+.+|.+|...|.++
T Consensus       569 ~~~~~~~~gl~~~~~G~i~vd~~~~~~~~-Ts~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~~  637 (639)
T PRK12809        569 AMPWLQGSGIKLDKWGLIQTGDVGYLPTQ-THLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDTK  637 (639)
T ss_pred             ccccccccCcccCCCCCEEeCCCcccCcc-cCCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhhh
Confidence              34555677 678899999852   355 899999999999976  3477899999999999999998764

>KOG4716|consensus

Probab=99.84  E-value=4.2e-20  Score=179.91  Aligned_cols=302  Identities=16%  Similarity=0.239  Sum_probs=191.1

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEc---CCCCcc-cC-----------c-------cc-----cc-cc
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE---PTDDHY-YQ-----------P-------MF-----TL-IG   77 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie---~~~~~~-~~-----------p-------~~-----~~-~~   77 (706)
                      ..+.++|.+|||||-+||+||++.+..  |.+|.++|   +.|.-. |.           |       ++     +. ..
T Consensus        15 ~~sydyDLIviGgGSgGLacaKeAa~~--G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~k   92 (503)
T KOG4716|consen   15 FSSYDYDLIVIGGGSGGLACAKEAADL--GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARK   92 (503)
T ss_pred             cccCCccEEEEcCCcchhhHHHHHHhc--CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHh
Confidence            455789999999999999999999999  89999988   333200 00           0       00     00 00


Q ss_pred             CccccCc-cccccccccc-------------------CCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccc
Q psy8791          78 GGMKKLS-DSRRPMKSVL-------------------PSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQ  135 (706)
Q Consensus        78 ~~~~~~~-~~~~~~~~~~-------------------~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~  135 (706)
                      -|+.-.+ .+.-+...+.                   ...++++.+--+-+|+..-..+..+|  +.+.++++|||||.+
T Consensus        93 yGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~R  172 (503)
T KOG4716|consen   93 YGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLR  172 (503)
T ss_pred             hCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCC
Confidence            0111111 1111111111                   12333444333334433322333344  357899999999999


Q ss_pred             cccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCC
Q psy8791         136 MYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGP  215 (706)
Q Consensus       136 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~  215 (706)
                      |++|.|||  +.|+....+++.                            .                     |...++..
T Consensus       173 PrYp~IpG--~~Ey~ITSDDlF----------------------------s---------------------l~~~PGkT  201 (503)
T KOG4716|consen  173 PRYPDIPG--AKEYGITSDDLF----------------------------S---------------------LPYEPGKT  201 (503)
T ss_pred             CCCCCCCC--ceeeeecccccc----------------------------c---------------------ccCCCCce
Confidence            99999999  456664433221                            0                     11224555


Q ss_pred             EEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-chhHHHHHHHHHHhCCceEEcCCceEEEeC
Q psy8791         216 VLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-SPFYAEKIHDILIGRGVDVHKGKALVEIDL  294 (706)
Q Consensus       216 ~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  294 (706)
                      .+++++....+|+|-           |...|..    +++.-+.-.+-+ +.++.+.+.+.++++||++...+...+++.
T Consensus       202 LvVGa~YVaLECAgF-----------L~gfg~~----vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq  266 (503)
T KOG4716|consen  202 LVVGAGYVALECAGF-----------LKGFGYD----VTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQ  266 (503)
T ss_pred             EEEccceeeeehhhh-----------HhhcCCC----cEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeee
Confidence            677777777888763           6666654    455444443333 789999999999999999998865555543


Q ss_pred             ---CCCEEEEEeCC--CceEEeecEEEECCCCCchhh---hhcCCC-C-CCCCceeeCccccccCCCCCEEEccccCCCC
Q psy8791         295 ---ANKEAVFKSED--KTERLPYAIMHVTPPMGPVPE---LATSRL-V-DQSGYVNVDKATLQHVKYSNVFAIGDCSNLP  364 (706)
Q Consensus       295 ---~~~~v~~~~~~--~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~-~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~  364 (706)
                         ..-.|....+.  ++.+-++|+|+||+|..+..-   +.+.|+ . ..+|.|.+|+.  +.|+.|+|||+||+....
T Consensus       267 ~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~--e~t~vp~vyAvGDIl~~k  344 (503)
T KOG4716|consen  267 IDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDE--EATNVPYVYAVGDILEDK  344 (503)
T ss_pred             ccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChH--HhcCCCceEEecceecCC
Confidence               22234333333  333567999999999999832   445577 3 35799999983  669999999999998763


Q ss_pred             CCchHHHHHHhHHHHHHHHHHHHcCCCCCCcccceee
Q psy8791         365 TSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTS  401 (706)
Q Consensus       365 ~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~  401 (706)
                       |.+...|++.|+.+|+.+-   .|..-...|.+..+
T Consensus       345 -pELTPvAIqsGrlLa~Rlf---~gs~q~~dy~~V~T  377 (503)
T KOG4716|consen  345 -PELTPVAIQSGRLLARRLF---AGSTQLMDYDDVAT  377 (503)
T ss_pred             -cccchhhhhhchHHHHHHh---cCcceeeeccCCce
Confidence             5677789999999999884   34433456665433

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.84  E-value=4.9e-21  Score=199.60  Aligned_cols=168  Identities=23%  Similarity=0.422  Sum_probs=130.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .+++|||||||++|+.++..|.+..++.+|++||++++|.|+|.++.+..|....+.+..|++.++...           
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~-----------   70 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKS-----------   70 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhccc-----------
Confidence            466899999999999999999987435899999999999999999998888877777776664433321           


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEeeC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYE  625 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd  625 (706)
                                                                       .+++|++++|++||+++++|++.++++++||
T Consensus        71 -------------------------------------------------~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD  101 (405)
T COG1252          71 -------------------------------------------------GNVQFVQGEVTDIDRDAKKVTLADLGEISYD  101 (405)
T ss_pred             -------------------------------------------------CceEEEEEEEEEEcccCCEEEeCCCcccccc
Confidence                                                             1589999999999999999999998899999


Q ss_pred             EEEEecCcccCccCCCCchh------hhcccccccccc-cCccchhhhcc---CccEEEE-----cHHHHHHHHHHHhhh
Q psy8791         626 YMIVASGIQMYYDRVKGGTT------SLEDRGKMRGVS-DGFSTVTWEQK---HKQYQLV-----SPEIRAKAYDLTKRK  690 (706)
Q Consensus       626 ~lViAtGs~~~~p~i~G~~~------~~~~~~~~~~~~-~~~~~~~~~~~---~k~vvVi-----G~E~A~~l~~~~~~~  690 (706)
                      +||||+||.+..+.+||+.+      +++++..++.++ ..++.......   ...|+|+     |+|+|++|+++..+.
T Consensus       102 ~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l  181 (405)
T COG1252         102 YLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRL  181 (405)
T ss_pred             EEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHH
Confidence            99999999999999999764      334443433333 12222211111   1247777     999999999999877


Q ss_pred             hhh
Q psy8791         691 MKK  693 (706)
Q Consensus       691 ~~~  693 (706)
                      +++
T Consensus       182 ~~~  184 (405)
T COG1252         182 LKK  184 (405)
T ss_pred             hhh
Confidence            665

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.83  E-value=3.1e-19  Score=201.23  Aligned_cols=288  Identities=20%  Similarity=0.174  Sum_probs=170.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  107 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~  107 (706)
                      ...++|+|||||++||++|..|++.  |++|+++|+.+....... ..++......+.....+..+...++++..+....
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~~~GG~l~-~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGPKLGGMMR-YGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCeee-ecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            3457899999999999999999998  899999999886432110 0111111111112222333444677776543221


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                      .+...     .+ ....||++++|+|+.. ....++|.+    ..                                   
T Consensus       212 ~~~~~-----~~-~~~~~D~Vi~AtG~~~~~~~~i~g~~----~~-----------------------------------  246 (564)
T PRK12771        212 EDITL-----EQ-LEGEFDAVFVAIGAQLGKRLPIPGED----AA-----------------------------------  246 (564)
T ss_pred             CcCCH-----HH-HHhhCCEEEEeeCCCCCCcCCCCCCc----cC-----------------------------------
Confidence            11111     00 1125899999999864 344566621    00                                   


Q ss_pred             CCCCCcccCCChhHHHHHHHHHH----hccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcC
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQ----HFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVL  262 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~----~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~  262 (706)
                          .+..   .   ..+.....    ...++++        +.++|+..  +......+.+.+..   .++++++.+..
T Consensus       247 ----gv~~---~---~~~l~~~~~~~~~~~gk~v--------~ViGgg~~--a~d~a~~a~~lga~---~v~ii~r~~~~  303 (564)
T PRK12771        247 ----GVLD---A---VDFLRAVGEGEPPFLGKRV--------VVIGGGNT--AMDAARTARRLGAE---EVTIVYRRTRE  303 (564)
T ss_pred             ----CcEE---H---HHHHHHhhccCCcCCCCCE--------EEECChHH--HHHHHHHHHHcCCC---EEEEEEecCcc
Confidence                0000   0   00011110    1112222        22333322  11122234444422   36777665432


Q ss_pred             -CCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-EE--E---EEe------------CCCceEEeecEEEECCCCCc
Q psy8791         263 -FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-EA--V---FKS------------EDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       263 -~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~v--~---~~~------------~~~g~~i~~D~vI~a~G~~~  323 (706)
                       ++  .....+. .+.+.||+++++..+.++..+++ .+  .   ...            .++..++++|+||+++|+.|
T Consensus       304 ~~~--~~~~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p  380 (564)
T PRK12771        304 DMP--AHDEEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI  380 (564)
T ss_pred             cCC--CCHHHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence             22  2222333 34568999999999999976542 21  1   111            11224799999999999999


Q ss_pred             h-hhhhc-CCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         324 V-PELAT-SRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       324 ~-~~~~~-~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      + +++.+ .++.+++|++.||+. .+.|+.|+|||+|||+..  +++...|+.||+.+|.+|.+.+.|++.
T Consensus       381 ~~~~~~~~~gl~~~~G~i~vd~~-~~~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~g~~~  448 (564)
T PRK12771        381 DSAGLESVPGVEVGRGVVQVDPN-FMMTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLGGEPY  448 (564)
T ss_pred             chhhhhhccCcccCCCCEEeCCC-CccCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            8 45554 466677899999984 455999999999999875  458889999999999999999998764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.80  E-value=2.3e-17  Score=196.20  Aligned_cols=284  Identities=14%  Similarity=0.088  Sum_probs=173.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccccc-ccCccccCccc-ccccccccCC-CcEEEE-cee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL-IGGGMKKLSDS-RRPMKSVLPS-GATWVK-DKI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~-~~~~~~~~~~~-~~~~~~~~~~-~v~~i~-~~v  105 (706)
                      .++|+|||||+|||+||..|++.  +++|+|||+++....+..... ...+ .+...+ .....++... ++++.. .+|
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~--G~~V~liD~~~~~GG~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~v~v~~~t~V  239 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARA--GARVILVDEQPEAGGSLLSEAETIDG-KPAADWAAATVAELTAMPEVTLLPRTTA  239 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCCCeeeccccccCC-ccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence            57999999999999999999998  999999999876332211110 0000 111111 1112233333 577765 677


Q ss_pred             EEEEcCCCEEEe-----------C-----CCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCc
Q psy8791         106 VSFDPENNRVRT-----------Q-----AGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPR  169 (706)
Q Consensus       106 ~~id~~~~~v~~-----------~-----~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (706)
                      ..++..+.....           .     ...++.||.||||||+.+..+++||.+                        
T Consensus       240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~------------------------  295 (985)
T TIGR01372       240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANND------------------------  295 (985)
T ss_pred             EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCC------------------------
Confidence            777653321111           0     012689999999999999988899832                        


Q ss_pred             cccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCC
Q psy8791         170 RTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRD  249 (706)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~  249 (706)
                                 +      +  .+..   ...+....+......+.++        +.+++++.  ++.....+.+.|.. 
T Consensus       296 -----------~------p--gV~~---~~~~~~~l~~~~~~~gk~V--------vViG~G~~--g~e~A~~L~~~G~~-  342 (985)
T TIGR01372       296 -----------R------P--GVML---AGAARTYLNRYGVAPGKRI--------VVATNNDS--AYRAAADLLAAGIA-  342 (985)
T ss_pred             -----------C------C--CcEE---chHHHHHHHhhCcCCCCeE--------EEECCCHH--HHHHHHHHHHcCCc-
Confidence                       0      0  1111   1111111111111122222        22344432  33444556666643 


Q ss_pred             CcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC--EEEEEe-CCCceEEeecEEEECCCCCchhh
Q psy8791         250 AAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKS-EDKTERLPYAIMHVTPPMGPVPE  326 (706)
Q Consensus       250 ~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~v~~~~-~~~g~~i~~D~vI~a~G~~~~~~  326 (706)
                        .+++++..+.+      ...+.+.|++.||++++++.+.++..++.  .+.+.. .++++++++|.|++++|.+|+..
T Consensus       343 --vV~vv~~~~~~------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~  414 (985)
T TIGR01372       343 --VVAIIDARADV------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVH  414 (985)
T ss_pred             --eEEEEccCcch------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhH
Confidence              37777766433      34567788999999999999999987653  234432 23567899999999999999965


Q ss_pred             hh-cCCCCCCCCceeeCcc---ccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         327 LA-TSRLVDQSGYVNVDKA---TLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       327 ~~-~~~l~~~~G~i~vd~~---~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      +. .++.     .+..|+.   ....|+.|+||++|||+...   .+..|..+|+.+|..|+..+..
T Consensus       415 L~~~lg~-----~~~~~~~~~~~~~~t~v~gVyaaGD~~g~~---~~~~A~~eG~~Aa~~i~~~lg~  473 (985)
T TIGR01372       415 LFSQRGG-----KLAWDAAIAAFLPGDAVQGCILAGAANGLF---GLAAALADGAAAGAAAARAAGF  473 (985)
T ss_pred             HHHhcCC-----CeeeccccCceecCCCCCCeEEeeccCCcc---CHHHHHHHHHHHHHHHHHHcCC
Confidence            54 3443     1111110   11236789999999999653   5667999999999999888754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1346|consensus

Probab=99.80  E-value=1.7e-18  Score=172.91  Aligned_cols=318  Identities=17%  Similarity=0.189  Sum_probs=202.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccc-c-ccCccc--------------------cCcccc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFT-L-IGGGMK--------------------KLSDSR   87 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~-~-~~~~~~--------------------~~~~~~   87 (706)
                      ...+|||||.+..+++..++....+..|.+|...+...|. |-+. . +..+..                    .++.+.
T Consensus       179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff  258 (659)
T KOG1346|consen  179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF  258 (659)
T ss_pred             CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence            4589999999999888888777678899999888775554 2221 0 110100                    011111


Q ss_pred             cccccc---cCCCcEEEEc-eeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCccccccccccccccccccc
Q psy8791          88 RPMKSV---LPSGATWVKD-KIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTF  163 (706)
Q Consensus        88 ~~~~~~---~~~~v~~i~~-~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  163 (706)
                      ..-.++   ..-++-+.++ +|+.||...+.|.++||.++.||.+.||||.+|.....-.     -|             
T Consensus       259 vspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~-----~A-------------  320 (659)
T KOG1346|consen  259 VSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFE-----EA-------------  320 (659)
T ss_pred             eChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhh-----hc-------------
Confidence            111111   1245666664 8889999999999999999999999999999986533211     00             


Q ss_pred             CccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChh---HHHHHHHHH
Q psy8791         164 PLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP---MKAVLIGDE  240 (706)
Q Consensus       164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~---~~~~~~~~~  240 (706)
                                       -.+..+    .+..+..+.++..+.+-+..- ..          |.+.|+.   .|+++.+..
T Consensus       321 -----------------~~evk~----kit~fr~p~DF~rlek~~aek-~s----------iTIiGnGflgSELacsl~r  368 (659)
T KOG1346|consen  321 -----------------SEEVKQ----KITYFRYPADFKRLEKGLAEK-QS----------ITIIGNGFLGSELACSLKR  368 (659)
T ss_pred             -----------------CHHhhh----heeEEecchHHHHHHHhhhhc-ce----------EEEEcCcchhhhHHHHHHH
Confidence                             000000    111112233333333333322 11          2222332   355555544


Q ss_pred             HHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEE
Q psy8791         241 YLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHV  317 (706)
Q Consensus       241 ~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~  317 (706)
                      ..+..|    .+|+-+......+.   ++.+++.-.+.+++.||+++.+..|.++....+.+.+ .++||.++..|+||.
T Consensus       369 k~r~~g----~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~l-kL~dG~~l~tD~vVv  443 (659)
T KOG1346|consen  369 KYRNEG----VEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVL-KLSDGSELRTDLVVV  443 (659)
T ss_pred             hhhccC----cEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEE-EecCCCeeeeeeEEE
Confidence            444333    34555544433332   4677888888999999999999999988766555655 366999999999999


Q ss_pred             CCCCCchhhhh-cCCC-CCC-CCceeeCccccccCCCCCEEEccccCCCCCCchH-------HHHHHhHHHHHHHHHHHH
Q psy8791         318 TPPMGPVPELA-TSRL-VDQ-SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTA-------AAVAGQCKVVYDNLSAVM  387 (706)
Q Consensus       318 a~G~~~~~~~~-~~~l-~~~-~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~-------~~a~~qg~~~a~ni~~~l  387 (706)
                      |+|..||..+. .+|| .|+ -|.++||. .|+.  ..|||++||++.+.++.++       .+|.-.|+.+.+|+    
T Consensus       444 avG~ePN~ela~~sgLeiD~~lGGfrvna-eL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENM----  516 (659)
T KOG1346|consen  444 AVGEEPNSELAEASGLEIDEKLGGFRVNA-ELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENM----  516 (659)
T ss_pred             EecCCCchhhcccccceeecccCcEEeeh-eeec--ccceeeecchhhhhcccccceeccccccceeeceeccccc----
Confidence            99999996555 4678 554 48899998 6764  6899999999998776543       36778899999998    


Q ss_pred             cCCCCCCcccceeeEEEEecCCeEE
Q psy8791         388 KNRALPHEYNGYTSCPLVTGYSKCV  412 (706)
Q Consensus       388 ~g~~~~~~~~~~~~~~~~~G~~~~~  412 (706)
                      .|...++..  .+.....+|+..+.
T Consensus       517 tgAakpy~h--qsmFWsdlgP~igy  539 (659)
T KOG1346|consen  517 TGAAKPYKH--QSMFWSDLGPEIGY  539 (659)
T ss_pred             ccccCCccc--cceeeeccCccccc
Confidence            454443333  33445567766544

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.78  E-value=1.2e-17  Score=181.04  Aligned_cols=108  Identities=10%  Similarity=0.065  Sum_probs=78.1

Q ss_pred             CCceEEcCCceEEEeC--CC-CE---EEEEeC----------------CCceEEeecEEEECCCCC--chhh--hhc-CC
Q psy8791         279 RGVDVHKGKALVEIDL--AN-KE---AVFKSE----------------DKTERLPYAIMHVTPPMG--PVPE--LAT-SR  331 (706)
Q Consensus       279 ~gV~v~~~~~v~~i~~--~~-~~---v~~~~~----------------~~g~~i~~D~vI~a~G~~--~~~~--~~~-~~  331 (706)
                      ++|.+++.....+|..  ++ +.   +.+...                ++.+++++|.||.+.|++  |.+.  +.. .+
T Consensus       288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~g  367 (491)
T PLN02852        288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRG  367 (491)
T ss_pred             ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcC
Confidence            5789998888888863  11 22   223211                122468999999999998  4432  222 34


Q ss_pred             C-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         332 L-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       332 l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      + .+.+|+|.+|+ ..+ |+.|+|||+|||...|. .....+..+|..+|.+|..++..
T Consensus       368 v~~n~~G~V~~d~-~~~-T~ipGvyAaGDi~~Gp~-gvI~t~~~dA~~ta~~i~~d~~~  423 (491)
T PLN02852        368 VVPNVHGRVLSSA-SGA-DTEPGLYVVGWLKRGPT-GIIGTNLTCAEETVASIAEDLEQ  423 (491)
T ss_pred             eeECCCceEEeCC-CCc-cCCCCEEEeeeEecCCC-CeeeecHhhHHHHHHHHHHHHHc
Confidence            4 67889999997 455 88999999999998754 35567889999999999998765

>KOG0404|consensus

Probab=99.78  E-value=8.7e-18  Score=154.75  Aligned_cols=292  Identities=14%  Similarity=0.154  Sum_probs=180.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-----------ccccccCccccCcccccccccccCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-----------MFTLIGGGMKKLSDSRRPMKSVLPSG   97 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-----------~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (706)
                      .+.+|+|||+|+|+-.||.+++|.  ..+-+|+|-.-...-.|           .+|.++.+...++....-.++-.+++
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~G   84 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFG   84 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhc
Confidence            345899999999999999999998  67778887422111111           12223333333332222223334578


Q ss_pred             cEEEEceeEEEEcCCCEE-EeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCcccccccc
Q psy8791          98 ATWVKDKIVSFDPENNRV-RTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLR  176 (706)
Q Consensus        98 v~~i~~~v~~id~~~~~v-~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (706)
                      .+++..+|.++|...+-. ...+.+.+..|.+|+|||+..+...+||.-                               
T Consensus        85 t~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~g-------------------------------  133 (322)
T KOG0404|consen   85 TEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEG-------------------------------  133 (322)
T ss_pred             ceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCC-------------------------------
Confidence            899999999999887732 223445899999999999998888888820                               


Q ss_pred             CccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCe-eeCChhHHHHHHHHHHHHHcCCCCCcEEEE
Q psy8791         177 RPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPI-KCGGAPMKAVLIGDEYLRKHKKRDAAKLTY  255 (706)
Q Consensus       177 ~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v-~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l  255 (706)
                          -.++|+. +-..|.+++.-  .-      -|         .+.+. +++|+ . .++.-+.+|.+.+.    +|++
T Consensus       134 ----e~~fWqr-GiSaCAVCDGa--ap------if---------rnk~laVIGGG-D-sA~EEA~fLtkyas----kVyi  185 (322)
T KOG0404|consen  134 ----EGEFWQR-GISACAVCDGA--AP------IF---------RNKPLAVIGGG-D-SAMEEALFLTKYAS----KVYI  185 (322)
T ss_pred             ----cchHHhc-ccchhhcccCc--ch------hh---------cCCeeEEEcCc-H-HHHHHHHHHHhhcc----EEEE
Confidence                0111111 10122222211  00      01         12222 34444 2 23334456777764    4999


Q ss_pred             EeCCCcCCCchhHHHHHHHH-HHhCCceEEcCCceEEEeCCCCE-----EEEEeCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         256 CTGMGVLFPSPFYAEKIHDI-LIGRGVDVHKGKALVEIDLANKE-----AVFKSEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~-l~~~gV~v~~~~~v~~i~~~~~~-----v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      +++.+.+-    .+..+++. ++..+|+++.++.+.+...+++.     +.-+.+.+.+.++.+-+++++|..|++.+.+
T Consensus       186 i~Rrd~fR----As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~  261 (322)
T KOG0404|consen  186 IHRRDHFR----ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLK  261 (322)
T ss_pred             EEEhhhhh----HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhc
Confidence            99887653    34444444 45579999999988887766432     2223333556799999999999999976666


Q ss_pred             CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHH
Q psy8791         330 SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVM  387 (706)
Q Consensus       330 ~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l  387 (706)
                      ..+ +|++|+|.+.+- -..|+.|++||+||+..... ..+..|...|-.+|....++|
T Consensus       262 gqve~d~~GYi~t~pg-ts~TsvpG~FAAGDVqD~ky-RQAvTaAgsGciaaldAe~yL  318 (322)
T KOG0404|consen  262 GQVELDEDGYIVTRPG-TSLTSVPGVFAAGDVQDKKY-RQAVTAAGSGCIAALDAERYL  318 (322)
T ss_pred             CceeeccCceEEeccC-cccccccceeeccccchHHH-HHHHhhhccchhhhhhHHHHh
Confidence            566 899999999873 34599999999999887532 123333344444444443333

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.77  E-value=5.9e-19  Score=192.23  Aligned_cols=168  Identities=15%  Similarity=0.260  Sum_probs=119.3

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      .+++++|||||||+||+.+|++|.+.  +.+|+|||+++++.|.|+++.+..|......+                    
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~--~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~--------------------   64 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPK--KYNITVISPRNHMLFTPLLPQTTTGTLEFRSI--------------------   64 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcC--CCeEEEEcCCCCcchhhhHHHhcccCCChHHh--------------------
Confidence            44577999999999999999998643  68999999999999888776555543332222                    


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEc------
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRT------  616 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~------  616 (706)
                                                                ..++...+. .+++|+.++|++||+++++|++      
T Consensus        65 ------------------------------------------~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~  102 (424)
T PTZ00318         65 ------------------------------------------CEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKS  102 (424)
T ss_pred             ------------------------------------------HHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEeccccc
Confidence                                                      223333333 4789999999999999999987      


Q ss_pred             ----CCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchh----------h-------hccCccEEEE
Q psy8791         617 ----QAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVT----------W-------EQKHKQYQLV  675 (706)
Q Consensus       617 ----~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~----------~-------~~~~k~vvVi  675 (706)
                          ++|.+++||+||||||+++..|++||..+.   +..++...+......          .       ....++++||
T Consensus       103 ~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVv  179 (424)
T PTZ00318        103 NNANVNTFSVPYDKLVVAHGARPNTFNIPGVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVV  179 (424)
T ss_pred             ccccCCceEecCCEEEECCCcccCCCCCCCHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEE
Confidence                467789999999999999999999997642   112222221111000          0       0112478888


Q ss_pred             -----cHHHHHHHHHHHhhhhhhhcccc
Q psy8791         676 -----SPEIRAKAYDLTKRKMKKEAQWI  698 (706)
Q Consensus       676 -----G~E~A~~l~~~~~~~~~~~~~~~  698 (706)
                           |+|+|.+|+++.++..++.++.+
T Consensus       180 GgG~~GvE~A~~l~~~~~~~~~~~~~~~  207 (424)
T PTZ00318        180 GGGPTGVEFAAELADFFRDDVRNLNPEL  207 (424)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence                 99999999998876665555544

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=3.9e-17  Score=159.93  Aligned_cols=284  Identities=17%  Similarity=0.154  Sum_probs=170.4

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc----cccccCccccC-cccccccc-cccCCCcE
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM----FTLIGGGMKKL-SDSRRPMK-SVLPSGAT   99 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~----~~~~~~~~~~~-~~~~~~~~-~~~~~~v~   99 (706)
                      .....++|+|||||+||.+||.+.+|+  |.+.-|+-.+  |..+.+    ...+.+-.... ..+...++ ++..+.++
T Consensus       207 ~~k~~yDVLvVGgGPAgaaAAiYaARK--GiRTGl~aer--fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vD  282 (520)
T COG3634         207 NAKDAYDVLVVGGGPAGAAAAIYAARK--GIRTGLVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVD  282 (520)
T ss_pred             hccCCceEEEEcCCcchhHHHHHHHhh--cchhhhhhhh--hCCeeccccchhheeccccccchHHHHHHHHHHhhcCch
Confidence            445678999999999999999999998  6544433211  122211    00000000000 00111111 12224555


Q ss_pred             EEE-ceeEEEEcC-----CCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccc
Q psy8791         100 WVK-DKIVSFDPE-----NNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLD  173 (706)
Q Consensus       100 ~i~-~~v~~id~~-----~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (706)
                      .+. .+++++.+.     ...|++.+|..+..+.+|++||++++..++||-                             
T Consensus       283 imn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE-----------------------------  333 (520)
T COG3634         283 VMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGE-----------------------------  333 (520)
T ss_pred             hhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCch-----------------------------
Confidence            554 355555552     337899999999999999999999999999992                             


Q ss_pred             cccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCE-EEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcE
Q psy8791         174 FLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPV-LYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAK  252 (706)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~-vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~  252 (706)
                              ++.-.   +.+..+..++.-        -|++.++ |++.|+++++.       +.-.+      |+-  ..
T Consensus       334 --------~e~rn---KGVayCPHCDGP--------LF~gK~VAVIGGGNSGvEA-------AIDLA------Giv--~h  379 (520)
T COG3634         334 --------DEYRN---KGVAYCPHCDGP--------LFKGKRVAVIGGGNSGVEA-------AIDLA------GIV--EH  379 (520)
T ss_pred             --------HHHhh---CCeeeCCCCCCc--------ccCCceEEEECCCcchHHH-------HHhHH------hhh--he
Confidence                    11111   133333222221        1333333 34444444331       11111      110  13


Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEE---EEEeCCCceE--EeecEEEECCCCCch-h
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLANKEA---VFKSEDKTER--LPYAIMHVTPPMGPV-P  325 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v---~~~~~~~g~~--i~~D~vI~a~G~~~~-~  325 (706)
                      |++++-.+.+-    .-+.+++.|+. .+|+++++..-++|..++.+|   .+..-++|++  ++-+-|++-+|..|| .
T Consensus       380 VtllEF~~eLk----AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~  455 (520)
T COG3634         380 VTLLEFAPELK----ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTE  455 (520)
T ss_pred             eeeeecchhhh----hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChh
Confidence            78877665543    34455666665 699999999999999886554   3333345554  556669999999999 6


Q ss_pred             hhhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         326 ELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       326 ~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      |++.+=-++++|-|.||..  ..|+.|+|||+|||...+.. ....++..|..++-+.
T Consensus       456 WLkg~vel~~rGEIivD~~--g~TsvpGvFAAGD~T~~~yK-QIIIamG~GA~AaL~A  510 (520)
T COG3634         456 WLKGAVELNRRGEIIVDAR--GETNVPGVFAAGDCTTVPYK-QIIIAMGEGAKASLSA  510 (520)
T ss_pred             HhhchhhcCcCccEEEecC--CCcCCCceeecCcccCCccc-eEEEEecCcchhhhhh
Confidence            7776623889999999984  56999999999999998753 3333444454444443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.69  E-value=4e-17  Score=175.08  Aligned_cols=155  Identities=18%  Similarity=0.297  Sum_probs=109.9

Q ss_pred             cccccCcchhHHHHHHHHHhh-cCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSR-LGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~-~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      +|||||||+||+.+|.+++++ .++.+|+|||+++++.|.+.++.+..|..                             
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~-----------------------------   51 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHY-----------------------------   51 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeC-----------------------------
Confidence            589999999999999999765 45789999999998887775433222211                             


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEeeCE
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEISYEY  626 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd~  626 (706)
                                                       ..+++..++.++++ .|++|+.++|++||+++++|.+++|++++||+
T Consensus        52 ---------------------------------~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~   98 (364)
T TIGR03169        52 ---------------------------------SLDEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDV   98 (364)
T ss_pred             ---------------------------------CHHHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccE
Confidence                                             11222333444443 58999999999999999999999999999999


Q ss_pred             EEEecCcccCccCCCCchhhhcccccccccccCcc----chh-h--hccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         627 MIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFS----TVT-W--EQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       627 lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~----~~~-~--~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||||||+++..|++||..+..   ..++...+...    ... .  ....++|+||     |+|+|..|++..+
T Consensus        99 LviAtG~~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~  169 (364)
T TIGR03169        99 LSLDVGSTTPLSGVEGAADLA---VPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLP  169 (364)
T ss_pred             EEEccCCCCCCCCCCcccccc---cccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999954321   11111111111    000 1  1235689999     9999999987653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.67  E-value=2.3e-16  Score=170.62  Aligned_cols=160  Identities=16%  Similarity=0.137  Sum_probs=106.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCc-ceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~-~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +..+|||||||+||++||..|+++.++.+|+||++++++.|.. .+.                +.++..           
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~----------------~~~~~~-----------   54 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLS----------------KSMLLE-----------   54 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCC----------------HHHHCC-----------
Confidence            4568999999999999999999987778999999988776532 110                000000           


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEec-eEEEEEcCCCeEEcCCCcEEe
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                       .... .....+...+.+.+|+++.+ +|.+||+++++|.+++|+++.
T Consensus        55 ---------------------------------~~~~-~~~~~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~  100 (396)
T PRK09754         55 ---------------------------------DSPQ-LQQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWH  100 (396)
T ss_pred             ---------------------------------CCcc-ccccCCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEE
Confidence                                             0000 00011122233468999765 699999999999999999999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|+.+++++..  .+.+..++...+..........+++++||     |+|+|..|+++..
T Consensus       101 yd~LViATGs~~~~~p~~~~~--~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~  168 (396)
T PRK09754        101 WDQLFIATGAAARPLPLLDAL--GERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRC  168 (396)
T ss_pred             cCEEEEccCCCCCCCCCCCcC--CCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            999999999999877776643  22233333222222222222356889999     9999999876543

>KOG3851|consensus

Probab=99.67  E-value=3.6e-17  Score=158.53  Aligned_cols=124  Identities=52%  Similarity=0.981  Sum_probs=108.7

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +++++|+|||||.+|+.+|.++.++.+..+|.|||+.++|+|+|+|+.++||...+...+.+..+|++.           
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~-----------  105 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK-----------  105 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC-----------
Confidence            467899999999999999999999999999999999999999999999999998766665554444443           


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEee
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~y  624 (706)
                                                                         +..+++++|...+|++++|.+.+|++|+|
T Consensus       106 ---------------------------------------------------~a~wi~ekv~~f~P~~N~v~t~gg~eIsY  134 (446)
T KOG3851|consen  106 ---------------------------------------------------GATWIKEKVKEFNPDKNTVVTRGGEEISY  134 (446)
T ss_pred             ---------------------------------------------------CcHHHHHHHHhcCCCcCeEEccCCcEEee
Confidence                                                               55667777888899999999999999999


Q ss_pred             CEEEEecCcccCccCCCCchhhhccc
Q psy8791         625 EYMIVASGIQMYYDRVKGGTTSLEDR  650 (706)
Q Consensus       625 d~lViAtGs~~~~p~i~G~~~~~~~~  650 (706)
                      |+||||+|-.-+.-.|+|+.|.++..
T Consensus       135 dylviA~Giql~y~~IkGl~Eal~tP  160 (446)
T KOG3851|consen  135 DYLVIAMGIQLDYGKIKGLVEALDTP  160 (446)
T ss_pred             eeEeeeeeceeccchhcChHhhccCC
Confidence            99999999999999999999888765

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.65  E-value=3.1e-17  Score=160.38  Aligned_cols=110  Identities=26%  Similarity=0.464  Sum_probs=75.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc-c-ccccCccccCcccc------cccccccCCCcEE-EE
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM-F-TLIGGGMKKLSDSR------RPMKSVLPSGATW-VK  102 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~-~-~~~~~~~~~~~~~~------~~~~~~~~~~v~~-i~  102 (706)
                      ||||||||+||++||.+|++.  +++|+|||+.+...+... + ..............      .-.+++...++++ +.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~--~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   78 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP--GAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN   78 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT--TSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred             CEEEEecHHHHHHHHHHHhcC--CCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence            699999999999999999977  899999999885444211 1 11100000000000      1122223467888 56


Q ss_pred             ceeEEEEcCCCEE----------EeCCCeEEEecEEEEccccccccCCCCC
Q psy8791         103 DKIVSFDPENNRV----------RTQAGSEISYEYMIVASGIQMYYDRVKG  143 (706)
Q Consensus       103 ~~v~~id~~~~~v----------~~~~g~~~~yd~lviAtG~~~~~~~~~g  143 (706)
                      +++.+|+...+.+          ...++.++.||+||+|||+.+..+.+||
T Consensus        79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g  129 (201)
T PF07992_consen   79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG  129 (201)
T ss_dssp             HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred             cccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence            8999999988842          2234568999999999999999899998

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.65  E-value=4.4e-15  Score=161.93  Aligned_cols=269  Identities=16%  Similarity=0.136  Sum_probs=149.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc----cCcc-------------------cc-----------
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY----YQPM-------------------FT-----------   74 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~----~~p~-------------------~~-----------   74 (706)
                      ..++|+|||||+|||+||++|++.  |++|+++|+++...    |.+.                   +.           
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~--G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m   86 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRRE--GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM   86 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhc--CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence            457999999999999999999998  89999999987521    1110                   00           


Q ss_pred             ---cccCcc------------ccCcccccccccccC-CCcE--E-EEceeEEEEcCCC--EEEeCCC--e--EEEecEEE
Q psy8791          75 ---LIGGGM------------KKLSDSRRPMKSVLP-SGAT--W-VKDKIVSFDPENN--RVRTQAG--S--EISYEYMI  129 (706)
Q Consensus        75 ---~~~~~~------------~~~~~~~~~~~~~~~-~~v~--~-i~~~v~~id~~~~--~v~~~~g--~--~~~yd~lv  129 (706)
                         ..+...            ....++...+.++.. .+++  + ...+|++|++..+  .|.+.++  .  +..||+||
T Consensus        87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEE
Confidence               000000            000111111222222 3444  2 2478999988655  3544432  1  45799999


Q ss_pred             Eccc--cccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHH
Q psy8791         130 VASG--IQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRN  207 (706)
Q Consensus       130 iAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~  207 (706)
                      +|||  +.|+.|.+||.+                    .|+++.+|+..                     ...       
T Consensus       167 vAtG~~~~P~~P~ipG~~--------------------~f~G~~iHs~~---------------------yr~-------  198 (461)
T PLN02172        167 VCNGHYTEPNVAHIPGIK--------------------SWPGKQIHSHN---------------------YRV-------  198 (461)
T ss_pred             EeccCCCCCcCCCCCCcc--------------------cCCceEEEecc---------------------cCC-------
Confidence            9999  678888899932                    23333333211                     000       


Q ss_pred             HHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCC
Q psy8791         208 LQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGK  287 (706)
Q Consensus       208 l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~  287 (706)
                      ...+.+.+++|        +|++ .....++. .+...+.    +|+++++......        .+.+......+..+.
T Consensus       199 ~~~~~gk~VvV--------VG~G-~Sg~diA~-~L~~~a~----~V~l~~r~~~~~~--------~~~~~~~~~~v~~~~  256 (461)
T PLN02172        199 PDPFKNEVVVV--------IGNF-ASGADISR-DIAKVAK----EVHIASRASESDT--------YEKLPVPQNNLWMHS  256 (461)
T ss_pred             ccccCCCEEEE--------ECCC-cCHHHHHH-HHHHhCC----eEEEEEeeccccc--------cccCcCCCCceEECC
Confidence            01133333322        2222 12223333 2333332    4888887543211        011112234455566


Q ss_pred             ceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCceeeCc--------cccccCC-CCCEEEc
Q psy8791         288 ALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVNVDK--------ATLQHVK-YSNVFAI  357 (706)
Q Consensus       288 ~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~vd~--------~~l~~~~-~~~Ifa~  357 (706)
                      .|..+..+ +.|++.   ||+++++|.||+|||++++ +++.+.      |.+.+|+        +.+ .+. .|++..+
T Consensus       257 ~I~~~~~~-g~V~f~---DG~~~~~D~Ii~~TGy~~~~pfL~~~------~~i~v~~~~v~~Ly~~~f-~~~~~p~Lafi  325 (461)
T PLN02172        257 EIDTAHED-GSIVFK---NGKVVYADTIVHCTGYKYHFPFLETN------GYMRIDENRVEPLYKHVF-PPALAPGLSFI  325 (461)
T ss_pred             cccceecC-CeEEEC---CCCCccCCEEEECCcCCccccccCcc------cceeeCCCcchhhHHhhc-CCCCCCcEEEE
Confidence            67766544 346554   7889999999999999999 565543      3333332        122 233 4899999


Q ss_pred             cccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         358 GDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       358 GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      |=....   .....+..||+.+|+-+
T Consensus       326 G~~~~~---~~f~~~E~Qa~~~a~v~  348 (461)
T PLN02172        326 GLPAMG---IQFVMFEIQSKWVAAVL  348 (461)
T ss_pred             eccccc---cCchhHHHHHHHHHHHH
Confidence            933211   23346678888888766

>KOG0399|consensus

Probab=99.64  E-value=3.9e-16  Score=171.63  Aligned_cols=322  Identities=14%  Similarity=0.153  Sum_probs=175.1

Q ss_pred             cccccccccccccccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccc
Q psy8791           7 CPLKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDS   86 (706)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~   86 (706)
                      |++++++++..|+.+.++... ..++|.|||.|+|||+||-+|.+.  |+.|||+||.++.... +...++....+...+
T Consensus      1763 ~aiid~af~egwm~p~pp~~r-tg~~vaiigsgpaglaaadqlnk~--gh~v~vyer~dr~ggl-l~ygipnmkldk~vv 1838 (2142)
T KOG0399|consen 1763 CAIIDKAFEEGWMKPCPPAFR-TGKRVAIIGSGPAGLAAADQLNKA--GHTVTVYERSDRVGGL-LMYGIPNMKLDKFVV 1838 (2142)
T ss_pred             hHHHHHHHHhcCCccCCcccc-cCcEEEEEccCchhhhHHHHHhhc--CcEEEEEEecCCcCce-eeecCCccchhHHHH
Confidence            788999999999988877533 347999999999999999999999  9999999999973221 112233322222223


Q ss_pred             ccccccccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCCCcccccccccccccccccccCc
Q psy8791          87 RRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVRSFVTFPL  165 (706)
Q Consensus        87 ~~~~~~~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  165 (706)
                      .+...-+...+|+|+...-    . .+.|.++ +-.-.+|.+|+|+|++ ++..++||-+    +-|.|           
T Consensus      1839 ~rrv~ll~~egi~f~tn~e----i-gk~vs~d-~l~~~~daiv~a~gst~prdlpv~grd----~kgv~----------- 1897 (2142)
T KOG0399|consen 1839 QRRVDLLEQEGIRFVTNTE----I-GKHVSLD-ELKKENDAIVLATGSTTPRDLPVPGRD----LKGVH----------- 1897 (2142)
T ss_pred             HHHHHHHHhhCceEEeecc----c-cccccHH-HHhhccCeEEEEeCCCCCcCCCCCCcc----ccccH-----------
Confidence            3334444458999976321    1 1223322 2234689999999984 7778889832    11111           


Q ss_pred             cCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCE-EEecCCCCeeeCChhHHHHHHHHHHHHH
Q psy8791         166 FFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPV-LYTFPATPIKCGGAPMKAVLIGDEYLRK  244 (706)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~-vv~~~~~~v~~~g~~~~~~~~~~~~l~~  244 (706)
                       |..+.+|.-     -+..++.    ..          -+..+ ..++.++ |++.|..+-.|.|...           +
T Consensus      1898 -fame~l~~n-----tk~lld~----~~----------d~~~~-~~~gkkvivigggdtg~dcigtsv-----------r 1945 (2142)
T KOG0399|consen 1898 -FAMEFLEKN-----TKSLLDS----VL----------DGNYI-SAKGKKVIVIGGGDTGTDCIGTSV-----------R 1945 (2142)
T ss_pred             -HHHHHHHHh-----HHhhhcc----cc----------cccee-ccCCCeEEEECCCCccccccccch-----------h
Confidence             111111100     0000000    00          00001 1122222 3444555555555421           1


Q ss_pred             cCCCCCcEEEEEe-CC-Cc----CCC--chh-----HHHHHHHHHHhCCceEEc------------CCceE-----EEe-
Q psy8791         245 HKKRDAAKLTYCT-GM-GV----LFP--SPF-----YAEKIHDILIGRGVDVHK------------GKALV-----EID-  293 (706)
Q Consensus       245 ~g~~~~~~v~l~~-~~-~~----~~~--~~~-----~~~~~~~~l~~~gV~v~~------------~~~v~-----~i~-  293 (706)
                      +|-..-....++. +. .+    +.|  |..     -...+++   ..|-+.++            +..|+     +|+ 
T Consensus      1946 hg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~---~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew 2022 (2142)
T KOG0399|consen 1946 HGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEW 2022 (2142)
T ss_pred             hccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH---HhCCCcceeeeeeeeeeccCCCceeeEEEEEEEE
Confidence            2211111111111 00 00    111  000     0111111   11211111            11222     221 


Q ss_pred             -C-CCCE-EEEEeCCCceEEeecEEEECCCCCch--hhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCc
Q psy8791         294 -L-ANKE-AVFKSEDKTERLPYAIMHVTPPMGPV--PELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK  367 (706)
Q Consensus       294 -~-~~~~-v~~~~~~~g~~i~~D~vI~a~G~~~~--~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~  367 (706)
                       . +.+. ...+..++.+.++||+||++.|+..+  ...++.++ .+.++.|.+-...+ .++.+.|||+|||-....  
T Consensus      2023 ~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y-~t~v~~vfaagdcrrgqs-- 2099 (2142)
T KOG0399|consen 2023 EKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSY-STDVAKVFAAGDCRRGQS-- 2099 (2142)
T ss_pred             EecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccc-cccccceeecccccCCce--
Confidence             1 1111 22222235578999999999999988  34455677 77788787644233 488999999999998855  


Q ss_pred             hHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         368 TAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       368 ~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      +...|+++|+.+|+.+...+.|+.
T Consensus      2100 lvvwai~egrq~a~~vd~~~~~~t 2123 (2142)
T KOG0399|consen 2100 LVVWAIQEGRQAARQVDELMGGTT 2123 (2142)
T ss_pred             EEEEEehhhhHHHHHHHHHhCCcc
Confidence            556789999999999988665553

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.64  E-value=1.2e-16  Score=171.33  Aligned_cols=189  Identities=17%  Similarity=0.185  Sum_probs=124.1

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +.+||+||||+|+||..+|.++.+.  +.++++||+.+.          .||.| ++..|+|+|.|+.++..+.......
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~--G~kvalvE~~~~----------lGGtC-ln~GCIPsK~Ll~~a~~~~~~~~~~   68 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL--GLKVALVEKGER----------LGGTC-LNVGCIPSKALLHAAEVIEEARHAA   68 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC--CCCEEEEeecCC----------cCceE-EeeCccccHHHHHHHHHHHHHhhcc
Confidence            4579999999999999999999998  555999998642          13332 4566678999988875543332221


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCC--Cc
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQA--GS  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~--g~  620 (706)
                      ...++...        .+      ...|..+..... ..+.+...+..+++ ++|+++.+++.++|+.  +|.+.+  .+
T Consensus        69 ~~~Gi~~~--------~~------~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~--~v~V~~~~~~  132 (454)
T COG1249          69 KEYGISAE--------VP------KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH--TVEVTGEDKE  132 (454)
T ss_pred             cccceecC--------CC------CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCC--EEEEcCCCce
Confidence            11111110        00      000111111111 11222333445555 5999999999999954  555544  47


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhhh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKRK  690 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~~  690 (706)
                      ++++|++||||||+|..|++||++..        .+.++.........|++++||     |+|+|+.++++..++
T Consensus       133 ~~~a~~iiIATGS~p~~~~~~~~~~~--------~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~V  199 (454)
T COG1249         133 TITADNIIIATGSRPRIPPGPGIDGA--------RILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKV  199 (454)
T ss_pred             EEEeCEEEEcCCCCCcCCCCCCCCCC--------eEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            89999999999999999999998732        133333333333689999999     999999999988653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.62  E-value=8.7e-16  Score=178.30  Aligned_cols=158  Identities=13%  Similarity=0.203  Sum_probs=111.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhc--CCCcEEEECCCCCCcCCcceE-EeeccccccccccccccccCCCCccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL--GKGQVSIVEPTDDHYYQPMFT-LIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~--~~~~i~vid~~~~~~~~~~~~-~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      +++|||||+|+||+.+|.+|+++.  ++.+|+||++++++.|.+... ...++                           
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~---------------------------   55 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH---------------------------   55 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC---------------------------
Confidence            348999999999999999998763  357999999999887766321 11000                           


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEec-eEEEEEcCCCeEEcCCCcE
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD-KIVSFDPENNRVRTQAGSE  621 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~-~v~~id~~~~~V~~~~g~~  621 (706)
                                                          ...+++......++ ..||+++.+ +|+.||++.+.|++.+|++
T Consensus        56 ------------------------------------~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~   99 (847)
T PRK14989         56 ------------------------------------HTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRT   99 (847)
T ss_pred             ------------------------------------CCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcE
Confidence                                                01112222222222 368999765 6999999999999999999


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ++||+|||||||+|+.|++||.+  ...+..++...+..........+++++||     |+|+|..|+++..+
T Consensus       100 i~yD~LVIATGs~p~~p~ipG~~--~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~  170 (847)
T PRK14989        100 VFYDKLIMATGSYPWIPPIKGSE--TQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVE  170 (847)
T ss_pred             EECCEEEECCCCCcCCCCCCCCC--CCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence            99999999999999999999976  22222233322222222333467889999     99999999887543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.62  E-value=8.9e-16  Score=165.17  Aligned_cols=153  Identities=11%  Similarity=0.175  Sum_probs=105.2

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCc-ceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~-~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++|||||||+||+++|+.+++..++.+|+||++++++.|+. .++..                                 
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~---------------------------------   49 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHV---------------------------------   49 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHH---------------------------------
Confidence            48999999999999999999988889999999988766532 21111                                 


Q ss_pred             CCceEEEeeecceecCCCcccccCccccccccccccccccc-chhhhcc-CCcEEE-eceEEEEEcCCCeEEcCCCcEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR-PMKSVLP-SGATWV-KDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~gv~~~-~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                   ..+....+++.. ...++.+ .|++++ +++|++||+++++|.+ +++++.
T Consensus        50 -----------------------------~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~   99 (377)
T PRK04965         50 -----------------------------FSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQ   99 (377)
T ss_pred             -----------------------------HhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CCeEEe
Confidence                                         011111122221 2233332 589986 5689999999888886 566899


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      ||+||||||++|..|++||.+.    +..++...+..........+++++||     |+|+|..|.+..
T Consensus       100 yd~LVlATG~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g  164 (377)
T PRK04965        100 YDKLVLATGASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAG  164 (377)
T ss_pred             CCEEEECCCCCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcC
Confidence            9999999999999999999753    22222222211122222356789999     899999887654

>KOG2495|consensus

Probab=99.62  E-value=6.5e-16  Score=156.38  Aligned_cols=177  Identities=19%  Similarity=0.344  Sum_probs=128.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.++|||+|+|.+|+++++.|-..  .++|+||++.+++.|.|+++.+..|+..+..+..|++.+.+.            
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts--~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~------------  119 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTS--LYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARK------------  119 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhcccc--ccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhc------------
Confidence            467899999999999999999766  689999999999999999988777775555544443221111            


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEeceEEEEEcCCCeEEcC----CC--
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ----AG--  619 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~----~g--  619 (706)
                                                                     ...++.+++.+...||+++++|++.    ++  
T Consensus       120 -----------------------------------------------k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~  152 (491)
T KOG2495|consen  120 -----------------------------------------------KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSD  152 (491)
T ss_pred             -----------------------------------------------cCCCceEEecccEeecccccEEEEeeeccCCCc
Confidence                                                           1126788999999999999988663    34  


Q ss_pred             --cEEeeCEEEEecCcccCccCCCCchhh------hcccccccc-cccCccchhhh----ccCc---cEEEE-----cHH
Q psy8791         620 --SEISYEYMIVASGIQMYYDRVKGGTTS------LEDRGKMRG-VSDGFSTVTWE----QKHK---QYQLV-----SPE  678 (706)
Q Consensus       620 --~~i~yd~lViAtGs~~~~p~i~G~~~~------~~~~~~~~~-~~~~~~~~~~~----~~~k---~vvVi-----G~E  678 (706)
                        -.+.|||||+|+|+.++.+.|||..+.      .+++..++. +.++++.....    .+.+   ++|||     |+|
T Consensus       153 ~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVE  232 (491)
T KOG2495|consen  153 KEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVE  232 (491)
T ss_pred             ceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCccee
Confidence              368999999999999999999997631      223333322 12222222211    1112   37788     999


Q ss_pred             HHHHHHHHHhhhhhhhccccccccc
Q psy8791         679 IRAKAYDLTKRKMKKEAQWIRFQEK  703 (706)
Q Consensus       679 ~A~~l~~~~~~~~~~~~~~~~~~~~  703 (706)
                      +|++|+++..+..++-||.+...-+
T Consensus       233 FAaEL~Dfi~~Dl~k~yp~l~~~i~  257 (491)
T KOG2495|consen  233 FAAELADFIPEDLRKIYPELKKDIK  257 (491)
T ss_pred             ehHHHHHHHHHHHHHhhhcchhheE
Confidence            9999999999999999988765544

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.61  E-value=1.2e-15  Score=166.99  Aligned_cols=156  Identities=16%  Similarity=0.152  Sum_probs=102.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCc-ceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~-~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |++|||||||+||+++|.+|+++.++.+|+|||+++++.|.+ .++.+.++...                          
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~--------------------------   54 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVE--------------------------   54 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccC--------------------------
Confidence            568999999999999999999887789999999999887765 33322222110                          


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccc-cccchhhhcc-CCcEE-EeceEEEEEcCCCeEEcCCC---
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSD-SRRPMKSVLP-SGATW-VKDKIVSFDPENNRVRTQAG---  619 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~gv~~-~~~~v~~id~~~~~V~~~~g---  619 (706)
                                                         ..++ +......+.+ .|+++ +.++|+.||+++++|.+.++   
T Consensus        55 -----------------------------------~~~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~   99 (438)
T PRK13512         55 -----------------------------------DRKYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTN   99 (438)
T ss_pred             -----------------------------------CHHHcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCC
Confidence                                               0000 0111122222 58888 56899999999999987653   


Q ss_pred             c--EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchh--hhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         620 S--EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVT--WEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       620 ~--~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +  +++||+||||||++|+.|++++..     +..++...+......  ....+++++||     |+|+|..|+++..
T Consensus       100 ~~~~~~yd~lviAtGs~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~  172 (438)
T PRK13512        100 EQFEESYDKLILSPGASANSLGFESDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGL  172 (438)
T ss_pred             cEEeeecCEEEECCCCCCCCCCCCCCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            2  479999999999999877665311     111122211111111  12246899999     9999998877653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.61  E-value=1.2e-15  Score=177.54  Aligned_cols=156  Identities=20%  Similarity=0.254  Sum_probs=110.4

Q ss_pred             ccccCcchhHHHHHHHHHhhc-CCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         470 LGVVGGGAAGCSMAAKFTSRL-GKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       470 ivIIGaG~aG~~~a~~l~~~~-~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      |||||+|+||+++|.+|++.. ++.+|+||++++++.|.+. ++.+.                                 
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l---------------------------------   47 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVL---------------------------------   47 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHH---------------------------------
Confidence            689999999999999999875 4579999999988776543 11111                                 


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEec-eEEEEEcCCCeEEcCCCcEEeeC
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD-KIVSFDPENNRVRTQAGSEISYE  625 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~yd  625 (706)
                                                   .+....+++.....+++ +.||+++.+ +|+.||+++++|++.+|++++||
T Consensus        48 -----------------------------~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD   98 (785)
T TIGR02374        48 -----------------------------QGEADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYD   98 (785)
T ss_pred             -----------------------------CCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCC
Confidence                                         11112222223333333 368999754 89999999999999999999999


Q ss_pred             EEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         626 YMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       626 ~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +||||||++|+.|++||.+  ...+..++...+...........++++||     |+|+|..|+++..+
T Consensus        99 ~LVlATGs~p~~p~ipG~~--~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~  165 (785)
T TIGR02374        99 KLILATGSYPFILPIPGAD--KKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD  165 (785)
T ss_pred             EEEECCCCCcCCCCCCCCC--CCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe
Confidence            9999999999999999976  23333333322222222233456889999     99999999877643

>PRK14694 putative mercuric reductase; Provisional

Probab=99.61  E-value=7.3e-16  Score=170.34  Aligned_cols=189  Identities=16%  Similarity=0.187  Sum_probs=117.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      .+.+||+|||||+||+++|..|++.  +.+|+|||++.           .||.|. +..|.|.|.++.+...........
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~--g~~v~lie~~~-----------~GGtc~-n~GciPsk~l~~~a~~~~~~~~~~   69 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATER--GARVTLIERGT-----------IGGTCV-NIGCVPSKIMIRAAHIAHLRRESP   69 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEEccc-----------ccccee-cCCccccHHHHHHHHHHHHHhhcc
Confidence            3578999999999999999999998  78999999843           144443 455578877766543221111000


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccccc-cccccc-chhhhcc--CCcEEEeceEEEEEcCCCeEEcCCCc
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKK-LSDSRR-PMKSVLP--SGATWVKDKIVSFDPENNRVRTQAGS  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~--~gv~~~~~~v~~id~~~~~V~~~~g~  620 (706)
                      +.  ..+         ...   .....|..+...... .+.+.. .+...+.  .+++++.++|+++|++.++|++.+|+
T Consensus        70 ~~--~g~---------~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~  135 (468)
T PRK14694         70 FD--DGL---------SAQ---APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGG  135 (468)
T ss_pred             cc--CCc---------ccC---CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCC
Confidence            00  000         000   000011111100000 011111 1223332  38999999999999998889888773


Q ss_pred             --EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 --EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 --~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                        +++||+||||||++|..|++||+++.        .+++..........+++++||     |+|+|..|+++..+
T Consensus       136 ~~~~~~d~lViATGs~p~~p~i~G~~~~--------~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~  203 (468)
T PRK14694        136 EQTVHFDRAFIGTGARPAEPPVPGLAET--------PYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSR  203 (468)
T ss_pred             eEEEECCEEEEeCCCCCCCCCCCCCCCC--------ceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence              79999999999999999999997631        111111222233457899999     89999998877644

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.58  E-value=1.4e-15  Score=167.91  Aligned_cols=188  Identities=15%  Similarity=0.112  Sum_probs=111.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +.+|||+|||||+||+.+|.++++.  +.+|+|||+++.+          ||.| ++..|.|.|.|+.....+...... 
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~~----------GG~c-~n~gciP~K~l~~~a~~~~~~~~~-   67 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADL--GLETVCVERYSTL----------GGVC-LNVGCIPSKALLHVAKVIEEAKAL-   67 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCcc----------cccc-cCCCcccHHHHHHHHHHHHHHhhh-
Confidence            4579999999999999999999998  8999999985422          4444 556667888777654322211100 


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--c
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--S  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~  620 (706)
                        ..+.+         ....   ....+..+.... ...+++...+...++ .||+++.+++.++|++...|...+|  .
T Consensus        68 --~~~g~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~  133 (471)
T PRK06467         68 --AEHGI---------VFGE---PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTT  133 (471)
T ss_pred             --hhcCc---------ccCC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceE
Confidence              00000         0000   000000000000 001112222233333 6999999999998876545655566  4


Q ss_pred             EEeeCEEEEecCcccCc-cCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 EISYEYMIVASGIQMYY-DRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~-p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ++.||+||||||++|.. |.+++..+.         ..+..........+++++||     |+|+|..++++..+
T Consensus       134 ~~~~d~lViATGs~p~~~p~~~~~~~~---------v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~  199 (471)
T PRK06467        134 VIEFDNAIIAAGSRPIQLPFIPHDDPR---------IWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSE  199 (471)
T ss_pred             EEEcCEEEEeCCCCCCCCCCCCCCCCc---------EEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCC
Confidence            79999999999999974 445553211         11111222233457899999     99999999876644

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.58  E-value=2.3e-15  Score=165.39  Aligned_cols=172  Identities=16%  Similarity=0.223  Sum_probs=109.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.|||||||||+||++||..|+++  +.+|+|||+++...         ||.|. +..|.|.|.++.....         
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~--g~~V~lie~~~~~~---------GG~~~-~~gcip~k~l~~~~~~---------   60 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA--GWRVALIEQSNAMY---------GGTCI-NIGCIPTKTLVHDAQQ---------   60 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC--CCeEEEEcCCCCcc---------ceeEe-eccccchHHHHHHhcc---------
Confidence            458999999999999999999998  78999999865321         34332 3334555554443210         


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccc-ccccc-chhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc-E
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKL-SDSRR-PMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS-E  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~-~  621 (706)
                                       .      ..+.......... +.+.. ....+.+ .+++++.++++++|++...|.+.++. +
T Consensus        61 -----------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~  117 (441)
T PRK08010         61 -----------------H------TDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLE  117 (441)
T ss_pred             -----------------C------CCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEE
Confidence                             0      0000000000000 00000 1122223 48999999999999876677777775 7


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++|..|++||+++. ..      ..+..........+++++||     |+|+|..|+++..
T Consensus       118 ~~~d~lviATGs~p~~p~i~G~~~~-~~------v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~  182 (441)
T PRK08010        118 IHGEKIFINTGAQTVVPPIPGITTT-PG------VYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGS  182 (441)
T ss_pred             EEeCEEEEcCCCcCCCCCCCCccCC-CC------EEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            9999999999999999999997532 11      11122222233467899999     9999999887653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.57  E-value=5.8e-15  Score=162.68  Aligned_cols=157  Identities=22%  Similarity=0.325  Sum_probs=104.5

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      +|||||||+||+++|..|++..++.+|+|||+++++.|.+. ++...++..                             
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~-----------------------------   52 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFF-----------------------------   52 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEecccc-----------------------------
Confidence            79999999999999999999866789999999988776542 111111100                             


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccc-cchhhhccCCcEEE-eceEEEEEcCCCeEEcCC---CcEE
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSR-RPMKSVLPSGATWV-KDKIVSFDPENNRVRTQA---GSEI  622 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~-~~~v~~id~~~~~V~~~~---g~~i  622 (706)
                                                      ...+++. .....+.+.|++++ +++|++||+++++|.+.+   ++++
T Consensus        53 --------------------------------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~  100 (444)
T PRK09564         53 --------------------------------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIF  100 (444)
T ss_pred             --------------------------------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEE
Confidence                                            0001111 12222333689984 679999999999887754   5667


Q ss_pred             e--eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhh--hccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 S--YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTW--EQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~--yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .  ||+||||||++|..|++||++  .+.+..++...+.......  ...+++|+||     |+|+|..+.++..
T Consensus       101 ~~~yd~lviAtG~~~~~~~i~g~~--~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~  173 (444)
T PRK09564        101 NDTYDKLMIATGARPIIPPIKNIN--LENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGK  173 (444)
T ss_pred             EecCCEEEECCCCCCCCCCCCCcC--CCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            6  999999999999999999975  2222222222111111111  1246889999     8999998876554

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.57  E-value=2.5e-13  Score=139.39  Aligned_cols=136  Identities=16%  Similarity=0.174  Sum_probs=91.7

Q ss_pred             CCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCC-CC--EEEEEeCCCc--eEEeecEEEECCCCCc
Q psy8791         249 DAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLA-NK--EAVFKSEDKT--ERLPYAIMHVTPPMGP  323 (706)
Q Consensus       249 ~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~--~v~~~~~~~g--~~i~~D~vI~a~G~~~  323 (706)
                      ++.+++++...-+.++ ....+++.+.-.+.||+++.|. +.+|... ++  .|..+.+-.|  .++++|+||+++|..|
T Consensus       399 Pd~~v~I~YmDiRafG-~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep  476 (622)
T COG1148         399 PDTDVTIYYMDIRAFG-KDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEP  476 (622)
T ss_pred             CCcceeEEEEEeeccC-ccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCeeEEEEEeccCccceecccceEEEeecccc
Confidence            4456777766666664 3445555555568999999984 4444432 22  3444444344  4789999999999998


Q ss_pred             hhh---h-hcCCC-CCCCCceeeCcccccc--CCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         324 VPE---L-ATSRL-VDQSGYVNVDKATLQH--VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       324 ~~~---~-~~~~l-~~~~G~i~vd~~~l~~--~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      .+-   + ..+|| .+++||+...+..++.  +..++||.+|=|..   |+....++.||..+|....+.+..
T Consensus       477 ~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg---PkdI~~siaqa~aAA~kA~~~l~~  546 (622)
T COG1148         477 SEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG---PKDIADSIAQAKAAAAKAAQLLGR  546 (622)
T ss_pred             CcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC---CccHHHHHHHhHHHHHHHHHHhhc
Confidence            632   3 33688 8889999877433442  35689999994333   678888899998888777776653

>PLN02507 glutathione reductase

Probab=99.56  E-value=2.7e-15  Score=166.21  Aligned_cols=194  Identities=13%  Similarity=0.111  Sum_probs=116.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc-ccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI-VSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~  545 (706)
                      .||++|||||+||+.+|.++.+.  +.+|+|||++....-... ..-.||+| ++..|+|.|.|+..+........ ..+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~--G~~V~liE~~~~~~~~~~-~~~~GGtc-~n~GciPsK~l~~~a~~~~~~~~~~~~  100 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSES-IGGVGGTC-VIRGCVPKKILVYGATFGGEFEDAKNY  100 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCccccccc-CCCcccee-eccCchhHHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999998  899999996210000000 00124444 34556788888766533221110 000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc--E
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS--E  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~--~  621 (706)
                      +  +.+         ...    ....+..+... ....+.+...+..++. .+|+++.+++.++|++..+|.+.+|+  +
T Consensus       101 G--~~~---------~~~----~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~  165 (499)
T PLN02507        101 G--WEI---------NEK----VDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLR  165 (499)
T ss_pred             C--ccc---------CCC----CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEE
Confidence            0  000         000    00000000000 0011112222333333 69999999999999988888887876  5


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +.||+||||||++|..|++||.+...          +......+...+++++||     |+|+|..++++..+
T Consensus       166 ~~~d~LIIATGs~p~~p~ipG~~~~~----------~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~  228 (499)
T PLN02507        166 YTAKHILIATGSRAQRPNIPGKELAI----------TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGAT  228 (499)
T ss_pred             EEcCEEEEecCCCCCCCCCCCcccee----------chHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence            88999999999999999999964211          111122223457899999     99999988776543

>KOG2755|consensus

Probab=99.56  E-value=1.6e-14  Score=136.76  Aligned_cols=106  Identities=21%  Similarity=0.363  Sum_probs=69.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEEEcC
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPE  111 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~id~~  111 (706)
                      +.+|||||.||.+||.+|+.+.|..+|+||...+..-....+..+..-....+.-......+.+.--+|+.. |..++..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~~s~   79 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTWDSS   79 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhhccc
Confidence            368999999999999999999889999999988752111111000000000000000111122211134444 7888888


Q ss_pred             CCEEEeCCCeEEEecEEEEcccccccc
Q psy8791         112 NNRVRTQAGSEISYEYMIVASGIQMYY  138 (706)
Q Consensus       112 ~~~v~~~~g~~~~yd~lviAtG~~~~~  138 (706)
                      ++.+.+.+|.++.|++|++|+|.+|..
T Consensus        80 ehci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   80 EHCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             cceEEecCCceeeEEEEEEecCCCcce
Confidence            999999999999999999999999874

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.55  E-value=3.9e-14  Score=156.52  Aligned_cols=316  Identities=13%  Similarity=0.119  Sum_probs=142.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC------------cccc--------------ccc--Cc---
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ------------PMFT--------------LIG--GG---   79 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~------------p~~~--------------~~~--~~---   79 (706)
                      ++|+|||||++||++|+.|.+.  |++++++|+++.....            +.+.              ..+  .+   
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~   79 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD   79 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence            6899999999999999999998  9999999998862110            0000              000  00   


Q ss_pred             cccCcccccccccccC-CCc-EEE--EceeEEEEcCC-------CEEEeCC-Ce--EEEecEEEEcccc--ccccCC--C
Q psy8791          80 MKKLSDSRRPMKSVLP-SGA-TWV--KDKIVSFDPEN-------NRVRTQA-GS--EISYEYMIVASGI--QMYYDR--V  141 (706)
Q Consensus        80 ~~~~~~~~~~~~~~~~-~~v-~~i--~~~v~~id~~~-------~~v~~~~-g~--~~~yd~lviAtG~--~~~~~~--~  141 (706)
                      ..+.+++...++.+.+ .+. +++  .++|++++...       ..|++++ |+  +-.||+||+|||-  .|+.|.  +
T Consensus        80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~  159 (531)
T PF00743_consen   80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF  159 (531)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred             CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence            0000111112222222 122 233  36777776422       2455543 42  4569999999994  566664  7


Q ss_pred             CCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecC
Q psy8791         142 KGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFP  221 (706)
Q Consensus       142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~  221 (706)
                      ||.                    +.|.++.+|+.+    +.+.....+|+|..+....++.++...+.... ..+.+...
T Consensus       160 ~G~--------------------e~F~G~i~HS~~----yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a-~~v~~s~R  214 (531)
T PF00743_consen  160 PGL--------------------EKFKGEIIHSKD----YRDPEPFKGKRVLVVGGGNSGADIAVELSRVA-KKVYLSTR  214 (531)
T ss_dssp             CTG--------------------GGHCSEEEEGGG------TGGGGTTSEEEEESSSHHHHHHHHHHTTTS-CCEEEECC
T ss_pred             hhh--------------------hcCCeeEEcccc----CcChhhcCCCEEEEEeCCHhHHHHHHHHHHhc-CCeEEEEe
Confidence            883                    357889999876    55556666779999999888888888887653 33333322


Q ss_pred             CCCeee-----CChhHHHHHHHH------HHHHH----cCCCCCcEEEE------EeCCCcCCC-chhHHHHHHHHHHhC
Q psy8791         222 ATPIKC-----GGAPMKAVLIGD------EYLRK----HKKRDAAKLTY------CTGMGVLFP-SPFYAEKIHDILIGR  279 (706)
Q Consensus       222 ~~~v~~-----~g~~~~~~~~~~------~~l~~----~g~~~~~~v~l------~~~~~~~~~-~~~~~~~~~~~l~~~  279 (706)
                      .....+     .|-|.+.....+      ..+..    .-......-.+      +.+....+. .+.+.+.+-..+...
T Consensus       215 ~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G  294 (531)
T PF00743_consen  215 RGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSG  294 (531)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            211111     122322211100      00000    00000000000      011111111 244556666677777


Q ss_pred             CceEEcCCceEEEeCCCCEEEEEeCCCceEE-eecEEEECCCCCch-hhhhcCCCCCCCCceeeCccccccC--CCCCEE
Q psy8791         280 GVDVHKGKALVEIDLANKEAVFKSEDKTERL-PYAIMHVTPPMGPV-PELATSRLVDQSGYVNVDKATLQHV--KYSNVF  355 (706)
Q Consensus       280 gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i-~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~vd~~~l~~~--~~~~If  355 (706)
                      .|.+..  .|.+++++  .+.++   ||+++ ++|.||+|||++.. +++.+.-+...++.+..-.+.+ .+  .+|++.
T Consensus       295 ~i~vk~--~I~~~~~~--~v~F~---DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vf-p~~~~~ptLa  366 (531)
T PF00743_consen  295 RIKVKP--DIKRFTEN--SVIFE---DGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVF-PPNLDHPTLA  366 (531)
T ss_dssp             ----EE---EEEE-SS--EEEET---TSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTE-ETETTSTTEE
T ss_pred             cccccc--cccccccc--ccccc---ccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            777764  48888764  37664   78775 79999999999988 7776653333333333322222 12  458999


Q ss_pred             EccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         356 AIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       356 a~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      .+|=+-..  ......+..||+.+|+-+
T Consensus       367 fIG~~~~~--g~~fp~~ElQArw~a~v~  392 (531)
T PF00743_consen  367 FIGLVQPF--GSIFPIFELQARWAARVF  392 (531)
T ss_dssp             ESS-SBSS--S-HHHHHHHHHHHHHHHH
T ss_pred             cccccccc--cccccccccccccccccc
Confidence            99943221  123345788888888766

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.55  E-value=3.6e-15  Score=163.83  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=110.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc-ccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI-VSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~  545 (706)
                      .|||+|||||+||++||.+++++  +.+|+|||++.           .||.|. +..|.|.|.|+.+...+..... ..+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~-----------~GG~c~-~~gciPsk~l~~~a~~~~~~~~~~~~   67 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH--GAKVAIAEEPR-----------VGGTCV-IRGCVPKKLMVYGSTFGGEFEDAAGY   67 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCc-----------cCceee-cCCcCchHHHHHHHHHHHHHhhhHhc
Confidence            47999999999999999999998  89999999732           244443 4556788777666533221110 000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      .  +..         +.     ....|..+... ....+.+...+...++ .||+++.+++..+|++...|. .+|+++.
T Consensus        68 g--~~~---------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g~~~~  130 (446)
T TIGR01424        68 G--WTV---------GK-----ARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDGTTYT  130 (446)
T ss_pred             C--cCC---------CC-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCCeEEE
Confidence            0  000         00     00000000000 0011112222333333 699999999999998744443 4677899


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|++||.+...          +..........+++++||     |+|+|..++++..
T Consensus       131 ~d~lIiATGs~p~~p~i~G~~~~~----------~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~  190 (446)
T TIGR01424       131 AKKILIAVGGRPQKPNLPGHELGI----------TSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGV  190 (446)
T ss_pred             cCEEEEecCCcCCCCCCCCcccee----------chHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCC
Confidence            999999999999999999965211          111111222357899999     8999988876643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.55  E-value=6.9e-15  Score=161.49  Aligned_cols=170  Identities=21%  Similarity=0.216  Sum_probs=105.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.|||||||||+||++||..++++  +.+|+|||+++...         ||+|. +..|.|.|.++......        
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~--g~~V~liE~~~~~~---------GG~c~-~~gciP~k~~~~~~~~~--------   61 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASA--GKKVALVEESKAMY---------GGTCI-NIGCIPTKTLLVAAEKN--------   61 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecCCccc---------ceeee-cCccccchHhhhhhhcC--------
Confidence            468999999999999999999997  78999999875421         44432 23345665555433100        


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccc-cccccccch-hhhccCCcEEEeceEEEEEcCCCeEEcCC---Cc
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPM-KSVLPSGATWVKDKIVSFDPENNRVRTQA---GS  620 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~gv~~~~~~v~~id~~~~~V~~~~---g~  620 (706)
                                              ..+..+..... -...+.... ..+.+.+|+++.+++.+++.  ++|.+.+   ..
T Consensus        62 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~--~~v~v~~~~~~~  115 (438)
T PRK07251         62 ------------------------LSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSN--KVIEVQAGDEKI  115 (438)
T ss_pred             ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEeeCCCcE
Confidence                                    00000000000 001111111 22233699999999888754  4565533   24


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ++.||+||||||++|+.|++||.++. .      ...++.........+++|+||     |+|+|..++++..
T Consensus       116 ~~~~d~vViATGs~~~~p~i~G~~~~-~------~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~  181 (438)
T PRK07251        116 ELTAETIVINTGAVSNVLPIPGLADS-K------HVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGS  181 (438)
T ss_pred             EEEcCEEEEeCCCCCCCCCCCCcCCC-C------cEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            79999999999999999999997521 1      122222222333467899999     9999999877653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.54  E-value=1.2e-13  Score=156.93  Aligned_cols=110  Identities=15%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC--------------CcccCcccccc----cCccccCcccc--
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD--------------DHYYQPMFTLI----GGGMKKLSDSR--   87 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~--------------~~~~~p~~~~~----~~~~~~~~~~~--   87 (706)
                      ...++|+|||||||||+||++|+++  |++|||+|+.+              ++.|.|.+...    .+|.....-..  
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~--Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~  458 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRS--GHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW  458 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhC--CCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc
Confidence            4568999999999999999999998  99999999853              23344443321    11222111110  


Q ss_pred             -----cccccccCC--CcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEcccc-ccccCCCCCC
Q psy8791          88 -----RPMKSVLPS--GATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGI-QMYYDRVKGP  144 (706)
Q Consensus        88 -----~~~~~~~~~--~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~-~~~~~~~~g~  144 (706)
                           .....++..  ++++..+...+.|     ++.++-....||++++|||+ .+..+++||.
T Consensus       459 ~k~~l~~i~~il~~g~~v~~~~gv~lG~d-----it~edl~~~gyDAV~IATGA~kpr~L~IPGe  518 (1028)
T PRK06567        459 DKNNLDILRLILERNNNFKYYDGVALDFN-----ITKEQAFDLGFDHIAFCIGAGQPKVLDIENF  518 (1028)
T ss_pred             hHHHHHHHHHHHhcCCceEEECCeEECcc-----CCHHHHhhcCCCEEEEeCCCCCCCCCCCCCc
Confidence                 011122222  3444444332222     22222224579999999999 6888999993

>PRK06116 glutathione reductase; Validated

Probab=99.54  E-value=4.1e-15  Score=163.89  Aligned_cols=182  Identities=14%  Similarity=0.163  Sum_probs=108.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..|||+|||||+||++||..++++  +.+|+|||++.           .||.| ++..|.|.|.|+..............
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~--G~~V~liE~~~-----------~GG~c-~n~gciP~k~l~~~~~~~~~~~~~~~   68 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMY--GAKVALIEAKR-----------LGGTC-VNVGCVPKKLMWYGAQIAEAFHDYAP   68 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccc-----------hhhhh-hccCcchHHHHHHHHHHHHHHHhHHH
Confidence            468999999999999999999998  88999999742           24444 34555777766554321110000000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      ..++..          ...    ...|..+... ....+.+...+...+. .||+++.++++.+|+  ++|++ +|++++
T Consensus        69 ~~g~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~-~g~~~~  131 (450)
T PRK06116         69 GYGFDV----------TEN----KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV-NGERYT  131 (450)
T ss_pred             hcCCCC----------CCC----CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-CCEEEE
Confidence            000000          000    0000000000 0001112222233333 699999999999985  46766 677899


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|++||.+...          +......+...+++++||     |+|+|..|+++..
T Consensus       132 ~d~lViATGs~p~~p~i~g~~~~~----------~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  191 (450)
T PRK06116        132 ADHILIATGGRPSIPDIPGAEYGI----------TSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGS  191 (450)
T ss_pred             eCEEEEecCCCCCCCCCCCcceeE----------chhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            999999999999999999975211          111111223457899999     8999988876643

>KOG0405|consensus

Probab=99.53  E-value=1.8e-14  Score=141.62  Aligned_cols=189  Identities=16%  Similarity=0.175  Sum_probs=123.0

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      ..+.+|+++||||.+|+++|++.++.  +.++.|+|..    +..+.+|+..||.+        |++|.....+...-..
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~--GAkv~l~E~~----f~lGGTCVn~GCVP--------KKvm~~~a~~~~~~~d   82 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASH--GAKVALCELP----FGLGGTCVNVGCVP--------KKVMWYAADYSEEMED   82 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhc--CceEEEEecC----CCcCceEEeecccc--------ceeEEehhhhhHHhhh
Confidence            34579999999999999999999998  8999999862    23344555555544        4554444333222111


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc-
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS-  620 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~-  620 (706)
                      +..+++..         +....    +.|+.+.... .+...+.--|...+. .+|+++.+++.++++.+-+|...||+ 
T Consensus        83 a~~yG~~~---------~~~~~----fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~  149 (478)
T KOG0405|consen   83 AKDYGFPI---------NEEGS----FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTK  149 (478)
T ss_pred             hhhcCCcc---------ccccC----CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCee
Confidence            11111111         00000    1111111100 011111122333333 58999999999999998888888884 


Q ss_pred             -EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 -EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 -~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                       .+.+.+++||||++|.+|.|||.+-.          .++...++++..||+++|+     ++|+|+.++.+..+
T Consensus       150 ~~Ytak~iLIAtGg~p~~PnIpG~E~g----------idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgse  214 (478)
T KOG0405|consen  150 IVYTAKHILIATGGRPIIPNIPGAELG----------IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSE  214 (478)
T ss_pred             EEEecceEEEEeCCccCCCCCCchhhc----------cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCe
Confidence             37899999999999999999998722          2344566677899999999     99999999988754

>PRK06370 mercuric reductase; Validated

Probab=99.52  E-value=1.1e-14  Score=161.09  Aligned_cols=186  Identities=15%  Similarity=0.156  Sum_probs=111.2

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      +|.+|||||||+|+||++||.++++.  +.+|+|||+..          . ||.| ++..|.|.|.|+............
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~----------~-GG~c-~~~gciPsk~l~~~a~~~~~~~~~   67 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGL--GMKVALIERGL----------L-GGTC-VNTGCVPTKTLIASARAAHLARRA   67 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCc----------c-CCce-eccccCcHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999998  88999999742          1 3333 245567777766654222111100


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-C-CcEEEeceEEEEEcCCCeEEcCCCc
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-S-GATWVKDKIVSFDPENNRVRTQAGS  620 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-gv~~~~~~v~~id~~~~~V~~~~g~  620 (706)
                      .. .++..          ..   .....+..+..... ..+.+...+...++ . ||+++.+++..++  .++|.+ +++
T Consensus        68 ~~-~g~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~~v~v-~~~  130 (463)
T PRK06370         68 AE-YGVSV----------GG---PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PNTVRV-GGE  130 (463)
T ss_pred             Hh-cCccc----------Cc---cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CCEEEE-CcE
Confidence            00 00000          00   00000000000000 00111122333333 4 8999988887765  456666 456


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ++.||+||||||++|..|++||.+..        .+.+..........+++++||     |+|+|..++++..
T Consensus       131 ~~~~d~lViATGs~p~~p~i~G~~~~--------~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~  195 (463)
T PRK06370        131 TLRAKRIFINTGARAAIPPIPGLDEV--------GYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGS  195 (463)
T ss_pred             EEEeCEEEEcCCCCCCCCCCCCCCcC--------ceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            89999999999999999999997631        122222222233457899999     9999998877654

>PTZ00058 glutathione reductase; Provisional

Probab=99.52  E-value=1.3e-14  Score=161.41  Aligned_cols=182  Identities=17%  Similarity=0.210  Sum_probs=111.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .|||+|||||+||++||..+.+.  +.+|+|||++.           .||+| ++..|.|.|.|+..+.........   
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~--G~~ValIEk~~-----------~GGtC-ln~GCiPsK~l~~~a~~~~~~~~~---  110 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARN--KAKVALVEKDY-----------LGGTC-VNVGCVPKKIMFNAASIHDILENS---  110 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHc--CCeEEEEeccc-----------ccccc-cccCCCCCchhhhhcccHHHHHHH---
Confidence            47999999999999999999998  88999999742           24444 345567888888776433211100   


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCe-----------
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNR-----------  613 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~-----------  613 (706)
                      ..+.+         +...    ...+..+... ....+.+...+...++ .||+++.+++.++++..-.           
T Consensus       111 ~~~Gi---------~~~~----~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~  177 (561)
T PTZ00058        111 RHYGF---------DTQF----SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEA  177 (561)
T ss_pred             HhcCC---------CccC----ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccc
Confidence            00000         0000    0001111000 0011122233334444 6999999999888754322           


Q ss_pred             ---------E------EcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE---
Q psy8791         614 ---------V------RTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV---  675 (706)
Q Consensus       614 ---------V------~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi---  675 (706)
                               |      .+++|+++.||+||||||++|..|++||.+..+          +........ .+++++||   
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~g~~i~ad~lVIATGS~P~~P~IpG~~~v~----------ts~~~~~l~-~pk~VvIIGgG  246 (561)
T PTZ00058        178 DESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPDVKGKEFTI----------SSDDFFKIK-EAKRIGIAGSG  246 (561)
T ss_pred             cccccccceeeeccceecCCCcEEECCEEEEecCCCCCCCCCCCceeEE----------EHHHHhhcc-CCCEEEEECCc
Confidence                     2      134677899999999999999999999964111          111111222 37899999   


Q ss_pred             --cHHHHHHHHHHHhh
Q psy8791         676 --SPEIRAKAYDLTKR  689 (706)
Q Consensus       676 --G~E~A~~l~~~~~~  689 (706)
                        |+|+|..++++..+
T Consensus       247 ~iGlE~A~~l~~~G~~  262 (561)
T PTZ00058        247 YIAVELINVVNRLGAE  262 (561)
T ss_pred             HHHHHHHHHHHHcCCc
Confidence              99999999877654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.51  E-value=7.7e-14  Score=149.97  Aligned_cols=299  Identities=14%  Similarity=0.064  Sum_probs=171.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  109 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~id  109 (706)
                      .++|.|||||||||+||..|++.  +++||++|+.+.....- ...++......+.+...+..+.+.+++|........|
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll-~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~  199 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLL-LYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD  199 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeE-EecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc
Confidence            38999999999999999999999  99999999998632110 1112222222223334455555678888775443322


Q ss_pred             cCCCEEEeCCCeEEEecEEEEcccc-ccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCC
Q psy8791         110 PENNRVRTQAGSEISYEYMIVASGI-QMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQP  188 (706)
Q Consensus       110 ~~~~~v~~~~g~~~~yd~lviAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  188 (706)
                           ++++.- .-.||++++|+|+ .++...+||.+    +.|.                            ..+++  
T Consensus       200 -----it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d----~~gv----------------------------~~A~d--  239 (457)
T COG0493         200 -----ITLEEL-LKEYDAVFLATGAGKPRPLDIPGED----AKGV----------------------------AFALD--  239 (457)
T ss_pred             -----CCHHHH-HHhhCEEEEeccccCCCCCCCCCcC----CCcc----------------------------hHHHH--
Confidence                 222221 2357999999996 56777788832    1110                            00000  


Q ss_pred             CCCcccCCChhHHHHHHHHHHh-ccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC-C--cCCC
Q psy8791         189 DSGVSTNYSPQYVEKTLRNLQH-FQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM-G--VLFP  264 (706)
Q Consensus       189 ~~~v~~~~~~~~~~~~~~~l~~-~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~-~--~~~~  264 (706)
                                 -..+....... ..........+...++++|+...+ .++ ....+.|..   .++.+.+. .  ...+
T Consensus       240 -----------fL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~-D~~-~t~~r~Ga~---~v~~~~~~~~~~~~~~  303 (457)
T COG0493         240 -----------FLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM-DCA-GTALRLGAK---SVTCFYREDRDDETNE  303 (457)
T ss_pred             -----------HHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHH-HHH-HHHhhcCCe---EEEEeccccccccCCc
Confidence                       00011111111 000001111112333444442211 112 223344432   35544311 1  1111


Q ss_pred             -chhHHHHHHHHHHhCCceEEcCCceEEEeC-CCCEEEEE---eC------------------CCceEEeecEEEECCCC
Q psy8791         265 -SPFYAEKIHDILIGRGVDVHKGKALVEIDL-ANKEAVFK---SE------------------DKTERLPYAIMHVTPPM  321 (706)
Q Consensus       265 -~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~~v~~~---~~------------------~~g~~i~~D~vI~a~G~  321 (706)
                       +........+...+.|+.........++.. ++++|...   ..                  .+..++++|+|+.++|+
T Consensus       304 ~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~  383 (457)
T COG0493         304 WPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGF  383 (457)
T ss_pred             ccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhcc
Confidence             122344455667778888887776666664 33333311   10                  12246789999999999


Q ss_pred             Cchhhh--h-cCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH-HHHcCC
Q psy8791         322 GPVPEL--A-TSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS-AVMKNR  390 (706)
Q Consensus       322 ~~~~~~--~-~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~-~~l~g~  390 (706)
                      .++...  . ..++ .+..|.+.+++ .++.|+.|++||.||+....  .+...|+.+|+.+|+.|. ..+.+.
T Consensus       384 ~~~~~~~~~~~~~~~~~~~g~i~~~~-~~~~ts~~~vfa~gD~~~g~--~~vv~ai~eGr~aak~i~~~~l~~~  454 (457)
T COG0493         384 EGDATDGLLLEFGLKLDKRGRIKVDE-NLQQTSIPGVFAGGDAVRGA--ALVVWAIAEGREAAKAIDKELLLGK  454 (457)
T ss_pred             CCCcccccccccccccCCCCceeccc-ccccccCCCeeeCceeccch--hhhhhHHhhchHHHHhhhHHHHhhc
Confidence            998322  2 2245 77889999998 56459999999999999973  477789999999999998 555443

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.51  E-value=1.4e-14  Score=160.35  Aligned_cols=188  Identities=15%  Similarity=0.155  Sum_probs=110.1

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +++|||+|||||+||+++|..+.+.  +.+|+|||+++..          ||.|. +..+.|.|.|..............
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~--G~~v~liE~~~~~----------GG~~~-~~gcipsk~l~~~~~~~~~~~~~~   69 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKL--GKRVAVIERYRNV----------GGGCT-HTGTIPSKALREAVLRLIGFNQNP   69 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC--CCEEEEEeccccc----------ccccc-ccCCCCHHHHHHHHHHHHHHhhhh
Confidence            4578999999999999999999998  7899999985432          44443 223456554433221110000000


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhc-cCCcEEEeceEEEEEcCCCeEEcCCCc--
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGS--  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~~~V~~~~g~--  620 (706)
                      ....+..               .....+..+..... ..+.+...+...+ +.+++++.+++..+|.+..+|...+|+  
T Consensus        70 ~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~  134 (461)
T PRK05249         70 LYSSYRV---------------KLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVE  134 (461)
T ss_pred             hhcccCC---------------cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceE
Confidence            0000000               00000000000000 0001111122222 268999999999998876667766664  


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ++.||+||||||++|..|++++.+.  .      ...+..........+++++||     |+|+|..++++..
T Consensus       135 ~~~~d~lviATGs~p~~p~~~~~~~--~------~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~  199 (461)
T PRK05249        135 TLTADKIVIATGSRPYRPPDVDFDH--P------RIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGV  199 (461)
T ss_pred             EEEcCEEEEcCCCCCCCCCCCCCCC--C------eEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            7999999999999999888777531  1      122222233334468999999     8999999887654

>PRK13748 putative mercuric reductase; Provisional

Probab=99.50  E-value=1.2e-14  Score=164.74  Aligned_cols=187  Identities=16%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .|||||||||+||+++|..+++.  +.+|+|||++.           .||.|. +..|.|.|.|+.+...........+.
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~--G~~v~lie~~~-----------~GG~c~-n~gciPsk~l~~~~~~~~~~~~~~~~  163 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQ--GARVTLIERGT-----------IGGTCV-NVGCVPSKIMIRAAHIAHLRRESPFD  163 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCc-----------ceeecc-ccCccccHHHHHHHHHHHHHhccccc
Confidence            48999999999999999999998  78999999752           134433 34557877776654221111000000


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccc-ccccccc-chhhhcc-C-CcEEEeceEEEEEcCCCeEEcCCCc--
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRR-PMKSVLP-S-GATWVKDKIVSFDPENNRVRTQAGS--  620 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~-gv~~~~~~v~~id~~~~~V~~~~g~--  620 (706)
                      .++...        .+.      ..+..+..... ..+.+.. .+...+. . +|++++++++++|++...|.+.+|+  
T Consensus       164 ~g~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~  229 (561)
T PRK13748        164 GGIAAT--------VPT------IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGER  229 (561)
T ss_pred             CCccCC--------CCc------cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceE
Confidence            000000        000      00000000000 0011111 1223333 3 8999999999999876677766663  


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +++||+||||||++|..|++||.+..        .+.+..........+++++||     |+|+|..|+++..+
T Consensus       230 ~~~~d~lviAtGs~p~~p~i~g~~~~--------~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~  295 (561)
T PRK13748        230 VVAFDRCLIATGASPAVPPIPGLKET--------PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSK  295 (561)
T ss_pred             EEEcCEEEEcCCCCCCCCCCCCCCcc--------ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCE
Confidence            69999999999999999999997531        111111222223457899999     99999999877654

>TIGR02053 MerA mercuric reductase

Probab=99.50  E-value=2.6e-14  Score=158.05  Aligned_cols=181  Identities=17%  Similarity=0.234  Sum_probs=110.6

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      |||||||||+||+++|.+++++  +.+|+|||+++          + ||.| ++..|.|.|.|+.....+.......   
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~--g~~v~lie~~~----------~-GG~c-~n~gciPsk~l~~~~~~~~~~~~~~---   63 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL--GASVAMVERGP----------L-GGTC-VNVGCVPSKMLLRAAEVAHYARKPP---   63 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCc----------c-cCCe-eeecEEccHHHHHHHHHHHHhhccC---
Confidence            6899999999999999999998  88999999853          1 3433 3455678887776543221111000   


Q ss_pred             CceEEEeeecceecCCCcccccCccccccccccc-cccccc-chhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc-EEe
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKK-LSDSRR-PMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS-EIS  623 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~-~i~  623 (706)
                       +.+.        ...    ....+..+...... .+.+.. .+...++ .+|+++.+++.++|.  ++|.+.+|+ .+.
T Consensus        64 -~g~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~--~~v~v~~g~~~~~  128 (463)
T TIGR02053        64 -FGGL--------AAT----VAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDP--KTVKVDLGREVRG  128 (463)
T ss_pred             -cccc--------cCC----CccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccC--CEEEEcCCeEEEE
Confidence             0000        000    00011111111111 011111 1223333 689999999988764  577777653 689


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|++||.+..  .      +.+..........+++++||     |+|+|..|+++..
T Consensus       129 ~~~lIiATGs~p~~p~i~G~~~~--~------~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~  190 (463)
T TIGR02053       129 AKRFLIATGARPAIPPIPGLKEA--G------YLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGS  190 (463)
T ss_pred             eCEEEEcCCCCCCCCCCCCcccC--c------eECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            99999999999999999997632  1      22222222223356899999     8999998887654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02546 glutathione reductase

Probab=99.49  E-value=1.5e-14  Score=161.01  Aligned_cols=190  Identities=15%  Similarity=0.160  Sum_probs=114.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc-ccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI-VSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~  545 (706)
                      .|||+|||+|+||+.+|..++++  +.+|+|||+.-.-. .-.-..-.||.| ++..|+|.|.|+..+........ ..+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~~~~-~~~~~~~~GGtC-~n~GCiPsK~l~~aa~~~~~~~~~~~~  154 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNF--GASAAVCELPFATI-SSDTLGGVGGTC-VLRGCVPKKLLVYASKYSHEFEESRGF  154 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecccccc-ccccCCCccCcc-cCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence            47999999999999999999998  89999999520000 000000123333 35666788887766533221110 000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      +  +..         +..    ....|..+... ....+++...+...++ .||+++.++++++|++  +|.+ +|+++.
T Consensus       155 g--~~~---------~~~----~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v-~G~~~~  216 (558)
T PLN02546        155 G--WKY---------ETE----PKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDV-DGKLYT  216 (558)
T ss_pred             C--ccc---------CCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEE-CCEEEE
Confidence            0  000         000    00011111110 1112223334444444 6999999999999985  5655 577899


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|++||.+...          +..........+++|+||     |+|+|..|+++..
T Consensus       217 ~D~LVIATGs~p~~P~IpG~~~v~----------~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~  276 (558)
T PLN02546        217 ARNILIAVGGRPFIPDIPGIEHAI----------DSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKS  276 (558)
T ss_pred             CCEEEEeCCCCCCCCCCCChhhcc----------CHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            999999999999999999975211          111222233467899999     9999999887654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.49  E-value=2.7e-14  Score=157.57  Aligned_cols=195  Identities=14%  Similarity=0.118  Sum_probs=113.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .|||||||+|+||+.+|.++++.  +.+|++||+...-....  ....||.| ++..|.|.|.|+.++.........   
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~--G~~v~lie~~~~~~~~~--~~~~GGtc-~n~GCiPsK~l~~~a~~~~~~~~~---   73 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY--GAKVMLLDFVTPTPLGT--RWGIGGTC-VNVGCIPKKLMHQAALLGQALKDS---   73 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCCc--ceeccccc-cccCcCchhHHHHHHHHHHHHhhh---
Confidence            37999999999999999999998  88999999632100000  00124443 456667888777665322111100   


Q ss_pred             CCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--cEE
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SEI  622 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~~i  622 (706)
                      ..+.+.       .....    ...|..+.... ...+.+...+...++ .||+++++++.++|++...|...+|  +++
T Consensus        74 ~~~g~~-------~~~~~----~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~  142 (484)
T TIGR01438        74 RNYGWN-------VEETV----KHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIY  142 (484)
T ss_pred             hhcCcc-------cCCCc----ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEE
Confidence            000000       00000    00011111000 011122223333344 6999999999999976444443344  379


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      .||+||||||++|+.|++||.++..         .+..........+++++||     |+|+|..|+++..+
T Consensus       143 ~~d~lVIATGs~p~~p~ipG~~~~~---------~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~  205 (484)
T TIGR01438       143 SAERFLIATGERPRYPGIPGAKELC---------ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLD  205 (484)
T ss_pred             EeCEEEEecCCCCCCCCCCCcccee---------ecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCc
Confidence            9999999999999999999975321         1111122223457889999     99999999887654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.49  E-value=5e-14  Score=152.40  Aligned_cols=169  Identities=19%  Similarity=0.251  Sum_probs=121.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..++||||.|++|..+..++....|+ .+|+++...++..|....                                   
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~-----------------------------------   47 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRIL-----------------------------------   47 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcccccee-----------------------------------
Confidence            45899999999999999999986555 799999988877665421                                   


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccccccccccc-chhhhccCCcEEE-eceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR-PMKSVLPSGATWV-KDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gv~~~-~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                ...+..+..+.+++.. ....+.++||+++ ..+|++||++++.|++++|.++.
T Consensus        48 --------------------------Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~  101 (793)
T COG1251          48 --------------------------LSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVS  101 (793)
T ss_pred             --------------------------eccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEee
Confidence                                      1111112222333333 2333444799985 56899999999999999999999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhhhhhhhcccc
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKRKMKKEAQWI  698 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~~~~~~~~~~  698 (706)
                      ||+|||||||.|++|++||.+  ..++..++++.+.+.........++.+||     |+|.|..|.++.     -+.+|+
T Consensus       102 YDkLilATGS~pfi~PiPG~~--~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~G-----m~~~Vv  174 (793)
T COG1251         102 YDKLIIATGSYPFILPIPGSD--LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLG-----MEVTVV  174 (793)
T ss_pred             cceeEEecCccccccCCCCCC--CCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCC-----CceEEE
Confidence            999999999999999999987  55666666665555555444455565666     899998887654     455666


Q ss_pred             ccccc
Q psy8791         699 RFQEK  703 (706)
Q Consensus       699 ~~~~~  703 (706)
                      +..+.
T Consensus       175 h~~~~  179 (793)
T COG1251         175 HIAPT  179 (793)
T ss_pred             eecch
Confidence            65443

>PRK14727 putative mercuric reductase; Provisional

Probab=99.49  E-value=2.4e-14  Score=158.59  Aligned_cols=187  Identities=18%  Similarity=0.190  Sum_probs=112.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++|++|||+|+||+.+|..+++.  +.++++||+++..          ||+|. +..|.|.|.|+.....+......   
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~--g~~v~~ie~~~~~----------GG~c~-n~GciPsk~l~~~a~~~~~~~~~---   79 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEH--GARVTIIEGADVI----------GGCCV-NVGCVPSKILIRAAQLAHQQRSN---   79 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCcc----------eeEec-cccccccHHHHHHHHHHHHHhhc---
Confidence            58999999999999999999998  7899999985432          34433 34457777666544221111000   


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccc-ccccccc-chhhhcc--CCcEEEeceEEEEEcCCCeEEcCCCc--
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRR-PMKSVLP--SGATWVKDKIVSFDPENNRVRTQAGS--  620 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~--~gv~~~~~~v~~id~~~~~V~~~~g~--  620 (706)
                      +...+.      ...+.      ..+..+..... ...++.. .+...++  .+|+++.+++.++|.+...|.+.+|+  
T Consensus        80 ~~~g~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~  147 (479)
T PRK14727         80 PFDGVE------AVAPS------IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGER  147 (479)
T ss_pred             cccCcc------cCCCc------cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceE
Confidence            000000      00000      00000000000 0111111 1333343  38999999999998876667766764  


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +++||+||||||++|..|++||.++.        .+.+..........+++++||     |+|+|..++++..+
T Consensus       148 ~~~~d~lViATGs~p~~p~i~G~~~~--------~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~  213 (479)
T PRK14727        148 VLAADRCLIATGSTPTIPPIPGLMDT--------PYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSR  213 (479)
T ss_pred             EEEeCEEEEecCCCCCCCCCCCcCcc--------ceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCE
Confidence            69999999999999999999997531        011111111122357899999     99999999876543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.48  E-value=3.8e-14  Score=156.04  Aligned_cols=194  Identities=14%  Similarity=0.164  Sum_probs=111.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.|||+|||+|+||+.||.++.++. +.+|+|||++.... .+.... .||+| ++..|.|.|.|++.+.........  
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~-~~~~~~-~GGtC-ln~GCiPsK~l~~~a~~~~~~~~~--   75 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHG-PPHYAA-LGGTC-VNVGCVPKKLMVTGAQYMDTLRES--   75 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCcc-ccccCC-ccCee-cCcCCccHHHHHHHHHHHHHHHHh--
Confidence            4689999999999999999999841 57999999741100 000001 23433 356667888888776332211110  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc--CCcEEEeceEEEEEcCCCeEEcC---C-
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP--SGATWVKDKIVSFDPENNRVRTQ---A-  618 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~gv~~~~~~v~~id~~~~~V~~~---~-  618 (706)
                       ..+.+.        .....  ....|..+... ....+.+...+...++  .||+++++++.+++++.-.|...   + 
T Consensus        76 -~~~gi~--------~~~~~--~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~  144 (486)
T TIGR01423        76 -AGFGWE--------FDRSS--VKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKS  144 (486)
T ss_pred             -hccCee--------ccCCc--cccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCC
Confidence             000000        00000  00001111100 0112223334444554  38999999999988653333321   1 


Q ss_pred             --CcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         619 --GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       619 --g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                        .+++.||+||||||++|..|++||.+...          +......+...+++++||     |+|+|..+.++
T Consensus       145 ~~~~~~~~d~lIIATGs~p~~p~i~G~~~~~----------~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l  209 (486)
T TIGR01423       145 AVKERLQAEHILLATGSWPQMLGIPGIEHCI----------SSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAY  209 (486)
T ss_pred             CcceEEECCEEEEecCCCCCCCCCCChhhee----------chhhhhccccCCCeEEEECCCHHHHHHHHHHHHh
Confidence              24799999999999999999999975311          111112223457899999     99999988776

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.48  E-value=3.6e-14  Score=155.69  Aligned_cols=183  Identities=14%  Similarity=0.148  Sum_probs=106.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |.|||+|||||+||++||..++++  +.+|+|||++.           .||.|. +..|.|.|.|+...........   
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~-----------~GG~c~-~~gciPsk~l~~~a~~~~~~~~---   63 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEH--GAKALLVEAKK-----------LGGTCV-NVGCVPKKVMWYASDLAERMHD---   63 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEecccc-----------ccccee-ccCcCccHHHHHHHHHHHHHhH---
Confidence            358999999999999999999998  88999999842           244433 3444576665554321111000   


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      ...+.+.         ....  ....|..+... ....+.+...+...+. .||+++.+++...+  .++|.+ +++++.
T Consensus        64 ~~~~g~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v-~~~~~~  129 (450)
T TIGR01421        64 AADYGFY---------QNLE--NTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTVEV-NGRDYT  129 (450)
T ss_pred             HhhcCcc---------cCCc--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEE-CCEEEE
Confidence            0000000         0000  00000000000 0001111222333333 69999999887765  346665 566899


Q ss_pred             eCEEEEecCcccCcc-CCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         624 YEYMIVASGIQMYYD-RVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       624 yd~lViAtGs~~~~p-~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ||+||||||++|..| ++||.+...          +......+...+++++||     |+|+|..|+++..+
T Consensus       130 ~d~vIiAtGs~p~~p~~i~g~~~~~----------~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~  191 (450)
T TIGR01421       130 APHILIATGGKPSFPENIPGAELGT----------DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSE  191 (450)
T ss_pred             eCEEEEecCCCCCCCCCCCCCceeE----------cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence            999999999999999 899865211          111112223357899999     99999999876543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.48  E-value=3.8e-14  Score=156.96  Aligned_cols=187  Identities=18%  Similarity=0.183  Sum_probs=109.5

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      .+.|||+|||||+||++||.+++++  +.+|+|||++.           .||.|. +..|.|.|.++.....+...... 
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~-----------~GG~c~-~~gciPsk~l~~~a~~~~~~~~~-   66 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKGK-----------LGGTCL-HKGCIPSKALLHSAEVFQTAKKA-   66 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC--CCeEEEEEccC-----------CCcceE-cCCcCchHHHHHHHHHHHHHHHH-
Confidence            3578999999999999999999998  88999999742           134443 34456777776654332211100 


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-CCcEEEeceEEEEEcC-------CCeEE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-SGATWVKDKIVSFDPE-------NNRVR  615 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~-------~~~V~  615 (706)
                        ..+++         ....   ....|..+..... ..+.+...+..+++ .||+++.++++++|++       ..+|.
T Consensus        67 --~~~g~---------~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~  132 (472)
T PRK05976         67 --SPFGI---------SVSG---PALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVE  132 (472)
T ss_pred             --HhcCc---------cCCC---CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEE
Confidence              00000         0000   0000000000000 01111122233333 5899999999999988       55677


Q ss_pred             cCCC--cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         616 TQAG--SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       616 ~~~g--~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.+|  +++.||+||||||++|..+  ||.+  ....    ...+..........+++++||     |+|+|..|+++..
T Consensus       133 ~~~g~~~~~~~d~lViATGs~p~~~--p~~~--~~~~----~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~  204 (472)
T PRK05976        133 TETGENEMIIPENLLIATGSRPVEL--PGLP--FDGE----YVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGV  204 (472)
T ss_pred             eCCCceEEEEcCEEEEeCCCCCCCC--CCCC--CCCc----eEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            6676  5799999999999999744  4432  1110    011222222233457899999     8999999987653

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.48  E-value=3.7e-14  Score=156.39  Aligned_cols=185  Identities=17%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSS  548 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  548 (706)
                      +|+|||+|+||+++|.++++.  +.+|+|||+++.           ||.|. +..|.|.|.+++....+......   ..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~--g~~V~lie~~~~-----------GG~c~-n~gciPsk~l~~~a~~~~~~~~~---~~   64 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN--GKNVTLIDEADL-----------GGTCL-NEGCMPTKSLLESAEVHDKVKKA---NH   64 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC--CCcEEEEECCcc-----------cccCC-CCccccchHHHHHHHHHHHHHHH---Hh
Confidence            799999999999999999997  889999998541           33332 44567777776654322211100   00


Q ss_pred             ceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC-cEEeeC
Q psy8791         549 YTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG-SEISYE  625 (706)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g-~~i~yd  625 (706)
                      +.+.        .....  ....|..+... ....+++.......++ .+++++++++.++|++...|..+++ ++++||
T Consensus        65 ~g~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d  134 (458)
T PRK06912         65 FGIT--------LPNGS--ISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAE  134 (458)
T ss_pred             cCcc--------ccCCC--CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECC
Confidence            0000        00000  00000101000 0011112223333343 5899999999999877666665555 479999


Q ss_pred             EEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         626 YMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       626 ~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +||||||++|..|+++|.+..        ...+..........+++++||     |+|+|..+.++..
T Consensus       135 ~lviATGs~p~~~p~~~~~~~--------~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~  194 (458)
T PRK06912        135 QFIIAAGSEPTELPFAPFDGK--------WIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGT  194 (458)
T ss_pred             EEEEeCCCCCCCCCCCCCCCC--------eEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            999999999988888775411        111222222333457899999     9999998877653

>KOG1335|consensus

Probab=99.48  E-value=3.2e-14  Score=141.72  Aligned_cols=189  Identities=18%  Similarity=0.253  Sum_probs=134.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccc---cc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD---KI  542 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~---~~  542 (706)
                      .-+|++|||+|++|..||.+..+.  +.+.++||++...          ||+ +++..|+|+|.||...-.|...   +.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl--GlkTacvEkr~~L----------GGT-cLnvGcIPSKALL~nSh~yh~~q~~~~  104 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL--GLKTACVEKRGTL----------GGT-CLNVGCIPSKALLNNSHLYHEAQHEDF  104 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh--cceeEEEeccCcc----------Cce-eeeccccccHHHhhhhHHHHHHhhhHH
Confidence            368999999999999999999999  8999999997653          333 3466778999999987555332   33


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--  619 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--  619 (706)
                      .+++.++.-.++.+...++..               ....+++...+..+++ ++|+++.+....+||..-++.-.||  
T Consensus       105 ~~rGi~vs~~~~dl~~~~~~k---------------~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~  169 (506)
T KOG1335|consen  105 ASRGIDVSSVSLDLQAMMKAK---------------DNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGED  169 (506)
T ss_pred             HhcCccccceecCHHHHHHHH---------------HHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCc
Confidence            344333322111111111111               1123445556666776 7899999999999998777776777  


Q ss_pred             cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhhh
Q psy8791         620 SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKRK  690 (706)
Q Consensus       620 ~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~~  690 (706)
                      ..+.++++||||||.-  +++||+.  .++    +.+.++.....+..-|++++||     |+|++..+.++..++
T Consensus       170 ~ii~aKnIiiATGSeV--~~~PGI~--IDe----kkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseV  237 (506)
T KOG1335|consen  170 QIIKAKNIIIATGSEV--TPFPGIT--IDE----KKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEV  237 (506)
T ss_pred             eEEeeeeEEEEeCCcc--CCCCCeE--ecC----ceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeE
Confidence            4689999999999963  3778876  444    3455666666777889999999     999999998887653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.47  E-value=3e-14  Score=157.15  Aligned_cols=189  Identities=15%  Similarity=0.207  Sum_probs=108.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ++|||+|||+|+||++||.++.++  +.+|+|||+++.          .||.| ++..|.|.|.|+.....+....-.. 
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~----------~GG~c-~~~gciPsK~l~~~~~~~~~~~~~~-   67 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRST----------LGGTC-LNVGCMPSKALLHASELYEAASGGE-   67 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCc----------eeeee-ccCcccccHHHHHHhHHHHHHhhhh-
Confidence            468999999999999999999998  899999996432          13443 3455667777777654332110000 


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc--E
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS--E  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~--~  621 (706)
                      ...+.+.       ...      ...+...... ......+.......++ .+|+++.+++...++.+..|.+.+|+  +
T Consensus        68 ~~~~gi~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~  134 (466)
T PRK06115         68 FAHLGIE-------VKP------TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQ  134 (466)
T ss_pred             hhhcCcc-------ccC------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEE
Confidence            0000000       000      0000000000 0001111122333333 58999999986666544445556664  6


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ++||+||||||++|.  ++||.+  .+..    ...++.........+++++||     |+|+|..++++..+
T Consensus       135 ~~~d~lVIATGs~p~--~ipg~~--~~~~----~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~  199 (466)
T PRK06115        135 LEAKDIVIATGSEPT--PLPGVT--IDNQ----RIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQ  199 (466)
T ss_pred             EEeCEEEEeCCCCCC--CCCCCC--CCCC----eEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence            999999999999985  577764  2221    112222222233468999999     99999988876543

>PRK07846 mycothione reductase; Reviewed

Probab=99.46  E-value=8.5e-14  Score=152.68  Aligned_cols=179  Identities=14%  Similarity=0.137  Sum_probs=110.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc-cccC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI-VSFD  546 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  546 (706)
                      ||+||||+|+||..+|.+.  .  +.+|+|||++.           .||.| ++..|.|.|.|+..+........ ..++
T Consensus         2 yD~vVIG~G~~g~~aa~~~--~--G~~V~lie~~~-----------~GGtC-~n~GCiPsK~l~~~a~~~~~~~~~~~~g   65 (451)
T PRK07846          2 YDLIIIGTGSGNSILDERF--A--DKRIAIVEKGT-----------FGGTC-LNVGCIPTKMFVYAADVARTIREAARLG   65 (451)
T ss_pred             CCEEEECCCHHHHHHHHHH--C--CCeEEEEeCCC-----------CCCcc-cCcCcchhHHHHHHHHHHHHHHHHHhCC
Confidence            7999999999999988653  3  78999999743           13333 45666788887776644322111 0010


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccc-cccccccc-hhhh-cc-CCcEEEeceEEEEEcCCCeEEcCCCcEE
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRP-MKSV-LP-SGATWVKDKIVSFDPENNRVRTQAGSEI  622 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i  622 (706)
                          +.        ....    ...|..+..... ..+++... .... ++ .||+++.+++.+++  +++|.+.+|+++
T Consensus        66 ----~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~V~v~~g~~~  127 (451)
T PRK07846         66 ----VD--------AELD----GVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PKTLRTGDGEEI  127 (451)
T ss_pred             ----cc--------CCCC----cCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CCEEEECCCCEE
Confidence                00        0000    001111111000 11111111 2222 33 69999999999985  568888888899


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|..|++||.+..        .+.+......+...+++++||     |+|+|..|+++..
T Consensus       128 ~~d~lViATGs~p~~p~i~g~~~~--------~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~  190 (451)
T PRK07846        128 TADQVVIAAGSRPVIPPVIADSGV--------RYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGV  190 (451)
T ss_pred             EeCEEEEcCCCCCCCCCCCCcCCc--------cEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            999999999999999999996421        122222233334467899999     9999999887653

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.44  E-value=5.5e-13  Score=139.06  Aligned_cols=156  Identities=20%  Similarity=0.181  Sum_probs=98.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      +||+|||||+||+++|..|++.  +.+|+|||+++.           ||.......                        
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~-----------gg~~~~~~~------------------------   43 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA--NLKTLIIEGMEP-----------GGQLTTTTE------------------------   43 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEeccCC-----------Ccceeeccc------------------------
Confidence            5899999999999999999987  789999998652           111100000                        


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEeceEEEEEcCCC--eEEcCCCcEEee
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENN--RVRTQAGSEISY  624 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~~--~V~~~~g~~i~y  624 (706)
                                        .+..|.++...    ...++...+.+.+ +.+++++.++|+.++++++  +|.+.+++++.|
T Consensus        44 ------------------~~~~~~~~~~~----~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~  101 (300)
T TIGR01292        44 ------------------VENYPGFPEGI----SGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTA  101 (300)
T ss_pred             ------------------ccccCCCCCCC----ChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEe
Confidence                              00000000000    0012222333333 2588887799999998765  566677789999


Q ss_pred             CEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         625 EYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       625 d~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      |+||+|||++|..|++||.+......     .............+++|+||     |+|+|..+++..
T Consensus       102 d~liiAtG~~~~~~~i~g~~~~~~~~-----~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~  164 (300)
T TIGR01292       102 KAVIIATGASARKLGIPGEDEFLGRG-----VSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIA  164 (300)
T ss_pred             CEEEECCCCCcccCCCCChhhcCCcc-----EEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhc
Confidence            99999999999999999976432211     11110111122356789999     889988887654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.44  E-value=1.3e-13  Score=152.47  Aligned_cols=186  Identities=16%  Similarity=0.172  Sum_probs=108.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..||++|||||+||++||..++++  +.+|+|||++.           .||.|. +..|.|.|.++.....+......  
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~--G~~V~liE~~~-----------~GG~c~-~~gciP~k~l~~~~~~~~~~~~~--   66 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL--GLKVAIVEKEK-----------LGGTCL-NRGCIPSKALLHAAERADEARHS--   66 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCcEEEEeccc-----------ccccee-ecccCCcHHHHHhhhHHHHHHHH--
Confidence            358999999999999999999998  88999999854           144433 34456777666655322211000  


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCC-CcEE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQA-GSEI  622 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~-g~~i  622 (706)
                       +.+++         +..   .....+..+.... ...+.+...+...++ .||+++.++++.+|+++.+|...+ ++++
T Consensus        67 -~~~g~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~  133 (462)
T PRK06416         67 -EDFGI---------KAE---NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTY  133 (462)
T ss_pred             -HhcCc---------ccC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEE
Confidence             00000         000   0000000000000 001112223333333 699999999999998766665433 4689


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +||+||||||++|..  +||.+.  ...    ...+..........+++++||     |+|+|..|+++..
T Consensus       134 ~~d~lViAtGs~p~~--~pg~~~--~~~----~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~  196 (462)
T PRK06416        134 TAKNIILATGSRPRE--LPGIEI--DGR----VIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGA  196 (462)
T ss_pred             EeCEEEEeCCCCCCC--CCCCCC--CCC----eEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            999999999999974  366541  110    111211222223457899999     8999998877643

>KOG1336|consensus

Probab=99.44  E-value=3.7e-13  Score=139.42  Aligned_cols=155  Identities=17%  Similarity=0.146  Sum_probs=111.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      -..++|||+|++|..|+..+++..+..+++++..+.+++|.+.-  +            | +.                 
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~--L------------s-~~-----------------  121 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRAR--L------------S-KF-----------------  121 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchh--c------------c-cc-----------------
Confidence            34799999999999999999999888999999877776654410  0            0 00                 


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEE-EeceEEEEEcCCCeEEcCCCcEEee
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATW-VKDKIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~-~~~~v~~id~~~~~V~~~~g~~i~y  624 (706)
                                |..                     ..+++.....++++ .+|++ +.+.|+.+|..+++|.+.+|+++.|
T Consensus       122 ----------~~~---------------------~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~ky  170 (478)
T KOG1336|consen  122 ----------LLT---------------------VGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGETLKY  170 (478)
T ss_pred             ----------eee---------------------ccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCCceeec
Confidence                      000                     01112222223333 68998 5678999999999999999999999


Q ss_pred             CEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         625 EYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       625 d~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                      ++|+||||+++++|++||.+  .+++..++...++............|+++     |+|+|++|..-
T Consensus       171 s~LilATGs~~~~l~~pG~~--~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~  235 (478)
T KOG1336|consen  171 SKLIIATGSSAKTLDIPGVE--LKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSK  235 (478)
T ss_pred             ceEEEeecCccccCCCCCcc--ccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhc
Confidence            99999999999999999988  66666666655544333333445567777     77777777654

>KOG4716|consensus

Probab=99.43  E-value=8.5e-14  Score=136.30  Aligned_cols=197  Identities=14%  Similarity=0.159  Sum_probs=120.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .||++|||||.+|++||+++...  +.+|.++|--..   +|..+.++-|-...|..|+| |+||+.+....+.-..+..
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~--G~kV~~lDfV~P---tP~GtsWGlGGTCvNVGCIP-KKLMHQAallG~al~da~k   92 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADL--GAKVACLDFVKP---TPQGTSWGLGGTCVNVGCIP-KKLMHQAALLGEALHDARK   92 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhc--CCcEEEEeeccc---CCCCCccccCceeeeccccc-HHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999998  889999983111   12222221122222333445 7888887666665555555


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchh-hhccCCcEEEeceEEEEEcCCCeEEcCCC--cEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK-SVLPSGATWVKDKIVSFDPENNRVRTQAG--SEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~i~  623 (706)
                      ++|++.        +....+.|.-+...+.....+   +.-.++ ++.+..|.++++-.+++|+++...+..+|  +.++
T Consensus        93 yGW~~~--------e~~ikhdW~~l~~sVqnhI~s---~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~t  161 (503)
T KOG4716|consen   93 YGWNVD--------EQKIKHDWNKLVKSVQNHIKS---LNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLT  161 (503)
T ss_pred             hCCCCc--------cccccccHHHHHHHHHHHhhh---ccceEEEEeccceeeeeecceeecccceEEEecCCCceEEee
Confidence            555543        222222222111111110000   000000 11124677888888999988666666666  3589


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +++.|||||.+|+.|.|||..+.         -.++...+.+...|.+-.||     ++|.|+.|+.+..+
T Consensus       162 a~~fvIatG~RPrYp~IpG~~Ey---------~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~  223 (503)
T KOG4716|consen  162 AENFVIATGLRPRYPDIPGAKEY---------GITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYD  223 (503)
T ss_pred             cceEEEEecCCCCCCCCCCceee---------eecccccccccCCCCceEEEccceeeeehhhhHhhcCCC
Confidence            99999999999999999996542         12333445555566665565     99999999888744

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.39  E-value=3e-13  Score=149.23  Aligned_cols=188  Identities=13%  Similarity=0.171  Sum_probs=106.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      |++|+|||+|++|+.+|..+.++  +.+|+|||++..           ||.|. +..|.|.|.++............   
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~--g~~v~~~e~~~~-----------gG~c~-~~gciPsK~l~~~a~~~~~~~~~---   63 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQL--GADVTVIERDGL-----------GGAAV-LTDCVPSKTLIATAEVRTELRRA---   63 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCC-----------CCccc-ccCCcchHHHHHHHHHHHHHHHH---
Confidence            67899999999999999999998  889999997531           44444 44557877776654221111000   


Q ss_pred             CCceEEEeeecceecCCCcccccCccccccccccc-ccccccchhhhcc-CCcEEEeceEEEE----EcCCCeEEcCCCc
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKK-LSDSRRPMKSVLP-SGATWVKDKIVSF----DPENNRVRTQAGS  620 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~gv~~~~~~v~~i----d~~~~~V~~~~g~  620 (706)
                      ..+.+.       ......  ....+..+...... .+.+...+.+.+. .||+++.++++.+    +++..+|.+.+|+
T Consensus        64 ~~~g~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~  134 (466)
T PRK07845         64 AELGIR-------FIDDGE--ARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGG  134 (466)
T ss_pred             HhCCcc-------cccCcc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCc
Confidence            000000       000000  00001111100000 0111122223232 6999999999994    4444445556675


Q ss_pred             --EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 --EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 --~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                        ++.||+||||||++|..|++++.+  ...+      .+..........+++++||     |+|+|..|+++..
T Consensus       135 ~~~~~~d~lViATGs~p~~~p~~~~~--~~~v------~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~  201 (466)
T PRK07845        135 EETLDADVVLIATGASPRILPTAEPD--GERI------LTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGV  201 (466)
T ss_pred             eEEEecCEEEEcCCCCCCCCCCCCCC--CceE------EeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence              799999999999999876655432  1111      1111122223356889999     8899988877654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.39  E-value=5e-13  Score=147.79  Aligned_cols=187  Identities=12%  Similarity=0.085  Sum_probs=104.4

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      |.+|||+|||||+||++||.++++.  +.+|+|||++.          + ||.|. +..|.|.|.++.............
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~~----------~-GG~c~-~~gciPsk~l~~~~~~~~~~~~~~   67 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKKY----------W-GGVCL-NVGCIPSKALLRNAELAHIFTKEA   67 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCC----------C-CCcee-cCCccccHHHHhhHHHHHHHHHHH
Confidence            3468999999999999999999998  89999999742          1 33332 334557766655432111100000


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--c
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--S  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~  620 (706)
                        ..+++         +..    ....+........ ..+.........++ .+|+.+.+++.+++.....|...+|  +
T Consensus        68 --~~~gi---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~  132 (466)
T PRK07818         68 --KTFGI---------SGE----VTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTE  132 (466)
T ss_pred             --HhcCC---------CcC----cccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCee
Confidence              00000         000    0000000000000 00011112222232 4899999998888876545555555  3


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +++||+||||||++|..|  ||.+.  ..     ...+..........+++++||     |+|+|..++++..+
T Consensus       133 ~~~~d~lViATGs~p~~~--pg~~~--~~-----~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~  197 (466)
T PRK07818        133 TVTFDNAIIATGSSTRLL--PGTSL--SE-----NVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVD  197 (466)
T ss_pred             EEEcCEEEEeCCCCCCCC--CCCCC--CC-----cEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence            799999999999999753  66531  11     011111111122357899999     99999998877644

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.39  E-value=1.7e-12  Score=141.16  Aligned_cols=189  Identities=14%  Similarity=0.145  Sum_probs=112.2

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCc-EEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQ-VSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~-i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      +.+++++|||||++|+++|++|++.  +.. ++|+|+++...-                             .|....+.
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg-----------------------------~W~~~ry~   54 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGG-----------------------------TWRYNRYP   54 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCC-----------------------------cchhccCC
Confidence            3567999999999999999999998  444 999999875431                             11111110


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCccccc----ccccccccccccchhhhcc--CCcEEEeceEEEEEcCC--C--e
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLI----GGGMKKLSDSRRPMKSVLP--SGATWVKDKIVSFDPEN--N--R  613 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~gv~~~~~~v~~id~~~--~--~  613 (706)
                      +.         .+|   .+...+ .-+..++.    ........++...+.+...  ..+. ++..|..++++.  +  +
T Consensus        55 ~l---------~~~---~p~~~~-~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~-~~~~v~~~~~~~~~~~w~  120 (443)
T COG2072          55 GL---------RLD---SPKWLL-GFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIR-FNTRVEVADWDEDTKRWT  120 (443)
T ss_pred             ce---------EEC---Cchhee-ccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEE-cccceEEEEecCCCCeEE
Confidence            00         000   000000 00011110    0011112222223222222  1232 333333344433  2  5


Q ss_pred             EEcCCCcE--EeeCEEEEecCc--ccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHH
Q psy8791         614 VRTQAGSE--ISYEYMIVASGI--QMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAY  684 (706)
Q Consensus       614 V~~~~g~~--i~yd~lViAtGs--~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~  684 (706)
                      |+++++.+  +.+|+||+|||.  .|++|.++|.+++...     .++++.+....+..+|+|+||     |+++|.+|.
T Consensus       121 V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~-----~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~  195 (443)
T COG2072         121 VTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGR-----ILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELA  195 (443)
T ss_pred             EEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCce-----EEchhcCCCccccCCCeEEEECCCccHHHHHHHHH
Confidence            77777755  559999999995  8999999999876553     455555666667789999999     899999998


Q ss_pred             HHHhh--hhhhhccccccccc
Q psy8791         685 DLTKR--KMKKEAQWIRFQEK  703 (706)
Q Consensus       685 ~~~~~--~~~~~~~~~~~~~~  703 (706)
                      +.+++  .++|..+|+.+...
T Consensus       196 ~~ga~vt~~qRs~~~~~~~~~  216 (443)
T COG2072         196 EVGASVTLSQRSPPHILPKPL  216 (443)
T ss_pred             hcCCeeEEEecCCCceecccc
Confidence            88644  56777777765443

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.39  E-value=9.9e-13  Score=147.91  Aligned_cols=157  Identities=16%  Similarity=0.165  Sum_probs=99.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .+|||+|||||+||++||..++++  +.+|+|||++..           ||.+......                     
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~~~-----------GG~~~~~~~i---------------------   48 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKDDF-----------GGQITITSEV---------------------   48 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC-----------CceEEecccc---------------------
Confidence            468999999999999999999987  899999998542           2221100000                     


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCC--eEEcCCCcEE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENN--RVRTQAGSEI  622 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~--~V~~~~g~~i  622 (706)
                                     .      ..+..     ......++...+.+... .|++++.++|+.++++.+  .|.+.++ ++
T Consensus        49 ---------------~------~~pg~-----~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~  101 (555)
T TIGR03143        49 ---------------V------NYPGI-----LNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG-DY  101 (555)
T ss_pred             ---------------c------cCCCC-----cCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC-EE
Confidence                           0      00000     00011122222322222 589999999999998664  4555555 78


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|+.|++||.+.....     ..............+++|+||     |+|+|..|+++..
T Consensus       102 ~a~~lVlATGa~p~~~~ipG~~~~~~~-----~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~  167 (555)
T TIGR03143       102 KTLAVLIATGASPRKLGFPGEEEFTGR-----GVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYAS  167 (555)
T ss_pred             EEeEEEECCCCccCCCCCCCHHHhCCc-----eEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCC
Confidence            999999999999999999997542211     111111111122357899999     8899888876553

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.39  E-value=2.6e-13  Score=152.90  Aligned_cols=201  Identities=17%  Similarity=0.140  Sum_probs=111.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .|||+|||+|+||+.+|..+.++  +.+|+|||++...         .||+| ++..|.|.|.|+..+..+.........
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~--G~kV~lie~~~~~---------lGGtC-vn~GCiPsK~l~~~a~~~~~~~~~~~~  183 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMER--GLKVIIFTGDDDS---------IGGTC-VNVGCIPSKALLYATGKYRELKNLAKL  183 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCc---------cccce-eEeCCcchHHHHHHHHHHHHHHhcccc
Confidence            68999999999999999999998  8999999963221         13333 355567888887776544332211100


Q ss_pred             CCceEEE----eeecceecCCCcccc--cCcccccccccc-cccccccchhhhcc-C-------CcEEEeceEEEEEcCC
Q psy8791         547 SSYTFTI----LILHSIVEPTDDHYY--QPMFTLIGGGMK-KLSDSRRPMKSVLP-S-------GATWVKDKIVSFDPEN  611 (706)
Q Consensus       547 ~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-------gv~~~~~~v~~id~~~  611 (706)
                      +.+++..    -.-.+.+++......  ...|..+..... ..+.+...+...++ .       +++++.++...+++. 
T Consensus       184 ~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~-  262 (659)
T PTZ00153        184 YTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKN-  262 (659)
T ss_pred             ccCCeeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCC-
Confidence            1111100    000000000000000  000110000000 01112222222232 2       489999999988866 


Q ss_pred             CeEEc-CCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHH
Q psy8791         612 NRVRT-QAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYD  685 (706)
Q Consensus       612 ~~V~~-~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~  685 (706)
                       +|.+ .+|+++.||+||||||++|..|++++.+.  .      ...+......+...+++++||     |+|+|..+++
T Consensus       263 -~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~--~------~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~  333 (659)
T PTZ00153        263 -TIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQ--K------SVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTA  333 (659)
T ss_pred             -eEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCC--C------cEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHh
Confidence             4433 46778999999999999999887666431  1      112222222233457899999     9999988877


Q ss_pred             HHhh
Q psy8791         686 LTKR  689 (706)
Q Consensus       686 ~~~~  689 (706)
                      +..+
T Consensus       334 ~G~e  337 (659)
T PTZ00153        334 LGSE  337 (659)
T ss_pred             CCCe
Confidence            6543

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.38  E-value=7.9e-13  Score=146.72  Aligned_cols=191  Identities=15%  Similarity=0.126  Sum_probs=107.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC-CcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD-HYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +|||+|||||+||++||.++.++  +.+|+|||++.. ..-   .....||.| ++..|.|.|.++..+.......... 
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~--G~~V~lie~~~~~~~~---~~~~~GG~C-~n~gciPsK~l~~~a~~~~~~~~~~-   77 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH--GKKVALFDYVKPSTQG---TKWGLGGTC-VNVGCVPKKLMHYAANIGSIFHHDS-   77 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCCCCcc---cccccccee-ccccccchHHHHHHHHHHHHHHhHH-
Confidence            68999999999999999999998  899999996321 000   001124544 4555567665444331111100000 


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCC---Cc
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQA---GS  620 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~---g~  620 (706)
                       ..+.+         ....    ...+..+..... ..+.+...+...+. .+|+++.+++.+.|..  +|.+.+   ++
T Consensus        78 -~~~g~---------~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~--~v~v~~~~~~~  141 (499)
T PTZ00052         78 -QMYGW---------KTSS----SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEH--TVSYGDNSQEE  141 (499)
T ss_pred             -hcCCC---------CCCC----CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCC--EEEEeeCCCce
Confidence             00000         0000    000000000000 01111122222222 5899999999887654  555432   35


Q ss_pred             EEeeCEEEEecCcccCccC-CCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 EISYEYMIVASGIQMYYDR-VKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      .++||+||||||++|..|+ +||.++..         .+..........+++++||     |+|+|..|+++..+
T Consensus       142 ~i~~d~lIIATGs~p~~p~~i~G~~~~~---------~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~  207 (499)
T PTZ00052        142 TITAKYILIATGGRPSIPEDVPGAKEYS---------ITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFD  207 (499)
T ss_pred             EEECCEEEEecCCCCCCCCCCCCcccee---------ecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence            7999999999999999884 89865311         1111222333457899999     99999999877654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.37  E-value=5.6e-13  Score=147.62  Aligned_cols=184  Identities=17%  Similarity=0.186  Sum_probs=107.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccc-cccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDK-IVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  545 (706)
                      +|||+|||||+||+++|.+|++.  +.+|+|||+ +..          ||.|. +..|.|.|.++.....+.... ...+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~--G~~v~lie~-~~~----------GG~~~-~~gc~Psk~l~~~~~~~~~~~~~~~~   66 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQL--GLKVALVEK-EYL----------GGTCL-NVGCIPTKALLHSAEVYDEIKHAKDY   66 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhC--CCeEEEEec-CCC----------CCcee-ecCccchHHHHHHhhHHHHHHHHHhc
Confidence            37999999999999999999987  889999998 321          34332 444567766655443221110 0000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC-cEE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG-SEI  622 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g-~~i  622 (706)
                          ++         +...   ....+..+..... ..+.+...+..+++ .|++++.+++..+|+....|...+| .++
T Consensus        67 ----g~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~  130 (461)
T TIGR01350        67 ----GI---------EVEN---VSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETL  130 (461)
T ss_pred             ----CC---------CCCC---CcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEE
Confidence                00         0000   0000000000000 00111122233333 5899999999999876656665555 479


Q ss_pred             eeCEEEEecCcccCccCCC-CchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVK-GGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|+.|++| +.+.  .      ...+..........+++++||     |+|+|..++++..
T Consensus       131 ~~d~lVlAtG~~p~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  194 (461)
T TIGR01350       131 TAKNIIIATGSRPRSLPGPFDFDG--E------VVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGS  194 (461)
T ss_pred             EeCEEEEcCCCCCCCCCCCCCCCC--c------eEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            9999999999999888876 3221  0      112222222333467899999     8899988877653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.37  E-value=3.5e-13  Score=149.12  Aligned_cols=185  Identities=14%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      |.+|||||||||+||+++|.+|.+.  +.+|+|||++.           .||.|. +..|.|.|.++............ 
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~-----------~GG~~~-~~gc~psk~l~~~~~~~~~~~~~-   65 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKL--GKKVALIEKGP-----------LGGTCL-NVGCIPSKALIAAAEAFHEAKHA-   65 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCc-----------ccccee-ccceeeHHHHHHHHHHHHHHHHH-
Confidence            3568999999999999999999987  78999999832           134333 33456766666544221110000 


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccccc-ccccccch-hhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKK-LSDSRRPM-KSVLP-SGATWVKDKIVSFDPENNRVRTQAGSE  621 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~  621 (706)
                        +.+.+         +...   ....+..+...... .+.+...+ ...+. .+++++.+++..++..  ++.+ ++++
T Consensus        66 --~~~gi---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~v~v-~~~~  128 (460)
T PRK06292         66 --EEFGI---------HADG---PKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPN--TVEV-NGER  128 (460)
T ss_pred             --HhcCC---------CcCC---CccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCC--EEEE-CcEE
Confidence              00000         0000   00000000000000 01111111 12222 5899999999888765  4544 6778


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++  .|++||.... ..    ....+......+...+++++||     |+|+|..|+++..
T Consensus       129 ~~~d~lIiATGs~--~p~ipg~~~~-~~----~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~  193 (460)
T PRK06292        129 IEAKNIVIATGSR--VPPIPGVWLI-LG----DRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGV  193 (460)
T ss_pred             EEeCEEEEeCCCC--CCCCCCCccc-CC----CcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            9999999999999  6678886431 11    1122222223344567899999     8899988877653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.37  E-value=3.5e-13  Score=149.19  Aligned_cols=194  Identities=13%  Similarity=0.126  Sum_probs=107.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.||++|||+|+||++||.++++.  +.+|+|||+.....    .....||+| .+..|.|.|.++.....+......  
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~~~~~~----g~~~~Gg~c-~n~gc~P~k~l~~~a~~~~~~~~~--   73 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEAWKNPK----GKPALGGTC-LNVGCIPSKALLASSEEFENAGHH--   73 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC--CCeEEEEecccCCC----CCCCcCCcc-ccccccHHHHHHHHHHHHHHHHhh--
Confidence            468999999999999999999998  78999999721000    001134544 355556777666554322111100  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-CCcEEEeceEEEEEcC--CCeEEcC--CC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-SGATWVKDKIVSFDPE--NNRVRTQ--AG  619 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~--~~~V~~~--~g  619 (706)
                      ...+.+         +...   ....++.+..... ..+.+...+..+++ .+|+++.+++.+++.+  ..+|.+.  ++
T Consensus        74 ~~~~G~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~  141 (475)
T PRK06327         74 FADHGI---------HVDG---VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE  141 (475)
T ss_pred             HHhcCc---------cCCC---CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC
Confidence            000000         0000   0000000000000 01111223333444 6899999999999843  4466553  34


Q ss_pred             cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         620 SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       620 ~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ++++||+||||||++|..+  |+.+  ...    ...++......+...+++|+||     |+|+|..++++..
T Consensus       142 ~~~~~d~lViATGs~p~~~--p~~~--~~~----~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~  207 (475)
T PRK06327        142 TVITAKHVIIATGSEPRHL--PGVP--FDN----KIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGA  207 (475)
T ss_pred             eEEEeCEEEEeCCCCCCCC--CCCC--CCC----ceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            6899999999999999743  3332  111    1122222223334467899999     8899888876643

>PRK10262 thioredoxin reductase; Provisional

Probab=99.36  E-value=3.1e-12  Score=134.63  Aligned_cols=160  Identities=16%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      .+.+||+|||||+||++||..++++  +.++++||....           ||.+....                      
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~~-----------gg~~~~~~----------------------   48 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEK-----------GGQLTTTT----------------------   48 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeecC-----------CCceecCc----------------------
Confidence            3567999999999999999999988  778999985321           12111000                      


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcC-CCcEE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQ-AGSEI  622 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~-~g~~i  622 (706)
                                         ..+.+ |..+.    ......+...+.+... .++++..++|+.|+...+.+++. +...+
T Consensus        49 -------------------~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~  104 (321)
T PRK10262         49 -------------------EVENW-PGDPN----DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEY  104 (321)
T ss_pred             -------------------eECCC-CCCCC----CCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEE
Confidence                               00000 00000    0000111122222222 45677777888898877765443 23479


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||+.|+.|++||.+.+..     +..............+++++||     |+|+|..|+++.+
T Consensus       105 ~~d~vilAtG~~~~~~~i~g~~~~~~-----~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~  170 (321)
T PRK10262        105 TCDALIIATGASARYLGLPSEEAFKG-----RGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIAS  170 (321)
T ss_pred             EECEEEECCCCCCCCCCCCCHHHcCC-----CcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCC
Confidence            99999999999999999999653222     1111222222333467899999     8999999887654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.35  E-value=3.3e-12  Score=139.45  Aligned_cols=191  Identities=15%  Similarity=0.206  Sum_probs=104.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeecccccccccc-------ccccccCCCCcccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSR-------RPMKSVLPSGATWV  538 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~-------~~~~~l~~~~~~~~  538 (706)
                      ..++|+|||||+||++||+.|++.  +.+++|+|+++...          |........       .|-+..+++. .| 
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~--G~~v~vfE~~~~vG----------G~W~~~~~~~~d~~~~~~~~~~~~s~-~Y-   74 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRRE--GHTVVVFEREKQVG----------GLWVYTPKSESDPLSLDPTRSIVHSS-VY-   74 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhc--CCeEEEEecCCCCc----------ceeecCCCcCCCccccCCCCcccchh-hh-
Confidence            357899999999999999999998  78999999987642          222111100       0000000000 00 


Q ss_pred             cccccccCCCceEEEeeecceecCCCccc-ccCccccc------ccccccccccccchhhhcc-CCcE--E-EeceEEEE
Q psy8791         539 KDKIVSFDSSYTFTILILHSIVEPTDDHY-YQPMFTLI------GGGMKKLSDSRRPMKSVLP-SGAT--W-VKDKIVSF  607 (706)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~gv~--~-~~~~v~~i  607 (706)
                              .+       |++.+.+...-+ .-|..+..      .......+++...+..+.+ .++.  + ++++|+.|
T Consensus        75 --------~~-------L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V  139 (461)
T PLN02172         75 --------ES-------LRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV  139 (461)
T ss_pred             --------hh-------hhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEE
Confidence                    00       000000000000 00111100      0001122333333333333 4555  3 67899999


Q ss_pred             EcCCCe--EEcCCC--c--EEeeCEEEEecC--cccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE----
Q psy8791         608 DPENNR--VRTQAG--S--EISYEYMIVASG--IQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV----  675 (706)
Q Consensus       608 d~~~~~--V~~~~g--~--~i~yd~lViAtG--s~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi----  675 (706)
                      ++....  |++.++  .  +..||+||||||  +.|+.|++||++++.+...    +...+.. .....+|+|+||    
T Consensus       140 ~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~i----Hs~~yr~-~~~~~gk~VvVVG~G~  214 (461)
T PLN02172        140 EPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQI----HSHNYRV-PDPFKNEVVVVIGNFA  214 (461)
T ss_pred             eecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEE----EecccCC-ccccCCCEEEEECCCc
Confidence            986554  444332  2  467999999999  6899999999875443211    1111211 112367899999    


Q ss_pred             -cHHHHHHHHHHHhhh
Q psy8791         676 -SPEIRAKAYDLTKRK  690 (706)
Q Consensus       676 -G~E~A~~l~~~~~~~  690 (706)
                       |+|+|.+|+..++++
T Consensus       215 Sg~diA~~L~~~a~~V  230 (461)
T PLN02172        215 SGADISRDIAKVAKEV  230 (461)
T ss_pred             CHHHHHHHHHHhCCeE
Confidence             999999999887653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=6.3e-12  Score=128.70  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=70.7

Q ss_pred             CCcEEEeceEEEEEcCC--CeEEcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccE
Q psy8791         595 SGATWVKDKIVSFDPEN--NRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQY  672 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~--~~V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v  672 (706)
                      .++++...+|.+++...  -.|++++++ +++++||||||+.++.|.+||..++.......+..++.      ....|+|
T Consensus        74 ~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg------~~~~k~v  146 (305)
T COG0492          74 FGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG------FFKGKDV  146 (305)
T ss_pred             cCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc------cccCCeE
Confidence            58888889999998875  357777775 99999999999999999999877655532222222222      2467789


Q ss_pred             EEE-----cHHHHHHHHHHHhhhhhhhccccccccccc
Q psy8791         673 QLV-----SPEIRAKAYDLTKRKMKKEAQWIRFQEKLK  705 (706)
Q Consensus       673 vVi-----G~E~A~~l~~~~~~~~~~~~~~~~~~~~~~  705 (706)
                      +||     ++|.|-.|+.++     ++...|+++++++
T Consensus       147 ~ViGgG~sAve~Al~L~~~a-----~~Vtlv~r~~~~r  179 (305)
T COG0492         147 VVIGGGDSAVEEALYLSKIA-----KKVTLVHRRDEFR  179 (305)
T ss_pred             EEEcCCHHHHHHHHHHHHhc-----CeEEEEecCcccC
Confidence            999     566666665554     3467777776665

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.33  E-value=9.4e-11  Score=125.72  Aligned_cols=140  Identities=9%  Similarity=-0.024  Sum_probs=98.9

Q ss_pred             HHcCCCCCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc--eEEeecEEEECCC
Q psy8791         243 RKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT--ERLPYAIMHVTPP  320 (706)
Q Consensus       243 ~~~g~~~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g--~~i~~D~vI~a~G  320 (706)
                      .+.|.    +|+++...+..++..++.+.+.+.+++.|++++++++|.+++.+++.+..+...++  ..+++|.+|+|+|
T Consensus       240 ~~LG~----~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtG  315 (422)
T PRK05329        240 EALGC----PVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATG  315 (422)
T ss_pred             HHHCC----CEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCC
Confidence            44564    39999888888876788899999999999999999999999866655544333333  4689999999999


Q ss_pred             CCchhhhh-----------cCCCC--------------C----CCCceeeCcccccc------CCCCCEEEccccCCCCC
Q psy8791         321 MGPVPELA-----------TSRLV--------------D----QSGYVNVDKATLQH------VKYSNVFAIGDCSNLPT  365 (706)
Q Consensus       321 ~~~~~~~~-----------~~~l~--------------~----~~G~i~vd~~~l~~------~~~~~Ifa~GD~~~~~~  365 (706)
                      ..+..-+.           ++.+.              .    ..=.+.||+ .|+.      +..+||||+|++...++
T Consensus       316 rf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~-~~~p~~~~g~~~~~nl~a~G~vl~g~d  394 (422)
T PRK05329        316 SFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDA-TLRPLDSQGGPVIENLYAAGAVLGGYD  394 (422)
T ss_pred             CcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECC-CcCcccCCCCeeccceEEeeehhcCCc
Confidence            87653321           00110              0    011266776 4664      34799999999999876


Q ss_pred             Cc----hHHHHHHhHHHHHHHHHHHH
Q psy8791         366 SK----TAAAVAGQCKVVYDNLSAVM  387 (706)
Q Consensus       366 ~~----~~~~a~~qg~~~a~ni~~~l  387 (706)
                      +.    -...|...|-.++++|.+..
T Consensus       395 ~~~~~~g~Gva~~ta~~a~~~~~~~~  420 (422)
T PRK05329        395 PIREGCGSGVALATALHAAEQIAEEA  420 (422)
T ss_pred             hHHhCCCchhHHHHHHHHHHHHHHhh
Confidence            52    12367788888888887653

>TIGR03452 mycothione_red mycothione reductase

Probab=99.32  E-value=2.2e-12  Score=141.76  Aligned_cols=181  Identities=13%  Similarity=0.085  Sum_probs=104.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .||+||||+|+||..+|.+  ..  +.+|+|||++.           .||+| ++..|.|.|.|+..+..........  
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~--g~~V~lie~~~-----------~GGtC-~n~GCiPsK~l~~~a~~~~~~~~~~--   63 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FA--DKRIAIVEKGT-----------FGGTC-LNVGCIPTKMFVYAAEVAQSIGESA--   63 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HC--CCeEEEEeCCC-----------CCCee-eccCccchHHHHHHHHHHHHHHHhh--
Confidence            5899999999999988543  34  78999999743           13433 4566678888777654332211100  


Q ss_pred             CCceEEEeeecceecCCCcccccCccccccccccc--ccccccc-hhhhc---cCCcEEEeceEEEEEcCCCeEEcCCCc
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKK--LSDSRRP-MKSVL---PSGATWVKDKIVSFDPENNRVRTQAGS  620 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~---~~gv~~~~~~v~~id~~~~~V~~~~g~  620 (706)
                       .+.+.        ...    ....|..+......  .+.+... .....   ..||+++.+++..++  .++|.+.+|+
T Consensus        64 -~~g~~--------~~~----~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~V~~~~g~  128 (452)
T TIGR03452        64 -RLGID--------AEI----DSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG--PRTLRTGDGE  128 (452)
T ss_pred             -ccCee--------CCC----CccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec--CCEEEECCCc
Confidence             00100        000    00011111111101  1111111 11111   159999999988885  4678888888


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +++||+||||||++|..|++++..    ..    .+.+..........+++++||     |+|+|..|+++..
T Consensus       129 ~~~~d~lIiATGs~p~~p~~~~~~----~~----~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~  193 (452)
T TIGR03452       129 EITGDQIVIAAGSRPYIPPAIADS----GV----RYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGT  193 (452)
T ss_pred             EEEeCEEEEEECCCCCCCCCCCCC----CC----EEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            899999999999999887643321    10    112222222333457899999     8999998876643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.28  E-value=1.2e-11  Score=138.19  Aligned_cols=158  Identities=18%  Similarity=0.159  Sum_probs=99.4

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      ..++||+|||||+||++||..+++.  +.+++||++.            .||.+.....   +                 
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~--G~~v~li~~~------------~GG~~~~~~~---~-----------------  255 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARK--GLRTAMVAER------------IGGQVKDTVG---I-----------------  255 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecC------------CCCccccCcC---c-----------------
Confidence            4578999999999999999999997  8999999742            1222110000   0                 


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEE-eceEEEEEcCCC--eEEcCCCc
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWV-KDKIVSFDPENN--RVRTQAGS  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~-~~~v~~id~~~~--~V~~~~g~  620 (706)
                                      +      ....++     .....++...+.+.+. .|++++ ..+|+.|+.+..  .|.+.+|+
T Consensus       256 ----------------~------~~~~~~-----~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~  308 (515)
T TIGR03140       256 ----------------E------NLISVP-----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGE  308 (515)
T ss_pred             ----------------c------cccccC-----CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCC
Confidence                            0      000000     0011122233333332 588885 468999987653  56677888


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .+.||+||+|||+.++.|++||..+....     ..............+++|+||     |+|+|..|+.+.+
T Consensus       309 ~i~~d~lIlAtGa~~~~~~ipG~~~~~~~-----~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~  376 (515)
T TIGR03140       309 VLKAKSVIVATGARWRKLGVPGEKEYIGK-----GVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVR  376 (515)
T ss_pred             EEEeCEEEECCCCCcCCCCCCCHHHcCCC-----eEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCc
Confidence            89999999999999999999996532211     111111111122357899999     9999999987654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.26  E-value=1.8e-11  Score=136.81  Aligned_cols=157  Identities=17%  Similarity=0.138  Sum_probs=100.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..+||+|||||+||++||..+++.  +.+++||++..            ||.+..... .                    
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~--G~~v~li~~~~------------GG~~~~~~~-~--------------------  254 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARK--GIRTGIVAERF------------GGQVLDTMG-I--------------------  254 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC------------CCeeeccCc-c--------------------
Confidence            468999999999999999999988  89999997521            222110000 0                    


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEE-eceEEEEEcCC--CeEEcCCCcE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWV-KDKIVSFDPEN--NRVRTQAGSE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~-~~~v~~id~~~--~~V~~~~g~~  621 (706)
                                     +.      .+.++     .....++...+...++ .++++. ..+|++|+++.  ..|.+.+|++
T Consensus       255 ---------------~~------~~~~~-----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~  308 (517)
T PRK15317        255 ---------------EN------FISVP-----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAV  308 (517)
T ss_pred             ---------------cc------cCCCC-----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCE
Confidence                           00      00000     0111223333333333 578885 56899998863  3567778889


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||+|||++++.|++||.+++...     ..............+|+|+||     |+|+|..|+.+++
T Consensus       309 i~a~~vViAtG~~~r~~~ipG~~~~~~~-----~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~  375 (517)
T PRK15317        309 LKAKTVILATGARWRNMNVPGEDEYRNK-----GVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVK  375 (517)
T ss_pred             EEcCEEEECCCCCcCCCCCCCHHHhcCc-----eEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            9999999999999999999997543221     111111111122357899999     9999999887654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.22  E-value=1.2e-11  Score=136.92  Aligned_cols=191  Identities=16%  Similarity=0.166  Sum_probs=95.5

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc-----
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI-----  542 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~-----  542 (706)
                      ++|+|||||++||++|+.|++.  +.+++++|++++..          |                   .|.....     
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~iG----------G-------------------~W~~~~~~~~g~   50 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDDIG----------G-------------------LWRYTENPEDGR   50 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSSSS----------G-------------------GGCHSTTCCCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCCCC----------c-------------------cCeeCCcCCCCc
Confidence            4799999999999999999988  89999999988753          2                   2211100     


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCcccccccccccccc---cccchhhhccC-CcEEEeceEEEEEcCC-------
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSD---SRRPMKSVLPS-GATWVKDKIVSFDPEN-------  611 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-gv~~~~~~v~~id~~~-------  611 (706)
                      .+...+..       +........+....++.-.....+.++   +...|.+.+.. ..--++++|++|.+..       
T Consensus        51 ~~~y~sl~-------~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~  123 (531)
T PF00743_consen   51 SSVYDSLH-------TNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK  123 (531)
T ss_dssp             GGGSTT-B--------SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE
T ss_pred             cccccceE-------EeeCchHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce
Confidence            00000000       011111111111111111111112222   33333333331 1112567888886532       


Q ss_pred             CeEEcC-CC--cEEeeCEEEEecCc--ccCccC--CCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHH
Q psy8791         612 NRVRTQ-AG--SEISYEYMIVASGI--QMYYDR--VKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEI  679 (706)
Q Consensus       612 ~~V~~~-~g--~~i~yd~lViAtGs--~~~~p~--i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~  679 (706)
                      ..|++. +|  ++-.||+||+|||.  .|++|.  +||++.+.+..    -+...+ ......++|+|+||     |+++
T Consensus       124 W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i----~HS~~y-r~~~~f~gKrVlVVG~g~Sg~DI  198 (531)
T PF00743_consen  124 WEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEI----IHSKDY-RDPEPFKGKRVLVVGGGNSGADI  198 (531)
T ss_dssp             EEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEE----EEGGG---TGGGGTTSEEEEESSSHHHHHH
T ss_pred             EEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeE----EccccC-cChhhcCCCEEEEEeCCHhHHHH
Confidence            345554 34  24579999999996  688884  89998765532    122222 22334578999999     9999


Q ss_pred             HHHHHHHHhhh--hhhhccccccc
Q psy8791         680 RAKAYDLTKRK--MKKEAQWIRFQ  701 (706)
Q Consensus       680 A~~l~~~~~~~--~~~~~~~~~~~  701 (706)
                      |.+++..++++  ..|...||-++
T Consensus       199 a~el~~~a~~v~~s~R~~~wv~pr  222 (531)
T PF00743_consen  199 AVELSRVAKKVYLSTRRGAWVLPR  222 (531)
T ss_dssp             HHHHTTTSCCEEEECC--------
T ss_pred             HHHHHHhcCCeEEEEecccccccc
Confidence            99998877663  35666676543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.21  E-value=4e-12  Score=124.22  Aligned_cols=78  Identities=31%  Similarity=0.501  Sum_probs=54.9

Q ss_pred             CCcEE-EeceEEEEEcCCCeE----------EcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccch
Q psy8791         595 SGATW-VKDKIVSFDPENNRV----------RTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTV  663 (706)
Q Consensus       595 ~gv~~-~~~~v~~id~~~~~V----------~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~  663 (706)
                      .++++ +.+++.+|+...+.+          ...++.++.||+||||||+.|+.|++||.+ ..   ...+...+.....
T Consensus        71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~-~~---~~~~~~~~~~~~~  146 (201)
T PF07992_consen   71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEE-VA---YFLRGVDDAQRFL  146 (201)
T ss_dssp             HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTT-TE---CBTTSEEHHHHHH
T ss_pred             ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCc-cc---ccccccccccccc
Confidence            58888 778999999988842          234567899999999999999999999973 11   1112233333333


Q ss_pred             hhhccCccEEEEc
Q psy8791         664 TWEQKHKQYQLVS  676 (706)
Q Consensus       664 ~~~~~~k~vvViG  676 (706)
                      .....+++|+|||
T Consensus       147 ~~~~~~~~v~VvG  159 (201)
T PF07992_consen  147 ELLESPKRVAVVG  159 (201)
T ss_dssp             THSSTTSEEEEES
T ss_pred             ccccccccccccc
Confidence            4444566899999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.18  E-value=2.2e-11  Score=119.14  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=51.5

Q ss_pred             CCcEE-EeceEEEEEcCCC--eEEcCCCcEEeeCEEEEecCc--ccCccCCCCchhhhcccccccccccCccchhhhccC
Q psy8791         595 SGATW-VKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGI--QMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKH  669 (706)
Q Consensus       595 ~gv~~-~~~~v~~id~~~~--~V~~~~g~~i~yd~lViAtGs--~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (706)
                      .++++ ++.+|+++..+..  .|++.+++++.+|+||+|||.  .|++|.+||..  ...     .+............+
T Consensus        95 ~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~--~~~-----~~h~~~~~~~~~~~~  167 (203)
T PF13738_consen   95 FGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSA--FRP-----IIHSADWRDPEDFKG  167 (203)
T ss_dssp             TTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGG--CSE-----EEEGGG-STTGGCTT
T ss_pred             cCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccc--ccc-----eEehhhcCChhhcCC
Confidence            46666 4578999987654  678888889999999999995  88888899911  111     112211122223467


Q ss_pred             ccEEEE-----cHHHHHHHHHHHhhhhhhhcccccc
Q psy8791         670 KQYQLV-----SPEIRAKAYDLTKRKMKKEAQWIRF  700 (706)
Q Consensus       670 k~vvVi-----G~E~A~~l~~~~~~~~~~~~~~~~~  700 (706)
                      |+|+||     |+|+|..|.+.+     ++..|+.+
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~g-----~~V~~~~R  198 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKAG-----KSVTLVTR  198 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTTC-----SEEEEEES
T ss_pred             CcEEEEcChHHHHHHHHHHHhhC-----CEEEEEec
Confidence            899999     666666555443     45555443

...

>PRK12831 putative oxidoreductase; Provisional

Probab=99.13  E-value=8.1e-11  Score=129.40  Aligned_cols=152  Identities=16%  Similarity=0.202  Sum_probs=90.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..++|+|||||+||+++|..|+++  +.+|+|+|+.+..          ||.+...   +|-                  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~--G~~V~v~e~~~~~----------GG~l~~g---ip~------------------  185 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEP----------GGVLVYG---IPE------------------  185 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCC----------CCeeeec---CCC------------------
Confidence            457999999999999999999998  8999999975542          2221100   000                  


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccccccccccc-chhhhccCCcEEEeceEEEEEcCCCeEEcCCC-cEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR-PMKSVLPSGATWVKDKIVSFDPENNRVRTQAG-SEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g-~~i~  623 (706)
                                           +.           .+.+++.. ....+...|+++..++...     +.+.+++. +.+.
T Consensus       186 ---------------------~~-----------l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~~~~~~~~~  228 (464)
T PRK12831        186 ---------------------FR-----------LPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTIDELLEEEG  228 (464)
T ss_pred             ---------------------cc-----------CCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCHHHHHhccC
Confidence                                 00           00011111 1222233688886665331     23444343 3467


Q ss_pred             eCEEEEecCc-ccCccCCCCchhhhcccccccccccC------cc--chhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         624 YEYMIVASGI-QMYYDRVKGGTTSLEDRGKMRGVSDG------FS--TVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       624 yd~lViAtGs-~~~~p~i~G~~~~~~~~~~~~~~~~~------~~--~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ||+||||||+ .|+.+++||.+  ...+.....++..      +.  .......+++|+||     |+|+|..+.++..+
T Consensus       229 ~d~viiAtGa~~~~~l~ipG~~--~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~  306 (464)
T PRK12831        229 FDAVFIGSGAGLPKFMGIPGEN--LNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE  306 (464)
T ss_pred             CCEEEEeCCCCCCCCCCCCCcC--CcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE
Confidence            9999999999 68889999975  2222222222111      00  00112357899999     88988888877643

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.12  E-value=3e-09  Score=108.83  Aligned_cols=66  Identities=11%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             EeCCCcCCC----chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCC
Q psy8791         256 CTGMGVLFP----SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       256 ~~~~~~~~~----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~  322 (706)
                      .....++||    ...+.+.+.+++++.||+++++++|.+++.++....+ .+.+|+++.||.+|+|+|-.
T Consensus        97 e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l-~t~~g~~i~~d~lilAtGG~  166 (408)
T COG2081          97 EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRL-DTSSGETVKCDSLILATGGK  166 (408)
T ss_pred             EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEE-EcCCCCEEEccEEEEecCCc
Confidence            344556676    3567788889999999999999999999987644444 45578899999999999943

>KOG1346|consensus

Probab=99.10  E-value=2.8e-10  Score=114.76  Aligned_cols=184  Identities=16%  Similarity=0.239  Sum_probs=109.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ++...+|||+|.+..++++.++.++++.++.+|..++..+|                +++||     |++.|--.+-.+.
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY----------------mRPPL-----SKELW~~~dpn~~  235 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY----------------MRPPL-----SKELWWYGDPNSA  235 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc----------------cCCCc-----chhceecCCCChh
Confidence            45568999999999999999999988899999988776554                34454     2233311111000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEec-eEEEEEcCCCeEEcCCCcEEee
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~y  624 (706)
                       ..     |.+..+-...+..++.|...++.     .    .++.....-||.+++| +|+.||.+.+.|++.||.+|.|
T Consensus       236 -k~-----lrfkqwsGkeRsiffepd~Ffvs-----p----eDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~Y  300 (659)
T KOG1346|consen  236 -KK-----LRFKQWSGKERSIFFEPDGFFVS-----P----EDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGY  300 (659)
T ss_pred             -hh-----eeecccCCccceeEecCCcceeC-----h----hHCcccccCceEEEeccceEEeecccCeEEecCCcEeeh
Confidence             00     01111222222222222111111     0    1111122247888877 6999999999999999999999


Q ss_pred             CEEEEecCcccCccCCCCchhhhccc----ccccccccCcc-chhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         625 EYMIVASGIQMYYDRVKGGTTSLEDR----GKMRGVSDGFS-TVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       625 d~lViAtGs~~~~p~i~G~~~~~~~~----~~~~~~~~~~~-~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      |+++||||.+|...+  -+++....+    ..++.. ..+. ........++|.||     |.|+|..|.+...
T Consensus       301 dkcLIATG~~Pk~l~--~~~~A~~evk~kit~fr~p-~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r  371 (659)
T KOG1346|consen  301 DKCLIATGVRPKKLQ--VFEEASEEVKQKITYFRYP-ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYR  371 (659)
T ss_pred             hheeeecCcCcccch--hhhhcCHHhhhheeEEecc-hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhh
Confidence            999999999998543  222222211    111111 1111 12222345789999     9999999988765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.07  E-value=1.4e-10  Score=127.39  Aligned_cols=149  Identities=15%  Similarity=0.147  Sum_probs=89.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.++|+|||+|+||+++|..|++.  +.+|+|||+++...          |.....   .|-                  
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~--G~~V~vie~~~~~G----------G~l~~g---ip~------------------  178 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKA--GHSVTVFEALHKPG----------GVVTYG---IPE------------------  178 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCC----------cEeeec---CCC------------------
Confidence            457999999999999999999987  88999999865421          111000   000                  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccc-cchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEee
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSR-RPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~y  624 (706)
                                                       .....++. .....+...|+++..++++     .+.|.+.+. ...|
T Consensus       179 ---------------------------------~~~~~~~~~~~~~~l~~~gv~~~~~~~v-----~~~v~~~~~-~~~y  219 (449)
T TIGR01316       179 ---------------------------------FRLPKEIVVTEIKTLKKLGVTFRMNFLV-----GKTATLEEL-FSQY  219 (449)
T ss_pred             ---------------------------------ccCCHHHHHHHHHHHHhCCcEEEeCCcc-----CCcCCHHHH-HhhC
Confidence                                             00000111 1122233468998777643     234555443 3579


Q ss_pred             CEEEEecCc-ccCccCCCCchhhhcccccccccccCccc---------hhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         625 EYMIVASGI-QMYYDRVKGGTTSLEDRGKMRGVSDGFST---------VTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       625 d~lViAtGs-~~~~p~i~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      |+||||||+ .|..|++||.+  ...+.....++.....         ......+++|+||     |+|+|..+.++..
T Consensus       220 d~viiAtGa~~p~~~~ipG~~--~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~  296 (449)
T TIGR01316       220 DAVFIGTGAGLPKLMNIPGEE--LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGA  296 (449)
T ss_pred             CEEEEeCCCCCCCcCCCCCCC--CCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            999999998 68888999975  2222222222111000         0011256899999     8899988877664

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.06  E-value=1.1e-09  Score=119.13  Aligned_cols=160  Identities=17%  Similarity=0.207  Sum_probs=104.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCe-EEEEcCCCCc-------ccC------ccc----ccccC---ccccCcc
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQ-VSIVEPTDDH-------YYQ------PMF----TLIGG---GMKKLSD   85 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~-Vtlie~~~~~-------~~~------p~~----~~~~~---~~~~~~~   85 (706)
                      ....++|+|||||++||++|++|++.  +.. ++++|+++..       .|.      |.+    +..+.   .......
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~   82 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA   82 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence            34568999999999999999999999  666 9999999641       121      111    11110   0000000


Q ss_pred             -cccccccccC-C----CcEEEE-ceeEEEEcCCC--EEEeCCCeE--EEecEEEEccc--cccccCCCCCCcccccccc
Q psy8791          86 -SRRPMKSVLP-S----GATWVK-DKIVSFDPENN--RVRTQAGSE--ISYEYMIVASG--IQMYYDRVKGPSALINALG  152 (706)
Q Consensus        86 -~~~~~~~~~~-~----~v~~i~-~~v~~id~~~~--~v~~~~g~~--~~yd~lviAtG--~~~~~~~~~g~~~~~~~~~  152 (706)
                       +...+...+. +    .+++.. .++...+.+.+  +|+++++.+  +.+|+||+|||  +.|+.|.++|.        
T Consensus        83 ~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~--------  154 (443)
T COG2072          83 EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGL--------  154 (443)
T ss_pred             cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCc--------
Confidence             0000111111 2    233322 23334444333  577777755  55999999999  57788888884        


Q ss_pred             cccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhcc
Q psy8791         153 HCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQ  212 (706)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~  212 (706)
                                  ..|.++.+|+.+    +.+..+..+|+|..+....++.++...+....
T Consensus       155 ------------~~f~g~~~HS~~----~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~g  198 (443)
T COG2072         155 ------------DEFKGRILHSAD----WPNPEDLRGKRVLVIGAGASAVDIAPELAEVG  198 (443)
T ss_pred             ------------cCCCceEEchhc----CCCccccCCCeEEEECCCccHHHHHHHHHhcC
Confidence                        357788888776    77778888889999999999999988888765

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.05  E-value=2e-10  Score=117.41  Aligned_cols=147  Identities=18%  Similarity=0.295  Sum_probs=93.5

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCC----------
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSG----------  534 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~----------  534 (706)
                      |.++||+|||||+||+.||..+.++  +.+|+|||+++...-..  -..+||.|+..+... .+.++..=          
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~--G~~V~lid~~~k~GrKi--l~sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sa   75 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKA--GRRVLLIDKGPKLGRKI--LMSGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSA   75 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhc--CCEEEEEecCcccccee--EecCCCCcccccccc-HHHHHHhCCCcchHHHHH
Confidence            3568999999999999999999998  89999999988765322  235788888877655 33333221          


Q ss_pred             -cccccccccccCCCceEEEeeecceecCCCcccccCcccccccccccc----cccccchhh-hccCCcEE-EeceEEEE
Q psy8791         535 -ATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKL----SDSRRPMKS-VLPSGATW-VKDKIVSF  607 (706)
Q Consensus       535 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~gv~~-~~~~v~~i  607 (706)
                       ..|.+.|+.++..++++.      +.+.+            .+.+++.    +++.+.+.. +.+.||++ .+.+|.+|
T Consensus        76 l~~ft~~d~i~~~e~~Gi~------~~e~~------------~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v  137 (408)
T COG2081          76 LARFTPEDFIDWVEGLGIA------LKEED------------LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSV  137 (408)
T ss_pred             HHhCCHHHHHHHHHhcCCe------eEEcc------------CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeE
Confidence             112333433333333321      11111            1111221    222222222 22369998 67899999


Q ss_pred             EcCC--CeEEcCCCcEEeeCEEEEecCcc
Q psy8791         608 DPEN--NRVRTQAGSEISYEYMIVASGIQ  634 (706)
Q Consensus       608 d~~~--~~V~~~~g~~i~yd~lViAtGs~  634 (706)
                      +.+.  -.+.+.+|+++.+|.||||||..
T Consensus       138 ~~~~~~f~l~t~~g~~i~~d~lilAtGG~  166 (408)
T COG2081         138 EKDDSGFRLDTSSGETVKCDSLILATGGK  166 (408)
T ss_pred             EecCceEEEEcCCCCEEEccEEEEecCCc
Confidence            8875  46788889899999999999954

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.05  E-value=3.9e-10  Score=123.66  Aligned_cols=146  Identities=14%  Similarity=0.215  Sum_probs=93.1

Q ss_pred             HHHHHHHhhcCCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCcccccccccccCCCceEEEeeecce
Q psy8791         481 SMAAKFTSRLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSI  559 (706)
Q Consensus       481 ~~a~~l~~~~~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (706)
                      +||.+|++..++.+|+|||+++++.|.|. ++.+.+|......                                     
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~-------------------------------------   43 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRN-------------------------------------   43 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHH-------------------------------------
Confidence            47889998877899999999998887763 4433333211000                                     


Q ss_pred             ecCCCcccccCcccccccccccccccccchhhh-ccCCcEE-EeceEEEEEcCCCeEEcCC---CcEEe--eCEEEEecC
Q psy8791         560 VEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATW-VKDKIVSFDPENNRVRTQA---GSEIS--YEYMIVASG  632 (706)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~-~~~~v~~id~~~~~V~~~~---g~~i~--yd~lViAtG  632 (706)
                                             +.+......+ ...|+++ ++++|+.||+++++|.+.+   ++++.  ||+||||||
T Consensus        44 -----------------------~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG  100 (427)
T TIGR03385        44 -----------------------KLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPG  100 (427)
T ss_pred             -----------------------HcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCC
Confidence                                   0011112233 2358888 4779999999999887653   45778  999999999


Q ss_pred             cccCccCCCCchhhhcccccccccccCccchhh--hccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         633 IQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTW--EQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       633 s~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ++|..|++||++  ...+...+...+.......  ...+++|+||     |+|+|..|++...
T Consensus       101 ~~p~~~~i~G~~--~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~  161 (427)
T TIGR03385       101 ASPIVPNIEGIN--LDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGK  161 (427)
T ss_pred             CCCCCCCCCCcC--CCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            999999999975  1222222221111111111  1356889999     8898888876543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG1399|consensus

Probab=99.01  E-value=1.4e-09  Score=116.70  Aligned_cols=188  Identities=16%  Similarity=0.067  Sum_probs=101.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .++|+|||||+|||.+|+.|++.  +.+++++|+.+...-.+.+.....      ..                  .-+..
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~--g~~v~vfEr~~~iGGlW~y~~~~~------~~------------------~ss~Y   59 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLRE--GHEVVVFERTDDIGGLWKYTENVE------VV------------------HSSVY   59 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHC--CCCceEEEecCCccceEeecCccc------cc------------------ccchh
Confidence            46899999999999999999998  899999999877541111100000      00                  00000


Q ss_pred             CCceEEEeeecceecCCCcccccCccccc-cccccccccc---ccchhhhccCCcEE-EeceEEEEEcCC---CeEEcCC
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLI-GGGMKKLSDS---RRPMKSVLPSGATW-VKDKIVSFDPEN---NRVRTQA  618 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~gv~~-~~~~v~~id~~~---~~V~~~~  618 (706)
                      .+.     .+|  +.+.-..+....++.. .....+..++   ...+++.+.....+ ++.+|..+++..   ..|.+.+
T Consensus        60 ~~l-----~tn--~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~  132 (448)
T KOG1399|consen   60 KSL-----RTN--LPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKD  132 (448)
T ss_pred             hhh-----hcc--CChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEec
Confidence            000     000  0000000111111111 1111122222   22333333322233 566677777654   3565544


Q ss_pred             C----cEEeeCEEEEecCcc--cCccCCCCc--hhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHH
Q psy8791         619 G----SEISYEYMIVASGIQ--MYYDRVKGG--TTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYD  685 (706)
Q Consensus       619 g----~~i~yd~lViAtGs~--~~~p~i~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~  685 (706)
                      +    ++.-||.|++|||..  |+.|.+||.  +.+.+.     -.++..-........|+|+||     |.|++-.++.
T Consensus       133 ~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~-----~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~  207 (448)
T KOG1399|consen  133 NGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGK-----IIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLR  207 (448)
T ss_pred             CCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCc-----ceehhhccCcccccCceEEEECCCccHHHHHHHHHH
Confidence            3    477899999999986  888989884  343332     222211111222356889999     9999999888


Q ss_pred             HHhhhhh
Q psy8791         686 LTKRKMK  692 (706)
Q Consensus       686 ~~~~~~~  692 (706)
                      .++++..
T Consensus       208 ~ak~v~~  214 (448)
T KOG1399|consen  208 VAKEVHL  214 (448)
T ss_pred             hccCcce
Confidence            8876543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.00  E-value=1.9e-08  Score=106.66  Aligned_cols=130  Identities=12%  Similarity=0.019  Sum_probs=91.2

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc--eEEeecEEEECCCCC-chhhhhc
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT--ERLPYAIMHVTPPMG-PVPELAT  329 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g--~~i~~D~vI~a~G~~-~~~~~~~  329 (706)
                      |..+-..|.-++...+.+.+.+.++++|++++.+++|.++..+++.++.+.++++  .++.+|.+|+|+|.+ +..++.+
T Consensus       250 v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       250 LCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE  329 (419)
T ss_pred             EEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence            5555444444445788999999999999999999999998876666665554454  479999999999999 6655443


Q ss_pred             C--------CC--C--------------C----CCCceeeCccccccC----CCCCEEEccccCCCCCCc----hHHHHH
Q psy8791         330 S--------RL--V--------------D----QSGYVNVDKATLQHV----KYSNVFAIGDCSNLPTSK----TAAAVA  373 (706)
Q Consensus       330 ~--------~l--~--------------~----~~G~i~vd~~~l~~~----~~~~Ifa~GD~~~~~~~~----~~~~a~  373 (706)
                      .        +|  .              +    -.=.|.||+ .|+..    -++|+||+|-+....++.    -...|+
T Consensus       330 l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~-~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai  408 (419)
T TIGR03378       330 FDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDA-QLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAV  408 (419)
T ss_pred             cCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEcc-ccCccCCCcccccceEechhhcCCChHhcCCCchhHH
Confidence            2        11  0              1    011267887 57732    279999999888876652    123567


Q ss_pred             HhHHHHHHHH
Q psy8791         374 GQCKVVYDNL  383 (706)
Q Consensus       374 ~qg~~~a~ni  383 (706)
                      ..|-.+|++|
T Consensus       409 ~Ta~~aa~~i  418 (419)
T TIGR03378       409 STALHAAEQI  418 (419)
T ss_pred             HHHHHHHHhh
Confidence            7777777776

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.00  E-value=4.2e-10  Score=132.54  Aligned_cols=149  Identities=17%  Similarity=0.165  Sum_probs=92.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .++|+|||||+||++||..|++.  +++|+|+|+.+..          ||.....   +|                    
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~~----------GG~l~yG---IP--------------------  350 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHDL----------GGVLRYG---IP--------------------  350 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCCC----------CceEEcc---CC--------------------
Confidence            56899999999999999999998  8999999986543          2321100   00                    


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccc-cchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEeeC
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSR-RPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYE  625 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd  625 (706)
                                                     ..+-..++. .....+...|++|..+....     +.+++++.....||
T Consensus       351 -------------------------------~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-----~dit~~~l~~~~yD  394 (944)
T PRK12779        351 -------------------------------EFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-----KTATLEDLKAAGFW  394 (944)
T ss_pred             -------------------------------CCcChHHHHHHHHHHHHhhcCeEEEeEEec-----cEEeHHHhccccCC
Confidence                                           000001111 12233334689886665432     34666666667899


Q ss_pred             EEEEecCc-ccCccCCCCchhhhcccccccccccCccc----------hhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         626 YMIVASGI-QMYYDRVKGGTTSLEDRGKMRGVSDGFST----------VTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       626 ~lViAtGs-~~~~p~i~G~~~~~~~~~~~~~~~~~~~~----------~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +||||||+ .|+.++|||.+  ..++.....++.....          ......+|+|+||     |+|+|..+.++..
T Consensus       395 AV~LAtGA~~pr~l~IpG~d--l~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga  471 (944)
T PRK12779        395 KIFVGTGAGLPTFMNVPGEH--LLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGG  471 (944)
T ss_pred             EEEEeCCCCCCCcCCCCCCc--CcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            99999999 58888999964  3332222222211000          0011256899999     7888888877664

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.98  E-value=5.8e-10  Score=118.80  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .++|+|||+|++|+++|..|++.  +.+|++||+.+..
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACL--GYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            45899999999999999999987  7899999986643

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.98  E-value=1.2e-09  Score=119.49  Aligned_cols=155  Identities=26%  Similarity=0.349  Sum_probs=97.2

Q ss_pred             ccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCCCc
Q psy8791         470 LGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSY  549 (706)
Q Consensus       470 ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  549 (706)
                      ++|||+|.||+++|..+++..++.+|+++..++...|.                                          
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~------------------------------------------   38 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY------------------------------------------   38 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC------------------------------------------
Confidence            58999999999999999998888899888765543322                                          


Q ss_pred             eEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEE-EeceEEEEEcCCCeEEcCCCcEEeeCEEE
Q psy8791         550 TFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATW-VKDKIVSFDPENNRVRTQAGSEISYEYMI  628 (706)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~v~~id~~~~~V~~~~g~~i~yd~lV  628 (706)
                                        +++.+.++..+....+.+..........+++. ...+|+++|+++++|.+.+| ++.||+||
T Consensus        39 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~Lv   99 (415)
T COG0446          39 ------------------RCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLV   99 (415)
T ss_pred             ------------------CCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEecCCCCEEEECCC-cccccEEE
Confidence                              22222223322222222222222111246776 56789999999999999999 99999999


Q ss_pred             EecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         629 VASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       629 iAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +|||+++..++  +..  ......++...............++++|+     |+|+|..+++...+
T Consensus       100 latGa~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~  161 (415)
T COG0446         100 LATGARPRPPP--ISD--WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK  161 (415)
T ss_pred             EcCCCcccCCC--ccc--cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCe
Confidence            99999998776  222  22122222222111111111124678888     78888887776643

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.98  E-value=4.3e-10  Score=131.41  Aligned_cols=150  Identities=19%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..++|+|||||+||++||..|+++  +.+|+|+|+.+..          ||.....   +|                   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~--G~~V~v~e~~~~~----------GG~l~~g---ip-------------------  475 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEI----------GGVLKYG---IP-------------------  475 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCC----------CCeeeec---CC-------------------
Confidence            467999999999999999999998  8999999985432          2211100   00                   


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccccccccc-ccchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEee
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDS-RRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~y  624 (706)
                                                  .    ..-..++ ......+.+.||++..+...     .+.|++++.....|
T Consensus       476 ----------------------------~----~rlp~~~~~~~~~~l~~~gv~~~~~~~v-----~~~v~~~~l~~~~y  518 (752)
T PRK12778        476 ----------------------------E----FRLPKKIVDVEIENLKKLGVKFETDVIV-----GKTITIEELEEEGF  518 (752)
T ss_pred             ----------------------------C----CCCCHHHHHHHHHHHHHCCCEEECCCEE-----CCcCCHHHHhhcCC
Confidence                                        0    0000011 11222333468998766543     23455555556779


Q ss_pred             CEEEEecCc-ccCccCCCCchhhhcccccccccccCccc--------hhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         625 EYMIVASGI-QMYYDRVKGGTTSLEDRGKMRGVSDGFST--------VTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       625 d~lViAtGs-~~~~p~i~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      |+||||||+ .|+.+++||.+  ..++.....++.....        ......+++|+||     |+|+|..+.++..
T Consensus       519 davvlAtGa~~~~~l~ipG~~--~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga  594 (752)
T PRK12778        519 KGIFIASGAGLPNFMNIPGEN--SNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGA  594 (752)
T ss_pred             CEEEEeCCCCCCCCCCCCCCC--CCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCC
Confidence            999999999 58888999965  2222222222111000        0112356899999     8888888877654

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.97  E-value=1.1e-09  Score=119.22  Aligned_cols=39  Identities=31%  Similarity=0.417  Sum_probs=33.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..++|+|||||+||++||..|++..++++|+|+|+.+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            456899999999999999999875458999999997643

>KOG1399|consensus

Probab=98.97  E-value=7.6e-09  Score=111.06  Aligned_cols=36  Identities=33%  Similarity=0.480  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||+|||++|+.|.+.  |++++++||.+.
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~--g~~v~vfEr~~~   40 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLRE--GHEVVVFERTDD   40 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHC--CCCceEEEecCC
Confidence            467999999999999999999999  999999999876

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.97  E-value=6.9e-10  Score=122.49  Aligned_cols=148  Identities=16%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..++|+|||||+||+++|..|+++  +.+|+|+|+++...          |.....   .|.                  
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~--g~~V~lie~~~~~g----------G~l~~g---ip~------------------  185 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARK--GYDVTIFEARDKAG----------GLLRYG---IPE------------------  185 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCC----------cEeecc---CCC------------------
Confidence            456899999999999999999987  78999999866431          110000   000                  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccc-hhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEee
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP-MKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~y  624 (706)
                                                       .....++... ...+...|+++..++.+.     +.+.+.+. .+.|
T Consensus       186 ---------------------------------~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~~~-~~~~  226 (457)
T PRK11749        186 ---------------------------------FRLPKDIVDREVERLLKLGVEIRTNTEVG-----RDITLDEL-RAGY  226 (457)
T ss_pred             ---------------------------------ccCCHHHHHHHHHHHHHcCCEEEeCCEEC-----CccCHHHH-HhhC
Confidence                                             0000111111 122233688887665531     23334333 3789


Q ss_pred             CEEEEecCcc-cCccCCCCchhhhcccccccccccCccc---hhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         625 EYMIVASGIQ-MYYDRVKGGTTSLEDRGKMRGVSDGFST---VTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       625 d~lViAtGs~-~~~p~i~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      |+||||||+. +..+++||.+  ..++.....++.....   ......+++|+||     |+|+|..+.++.
T Consensus       227 d~vvlAtGa~~~~~~~i~G~~--~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G  296 (457)
T PRK11749        227 DAVFIGTGAGLPRFLGIPGEN--LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLG  296 (457)
T ss_pred             CEEEEccCCCCCCCCCCCCcc--CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcC
Confidence            9999999995 7777889865  2222111111111110   0111257899999     888888887664

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.96  E-value=1.6e-09  Score=125.65  Aligned_cols=146  Identities=18%  Similarity=0.200  Sum_probs=85.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..++|+|||||+||++||..|+++  +.+|+|+|+.+..          ||.....   +|-                  
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~--G~~VtV~Ek~~~~----------GG~lr~~---IP~------------------  584 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARA--GHPVTVFEREENA----------GGVVKNI---IPQ------------------  584 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCeEEEEeccccc----------Ccceeee---ccc------------------
Confidence            456899999999999999999998  8899999986653          2321100   000                  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEeeC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYE  625 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd  625 (706)
                                           ++           ...+.+......+...||++..+....+       .+++.+...||
T Consensus       585 ---------------------~R-----------lp~evL~~die~l~~~GVe~~~gt~Vdi-------~le~L~~~gYD  625 (1019)
T PRK09853        585 ---------------------FR-----------IPAELIQHDIEFVKAHGVKFEFGCSPDL-------TVEQLKNEGYD  625 (1019)
T ss_pred             ---------------------cc-----------ccHHHHHHHHHHHHHcCCEEEeCceeEE-------EhhhheeccCC
Confidence                                 00           0001111223333446899866654322       23334456799


Q ss_pred             EEEEecCccc-CccCCCCchhhhcccccccccccCc-cchhhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         626 YMIVASGIQM-YYDRVKGGTTSLEDRGKMRGVSDGF-STVTWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       626 ~lViAtGs~~-~~p~i~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                      +||||||+.+ ..+++||.++.   +.....++..+ ........+++|+||     |+|+|..+.++
T Consensus       626 aVILATGA~~~~~l~IpG~~~g---V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~Rl  690 (1019)
T PRK09853        626 YVVVAIGADKNGGLKLEGGNQN---VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRV  690 (1019)
T ss_pred             EEEECcCCCCCCCCCCCCccCC---ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhc
Confidence            9999999974 45578885421   11001111111 111122357899999     88888776655

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.94  E-value=6.3e-09  Score=111.38  Aligned_cols=79  Identities=11%  Similarity=0.120  Sum_probs=49.8

Q ss_pred             HHHHHcCCCCCcEEEEEeCCCcCCC----chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEE
Q psy8791         240 EYLRKHKKRDAAKLTYCTGMGVLFP----SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIM  315 (706)
Q Consensus       240 ~~l~~~g~~~~~~v~l~~~~~~~~~----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~v  315 (706)
                      +++.+.|..     +..+...+++|    ..++.+.+++.+++.||+++++++|.+++.+++.+..+.++++.++.+|.|
T Consensus        84 ~ff~~~Gv~-----~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v  158 (409)
T PF03486_consen   84 AFFEELGVP-----TKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV  158 (409)
T ss_dssp             HHHHHTT-------EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred             HHHHhcCCe-----EEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence            456666632     33445556665    356778889999999999999999999987655533333457789999999


Q ss_pred             EECCCCCc
Q psy8791         316 HVTPPMGP  323 (706)
Q Consensus       316 I~a~G~~~  323 (706)
                      |+|+|-.+
T Consensus       159 ILAtGG~S  166 (409)
T PF03486_consen  159 ILATGGKS  166 (409)
T ss_dssp             EE----SS
T ss_pred             EEecCCCC
Confidence            99999765

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.87  E-value=1.3e-08  Score=106.81  Aligned_cols=43  Identities=19%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF   73 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~   73 (706)
                      .+|+|+||.|+++|+.|..|.+.. ..++..+|+.+.+.|.|.+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gm   44 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGM   44 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCcc
Confidence            368999999999999999999883 5899999999998888654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.86  E-value=2.4e-09  Score=127.34  Aligned_cols=149  Identities=14%  Similarity=0.151  Sum_probs=87.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.++|+|||||+||++||..|+++  +.+|+|+|+.+..          ||.....   +|                   
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~--G~~VtV~E~~~~~----------GG~l~~g---ip-------------------  474 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKY--GVDVTVYEALHVV----------GGVLQYG---IP-------------------  474 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCC----------cceeecc---CC-------------------
Confidence            457899999999999999999998  8999999986543          2211100   00                   


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccc-cchhhhccCCcEEEeceEEEEEcCCCeEEcCCC-cEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSR-RPMKSVLPSGATWVKDKIVSFDPENNRVRTQAG-SEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g-~~i~  623 (706)
                                                  .+    ....++. .....+.+.||++..+.+...     .+++.+- ....
T Consensus       475 ----------------------------~~----rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~-----~~~~~~l~~~~~  517 (1006)
T PRK12775        475 ----------------------------SF----RLPRDIIDREVQRLVDIGVKIETNKVIGK-----TFTVPQLMNDKG  517 (1006)
T ss_pred             ----------------------------cc----CCCHHHHHHHHHHHHHCCCEEEeCCccCC-----ccCHHHHhhccC
Confidence                                        00    0001111 223333446899876655422     2222221 1346


Q ss_pred             eCEEEEecCc-ccCccCCCCchhhhcccccccccccCccc---------hhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         624 YEYMIVASGI-QMYYDRVKGGTTSLEDRGKMRGVSDGFST---------VTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       624 yd~lViAtGs-~~~~p~i~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      ||+||||||+ .|+.++|||.+  +.++.....++.....         ......+|+|+||     |+|+|..+.++.
T Consensus       518 yDaViIATGa~~pr~l~IpG~~--l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlG  594 (1006)
T PRK12775        518 FDAVFLGVGAGAPTFLGIPGEF--AGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLG  594 (1006)
T ss_pred             CCEEEEecCCCCCCCCCCCCcC--CCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            9999999999 48889999964  3333222222211100         0112357899999     777776666554

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.84  E-value=7.6e-09  Score=123.87  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||+|||||+||++||..+++.  +.+|+|||+++.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~--G~~V~liD~~~~  197 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARA--GARVILVDEQPE  197 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence            57999999999999999999987  899999998664

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.83  E-value=2.1e-07  Score=93.77  Aligned_cols=121  Identities=13%  Similarity=0.081  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-EEEEEeC-----------CCceEEeecEEEECCCCCch--hhhhc-C
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANK-EAVFKSE-----------DKTERLPYAIMHVTPPMGPV--PELAT-S  330 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~v~~~~~-----------~~g~~i~~D~vI~a~G~~~~--~~~~~-~  330 (706)
                      ..+...+.+.+++.|++++.++.+.++..+++ .+..+..           .+..++.++.||.|+|....  ..+.+ .
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~  183 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKG  183 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence            56677777888889999999999998864332 3322111           13357999999999998766  22222 1


Q ss_pred             --------CC----CCCCCceeeCccccccCCCCCEEEccccCCC--CCC---chHHHHHHhHHHHHHHHHHHHcC
Q psy8791         331 --------RL----VDQSGYVNVDKATLQHVKYSNVFAIGDCSNL--PTS---KTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       331 --------~l----~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~--~~~---~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                              |.    .+......|+. |-++  +|++|++|=+++.  ..|   +.-..-...|+.+|+-|...+..
T Consensus       184 ~~~~~~~~g~~~~~~~~~e~~v~~~-t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~  256 (257)
T PRK04176        184 PELGIEVPGEKSMWAERGEKLVVEN-TGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK  256 (257)
T ss_pred             CCcccccCCccccccCchHHHHHhc-CCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence                    11    11122223333 3332  8999999966543  122   22223456889999999888754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.83  E-value=1.1e-08  Score=119.62  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..++|+|||||+||++||..|++.  +.+|+|+|+++.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek~~~  571 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEK  571 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEecccc
Confidence            357899999999999999999998  899999998764

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.83  E-value=3.7e-07  Score=93.49  Aligned_cols=109  Identities=9%  Similarity=0.064  Sum_probs=72.2

Q ss_pred             hCCceEEcCCceEEEeCCCCE-E--EEEe--CCCceEEeecEEEECCCCCch--hhhhcC--CC-CCCCCceeeCccccc
Q psy8791         278 GRGVDVHKGKALVEIDLANKE-A--VFKS--EDKTERLPYAIMHVTPPMGPV--PELATS--RL-VDQSGYVNVDKATLQ  347 (706)
Q Consensus       278 ~~gV~v~~~~~v~~i~~~~~~-v--~~~~--~~~g~~i~~D~vI~a~G~~~~--~~~~~~--~l-~~~~G~i~vd~~~l~  347 (706)
                      +.+|.++.+++|..++..++. +  ....  +++.++++.|.||+|||+...  +++...  .| .+++|...|+. .+.
T Consensus       290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~-dY~  368 (436)
T COG3486         290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGR-DYR  368 (436)
T ss_pred             CCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecC-cee
Confidence            356889999999999987643 2  2222  224568999999999999854  466554  23 68889999998 455


Q ss_pred             cCCC----CCEEEccccCCC---CCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         348 HVKY----SNVFAIGDCSNL---PTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       348 ~~~~----~~Ifa~GD~~~~---~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      +...    ..||+-|=+...   ..|.+.-.|.+.+     .|++.+.|...
T Consensus       369 v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa-----~I~~~L~g~~~  415 (436)
T COG3486         369 VLWDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAA-----VILNSLLGREK  415 (436)
T ss_pred             eecCCCCcceEEEecccccccccCCccchHHHHHHH-----HHHHHHhCcCC
Confidence            4332    369999966543   2344554555544     55666667654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=5.2e-09  Score=103.56  Aligned_cols=99  Identities=13%  Similarity=0.111  Sum_probs=73.3

Q ss_pred             cchhhhcc-CCcEEEec-eEEEEEcC-----CCeEEcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccC
Q psy8791         587 RPMKSVLP-SGATWVKD-KIVSFDPE-----NNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDG  659 (706)
Q Consensus       587 ~~~~~~~~-~gv~~~~~-~v~~id~~-----~~~V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~  659 (706)
                      ..+++..+ ..|++++. +++++.+.     -..|++.+|-.+..+.+|||||++.+.-.+||.+++......++.+++.
T Consensus       270 ~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDG  349 (520)
T COG3634         270 AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG  349 (520)
T ss_pred             HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCC
Confidence            33444443 46777543 56777663     2368999999999999999999999999999998876655555666543


Q ss_pred             ccchhhhccCccEEEE-----cHHHHHHHHHHHhhh
Q psy8791         660 FSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKRK  690 (706)
Q Consensus       660 ~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~~  690 (706)
                      -     ..++|+|+||     |+|.|-.|+.+...+
T Consensus       350 P-----LF~gK~VAVIGGGNSGvEAAIDLAGiv~hV  380 (520)
T COG3634         350 P-----LFKGKRVAVIGGGNSGVEAAIDLAGIVEHV  380 (520)
T ss_pred             c-----ccCCceEEEECCCcchHHHHHhHHhhhhee
Confidence            2     3478999999     999998888776543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.82  E-value=5.3e-09  Score=115.67  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..++|+|||+|+||+++|..|++.  +.+|+|||+.+.
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~  177 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARA--GHKVTVFERADR  177 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence            346899999999999999999987  789999998664

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.82  E-value=1.2e-08  Score=99.70  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             EEECCCHHHHHHHHHHHhhcCCCe-EEEEcCCCCcc------------cCccccc--c--c----------------Ccc
Q psy8791          34 LVVGGGAAGCSMAAKFTSKLGKGQ-VSIVEPTDDHY------------YQPMFTL--I--G----------------GGM   80 (706)
Q Consensus        34 vIIGgG~aGl~aA~~L~~~~~~~~-Vtlie~~~~~~------------~~p~~~~--~--~----------------~~~   80 (706)
                      +|||||++||++|.+|.++  +.+ |+|||+++...            +.|....  .  .                ...
T Consensus         1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            7999999999999999999  888 99999986511            1111100  0  0                000


Q ss_pred             ccCcccccccccccC-CCcEEEE-ceeEEEEcCCC--EEEeCCCeEEEecEEEEcccc--ccccCCCCC
Q psy8791          81 KKLSDSRRPMKSVLP-SGATWVK-DKIVSFDPENN--RVRTQAGSEISYEYMIVASGI--QMYYDRVKG  143 (706)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~v~~i~-~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~--~~~~~~~~g  143 (706)
                      ...+.+...+.++.+ .++++.. .+|+++..++.  .|++++++++.+|+||+|||.  .|+.|.+||
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TT
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccc
Confidence            001111122222222 4555433 67888877654  688888888999999999995  666666666

...

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.81  E-value=4.8e-09  Score=120.12  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      ..++|+|||+|+||++||..|+++  +++|+++|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~--Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRS--GHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhC--CCeEEEEccc
Confidence            457899999999999999999987  8999999974

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.81  E-value=1.5e-09  Score=116.26  Aligned_cols=150  Identities=18%  Similarity=0.306  Sum_probs=75.4

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCC---Cccc-------
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPS---GATW-------  537 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~---~~~~-------  537 (706)
                      |||+|||||+||+.||..+.+.  +.+|+|+|+++...-...  ..++|.|+..+.......+...   ...+       
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~--g~~V~vlE~~~~~gkKil--~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEK--GARVLVLERNKRVGKKIL--ITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHT--T--EEEE-SSSSS-HHHH--HCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCccccccee--ecCCCCccccccccchhhHhhhcccchHHHHHHHhc
Confidence            6899999999999999999887  899999999887542221  2366888887755555554443   1122       


Q ss_pred             -ccccccccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEE-EeceEEEEEcCCCe-
Q psy8791         538 -VKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATW-VKDKIVSFDPENNR-  613 (706)
Q Consensus       538 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~-~~~~v~~id~~~~~-  613 (706)
                       ...+...++.+.++.     ...++... .++       .. ....++...+...+ +.||++ ++.+|.+|..++.. 
T Consensus        77 f~~~d~~~ff~~~Gv~-----~~~~~~gr-~fP-------~s-~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~  142 (409)
T PF03486_consen   77 FSPEDLIAFFEELGVP-----TKIEEDGR-VFP-------KS-DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGV  142 (409)
T ss_dssp             S-HHHHHHHHHHTT-------EEE-STTE-EEE-------TT---HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEE
T ss_pred             CCHHHHHHHHHhcCCe-----EEEcCCCE-ECC-------CC-CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCce
Confidence             222333333333321     01111111 000       00 01112222222222 269998 57789999775544 


Q ss_pred             --EEcCCCcEEeeCEEEEecCccc
Q psy8791         614 --VRTQAGSEISYEYMIVASGIQM  635 (706)
Q Consensus       614 --V~~~~g~~i~yd~lViAtGs~~  635 (706)
                        |.+++++++.+|+||||||+.+
T Consensus       143 f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  143 FGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             EEEEETTTEEEEESEEEE----SS
T ss_pred             eEeeccCcccccCCEEEEecCCCC
Confidence              6666778999999999999765

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.79  E-value=5.3e-08  Score=103.20  Aligned_cols=72  Identities=8%  Similarity=0.081  Sum_probs=58.6

Q ss_pred             cCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceE-EeecEEEECCCCCchhhhhcCCC
Q psy8791         261 VLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTER-LPYAIMHVTPPMGPVPELATSRL  332 (706)
Q Consensus       261 ~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~-i~~D~vI~a~G~~~~~~~~~~~l  332 (706)
                      .+..+..+...+.+.+.++|++++++++|+.|+.+++.+....+.+|++ ++|+.||.|.|.-+...+...|+
T Consensus       148 giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~  220 (429)
T COG0579         148 GIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGI  220 (429)
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCC
Confidence            3333566788888888899999999999999988766455555667766 99999999999999988888776

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.79  E-value=7.3e-09  Score=118.72  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..++|+|||||+||+++|..|++.  +.+|+|+|+++.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQ  227 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            346899999999999999999988  889999998665

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.79  E-value=3.9e-07  Score=97.96  Aligned_cols=102  Identities=11%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccccc-CCCcEEEEceeE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIV  106 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~v~  106 (706)
                      ...++|+|||||+||+.||.+|.++. +++|+|+|+.+....... ..++......+.+...+...+ ..+++|.. .+ 
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgGLvR-~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g-nv-  112 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYGLIR-YGVAPDHIHVKNTYKTFDPVFLSPNYRFFG-NV-  112 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCccEEE-EeCCCCCccHHHHHHHHHHHHhhCCeEEEe-ee-
Confidence            34578999999999999999876442 899999999996432111 112222222222333333322 35666652 11 


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccccc
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                        ... ..++.++- .-.||.||+|+|+.+.
T Consensus       113 --~VG-~Dvt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        113 --HVG-VDLKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             --Eec-CccCHHHH-HhcCCEEEEEcCCCCC
Confidence              111 12222222 2379999999998854

>KOG1800|consensus

Probab=98.74  E-value=9e-08  Score=96.40  Aligned_cols=109  Identities=14%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEEceeE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIV  106 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~v~  106 (706)
                      ..+++|.|||+|+||+.+|.+|.++.+++.|+++|+.+.. |.--...+.........+.-.+..+.. ....|... | 
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP-FGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gN-v-   94 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP-FGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGN-V-   94 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc-cceeeeccCCCCcchhhHHHHHHHHhhccceEEEec-c-
Confidence            3456999999999999999999997678999999999841 110011122222222222222333333 23344321 1 


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCC
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKG  143 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g  143 (706)
                        .. ...+.+.. -+-.||.+|+|.|+. .+...|||
T Consensus        95 --~v-G~dvsl~e-L~~~ydavvLaYGa~~dR~L~IPG  128 (468)
T KOG1800|consen   95 --KV-GRDVSLKE-LTDNYDAVVLAYGADGDRRLDIPG  128 (468)
T ss_pred             --ee-cccccHHH-HhhcccEEEEEecCCCCcccCCCC
Confidence              00 11122221 133699999999985 56788999

>KOG0404|consensus

Probab=98.70  E-value=4.3e-08  Score=91.34  Aligned_cols=182  Identities=14%  Similarity=0.120  Sum_probs=102.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .+.+|+|||+|+|+..+|+.+.+.  ..+-+++|-..-..     ...+|..+...+                       
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~-----i~pGGQLtTTT~-----------------------   56 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANG-----IAPGGQLTTTTD-----------------------   56 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccC-----cCCCceeeeeec-----------------------
Confidence            345899999999999999999987  77888987521110     000111111000                       


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhh-ccCCcEEEeceEEEEEcCCCeEEc-CCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVKDKIVSFDPENNRVRT-QAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~~~v~~id~~~~~V~~-~~g~~i~  623 (706)
                                    +      ..-|.+|.-..+.    ++...++.. .+.|.+++..+|.++|...+-.++ +|.+.+.
T Consensus        57 --------------v------eNfPGFPdgi~G~----~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~  112 (322)
T KOG0404|consen   57 --------------V------ENFPGFPDGITGP----ELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVT  112 (322)
T ss_pred             --------------c------ccCCCCCcccccH----HHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecCCcee
Confidence                          0      1113333222221    122222222 225889999999999998874322 3566899


Q ss_pred             eCEEEEecCcccCccCCCCchh--hhcccccccccccCccchhhhccCccEEEE-cHHHHHHHHHHHhhhhhhhcccccc
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTT--SLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-SPEIRAKAYDLTKRKMKKEAQWIRF  700 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-G~E~A~~l~~~~~~~~~~~~~~~~~  700 (706)
                      +|.+|+|||+......+||..+  +.....+.+..++...   .....|-.+|| |-+.|.+=+.++. ++.++..-|++
T Consensus       113 ~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaa---pifrnk~laVIGGGDsA~EEA~fLt-kyaskVyii~R  188 (322)
T KOG0404|consen  113 ADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAA---PIFRNKPLAVIGGGDSAMEEALFLT-KYASKVYIIHR  188 (322)
T ss_pred             eeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcc---hhhcCCeeEEEcCcHHHHHHHHHHH-hhccEEEEEEE
Confidence            9999999999999888998732  2222122222333221   11355668888 4444443333332 34455556666


Q ss_pred             ccccc
Q psy8791         701 QEKLK  705 (706)
Q Consensus       701 ~~~~~  705 (706)
                      ++.||
T Consensus       189 rd~fR  193 (322)
T KOG0404|consen  189 RDHFR  193 (322)
T ss_pred             hhhhh
Confidence            66554

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.70  E-value=1.6e-07  Score=100.37  Aligned_cols=82  Identities=11%  Similarity=0.031  Sum_probs=62.1

Q ss_pred             CcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         250 AAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       250 ~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      ...-.+..+....+.+..+.+.+.+.+++.|++++.+++|++++.+++.++.+.+++|+ +.+|.||+|+|...+.++..
T Consensus       131 ~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~  209 (358)
T PF01266_consen  131 RIEGGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPL  209 (358)
T ss_dssp             TTEEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHT
T ss_pred             chhhhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeec
Confidence            33455555555545568899999999999999999999999999888777745666777 99999999999988876666


Q ss_pred             CCC
Q psy8791         330 SRL  332 (706)
Q Consensus       330 ~~l  332 (706)
                      .+.
T Consensus       210 ~~~  212 (358)
T PF01266_consen  210 LGL  212 (358)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.70  E-value=1.3e-07  Score=104.10  Aligned_cols=70  Identities=7%  Similarity=0.001  Sum_probs=54.0

Q ss_pred             CCCchhHHHHHHHHHHh----CC--ceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC
Q psy8791         262 LFPSPFYAEKIHDILIG----RG--VDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL  332 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~~----~g--V~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l  332 (706)
                      ...+..+...+.+.+++    .|  ++++++++|.+|+.+++....+.+++| ++.+|.||+|+|.+....+...|+
T Consensus       207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY  282 (497)
T ss_pred             EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence            34456788888888888    77  889999999999876333333344455 699999999999999888887766

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.68  E-value=1.6e-08  Score=111.94  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .++|+|||+|++|+++|..|++.  +.+|+|+|+.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~--g~~V~v~e~~~~  177 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRA--GHTVTVFEREDR  177 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCC
Confidence            36899999999999999999987  789999998664

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.68  E-value=1.1e-06  Score=88.43  Aligned_cols=119  Identities=8%  Similarity=0.013  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCC--EEEEEeCC-----------CceEEeecEEEECCCCCch--hhhhc-
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSED-----------KTERLPYAIMHVTPPMGPV--PELAT-  329 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~v~~~~~~-----------~g~~i~~D~vI~a~G~~~~--~~~~~-  329 (706)
                      ..+.+.+.+.+.+.|++++.++.+.++..+++  .+..+...           +..+++++.||.|+|....  .++.+ 
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~  179 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK  179 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence            45666777788889999999999999875443  33332221           2357999999999997765  33333 


Q ss_pred             CCC-CCC-----CCce--------eeCccccccCCCCCEEEccccCCC--CCC---chHHHHHHhHHHHHHHHHHHH
Q psy8791         330 SRL-VDQ-----SGYV--------NVDKATLQHVKYSNVFAIGDCSNL--PTS---KTAAAVAGQCKVVYDNLSAVM  387 (706)
Q Consensus       330 ~~l-~~~-----~G~i--------~vd~~~l~~~~~~~Ifa~GD~~~~--~~~---~~~~~a~~qg~~~a~ni~~~l  387 (706)
                      .++ .+.     .+-.        .|+. |-.  -+|++|++|=.++-  ..|   ++-......|+.+|+-|...+
T Consensus       180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~-t~~--~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~  253 (254)
T TIGR00292       180 IVLEDQVPKLGGEKSMWAEVAEVAIHEN-TRE--VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL  253 (254)
T ss_pred             cCcccCCcccCCchhhhhhhhHHHHHhc-cCc--ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence            222 110     0111        1111 222  28999999965542  122   222234568899999888765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.68  E-value=5.6e-07  Score=84.32  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .||+|||||++||+||++|++.  +.+|++||++-+
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls   64 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLS   64 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhC--CceEEEEEeecc
Confidence            5899999999999999999999  999999999986

>PRK13984 putative oxidoreductase; Provisional

Probab=98.65  E-value=2.3e-08  Score=114.37  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.++|+|||+|+||+++|..|+++  +.+|+|+|+++.
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~--G~~v~vie~~~~  317 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATM--GYEVTVYESLSK  317 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            467899999999999999999998  889999998664

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.53  E-value=7.7e-07  Score=97.16  Aligned_cols=76  Identities=14%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             EEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCC----ceEEeecEEEECCCCCchhhhhcC
Q psy8791         255 YCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK----TERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~----g~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      ++.+......+..+...+.+.+++.|++++.+++|.+++.+++.++....++    +.++.+|.||+|+|.+........
T Consensus       186 ~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~  265 (410)
T PRK12409        186 YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAML  265 (410)
T ss_pred             EEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHh
Confidence            3444433333456777788889999999999999999986555554432222    247899999999999987665543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.51  E-value=3.3e-07  Score=99.35  Aligned_cols=75  Identities=11%  Similarity=0.094  Sum_probs=56.2

Q ss_pred             EeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC
Q psy8791         256 CTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL  332 (706)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l  332 (706)
                      ..+......++.+.+.+.+.+++.|++++.+++|.+++.+++.+.+. +++| ++.+|.||.|+|.+.+..+...++
T Consensus       139 ~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~-~~~g-~i~ad~vV~A~G~~s~~l~~~~g~  213 (393)
T PRK11728        139 FVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVR-TTQG-EYEARTLINCAGLMSDRLAKMAGL  213 (393)
T ss_pred             EcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEE-ECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence            33333444467888899999999999999999999998665555433 3344 799999999999998766655443

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.51  E-value=7.7e-08  Score=101.02  Aligned_cols=43  Identities=19%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPM  509 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~  509 (706)
                      +++|+|+||.|+++++.|..|.... ..++..+|+.+.+.|-|+
T Consensus         1 ~~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~g   43 (341)
T PF13434_consen    1 EIYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPG   43 (341)
T ss_dssp             -EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGG
T ss_pred             CceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCc
Confidence            3689999999999999999999874 579999999888877664

>KOG2755|consensus

Probab=98.51  E-value=4.5e-08  Score=93.53  Aligned_cols=79  Identities=18%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             EEEEEcCCCeEEcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHH
Q psy8791         604 IVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPE  678 (706)
Q Consensus       604 v~~id~~~~~V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E  678 (706)
                      |..+|..+..+++.+|..+.|++|++|||++|.. ..+|.+..   +..+|+..+.........+.|.|.|+     .+|
T Consensus        73 v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPkl-q~E~~n~~---Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~E  148 (334)
T KOG2755|consen   73 VVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKL-QVEGINPK---IVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAME  148 (334)
T ss_pred             hhhhccccceEEecCCceeeEEEEEEecCCCcce-eecCCCce---EEEEecCcHHHHHHHHHhhcceEEEEecCchhHH
Confidence            7788888889999999999999999999999964 34443321   11122222222233334467788888     566


Q ss_pred             HHHHHHHH
Q psy8791         679 IRAKAYDL  686 (706)
Q Consensus       679 ~A~~l~~~  686 (706)
                      ++-++..+
T Consensus       149 l~yElk~~  156 (334)
T KOG2755|consen  149 LTYELKIL  156 (334)
T ss_pred             HHHHhhcc
Confidence            66665443

>PLN02463 lycopene beta cyclase

Probab=98.50  E-value=3.9e-07  Score=99.27  Aligned_cols=109  Identities=23%  Similarity=0.346  Sum_probs=72.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccc-----------------cccC-----ccccCc
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFT-----------------LIGG-----GMKKLS   84 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~-----------------~~~~-----~~~~~~   84 (706)
                      ....+||+|||||+||+++|..|++.  |++|+|||+++...+...+.                 ....     ......
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~--Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~  102 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEA--GLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKK  102 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHC--CCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCc
Confidence            34457999999999999999999998  99999999976432211000                 0000     000000


Q ss_pred             ccccccc-------------cccCCCcEEEEceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccc
Q psy8791          85 DSRRPMK-------------SVLPSGATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus        85 ~~~~~~~-------------~~~~~~v~~i~~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                      ....++.             .+...++++..++|++|+.+..  .|++++|.++.+|+||.|+|....
T Consensus       103 ~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        103 DLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             cccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            0011111             1123578998889999886554  577788888999999999997654

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.49  E-value=2.2e-06  Score=93.65  Aligned_cols=57  Identities=5%  Similarity=0.028  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      ..+.+.+.+.+++.|++++.+++|+++..+++.+..+.. +|.++.+|.||.|.|...
T Consensus       108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~-~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA-DGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-CCcEEECCEEEEEeCCCH
Confidence            345666777778899999999999998765555544433 567899999999999854

>PRK06847 hypothetical protein; Provisional

Probab=98.49  E-value=1.2e-06  Score=94.39  Aligned_cols=58  Identities=16%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      +.+.+.+.+.+.+.|++++.++++.+++.+++.+.+. +.+|+++.+|.||.|.|..+.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~-~~~g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVT-FSDGTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEE-EcCCCEEEcCEEEECcCCCcc
Confidence            4567777888888899999999999998766555443 347888999999999998775

>PRK10015 oxidoreductase; Provisional

Probab=98.46  E-value=4.7e-06  Score=91.06  Aligned_cols=56  Identities=5%  Similarity=-0.021  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCc
Q psy8791         267 FYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       267 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      .+...+.+.+++.|++++.+++|+.+..+++.+..+.. ++.++.+|+||.|.|...
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s  164 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNS  164 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcch
Confidence            45566777778889999999999998765555554333 456899999999999753

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.43  E-value=3.4e-06  Score=92.60  Aligned_cols=60  Identities=22%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCC--C--CEEEEEeCC---Cce---EEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLA--N--KEAVFKSED---KTE---RLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~--~~v~~~~~~---~g~---~i~~D~vI~a~G~~~~  324 (706)
                      .+.+...+.+.|+++||+++++++|+++..+  +  +.|+.....   +++   ..+.|+||+++|.-..
T Consensus       225 yeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        225 YESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             hhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence            4788899999999999999999999998763  3  334332221   222   3579999999986544

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.42  E-value=3.7e-06  Score=91.06  Aligned_cols=58  Identities=5%  Similarity=0.077  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         267 FYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      .+.+.+.+..++.|++++.++++..+..+++.++.....++.++.++.||.|.|....
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence            4556677788889999999999999986665444433334478999999999998764

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.42  E-value=4.3e-05  Score=80.90  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeC--CCceEEeecEEEECCCCCch------hhhhc---CCC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSE--DKTERLPYAIMHVTPPMGPV------PELAT---SRL  332 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~--~~g~~i~~D~vI~a~G~~~~------~~~~~---~~l  332 (706)
                      +.+...+.+.+.+.-++++-+ ++..|..++..  +.+..-  .-.+.+++|.||-|+|..+.      +++..   .|+
T Consensus       320 ~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl  398 (474)
T COG4529         320 PAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGL  398 (474)
T ss_pred             HHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCc
Confidence            445555556666666666666 55566544322  333211  12357899999999998765      23333   355


Q ss_pred             --CC-CCCceeeCccccccCC-----CCCEEEccccCCCCCC--chHHHHHHhHHHHHHHHH
Q psy8791         333 --VD-QSGYVNVDKATLQHVK-----YSNVFAIGDCSNLPTS--KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       333 --~~-~~G~i~vd~~~l~~~~-----~~~Ifa~GD~~~~~~~--~~~~~a~~qg~~~a~ni~  384 (706)
                        .| ....|.|++ +.++.+     .++.||+|-.+.....  ........|+..+|..+.
T Consensus       399 ~rpd~~~lGl~v~~-~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         399 ARPDPPGLGLDVSD-DSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             cccCCCCCceeeCC-CCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence              22 234478877 566554     5789999977665311  112234566666666665

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.42  E-value=1.8e-06  Score=93.30  Aligned_cols=76  Identities=16%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      .++.+......+..+...+.+.+++.|++++.+++|.+++.+++.+.+. ++++ ++.+|.||+|+|.+........+
T Consensus       133 ~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~-~~~~-~i~a~~vV~aaG~~~~~l~~~~g  208 (380)
T TIGR01377       133 GLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVK-TTKG-SYQANKLVVTAGAWTSKLLSPLG  208 (380)
T ss_pred             EEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEE-eCCC-EEEeCEEEEecCcchHHHhhhcc
Confidence            4445554444566778888888999999999999999998766655543 3344 79999999999988766655444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.40  E-value=9.5e-07  Score=82.10  Aligned_cols=37  Identities=24%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             cEEEeceEEEEEcCCC--eEEcCCCcEEeeCEEEEecCc
Q psy8791         597 ATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGI  633 (706)
Q Consensus       597 v~~~~~~v~~id~~~~--~V~~~~g~~i~yd~lViAtGs  633 (706)
                      |.++..+|+.|++...  .|.+++|..+.+|+||||||.
T Consensus       117 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  117 VRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             EEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            4458889999988755  477899999999999999995

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.39  E-value=7.9e-06  Score=89.41  Aligned_cols=76  Identities=5%  Similarity=-0.089  Sum_probs=56.5

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcC
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      .++.+......+..+...+.+.+++.|++++.+++|++++.+++.+..+.++ +.++.+|.||.|+|.+....+...
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~  264 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPL  264 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHh
Confidence            3444544444456777888888999999999999999998766655434443 457999999999999887665544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.39  E-value=6.4e-07  Score=103.26  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..++|+|||||+||+++|..|++.  +.+|+|+|+.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPE  361 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            356999999999999999999998  889999998654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.38  E-value=7.7e-07  Score=98.23  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..++|+|||+|++|+++|..|+++  +.+|+++|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA--GVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCC
Confidence            346899999999999999999987  789999998664

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.37  E-value=2.3e-06  Score=98.99  Aligned_cols=84  Identities=8%  Similarity=0.026  Sum_probs=58.6

Q ss_pred             EEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcC--CC
Q psy8791         255 YCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATS--RL  332 (706)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~--~l  332 (706)
                      ++.+....+.+..+...+.+.+++ |++++.+++|.++..+++.+.+ .+++|..+.+|.||+|+|..........  .+
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v-~t~~g~~~~ad~VV~A~G~~s~~l~~~~~lpl  474 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQL-DFAGGTLASAPVVVLANGHDAARFAQTAHLPL  474 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEE-EECCCcEEECCEEEECCCCCccccccccCCCc
Confidence            334444444467788888888888 9999999999999765555554 4456777889999999999876544322  33


Q ss_pred             CCCCCcee
Q psy8791         333 VDQSGYVN  340 (706)
Q Consensus       333 ~~~~G~i~  340 (706)
                      ...+|++.
T Consensus       475 ~p~RGqv~  482 (662)
T PRK01747        475 YSVRGQVS  482 (662)
T ss_pred             ccccceEE
Confidence            44455543

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.36  E-value=3.6e-05  Score=80.30  Aligned_cols=65  Identities=14%  Similarity=0.166  Sum_probs=58.4

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      .+.+.+.+.+.++++|++++++++|+.|+.+++.+..+.+.+|.++++|.||+|+|....+|+..
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~  236 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEM  236 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHH
Confidence            47888999999999999999999999999877767777777999999999999999999988765

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.33  E-value=9.5e-06  Score=89.64  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEEEE--EeCCCc--eEEeecEEEECCCCCchhhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEAVF--KSEDKT--ERLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v~~--~~~~~g--~~i~~D~vI~a~G~~~~~~~~  328 (706)
                      .+..+......+..+...+.+.++++|++++.+++|.+++.++ +.+..  ..+++|  .++.+|.||.|+|.+......
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~  245 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQ  245 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHH
Confidence            4444555444567888999999999999999999999998643 22322  222233  368999999999999988877


Q ss_pred             cCCC
Q psy8791         329 TSRL  332 (706)
Q Consensus       329 ~~~l  332 (706)
                      ..|+
T Consensus       246 ~~Gi  249 (483)
T TIGR01320       246 KSGI  249 (483)
T ss_pred             HcCC
Confidence            7665

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.32  E-value=2.8e-05  Score=86.00  Aligned_cols=71  Identities=7%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPEL  327 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~  327 (706)
                      .++.+....+.+..+...+.+.+++.|++++.+++|.+++.++ .+. +.+++| ++.+|.||+|+|......+
T Consensus       171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~t~~g-~v~A~~VV~Atga~s~~l~  241 (460)
T TIGR03329       171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEGQ-PAV-VRTPDG-QVTADKVVLALNAWMASHF  241 (460)
T ss_pred             EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeCC-ceE-EEeCCc-EEECCEEEEcccccccccC
Confidence            3555555555567888889999999999999999999997543 233 334455 6899999999998765443

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.31  E-value=3.3e-05  Score=85.61  Aligned_cols=47  Identities=17%  Similarity=0.127  Sum_probs=38.8

Q ss_pred             CccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         342 DKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       342 d~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      ++ +|+....+|+|++|++....   .-..|..||-+++-|+...+.|++.
T Consensus       349 ~~-~le~k~~~gLf~AGqi~Gt~---Gy~eAaa~Gl~Ag~naa~~~~~~~~  395 (617)
T TIGR00136       349 KP-TLETKLIQGLFFAGQINGTT---GYEEAAAQGLMAGINAALKLQNKEP  395 (617)
T ss_pred             ch-hheeCCCCCeEEccccCCcc---hHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44 78877799999999977742   2458899999999999999998875

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PLN02661 Putative thiazole synthesis

Probab=98.30  E-value=5.4e-05  Score=78.44  Aligned_cols=114  Identities=7%  Similarity=-0.018  Sum_probs=67.3

Q ss_pred             HHHHhCCceEEcCCceEEEeCCCCEEEEEeC-------C-------CceEEeecEEEECCCCCch---hhhhc---CCCC
Q psy8791         274 DILIGRGVDVHKGKALVEIDLANKEAVFKSE-------D-------KTERLPYAIMHVTPPMGPV---PELAT---SRLV  333 (706)
Q Consensus       274 ~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~-------~-------~g~~i~~D~vI~a~G~~~~---~~~~~---~~l~  333 (706)
                      +.+++.||+++.++.+.++..+++.+..+..       +       +...+.++.||+|||..++   ..+..   .++.
T Consensus       181 ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~~  260 (357)
T PLN02661        181 KLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMI  260 (357)
T ss_pred             HHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCCc
Confidence            4455689999999999888766555433321       0       1136899999999997764   11111   1221


Q ss_pred             C---CCCceeeCc-------cccccCCCCCEEEccccCCC--CCC---chHHHHHHhHHHHHHHHHHHHcC
Q psy8791         334 D---QSGYVNVDK-------ATLQHVKYSNVFAIGDCSNL--PTS---KTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       334 ~---~~G~i~vd~-------~~l~~~~~~~Ifa~GD~~~~--~~~---~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      .   .-..+.++.       +|-+  =+|++|++|=.++-  ..|   ++-......|+.+|+.|...+..
T Consensus       261 ~~~pg~~~~~~~~~e~~~v~~t~e--v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~  329 (357)
T PLN02661        261 DSVPGMKALDMNAAEDAIVRLTRE--VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL  329 (357)
T ss_pred             cCCCCccccchhhHHHHHHhccCc--ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence            1   011111111       1222  28999999965432  112   22224457899999999999864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.29  E-value=7.6e-06  Score=88.77  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.|++++.+++|++++.+++.+.+. +++|+++.+|+||.|.|..+.
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~-~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLR-LDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEE-ECCCCEEEeCEEEEecCCCch
Confidence            4566777788888999999999999998766656543 446788999999999999874

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.28  E-value=9.3e-06  Score=89.16  Aligned_cols=79  Identities=13%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCC-CCEEEEE--eCCCce--EEeecEEEECCCCCchhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLA-NKEAVFK--SEDKTE--RLPYAIMHVTPPMGPVPEL  327 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~-~~~v~~~--~~~~g~--~i~~D~vI~a~G~~~~~~~  327 (706)
                      .+..+.........+.+.+.+.+.+ .|++++++++|..+..+ ++.....  .+++++  ++.+|.||+|.|.+...++
T Consensus       172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La  251 (497)
T PRK13339        172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLL  251 (497)
T ss_pred             EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHH
Confidence            3444444444456778888787754 59999999999998754 3322221  233442  6899999999999999888


Q ss_pred             hcCCC
Q psy8791         328 ATSRL  332 (706)
Q Consensus       328 ~~~~l  332 (706)
                      ..+|+
T Consensus       252 ~~~Gi  256 (497)
T PRK13339        252 QKSGI  256 (497)
T ss_pred             HHcCC
Confidence            87765

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.27  E-value=2.5e-06  Score=97.97  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=32.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..++|+|||+|+||+++|..|++.  +.+|+|+|+.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~  344 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE  344 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence            357899999999999999999987  789999998664

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.26  E-value=6.7e-06  Score=88.86  Aligned_cols=58  Identities=7%  Similarity=0.034  Sum_probs=46.7

Q ss_pred             hhHHHHHHHHHHhCC-ceEEcCCceEEEeCCCCEEEEEeCC-CceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRG-VDVHKGKALVEIDLANKEAVFKSED-KTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~~v~~~~~~-~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+.+.+ |+++.++.|+.++.+++.+.. +.+ +|++++||++|-|=|....
T Consensus       104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v-~l~~dG~~~~a~llVgADG~~S~  163 (387)
T COG0654         104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTV-TLSFDGETLDADLLVGADGANSA  163 (387)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEE-EEcCCCcEEecCEEEECCCCchH
Confidence            457777788887765 999999999999987766663 344 8889999999999997553

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.26  E-value=4.9e-06  Score=89.71  Aligned_cols=75  Identities=7%  Similarity=0.018  Sum_probs=55.2

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      ..++.+....+.+..+...+.+.+.+.|++++.+++|+++..+++.+.+. +++| ++.+|.||.|+|......+..
T Consensus       136 ~a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g-~~~a~~vV~A~G~~~~~l~~~  210 (376)
T PRK11259        136 IALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVT-TADG-TYEAKKLVVSAGAWVKDLLPP  210 (376)
T ss_pred             eEEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEE-eCCC-EEEeeEEEEecCcchhhhccc
Confidence            34455554445556777777788888999999999999998766555443 4455 799999999999987765543

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.26  E-value=3.6e-05  Score=85.21  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCC-ceEEcCCceEEEeCCCC-EE--EEEeCCCce--EEeecEEEECCCCCchhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRG-VDVHKGKALVEIDLANK-EA--VFKSEDKTE--RLPYAIMHVTPPMGPVPEL  327 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~-~v--~~~~~~~g~--~i~~D~vI~a~G~~~~~~~  327 (706)
                      .+..+......+..+.+.+.+.+++.| ++++++++|.+++.+++ .+  ....+++|+  ++.+|.||.|+|.+....+
T Consensus       171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~  250 (494)
T PRK05257        171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLL  250 (494)
T ss_pred             EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHH
Confidence            344444444456778888888898886 89999999999986333 23  222223343  6999999999999998887


Q ss_pred             hcCCC
Q psy8791         328 ATSRL  332 (706)
Q Consensus       328 ~~~~l  332 (706)
                      ...|+
T Consensus       251 ~~~Gi  255 (494)
T PRK05257        251 QKSGI  255 (494)
T ss_pred             HHcCC
Confidence            76665

>PLN02463 lycopene beta cyclase

Probab=98.25  E-value=2.2e-06  Score=93.39  Aligned_cols=43  Identities=19%  Similarity=0.280  Sum_probs=35.9

Q ss_pred             CCcEEEeceEEEEEcCCC--eEEcCCCcEEeeCEEEEecCcccCc
Q psy8791         595 SGATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYY  637 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~--~V~~~~g~~i~yd~lViAtGs~~~~  637 (706)
                      .|+++..++|++|+.+..  .|++++|+++.+|.||.|+|..+..
T Consensus       127 ~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l  171 (447)
T PLN02463        127 NGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL  171 (447)
T ss_pred             cCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence            589998889999987654  4778889899999999999987653

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.25  E-value=2.5e-06  Score=88.54  Aligned_cols=34  Identities=32%  Similarity=0.448  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||+|||||+||+++|..|++.  +.+|+|||+.+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~--g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK--GLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCC
Confidence            5899999999999999999998  899999999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.24  E-value=1e-05  Score=88.33  Aligned_cols=76  Identities=11%  Similarity=-0.106  Sum_probs=52.0

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeC-CCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcC
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDL-ANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      .++.+......+..+...+.+.+++.|++++.+++|.+++. +++.+..+.+++| ++.+|.||+|+|-.........
T Consensus       171 a~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~  247 (407)
T TIGR01373       171 GLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMA  247 (407)
T ss_pred             EEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHc
Confidence            34444443444456667777888999999999999999964 3344443444455 6899999999888766544433

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>KOG1800|consensus

Probab=98.24  E-value=2e-06  Score=86.92  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=33.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+|.|||+|+||+.+|..|.++.++.+|.|+|+.+.+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            44899999999999999999998778999999997653

>PRK06847 hypothetical protein; Provisional

Probab=98.23  E-value=2.8e-06  Score=91.55  Aligned_cols=37  Identities=27%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +++||+|||||+||+++|..|++.  +.+|+|+|+++..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCC
Confidence            577999999999999999999987  8999999987653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.22  E-value=1.7e-06  Score=70.42  Aligned_cols=76  Identities=21%  Similarity=0.407  Sum_probs=54.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccc-cccccCCCcEEEE-ceeEEEE
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP-MKSVLPSGATWVK-DKIVSFD  109 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~-~~v~~id  109 (706)
                      +|+|||||+.|+-+|..|++.  +.+|+||++++...  +.+        ++ ..... .+.+.+.+++++. ..+++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~~~--~~~--------~~-~~~~~~~~~l~~~gV~v~~~~~v~~i~   67 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDRLL--PGF--------DP-DAAKILEEYLRKRGVEVHTNTKVKEIE   67 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSSSS--TTS--------SH-HHHHHHHHHHHHTTEEEEESEEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccchhh--hhc--------CH-HHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            589999999999999999998  89999999999643  211        11 11111 2233347999987 6788888


Q ss_pred             cCCCE--EEeCCC
Q psy8791         110 PENNR--VRTQAG  120 (706)
Q Consensus       110 ~~~~~--v~~~~g  120 (706)
                      .+...  |+++||
T Consensus        68 ~~~~~~~V~~~~g   80 (80)
T PF00070_consen   68 KDGDGVEVTLEDG   80 (80)
T ss_dssp             EETTSEEEEEETS
T ss_pred             EeCCEEEEEEecC
Confidence            77653  666654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.22  E-value=3.7e-06  Score=93.27  Aligned_cols=57  Identities=9%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM  321 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~  321 (706)
                      ...+.+.+.+.+++.|++|+++++|++|..++++.+.+.+.+|+.+++|.||.+...
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            578999999999999999999999999998776533344456678999999998777

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.21  E-value=8.1e-06  Score=87.65  Aligned_cols=106  Identities=16%  Similarity=0.194  Sum_probs=68.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc--ccccc--------------------cCccccCcccccc
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP--MFTLI--------------------GGGMKKLSDSRRP   89 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p--~~~~~--------------------~~~~~~~~~~~~~   89 (706)
                      ||+|||||+||+++|.+|++..++.+|+|||+++...+..  .|...                    ............+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            7999999999999999995544589999999876532110  00000                    0000000000011


Q ss_pred             cc-------------cccCCCcEEEEceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccc
Q psy8791          90 MK-------------SVLPSGATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus        90 ~~-------------~~~~~~v~~i~~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                      +.             ++...++.++.++|++|+....  .|.+++|.++.++++|-|.|....
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence            11             0111356777889999988776  678889989999999999996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.21  E-value=2.9e-06  Score=91.96  Aligned_cols=103  Identities=19%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccc----------------cccCc-c-cc-C-cc--cccc
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFT----------------LIGGG-M-KK-L-SD--SRRP   89 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~----------------~~~~~-~-~~-~-~~--~~~~   89 (706)
                      ||+|||||+||+++|+.|++.  |++|+|||+++.......+.                ....+ . .. . ..  ...+
T Consensus         1 DviIiGaG~AGl~~A~~la~~--g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP--GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA   78 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence            699999999999999999988  89999999986532210000                00000 0 00 0 00  0001


Q ss_pred             cc-------------cccCCCcEEEEceeEEEEcC-CC--EEEeCCCeEEEecEEEEcccccc
Q psy8791          90 MK-------------SVLPSGATWVKDKIVSFDPE-NN--RVRTQAGSEISYEYMIVASGIQM  136 (706)
Q Consensus        90 ~~-------------~~~~~~v~~i~~~v~~id~~-~~--~v~~~~g~~~~yd~lviAtG~~~  136 (706)
                      +.             .+...++++..++|+.+..+ ..  .|++++|.++.+|+||.|+|..+
T Consensus        79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            10             01124678878888888765 22  46667777899999999999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06184 hypothetical protein; Provisional

Probab=98.21  E-value=1.3e-05  Score=89.81  Aligned_cols=58  Identities=12%  Similarity=0.031  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE--eCCCceEEeecEEEECCCCCch
Q psy8791         267 FYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK--SEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~--~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      .+.+.+.+.+.+.|++++.++++.+++.+++.++..  ..++++++.+|.||-|.|....
T Consensus       110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence            455667777888899999999999998765554432  2246678999999999998864

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.21  E-value=9.5e-06  Score=91.06  Aligned_cols=58  Identities=10%  Similarity=0.079  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      ..+.+.+.+.++++|++++++++|++|..+++.++.+.+++|+++.+|.||+|++...
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~  276 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH  276 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence            5788889999999999999999999998766655555556788899999999988643

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.21  E-value=6e-06  Score=87.22  Aligned_cols=90  Identities=12%  Similarity=0.144  Sum_probs=53.8

Q ss_pred             cEEEeceEEEEEcCC----CeEEcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccch--hhhccCc
Q psy8791         597 ATWVKDKIVSFDPEN----NRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTV--TWEQKHK  670 (706)
Q Consensus       597 v~~~~~~v~~id~~~----~~V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~k  670 (706)
                      +.+++++++++.+..    ..+...+|....+|-+|+|||..+..++.  ....+.+...  -+.+.+...  +......
T Consensus       122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~--~~~~~~~~~~--~ia~~~~~~~ld~v~~~d  197 (474)
T COG4529         122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP--AARDLKGSPR--LIADPYPANALDGVDADD  197 (474)
T ss_pred             eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch--hhhccCCCcc--eeccccCCcccccccCCC
Confidence            777899988887762    24677889899999999999987655443  2111221111  011111111  1112334


Q ss_pred             cEEEE--cHHHHHHHHHHHhhh
Q psy8791         671 QYQLV--SPEIRAKAYDLTKRK  690 (706)
Q Consensus       671 ~vvVi--G~E~A~~l~~~~~~~  690 (706)
                      +|+|+  |+.++..+..+..+-
T Consensus       198 rVli~GsgLt~~D~v~~l~~~g  219 (474)
T COG4529         198 RVLIVGSGLTSIDQVLVLRRRG  219 (474)
T ss_pred             ceEEecCCchhHHHHHHHhccC
Confidence            58888  888888777665543

>PLN02697 lycopene epsilon cyclase

Probab=98.20  E-value=4.9e-06  Score=92.18  Aligned_cols=107  Identities=23%  Similarity=0.315  Sum_probs=67.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc--c---Cccccccc---------------CccccCcccc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY--Y---QPMFTLIG---------------GGMKKLSDSR   87 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~--~---~p~~~~~~---------------~~~~~~~~~~   87 (706)
                      ...+||+|||||+||+++|..|++.  |++|+|||+.....  +   ...+....               ..........
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~--Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~  183 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG  183 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhC--CCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeecc
Confidence            3458999999999999999999998  99999999853211  0   00000000               0000000000


Q ss_pred             cccc---------cc----cCCCcEEEEceeEEEEcCCCE---EEeCCCeEEEecEEEEcccccc
Q psy8791          88 RPMK---------SV----LPSGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGIQM  136 (706)
Q Consensus        88 ~~~~---------~~----~~~~v~~i~~~v~~id~~~~~---v~~~~g~~~~yd~lviAtG~~~  136 (706)
                      .++.         .+    ...++++..++|+.|..+...   +.+.+|.++.++.||.|+|...
T Consensus       184 ~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        184 RAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             CcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            1111         11    125788888899998754432   3456778899999999999765

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.20  E-value=9.9e-06  Score=88.24  Aligned_cols=58  Identities=5%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+.+.|++++.+++|++++.+++.+.+. .++|+++.+|+||.|.|..+.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~-~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVT-LSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEE-ECCCCEEEeCEEEEcCCCChH
Confidence            4677778888888999999999999998766655543 347788999999999998765

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.19  E-value=9.9e-06  Score=88.64  Aligned_cols=39  Identities=23%  Similarity=0.469  Sum_probs=35.3

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +....++|+|||||+||+++|..|++.  |++|+|||+.+.
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   52 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKDS--GLRIALIEAQPA   52 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhcC--CCEEEEEecCCc
Confidence            444568999999999999999999999  999999999985

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.19  E-value=7.6e-05  Score=84.16  Aligned_cols=86  Identities=5%  Similarity=-0.156  Sum_probs=58.3

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe---CCC--ceEEeecEEEECCCCCchhhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS---EDK--TERLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~---~~~--g~~i~~D~vI~a~G~~~~~~~~  328 (706)
                      .+..+. ....+..+...+....+++|++++.+++|+++..+++.++.+.   ..+  +.++.+|.||.|+|.+...+..
T Consensus       138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~  216 (546)
T PRK11101        138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAE  216 (546)
T ss_pred             EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHH
Confidence            344443 3344667777777888899999999999999987655443222   222  3579999999999999887665


Q ss_pred             cCCC----CCCCCcee
Q psy8791         329 TSRL----VDQSGYVN  340 (706)
Q Consensus       329 ~~~l----~~~~G~i~  340 (706)
                      ..++    ...+|...
T Consensus       217 ~~g~~~~i~p~kG~~l  232 (546)
T PRK11101        217 YADLRIRMFPAKGSLL  232 (546)
T ss_pred             hcCCCCceeecceEEE
Confidence            4432    34455443

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.18  E-value=1.9e-06  Score=90.51  Aligned_cols=101  Identities=26%  Similarity=0.388  Sum_probs=63.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC-CCcc---cCcccccc-------------------------------
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT-DDHY---YQPMFTLI-------------------------------   76 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~-~~~~---~~p~~~~~-------------------------------   76 (706)
                      ||+|||||.||+.||+.+++.  |++|+|+..+ +...   ..|++...                               
T Consensus         1 DViVVGgG~AG~eAA~aaAr~--G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN   78 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARM--GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN   78 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT--T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence            799999999999999999999  9999999433 2211   11221100                               


Q ss_pred             ----cCccc-----cCccccccccccc-C-CCcEEEEceeEEEEcCCCE---EEeCCCeEEEecEEEEcccc
Q psy8791          77 ----GGGMK-----KLSDSRRPMKSVL-P-SGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGI  134 (706)
Q Consensus        77 ----~~~~~-----~~~~~~~~~~~~~-~-~~v~~i~~~v~~id~~~~~---v~~~~g~~~~yd~lviAtG~  134 (706)
                          +.+..     +.......+.+.+ . .++++++++|++|..+++.   |.+.+|..+.+|.+|+|||.
T Consensus        79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                00000     0000111111221 2 6899999999999887764   67788999999999999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR00275 flavoprotein, HI0933 family

Probab=98.18  E-value=3.1e-05  Score=83.81  Aligned_cols=56  Identities=7%  Similarity=-0.023  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      ..+.+.+.+.+++.|+++++++.|.++..+++.+.+. + +++++.+|.||+|+|...
T Consensus       105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~-~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       105 ADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVE-T-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEE-E-CCcEEEcCEEEECCCCcc
Confidence            6778888899999999999999999997665544433 2 456799999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.18  E-value=5.2e-06  Score=89.14  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=36.0

Q ss_pred             CCcEEEeceEEEEEcCCC--eEEcCCCcEEeeCEEEEecCcccC
Q psy8791         595 SGATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMY  636 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~--~V~~~~g~~i~yd~lViAtGs~~~  636 (706)
                      .++.++.++|++|+....  .|++++|+++.++.||-|+|..+.
T Consensus       100 ~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen  100 GGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             CCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence            477789999999998776  578899999999999999996654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07588 hypothetical protein; Provisional

Probab=98.18  E-value=9.6e-06  Score=87.93  Aligned_cols=55  Identities=9%  Similarity=0.052  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      +.+.+.+.+. .|++++.+++|++++.+++.+.+ .+++|+++++|+||-|-|.+..
T Consensus       105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v-~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRV-TFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEE-EECCCCEEEeCEEEECCCCCcc
Confidence            4444444443 47999999999999877666654 3457888999999999998654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.17  E-value=7.3e-06  Score=76.18  Aligned_cols=101  Identities=21%  Similarity=0.464  Sum_probs=63.5

Q ss_pred             EEECCCHHHHHHHHHHHhhc---CCCeEEEEcCCCCc---ccCcc-----cccccCcccc--------------------
Q psy8791          34 LVVGGGAAGCSMAAKFTSKL---GKGQVSIVEPTDDH---YYQPM-----FTLIGGGMKK--------------------   82 (706)
Q Consensus        34 vIIGgG~aGl~aA~~L~~~~---~~~~Vtlie~~~~~---~~~p~-----~~~~~~~~~~--------------------   82 (706)
                      +|||||++|++++.+|.+..   ...+|+|||+++..   .|.+.     +...+....+                    
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            59999999999999999883   56899999996641   11110     0000000000                    


Q ss_pred             ----Cc-ccccc-------cc----ccc---CCC--cEEEEceeEEEEcCCC--EEEeCCCeEEEecEEEEcccc
Q psy8791          83 ----LS-DSRRP-------MK----SVL---PSG--ATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGI  134 (706)
Q Consensus        83 ----~~-~~~~~-------~~----~~~---~~~--v~~i~~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~  134 (706)
                          .. ....|       +.    .+.   +.+  ++++..+|++|+....  .+.+.+|..+.+|.||+|||-
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence                00 00000       11    111   123  5567789999988765  477789999999999999994

>PRK09897 hypothetical protein; Provisional

Probab=98.16  E-value=7.8e-06  Score=90.57  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |++|+|||||++|+++|.+|.+.....+|+|||++...
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            56899999999999999999886545799999996643

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.15  E-value=2.9e-05  Score=77.29  Aligned_cols=136  Identities=9%  Similarity=-0.046  Sum_probs=86.3

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceE--EeecEEEECCCCCchh-h---
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTER--LPYAIMHVTPPMGPVP-E---  326 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~--i~~D~vI~a~G~~~~~-~---  326 (706)
                      +..+-..|.-+..-++.+.+...+++.|.-++.|.+|...+-.+++|+...+.+...  +.+|..|+|+|.--.. .   
T Consensus       245 l~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae  324 (421)
T COG3075         245 LFELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE  324 (421)
T ss_pred             eeecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence            444433332222356888999999999999999999999988777777666656555  4589999999854221 1   


Q ss_pred             -------hhcCCC-CCCC-----------------CceeeCccccccCC----CCCEEEccccCCCCCCc----hHHHHH
Q psy8791         327 -------LATSRL-VDQS-----------------GYVNVDKATLQHVK----YSNVFAIGDCSNLPTSK----TAAAVA  373 (706)
Q Consensus       327 -------~~~~~l-~~~~-----------------G~i~vd~~~l~~~~----~~~Ifa~GD~~~~~~~~----~~~~a~  373 (706)
                             +-.+.+ .+++                 =.+.+|+ +++...    ..|+||+|-+....+|-    -...+.
T Consensus       325 ~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~-~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVai  403 (421)
T COG3075         325 RDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDD-TLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAI  403 (421)
T ss_pred             hhhhhcchhhcccccCcchhhhhhccccCCChhHHhCccccc-ccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHH
Confidence                   111111 0000                 0145565 565332    46899999888776642    223566


Q ss_pred             HhHHHHHHHHHHHHcC
Q psy8791         374 GQCKVVYDNLSAVMKN  389 (706)
Q Consensus       374 ~qg~~~a~ni~~~l~g  389 (706)
                      ..|-.+|+.|++...+
T Consensus       404 vta~~aa~qi~~~~~~  419 (421)
T COG3075         404 VTALHAAEQIAERAGG  419 (421)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            6777888888776544

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.13  E-value=1.5e-05  Score=86.28  Aligned_cols=77  Identities=10%  Similarity=-0.003  Sum_probs=56.5

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCC-ceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRG-VDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      --+..+....+.+..+...+.+.++++| ..+..++.+..++.++ ....+.+.+|+ +.+|.||+|+|.+.+......+
T Consensus       143 ~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~  220 (387)
T COG0665         143 GGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGELAATLG  220 (387)
T ss_pred             eeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence            4455666666666788899999999999 5566688898888752 24444455565 9999999999999887665444

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.13  E-value=5.8e-06  Score=91.65  Aligned_cols=36  Identities=25%  Similarity=0.402  Sum_probs=32.5

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +..+||||||||+||+.||..+++.  +.+|++||++.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~--G~kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARM--GAKTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHc--CCcEEEEeccc
Confidence            3468999999999999999999998  89999999864

>PRK07190 hypothetical protein; Provisional

Probab=98.11  E-value=2.2e-05  Score=87.11  Aligned_cols=56  Identities=16%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCc
Q psy8791         267 FYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       267 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.... .+|+++.++.||.|.|...
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~-~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTL-SNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEE-CCCcEEEeCEEEECCCCCH
Confidence            4556667778889999999999999987665555433 4677999999999999864

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.11  E-value=1.3e-05  Score=85.41  Aligned_cols=59  Identities=15%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE--EEeCCCc--eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV--FKSEDKT--ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~--~~~~~~g--~~i~~D~vI~a~G~~~~  324 (706)
                      +.+.+.+.+.+++.|++++.++++..++.+...+.  +....+|  +++++|+||-|-|....
T Consensus       111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~  173 (356)
T PF01494_consen  111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK  173 (356)
T ss_dssp             HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred             HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence            45677788888889999999999998876655433  3333234  37899999999999875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.11  E-value=1.1e-05  Score=86.72  Aligned_cols=68  Identities=10%  Similarity=0.078  Sum_probs=48.4

Q ss_pred             EEeCCCcCCCchhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhh
Q psy8791         255 YCTGMGVLFPSPFYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~  328 (706)
                      ++.+....+.+..+...+.+.+.+. |++++.+++|.+++.+  .+.   +++| ++.+|.||+|+|...+.++.
T Consensus       134 ~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~--~v~---t~~g-~i~a~~VV~A~G~~s~~l~~  202 (365)
T TIGR03364       134 LHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG--TVR---TSRG-DVHADQVFVCPGADFETLFP  202 (365)
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC--eEE---eCCC-cEEeCEEEECCCCChhhhCc
Confidence            3444444444567777888877775 9999999999999753  233   2344 47899999999998776543

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.10  E-value=2.9e-05  Score=84.32  Aligned_cols=57  Identities=9%  Similarity=0.064  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         267 FYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      .+.+.+.+.+.+. +++++.++.+++++.+++.+.+. ..+|+++.+|+||.|.|..+.
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~-~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVF-DQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEE-EcCCCEEecCEEEECCCcChH
Confidence            4566666666665 59999999999998766555543 346788999999999998875

>KOG2820|consensus

Probab=98.10  E-value=1.3e-05  Score=80.00  Aligned_cols=75  Identities=13%  Similarity=-0.027  Sum_probs=55.6

Q ss_pred             EEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEe--CCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         255 YCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEID--LANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      +++....+.......+.++..+++.|+.++.+..+..++  .+++..+.+.+.+|..+.++.+|+++|.+-+.++.+
T Consensus       142 ~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~  218 (399)
T KOG2820|consen  142 VVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT  218 (399)
T ss_pred             cccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence            334333333346677788999999999999999988776  222223444556889999999999999999988876

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.10  E-value=5.7e-06  Score=93.88  Aligned_cols=37  Identities=30%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ...+|+|||+|++|+++|..|++.  +.+|+++|+.+..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~~~  172 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGPKL  172 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence            456899999999999999999987  7899999987653

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.10  E-value=3.9e-06  Score=88.17  Aligned_cols=39  Identities=26%  Similarity=0.438  Sum_probs=32.9

Q ss_pred             CCcEEEeceEEEEEcCCCe---EEcCCCcEEeeCEEEEecCc
Q psy8791         595 SGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGI  633 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~~---V~~~~g~~i~yd~lViAtGs  633 (706)
                      .++++++++|+.|..++..   |.+.+|+.+.+|.+|||||.
T Consensus       109 ~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  109 PNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            4899999999999887765   57889999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07233 hypothetical protein; Provisional

Probab=98.09  E-value=2.6e-05  Score=85.80  Aligned_cols=56  Identities=11%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM  321 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~  321 (706)
                      ...+.+.+.+.+++.|++++++++|.+|+.+++.++.+. .+++++++|.||+|++.
T Consensus       197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCEEEECCCH
Confidence            467888888999999999999999999987666554433 35678999999999875

>PRK08244 hypothetical protein; Provisional

Probab=98.08  E-value=1.8e-05  Score=88.53  Aligned_cols=59  Identities=8%  Similarity=0.125  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe-CCCc-eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS-EDKT-ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~-~~~g-~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.|++++.++++++++.+++.+++.. ..+| +++.+|+||-|.|.++.
T Consensus       100 ~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244        100 AETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence            34566777778888999999999999976665554322 2245 57999999999999874

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.08  E-value=9.6e-06  Score=87.98  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=34.4

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ++.++||+|||||++|+++|..|.+.  +.+|+|||+.+..
T Consensus         3 ~~~~~dV~IvGaG~aGl~~A~~La~~--G~~v~liE~~~~~   41 (392)
T PRK08773          3 RRSRRDAVIVGGGVVGAACALALADA--GLSVALVEGREPP   41 (392)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcC--CCEEEEEeCCCCc
Confidence            45678999999999999999999987  8899999997643

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.06  E-value=1.1e-05  Score=87.31  Aligned_cols=41  Identities=22%  Similarity=0.398  Sum_probs=33.5

Q ss_pred             CCcEEEeceEEEEEcC-CC--eEEcCCCcEEeeCEEEEecCccc
Q psy8791         595 SGATWVKDKIVSFDPE-NN--RVRTQAGSEISYEYMIVASGIQM  635 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~-~~--~V~~~~g~~i~yd~lViAtGs~~  635 (706)
                      .|++++.++|+.+..+ ..  .|++.+|+++.+|.||.|+|..+
T Consensus        98 ~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        98 GGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             cCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            5888888899988765 22  46677888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.06  E-value=4e-05  Score=86.90  Aligned_cols=58  Identities=3%  Similarity=0.019  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEE-eCCCce-EEeecEEEECCCCCch
Q psy8791         267 FYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFK-SEDKTE-RLPYAIMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~-~~~~g~-~i~~D~vI~a~G~~~~  324 (706)
                      .+.+.+.+.+.+. |++++.++++++++.+++.+... ...+|+ ++.+|+||.|.|....
T Consensus       126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP  186 (547)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence            3455566666664 79999999999998766555432 222443 7999999999998875

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.06  E-value=2e-05  Score=85.18  Aligned_cols=58  Identities=10%  Similarity=0.061  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHhCC-ceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRG-VDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+.+.| ++++.+++|++++.+++.+.+. .++|+++.+|+||.|.|....
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~-~~~g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELT-LDDGQQLRARLLVGADGANSK  164 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEE-ECCCCEEEeeEEEEeCCCCCH
Confidence            456677777777877 9999999999998766656543 457888999999999998654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.06  E-value=8.3e-06  Score=88.86  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+||+|||||++|+++|..|++..++.+|+|+|+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            6799999999999999999998744589999999764

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.06  E-value=1e-05  Score=89.69  Aligned_cols=105  Identities=21%  Similarity=0.299  Sum_probs=68.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc-c---Cccccc-----------ccCccc----cCc-----
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY-Y---QPMFTL-----------IGGGMK----KLS-----   84 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~-~---~p~~~~-----------~~~~~~----~~~-----   84 (706)
                      ..+||||||||+||+.||..+++.  |.+|+|||++.... .   .|....           ..++..    +..     
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~--G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r   80 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARM--GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFR   80 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHc--CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCcee
Confidence            358999999999999999999998  99999999984211 1   111100           011000    000     


Q ss_pred             --------cc-----ccc---ccc-----ccC-CCcEEEEceeEEEEcCCCE---EEeCCCeEEEecEEEEccccc
Q psy8791          85 --------DS-----RRP---MKS-----VLP-SGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGIQ  135 (706)
Q Consensus        85 --------~~-----~~~---~~~-----~~~-~~v~~i~~~v~~id~~~~~---v~~~~g~~~~yd~lviAtG~~  135 (706)
                              .+     ..+   +..     +.. .++++++++|+++..+++.   |.+.+|..+.++.+|+|||..
T Consensus        81 ~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         81 MLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             ecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence                    00     000   011     112 4788888999988765553   567788899999999999964

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.05  E-value=2.4e-05  Score=83.94  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+|||||.+||+||++|+++.|.++|+|+|+.++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r   36 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR   36 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            479999999999999999999977799999999986

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.05  E-value=4.9e-05  Score=85.91  Aligned_cols=59  Identities=12%  Similarity=0.095  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCC-Cc--eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSED-KT--ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~-~g--~~i~~D~vI~a~G~~~~  324 (706)
                      +.+.+.+.+.+.+. |++++.++++++++.+++.+++...+ +|  +++.+|+||-|.|....
T Consensus       113 ~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~  175 (538)
T PRK06183        113 PLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF  175 (538)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence            34555666666664 99999999999998776666543322 45  57999999999998765

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.05  E-value=2.4e-05  Score=83.67  Aligned_cols=102  Identities=20%  Similarity=0.317  Sum_probs=62.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc----ccCcccccccCc-----c-----ccCcc-----------c
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH----YYQPMFTLIGGG-----M-----KKLSD-----------S   86 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~----~~~p~~~~~~~~-----~-----~~~~~-----------~   86 (706)
                      ||+|||||+||+++|..|++..++.+|+|+|+.+..    .+. .+..-...     .     .....           .
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~-~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l   79 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS-FFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKL   79 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce-ecccccchhhhhhhhhhheEeCCCCEEECcchhhhc
Confidence            699999999999999999986568999999998731    111 01000000     0     00000           0


Q ss_pred             ccccc--------cc-c---CCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccc
Q psy8791          87 RRPMK--------SV-L---PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus        87 ~~~~~--------~~-~---~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                      ..++.        +. .   ..++.+ .++|++++++  .|++.+|.++.+|.||-|.|..+.
T Consensus        80 ~~~Y~~I~r~~f~~~l~~~l~~~i~~-~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        80 KTAYRSMTSTRFHEGLLQAFPEGVIL-GRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCCceEEEHHHHHHHHHHhhcccEEe-cCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCCC
Confidence            00111        11 0   122222 4788888654  367788889999999999997653

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.05  E-value=1.8e-05  Score=86.73  Aligned_cols=38  Identities=26%  Similarity=0.417  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +..++||+|||||+||++||..|++.  |++|+|+|++..
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~--G~~VlllEr~~~   73 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKG--GIETFLIERKLD   73 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence            34568999999999999999999999  999999999853

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.04  E-value=1.2e-05  Score=87.18  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      .+++|+|||||+||+++|..|++.  |++|+|+|+++..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQS--GLRVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCc
Confidence            356999999999999999999998  8999999998763

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.02  E-value=3.5e-05  Score=83.58  Aligned_cols=57  Identities=7%  Similarity=0.022  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         267 FYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      .+.+.+.+.+.+. |++++.+++++++..+++.+.+ ..++|+++.+|+||.|.|....
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v-~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWEL-TLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEE-EECCCCEEEeCEEEEeCCCCch
Confidence            4556666667766 9999999999999765554443 3346778999999999999875

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.02  E-value=6.4e-05  Score=79.45  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +|+|||+|.|||++|..|.+.   ++|+|+.|++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCC
Confidence            899999999999999999986   89999998764

>PRK06184 hypothetical protein; Provisional

Probab=98.00  E-value=1.6e-05  Score=89.05  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=33.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+++|+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~--Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARR--GVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            467999999999999999999998  8999999997654

>PRK07236 hypothetical protein; Provisional

Probab=98.00  E-value=2.4e-05  Score=84.63  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||++||++|..|++.  |++|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence            457999999999999999999998  899999999874

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.00  E-value=1.2e-05  Score=86.64  Aligned_cols=38  Identities=18%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +.++|+|||||+||++||..+.+.. +.+|+|+|+.+.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~p   75 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNP   75 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence            3568999999999999999876432 7899999997754

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.99  E-value=2.5e-05  Score=84.50  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT   64 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~   64 (706)
                      +||+|||||+||++||+.|++.  |++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~--G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA--GIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECC
Confidence            5899999999999999999998  8999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.99  E-value=8e-06  Score=63.78  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=27.9

Q ss_pred             EECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          35 VVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        35 IIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      |||||++||++|+.|++.  +++|+|+|+++.
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCcc
Confidence            899999999999999999  899999999996

...

>PRK05868 hypothetical protein; Validated

Probab=97.99  E-value=3.5e-05  Score=82.78  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|+|||||++|+++|..|+++  |++|+|||+.+.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence            46899999999999999999998  899999999865

>PRK06834 hypothetical protein; Provisional

Probab=97.98  E-value=1.8e-05  Score=87.86  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~--G~~v~vlEr~~~~   38 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALA--GVDVAIVERRPNQ   38 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            347999999999999999999998  8999999987653

>PRK06753 hypothetical protein; Provisional

Probab=97.97  E-value=2.1e-05  Score=84.67  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+|||||+||+++|..|++.  |++|+|+|+++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence            4799999999999999999998  999999999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.97  E-value=6.4e-06  Score=89.21  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      -++|.|||||+||+++|..|.+.  ++.|+++|+.+.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~  157 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVAL  157 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCC
Confidence            37899999999999999999998  899999998554

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.96  E-value=7.6e-05  Score=74.91  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      .+++|.|||+|.+||+||+.|.++   ++|||+|.+++..
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlG   43 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLG   43 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc---cceEEEecccccc
Confidence            467999999999999999999998   8999999998744

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.96  E-value=2.5e-05  Score=85.72  Aligned_cols=58  Identities=14%  Similarity=0.202  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeC-CCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDL-ANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+..+++||+++.++ |+.+.. +++.+..+.+++|+++.+|++|=|+|++..
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            5788889999999999999985 555543 345566666778999999999999999764

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK10015 oxidoreductase; Provisional

Probab=97.96  E-value=4.2e-05  Score=83.61  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHY  505 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~  505 (706)
                      .++||+|||||+||++||..|++.  +.+|+|||+.+...
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~--G~~VlliEr~~~~g   41 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARA--GLDVLVIERGDSAG   41 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCCC
Confidence            358999999999999999999997  89999999987654

>PRK06834 hypothetical protein; Provisional

Probab=97.95  E-value=3e-05  Score=86.15  Aligned_cols=108  Identities=17%  Similarity=0.279  Sum_probs=67.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc-Cc---ccc--------------ccc--------Cc----
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY-QP---MFT--------------LIG--------GG----   79 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~-~p---~~~--------------~~~--------~~----   79 (706)
                      ..+|+|||||++|+++|..|+++  |++|+|||+.+.... .+   .+.              .+.        .+    
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~--G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~   80 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALA--GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT   80 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence            47999999999999999999999  999999998864211 10   000              000        00    


Q ss_pred             cccCcccc--ccc---------ccc-----cCCCcEEEE-ceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccC
Q psy8791          80 MKKLSDSR--RPM---------KSV-----LPSGATWVK-DKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYD  139 (706)
Q Consensus        80 ~~~~~~~~--~~~---------~~~-----~~~~v~~i~-~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~  139 (706)
                      ........  .++         ..+     ...++++.. .+|++++.+..  .+++.+|.++.+|+||.|.|......
T Consensus        81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence            00000000  000         011     123667665 57888876655  45556777899999999999876543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.94  E-value=2.6e-05  Score=85.31  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHY  505 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~  505 (706)
                      .++||+|||||+||++||..|++.  +.+|+|||+.+...
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~--G~~V~llEr~~~~g   41 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLARE--GAQVLVIERGNSAG   41 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhC--CCeEEEEEcCCCCC
Confidence            368999999999999999999988  89999999977644

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.93  E-value=2.5e-05  Score=85.15  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|+|||||++|+++|..|+++  |++|+|||+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS--GLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence            36899999999999999999998  89999999876

>PRK05868 hypothetical protein; Validated

Probab=97.93  E-value=3.9e-05  Score=82.40  Aligned_cols=36  Identities=25%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |++|+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Confidence            67899999999999999999987  8999999997654

>PRK07045 putative monooxygenase; Reviewed

Probab=97.92  E-value=2.9e-05  Score=84.06  Aligned_cols=37  Identities=24%  Similarity=0.467  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      .+++|+|||||+||+++|..|++.  |++|+|+|+.+..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~--G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGAR--GHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhc--CCcEEEEeCCCcc
Confidence            457999999999999999999998  9999999988753

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.92  E-value=2.5e-05  Score=81.03  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=31.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||+||+++|..|++.  +.+|+|||+.+..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~--g~~v~vie~~~~~   35 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK--GLRVLLLEKKSFP   35 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCC
Confidence            5899999999999999999987  8899999997754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.92  E-value=3.5e-05  Score=83.33  Aligned_cols=35  Identities=29%  Similarity=0.604  Sum_probs=31.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +++||+|||||++|+++|..|++.  +.+|+|||+.+
T Consensus         2 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~l~E~~~   36 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATALGFAKQ--GRSVAVIEGGE   36 (384)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC--CCcEEEEcCCC
Confidence            457999999999999999999987  89999999865

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.92  E-value=1.9e-05  Score=85.63  Aligned_cols=37  Identities=27%  Similarity=0.528  Sum_probs=33.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+.+||+|||||++|+++|..|++.  +.+|+|||+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARA--GASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCCC
Confidence            3457999999999999999999987  899999999764

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.92  E-value=3.7e-05  Score=83.31  Aligned_cols=40  Identities=25%  Similarity=0.403  Sum_probs=35.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQP  508 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~  508 (706)
                      +|||+|||||+||.+||+.|++.  +.+|+|+|+.+.+.+.+
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~--G~~VlvlEk~~~~G~k~   42 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKA--GLDVLVLEKGSEPGAKP   42 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHc--CCeEEEEecCCCCCCCc
Confidence            68999999999999999999998  69999999987766443

>PLN02697 lycopene epsilon cyclase

Probab=97.91  E-value=2.1e-05  Score=87.21  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      .++||+|||||+||+++|..+.+.  +.+|+|||+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~--Gl~V~LIe~~  140 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKL--GLNVGLIGPD  140 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC--CCcEEEecCc
Confidence            468999999999999999999987  8999999974

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.91  E-value=8e-05  Score=80.95  Aligned_cols=60  Identities=8%  Similarity=-0.026  Sum_probs=49.6

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.++..|.+++++++|++|..++ +.+..+.+.+|+++.|+.||..+...|+
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            46788888888999999999999999997543 4455555668899999999999888876

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.91  E-value=2.7e-05  Score=84.39  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+||+|||||++|+++|..|++.  |++|+|||+.+.
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~~   41 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARA--GASVALVAPEPP   41 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCCC
Confidence            346899999999999999999998  899999999864

>PRK06185 hypothetical protein; Provisional

Probab=97.90  E-value=0.00013  Score=79.57  Aligned_cols=58  Identities=2%  Similarity=-0.063  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEEE--EEeCCCc-eEEeecEEEECCCCCch
Q psy8791         267 FYAEKIHDILIG-RGVDVHKGKALVEIDLANKEAV--FKSEDKT-ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v~--~~~~~~g-~~i~~D~vI~a~G~~~~  324 (706)
                      .+.+.+.+.+.+ .|++++.++++.++..+++.+.  ....++| .++.+|+||.|.|....
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~  170 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR  170 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence            455566666655 4899999999999976665543  1223355 47999999999998764

>PRK07236 hypothetical protein; Provisional

Probab=97.90  E-value=3.4e-05  Score=83.45  Aligned_cols=38  Identities=18%  Similarity=0.131  Sum_probs=33.8

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .|.+++|+|||||++|+++|..|++.  +.+|+|+|+.+.
T Consensus         3 ~~~~~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   40 (386)
T PRK07236          3 HMSGPRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT   40 (386)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence            34567999999999999999999998  899999998764

>PRK09126 hypothetical protein; Provisional

Probab=97.89  E-value=6.2e-05  Score=81.68  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|+|||||++|+++|..|+++  |++|+|+|+.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGS--GLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCc
Confidence            47899999999999999999998  999999999864

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.88  E-value=3.5e-05  Score=84.23  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~~   66 (706)
                      .+|+|||||+|||++|..|++.  + .+|+|+|+.+.
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence            4799999999999999999998  6 59999999876

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR00275 flavoprotein, HI0933 family

Probab=97.87  E-value=1.8e-05  Score=85.71  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             cccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         471 GVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       471 vIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +|||||+||++||..+++.  +.+|+|+|+++..
T Consensus         1 vIIGgG~aGl~aAi~aa~~--G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE--GLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc--CCcEEEEecCccc
Confidence            6999999999999999987  7899999998764

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.86  E-value=3.8e-05  Score=83.21  Aligned_cols=34  Identities=38%  Similarity=0.514  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||+|||||+||++||..|++.  |++|+|+|+++.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~--G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA--GIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence            4899999999999999999999  999999999754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06126 hypothetical protein; Provisional

Probab=97.86  E-value=0.00014  Score=82.55  Aligned_cols=58  Identities=9%  Similarity=0.087  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEEEE--EeCCCc--eEEeecEEEECCCCCch
Q psy8791         267 FYAEKIHDILIG-RGVDVHKGKALVEIDLANKEAVF--KSEDKT--ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v~~--~~~~~g--~~i~~D~vI~a~G~~~~  324 (706)
                      .+.+.+.+.+++ .|+++++++++++++.+++.++.  ...++|  .++.+|+||.|.|....
T Consensus       127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             HHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence            455566666665 58999999999999876654443  222345  37899999999998764

>PRK07588 hypothetical protein; Provisional

Probab=97.86  E-value=5.8e-05  Score=81.87  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||++|+++|..|++.  +.+|+|+|+.+..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~~   35 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPEL   35 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCCc
Confidence            3799999999999999999987  8999999987643

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.86  E-value=4.1e-05  Score=83.19  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=32.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+|+|||||++|+++|..|++.  +.+|+|+|+.+..
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCccc
Confidence            46899999999999999999997  8999999997653

>PRK09897 hypothetical protein; Provisional

Probab=97.86  E-value=3e-05  Score=86.04  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|+|||||++|+++|.+|.+.....+|+|||++..
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~   37 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE   37 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            4689999999999999999988744579999999764

>PRK08013 oxidoreductase; Provisional

Probab=97.85  E-value=4.4e-05  Score=82.99  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.+||+|||||++|+++|..|++.  +.+|+|||+.+.
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~--G~~v~viE~~~~   37 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGS--GLRVAVLEQRVP   37 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC--CCEEEEEeCCCC
Confidence            457999999999999999999987  899999998765

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.85  E-value=5.4e-05  Score=82.82  Aligned_cols=41  Identities=20%  Similarity=0.438  Sum_probs=35.5

Q ss_pred             CcccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         462 GVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       462 ~~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .++...+||+|||||+||+++|..|++.  +.+|+|+|+.+..
T Consensus        13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~   53 (415)
T PRK07364         13 STRSLTYDVAIVGGGIVGLTLAAALKDS--GLRIALIEAQPAE   53 (415)
T ss_pred             CCCccccCEEEECcCHHHHHHHHHHhcC--CCEEEEEecCCcc
Confidence            3444568999999999999999999998  8999999997754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.84  E-value=5.3e-05  Score=82.09  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=32.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||+||+++|..|.+.  +.+|+|+|+++..
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQS--GLRVALLAPRAPP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCc
Confidence            46999999999999999999987  8899999987653

>PRK11445 putative oxidoreductase; Provisional

Probab=97.83  E-value=4.6e-05  Score=81.21  Aligned_cols=34  Identities=18%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+||+|||||+||+++|..|++.   .+|+|+|+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence            68999999999999999999874   79999998764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.83  E-value=0.00046  Score=76.70  Aligned_cols=59  Identities=10%  Similarity=0.073  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC--CC--ceEEeecEEEECCCC-Cch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE--DK--TERLPYAIMHVTPPM-GPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~--~~--g~~i~~D~vI~a~G~-~~~  324 (706)
                      ..+...+.+.+++.|++++.++++.++..++++++.+..  .+  ...+.++.||+|+|- ..+
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n  194 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESN  194 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCC
Confidence            467777888889999999999999998865555543322  22  346889999999985 444

>PRK06753 hypothetical protein; Provisional

Probab=97.80  E-value=6.1e-05  Score=81.09  Aligned_cols=35  Identities=20%  Similarity=0.458  Sum_probs=31.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ++|+|||||+||+++|..|++.  +.+++|+|+++..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~~   35 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNESV   35 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcc
Confidence            3799999999999999999998  8999999998764

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.80  E-value=4e-05  Score=82.82  Aligned_cols=33  Identities=24%  Similarity=0.532  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCCC
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTDD   66 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~~   66 (706)
                      ||+|||||+||+++|..|+++  | ++|+|+|+.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~--G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL--GKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC--CCceEEEEeCCCc
Confidence            699999999999999999999  9 99999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.79  E-value=9.3e-05  Score=79.19  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ||+|||||+||+++|..|++..++.+|+++|+.+.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~   35 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT   35 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            68999999999999999987656899999999763

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.77  E-value=0.00035  Score=73.56  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ   70 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~   70 (706)
                      ....+|||||+|++||++|+.|.+.  |++|+|+|.+++....
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka--G~~v~ilEar~r~GGR   45 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA--GYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc--CcEEEEEeccCCcCce
Confidence            3467999999999999999999999  9999999999985544

>PRK07190 hypothetical protein; Provisional

Probab=97.77  E-value=6.6e-05  Score=83.35  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~--Gi~V~llEr~~~~   40 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLC--GLNTVIVDKSDGP   40 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc--CCCEEEEeCCCcc
Confidence            357999999999999999999887  8899999997653

>PRK07045 putative monooxygenase; Reviewed

Probab=97.75  E-value=8.6e-05  Score=80.42  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ++++|+|||||+||+++|..|++.  +.+|+|+|+.+..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~--G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGAR--GHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhc--CCcEEEEeCCCcc
Confidence            467999999999999999999998  8999999987754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.74  E-value=0.0001  Score=79.62  Aligned_cols=33  Identities=27%  Similarity=0.523  Sum_probs=31.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      ++||+|||||++|+++|..|++.  +.+|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA--GLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccC
Confidence            57999999999999999999998  8999999997

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.73  E-value=8e-05  Score=80.60  Aligned_cols=32  Identities=22%  Similarity=0.521  Sum_probs=30.2

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      |||+|||||+||+++|+.|++.  +.+|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~--G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA--GIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECC
Confidence            6899999999999999999987  8999999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=97.72  E-value=0.0001  Score=78.47  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++||+|||||+||+++|..|++.   ++|+|+|+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence            36999999999999999999885   79999999874

>PRK09126 hypothetical protein; Provisional

Probab=97.72  E-value=9e-05  Score=80.40  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||+|||||++|+++|..|++.  +.+|+|+|+.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGS--GLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCc
Confidence            57999999999999999999998  899999999765

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.69  E-value=9.2e-05  Score=80.66  Aligned_cols=35  Identities=23%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      |..+||+|||||++|+++|..|.+.  +.+|+|+|+.
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~--G~~v~viE~~   36 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKES--DLRIAVIEGQ   36 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhC--CCEEEEEcCC
Confidence            4567999999999999999999887  8999999985

>KOG2665|consensus

Probab=97.69  E-value=0.0001  Score=72.89  Aligned_cols=75  Identities=11%  Similarity=-0.116  Sum_probs=52.6

Q ss_pred             eCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-----EEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         257 TGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-----EAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-----~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      .+...+..-..+...+-+.++..|-.+.++.++..+...+.     .+++ ....++++++..+|-|+|+..+-..+.++
T Consensus       187 sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv-~ngk~ee~r~~~~vtc~gl~sdr~aa~sg  265 (453)
T KOG2665|consen  187 SPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVV-LNGKGEEKRTKNVVTCAGLQSDRCAALSG  265 (453)
T ss_pred             CCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEE-ecCccceeEEeEEEEeccccHhHHHHHhC
Confidence            33444443344555666668899999999999999876543     1333 23357899999999999999886666665


Q ss_pred             C
Q psy8791         332 L  332 (706)
Q Consensus       332 l  332 (706)
                      .
T Consensus       266 c  266 (453)
T KOG2665|consen  266 C  266 (453)
T ss_pred             C
Confidence            5

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.67  E-value=6e-05  Score=83.39  Aligned_cols=34  Identities=35%  Similarity=0.627  Sum_probs=31.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      |+||||||+|.||++||..+++.  +.+|+|||+.+
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~--G~~V~liek~~   34 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKK--GFDVTIIGPGI   34 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            58999999999999999999887  78999999964

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.66  E-value=0.00012  Score=79.65  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .+||+|||||++|+++|..|++.  +.+|+|||+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS--GLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence            36899999999999999999887  89999999875

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.66  E-value=4.4e-05  Score=72.42  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+||+|||||++||+||++|++.  +++|.+||++..
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~   51 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLS   51 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS
T ss_pred             cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCC
Confidence            47999999999999999999999  999999999875

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.66  E-value=9.1e-05  Score=74.50  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||+||+++|..+++.  +.+|+|+|+++..
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~--G~~V~vlEk~~~~   56 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKN--GLKVCVLERSLAF   56 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            57999999999999999999987  7899999997754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.66  E-value=7.3e-05  Score=75.44  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||+||++||..|.+.  +.+|+|+|+++..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~--G~~V~liEk~~~~   60 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKA--GLKVAVFERKLSF   60 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCC
Confidence            46999999999999999999886  8899999987653

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.65  E-value=2.8e-05  Score=82.97  Aligned_cols=40  Identities=28%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             CCcEEEec-eEEEEEcCCCe---EEcCCCcEEeeCEEEEecCccc
Q psy8791         595 SGATWVKD-KIVSFDPENNR---VRTQAGSEISYEYMIVASGIQM  635 (706)
Q Consensus       595 ~gv~~~~~-~v~~id~~~~~---V~~~~g~~i~yd~lViAtGs~~  635 (706)
                      .|++++.+ +|++|+.+...   |.+.+|+ +.+|++|+|+|...
T Consensus       160 ~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  160 AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred             hhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence            69999776 99999987765   6678886 99999999999854

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06996 hypothetical protein; Provisional

Probab=97.65  E-value=0.0011  Score=72.06  Aligned_cols=59  Identities=7%  Similarity=-0.133  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCC-Cc-eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED-KT-ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~-~g-~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.|++++.++++.+++.++..+++...+ +| +++.+|+||-|-|...+
T Consensus       115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s  175 (398)
T PRK06996        115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFH  175 (398)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCch
Confidence            4577788888888999999999999997766656554322 22 68999999999996443

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.64  E-value=0.00014  Score=79.77  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|+|+.+
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~--G~~VlllEr~~   72 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKG--GIETFLIERKL   72 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Confidence            357999999999999999999988  89999999865

>KOG2415|consensus

Probab=97.63  E-value=0.00038  Score=71.46  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh----cCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSK----LGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~----~~~~~Vtlie~~~~   66 (706)
                      ..||+|||||+|||+||.+|++.    ..+.+|.|+|+...
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~  116 (621)
T KOG2415|consen   76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE  116 (621)
T ss_pred             cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence            46899999999999999999876    35689999999875

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.63  E-value=4.7e-05  Score=73.88  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |..|+|||+|.||++||..|++.  +.+|+|+||+.-
T Consensus         1 ~~siaIVGaGiAGl~aA~~L~~a--G~~vtV~eKg~G   35 (331)
T COG3380           1 MPSIAIVGAGIAGLAAAYALREA--GREVTVFEKGRG   35 (331)
T ss_pred             CCcEEEEccchHHHHHHHHHHhc--CcEEEEEEcCCC
Confidence            34699999999999999999998  899999999643

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.63  E-value=0.00015  Score=78.65  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=31.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhh-cCCCcEEEECCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSR-LGKGQVSIVEPT  501 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~-~~~~~i~vid~~  501 (706)
                      |+++||+|||||+||+++|..|++. ..+.+|+|+|+.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4578999999999999999999874 236899999984

>KOG0399|consensus

Probab=97.62  E-value=9.2e-05  Score=83.96  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=34.3

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+.-++|.|||+|+||++||-+|-+.  ++.|+|+|+++..
T Consensus      1781 ~~rtg~~vaiigsgpaglaaadqlnk~--gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKA--GHTVTVYERSDRV 1820 (2142)
T ss_pred             ccccCcEEEEEccCchhhhHHHHHhhc--CcEEEEEEecCCc
Confidence            344567999999999999999999988  8999999987653

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.62  E-value=0.00019  Score=79.36  Aligned_cols=34  Identities=35%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++||||||||.|||+||..+++.  |.+|+|||+.+
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~--G~~V~liek~~   34 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKK--GFDVTIIGPGI   34 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            37999999999999999999998  89999999964

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.62  E-value=0.00018  Score=77.85  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=31.3

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ||+|||||+||+++|..|++.  +.+|+|+|+.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~--G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS--GLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC--CCEEEEEeCCCcc
Confidence            689999999999999999998  8999999998764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08244 hypothetical protein; Provisional

Probab=97.62  E-value=0.00011  Score=82.10  Aligned_cols=35  Identities=17%  Similarity=0.458  Sum_probs=32.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~--G~~v~viEr~~~~   37 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALA--GVKTCVIERLKET   37 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            6899999999999999999998  8999999997653

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.60  E-value=0.00019  Score=77.84  Aligned_cols=34  Identities=38%  Similarity=0.542  Sum_probs=30.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +||+|||||+||++||..|++.  +.+|+|+|+.+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~--G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA--GIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence            4899999999999999999988  899999998643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.59  E-value=0.0002  Score=77.60  Aligned_cols=36  Identities=25%  Similarity=0.440  Sum_probs=32.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.+||+|||||++|+++|..|++.  +.+|+|||+.+.
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~   39 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQH--GFSVAVLEHAAP   39 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcC--CCEEEEEcCCCC
Confidence            468999999999999999999987  899999998753

>KOG0029|consensus

Probab=97.59  E-value=7.9e-05  Score=81.93  Aligned_cols=39  Identities=28%  Similarity=0.401  Sum_probs=35.6

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ....+++|+|||||.|||+||++|.+.  |++|+|+|.+++
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdR   49 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDR   49 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCC
Confidence            445567999999999999999999999  999999999997

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.59  E-value=8.4e-05  Score=79.20  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |.++||||||||..|+++|..|+++.|+++|+|+|+.+..
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            3578999999999999999999999888999999997653

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.58  E-value=5.7e-05  Score=80.54  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=33.1

Q ss_pred             CCcEEEeceEEEEEcCCC----eEEcCCCcEEeeCEEEEecCc
Q psy8791         595 SGATWVKDKIVSFDPENN----RVRTQAGSEISYEYMIVASGI  633 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~----~V~~~~g~~i~yd~lViAtGs  633 (706)
                      .+++++++.|+.+..++.    .|.+.+|..+.++.|||+||.
T Consensus       114 ~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445         114 PNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            589999999998876433    368899999999999999996

>PLN02985 squalene monooxygenase

Probab=97.57  E-value=0.00057  Score=76.29  Aligned_cols=65  Identities=14%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             HHHHHHhhchHHHHHHhhcceec-------CCCcccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         437 MFQMKKQVMPFLYWNLMLRGYWN-------GPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       437 ~~~l~~~~~~~~y~~~~~~~~~~-------~~~~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .|.+--+.+.|+.+....+.+..       ++.....++||+|||||.+|+++|..|++.  +.+|+|+|+.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DViIVGAG~aGlalA~aLa~~--G~~V~vlEr~~~   77 (514)
T PLN02985          6 LWTLLAFVLTWTVFYVTNRKKKATELADAVAEERKDGATDVIIVGAGVGGSALAYALAKD--GRRVHVIERDLR   77 (514)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhhhhcccCcCCCceEEEECCCHHHHHHHHHHHHc--CCeEEEEECcCC
Confidence            34444455566655543322111       222333467999999999999999999987  899999998653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.57  E-value=0.00039  Score=56.38  Aligned_cols=58  Identities=28%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             HHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE
Q psy8791         239 DEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV  300 (706)
Q Consensus       239 ~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~  300 (706)
                      +..+.+.+.    +++++++.+.+++  ++.+...+++.|+++||++++++.+++++.++..+.
T Consensus        15 A~~l~~~g~----~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~   74 (80)
T PF00070_consen   15 AEALAELGK----EVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE   74 (80)
T ss_dssp             HHHHHHTTS----EEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE
T ss_pred             HHHHHHhCc----EEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE
Confidence            344566663    5999999999985  789999999999999999999999999988765543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.57  E-value=0.00022  Score=80.85  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .++||+|||||++|+++|..|.+.  +.+|+|||+.+..
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~--G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQ--GVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCC
Confidence            457999999999999999999987  8999999998743

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.56  E-value=0.00027  Score=77.21  Aligned_cols=34  Identities=24%  Similarity=0.506  Sum_probs=30.4

Q ss_pred             cccccCcchhHHHHHHHHHhhcCC-CcEEEECCCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTDDH  504 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~~~  504 (706)
                      +|+|||||.||+++|..|++.  + .+|+|+|+.+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCcC
Confidence            799999999999999999987  5 599999997654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.56  E-value=7.6e-05  Score=81.61  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ||||||||+||++||..+++.  |.+|+|||+.++.
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~--G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA--GAKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT--TS-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHC--CCEEEEEECCccC
Confidence            799999999999999999999  9999999999873

>PRK06185 hypothetical protein; Provisional

Probab=97.55  E-value=0.00027  Score=77.06  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=32.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+++.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~--G~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARA--GVDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence            457999999999999999999987  899999998754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.54  E-value=0.00025  Score=80.21  Aligned_cols=38  Identities=18%  Similarity=0.208  Sum_probs=34.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +.++||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~--G~~v~v~Er~~~~   45 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQY--GVRVLVLERWPTL   45 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            4568999999999999999999987  8999999998754

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.54  E-value=0.00023  Score=76.88  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=31.5

Q ss_pred             cccccCcchhHHHHHHHHHhhcCC-CcEEEECCCCCCc
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTDDHY  505 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~~~~  505 (706)
                      ||+|||||+||+++|..|.+.  + .+|+|+|+.+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~--G~~~v~v~E~~~~~~   36 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL--GKIKIALIEANSPSA   36 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC--CCceEEEEeCCCccc
Confidence            689999999999999999998  8 9999999976543

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.52  E-value=0.0002  Score=79.61  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=30.5

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +||+|||||+||+.+|..+.+.  +.+|+||+++..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~--G~~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM--GAKTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC--CCCEEEEecccc
Confidence            5899999999999999999987  789999998643

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.51  E-value=0.00021  Score=77.01  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .++||+|||||..|+++|..|+++  +.+|+|||++.
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~~   36 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARR--GLRVLGLDRFM   36 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence            468999999999999999999998  78999999865

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.50  E-value=0.00016  Score=78.46  Aligned_cols=37  Identities=24%  Similarity=0.564  Sum_probs=33.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+||+|||||.+|+++|..|+++.++.+|+|+|+++.
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            4799999999999999999999867789999999753

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.48  E-value=0.00012  Score=71.14  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..|+|||+|+||++||+.|+..  |.+|||+||+.-
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~a--G~~vtV~eKg~G   35 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREA--GREVTVFEKGRG   35 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhc--CcEEEEEEcCCC
Confidence            4699999999999999999999  999999999873

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.47  E-value=7.4e-05  Score=79.60  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=32.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCc
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQP  508 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~  508 (706)
                      +||+|||||+||+++|..|++.  +.+|+|||+.+.....+
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~~~~~~   40 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPDPRPKG   40 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSSCCCSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhc--ccccccchhcccccccc
Confidence            5899999999999999999998  89999999987654333

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.44  E-value=0.0002  Score=78.68  Aligned_cols=42  Identities=24%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             CCcEEEeceEEEEEcCCC----eEEcCCCcEEeeCEEEEecCcccC
Q psy8791         595 SGATWVKDKIVSFDPENN----RVRTQAGSEISYEYMIVASGIQMY  636 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~----~V~~~~g~~i~yd~lViAtGs~~~  636 (706)
                      .||+++.++|+.++.+..    .|++.+|+++++|.+|=|||....
T Consensus       167 ~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  167 RGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             TT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             CCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            699999999988766543    467889999999999999997654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.43  E-value=0.00033  Score=77.02  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=29.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhc--CCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRL--GKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~--~~~~i~vid~~~  502 (706)
                      +||+|||||++|+++|..|++..  .+.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            58999999999999999998721  278999999954

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.00012  Score=78.29  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=34.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ   70 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~   70 (706)
                      ++|+|+|||.|||+||++|+++  |++|||+|.+++....
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~--g~~vt~~ea~~~~GGk   38 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADA--GYDVTLYEARDRLGGK   38 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhC--CCceEEEeccCccCce
Confidence            5899999999999999999999  9999999999975443

>PRK06126 hypothetical protein; Provisional

Probab=97.42  E-value=0.00033  Score=79.51  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHY  505 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~  505 (706)
                      .++|+|||||++|+++|..|+++  +.+|+|||+.+...
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~--G~~v~viEr~~~~~   43 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRR--GVDSILVERKDGTA   43 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence            46999999999999999999998  89999999876543

>KOG2853|consensus

Probab=97.42  E-value=0.0074  Score=60.74  Aligned_cols=94  Identities=14%  Similarity=0.126  Sum_probs=58.2

Q ss_pred             CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEE------------------EeCCCc--eEEeecEEEECCC
Q psy8791         262 LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVF------------------KSEDKT--ERLPYAIMHVTPP  320 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~------------------~~~~~g--~~i~~D~vI~a~G  320 (706)
                      .+.+-.+-..+++....+|+.+..| .|+.++-+..+ +..                  +..+|+  +.++|+++|.|.|
T Consensus       239 wfdpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG  317 (509)
T KOG2853|consen  239 WFDPWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG  317 (509)
T ss_pred             ccCHHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence            3445677778888888899999987 34444322111 111                  112222  4689999999999


Q ss_pred             CCchhhhhcCCCCCCCCceeeCccccccCCCCCEEEcc
Q psy8791         321 MGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIG  358 (706)
Q Consensus       321 ~~~~~~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~G  358 (706)
                      .+.-....-+|+-...|.+.|-- -.+ +....||++=
T Consensus       318 a~s~QvArlAgIG~g~g~L~vpl-Pie-pRKRyvyvi~  353 (509)
T KOG2853|consen  318 AWSGQVARLAGIGKGPGLLAVPL-PIE-PRKRYVYVIF  353 (509)
T ss_pred             ccHHHHHHHhccCCCCceeeecc-cCC-ccceeEEEEe
Confidence            99987777677755556665543 123 2334577764

>TIGR01810 betA choline dehydrogenase

Probab=97.42  E-value=0.004  Score=70.29  Aligned_cols=67  Identities=10%  Similarity=0.041  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCC-Cce---EEeecEEEECCCC-CchhhhhcCCCCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED-KTE---RLPYAIMHVTPPM-GPVPELATSRLVD  334 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~-~g~---~i~~D~vI~a~G~-~~~~~~~~~~l~~  334 (706)
                      ...++...+++.|++|++++.|.+|.-++++++.+... +++   .+.++.||+|.|. ..+.++..+|+-+
T Consensus       196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~  267 (532)
T TIGR01810       196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGD  267 (532)
T ss_pred             HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCC
Confidence            34455555567789999999999998666554443321 222   3589999999997 4446677777743

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.41  E-value=0.00037  Score=74.97  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      |+||+|||||++|+++|..|++.  +.+|+|+|+.+
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQK--GIKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcC--CCeEEEecCCC
Confidence            67999999999999999999987  89999999864

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.39  E-value=0.00044  Score=71.42  Aligned_cols=197  Identities=18%  Similarity=0.235  Sum_probs=103.7

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccc-cccCCCCcccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVKDKI  542 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~l~~~~~~~~~~~~  542 (706)
                      ++..+|++.||.|++-++.|..+.... +.++..+|+.+.+.|-|+...      .-..++.|. |.|+           
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmll------egstlQv~FlkDLV-----------   63 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLL------EGSTLQVPFLKDLV-----------   63 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCccc------CCccccccchhhhc-----------
Confidence            345789999999999999999988762 377899999999887774311      111222221 1111           


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCccccccc-c------ccc-ccccccchhhhcc---CCcEE--EeceEE---E
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGG-G------MKK-LSDSRRPMKSVLP---SGATW--VKDKIV---S  606 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~-~~~~~~~~~~~~~---~gv~~--~~~~v~---~  606 (706)
                                     ++.+|...+-+  + +|+.. +      ... ..-.+..+.++..   .+...  +..+|+   +
T Consensus        64 ---------------Tl~~PTs~ySF--L-NYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~  125 (436)
T COG3486          64 ---------------TLVDPTSPYSF--L-NYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISS  125 (436)
T ss_pred             ---------------cccCCCCchHH--H-HHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccc
Confidence                           12233222110  0 11110 0      000 0001122222222   12222  456677   5


Q ss_pred             EEcCCCe---EEcCCCcEEeeCEEEEecCcccCccCC-CCchhhhcccccccccc-cCccchhhhccC-ccEEEE--cHH
Q psy8791         607 FDPENNR---VRTQAGSEISYEYMIVASGIQMYYDRV-KGGTTSLEDRGKMRGVS-DGFSTVTWEQKH-KQYQLV--SPE  678 (706)
Q Consensus       607 id~~~~~---V~~~~g~~i~yd~lViAtGs~~~~p~i-~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~-k~vvVi--G~E  678 (706)
                      +|.+...   +.+.+++.+.++.|||++|.+|.+|+. ..+..  +     +-++ +.+.....+... ++|+||  |--
T Consensus       126 ~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f~~l~~--~-----~vfHss~~~~~~~~~~~~~~V~ViG~GQS  198 (436)
T COG3486         126 LDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCFRSLIG--E-----RVFHSSEYLERHPELLQKRSVTVIGSGQS  198 (436)
T ss_pred             cCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHHhCcCc--c-----ceeehHHHHHhhHHhhcCceEEEEcCCcc
Confidence            5555442   566777899999999999999998842 22110  0     1112 222222222233 349999  555


Q ss_pred             HHHHHHHHHhhhhhhh--ccccccccc
Q psy8791         679 IRAKAYDLTKRKMKKE--AQWIRFQEK  703 (706)
Q Consensus       679 ~A~~l~~~~~~~~~~~--~~~~~~~~~  703 (706)
                      .|..+.++..+--.+.  -.||.+...
T Consensus       199 AAEi~~~Ll~~~~~~~~~l~witR~~g  225 (436)
T COG3486         199 AAEIFLDLLNSQPPQDYQLNWITRSSG  225 (436)
T ss_pred             HHHHHHHHHhCCCCcCccceeeeccCC
Confidence            5666666665544444  577766543

>KOG2852|consensus

Probab=97.38  E-value=0.00051  Score=67.32  Aligned_cols=65  Identities=12%  Similarity=0.024  Sum_probs=42.7

Q ss_pred             chhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCC----CceEEeecEEEECCCCCchhhhhcC
Q psy8791         265 SPFYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSED----KTERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~----~g~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      |..+...+.+..+++ ||+++.| .|.++..+.+++..+...    .....+.+.+|+++|-+...++...
T Consensus       146 P~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~  215 (380)
T KOG2852|consen  146 PYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT  215 (380)
T ss_pred             HHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhcccc
Confidence            345666666665554 5999998 577886444444332221    2456788999999999988665543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.34  E-value=0.00019  Score=79.40  Aligned_cols=37  Identities=27%  Similarity=0.490  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ++|+|||||+|||+||+.|++...+++|+|+|++++.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~   37 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL   37 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence            4799999999999999999998334899999999863

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.31  E-value=0.0023  Score=67.76  Aligned_cols=78  Identities=15%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCE---EEEEeC--CCceEEeecEEEECCCCCchhhhhcCCC--CCCCC
Q psy8791         266 PFYAEKIHDILIGR-GVDVHKGKALVEIDLANKE---AVFKSE--DKTERLPYAIMHVTPPMGPVPELATSRL--VDQSG  337 (706)
Q Consensus       266 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~---v~~~~~--~~g~~i~~D~vI~a~G~~~~~~~~~~~l--~~~~G  337 (706)
                      ..+.+.+.+.+++. |++++++++|+.|+..++.   |.+...  .+..++.++.|++..|-..-+.+.++|+  ...-|
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyg  260 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYG  260 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccC
Confidence            56777777778777 9999999999999865432   333222  2446899999999999998899999887  22334


Q ss_pred             ceeeCc
Q psy8791         338 YVNVDK  343 (706)
Q Consensus       338 ~i~vd~  343 (706)
                      ..+|..
T Consensus       261 gfPVsG  266 (488)
T PF06039_consen  261 GFPVSG  266 (488)
T ss_pred             CCcccc
Confidence            455555

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07208 hypothetical protein; Provisional

Probab=97.28  E-value=0.00028  Score=78.77  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=43.4

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEEEe--CCCc--eEEeecEEEECCCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVFKS--EDKT--ERLPYAIMHVTPPMG  322 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~~~--~~~g--~~i~~D~vI~a~G~~  322 (706)
                      ...+.+.+.+.+++.|++++++++|++|..+++. +..+.  .++|  .++.+|.||+|++..
T Consensus       217 ~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        217 PGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             cchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            4578888889999999999999999999876543 32222  2234  368899999998753

>PLN02268 probable polyamine oxidase

Probab=97.26  E-value=0.00027  Score=77.81  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ++|+|||||++||+||+.|.+.  |++|+|+|++++.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~   35 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRI   35 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence            4799999999999999999998  8999999999973

>PRK08013 oxidoreductase; Provisional

Probab=97.26  E-value=0.00029  Score=76.60  Aligned_cols=58  Identities=7%  Similarity=0.012  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+.+. ||+++.++++++++.++..+.+. ..+|+++.+|+||-|-|....
T Consensus       111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~-~~~g~~i~a~lvVgADG~~S~  169 (400)
T PRK08013        111 SVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLT-LKDGSMLTARLVVGADGANSW  169 (400)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEE-EcCCCEEEeeEEEEeCCCCcH
Confidence            34556666666664 89999999999997665555443 347888999999999998754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.26  E-value=0.0003  Score=76.01  Aligned_cols=56  Identities=2%  Similarity=0.000  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHh-CCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         268 YAEKIHDILIG-RGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       268 ~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      +...+.+.+.+ .|++++.++++++++.+++.+.+ +.++|.++.+|+||-|.|..+.
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v-~~~~g~~~~~~lvIgADG~~S~  168 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRV-TLESGAEIEAKWVIGADGANSQ  168 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEE-EECCCCEEEeeEEEEecCCCch
Confidence            33344444444 47999999999999766555544 3457889999999999998765

>PLN02661 Putative thiazole synthesis

Probab=97.22  E-value=0.001  Score=69.11  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||++|+.||..|++. ++.+|+|||++...
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~  128 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSP  128 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCccc
Confidence            46999999999999999999863 46899999986543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.22  E-value=0.00033  Score=75.84  Aligned_cols=35  Identities=14%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++|+|||||++|+++|..|++.  |++|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence            46899999999999999999998  999999999984

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07538 hypothetical protein; Provisional

Probab=97.22  E-value=0.00072  Score=73.84  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=31.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +||+|||||+||+++|..|++.  +.+|+|+|+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence            4899999999999999999998  899999999764

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.21  E-value=0.00079  Score=72.02  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh--cCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSK--LGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~--~~~~~Vtlie~~~~   66 (706)
                      ++++=|||+|.|+|+||.+|-|.  .|+-+|+++|+.+.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~   40 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV   40 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence            56889999999999999999886  47889999998774

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.20  E-value=0.00023  Score=76.02  Aligned_cols=104  Identities=20%  Similarity=0.278  Sum_probs=67.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC----cccccc-----------cCccccC----cccc---
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ----PMFTLI-----------GGGMKKL----SDSR---   87 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~----p~~~~~-----------~~~~~~~----~~~~---   87 (706)
                      .+||+|||||.||+.||...+|.  |+++.|+.-+......    |+....           .+|....    ..+.   
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARm--G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~   81 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARM--GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRM   81 (621)
T ss_pred             CCceEEECCCccchHHHHhhhcc--CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhh
Confidence            48999999999999999999999  8999999876542111    221100           0110000    0000   


Q ss_pred             ----------------------ccccccc-C-CCcEEEEceeEEEEcCCC----EEEeCCCeEEEecEEEEccccc
Q psy8791          88 ----------------------RPMKSVL-P-SGATWVKDKIVSFDPENN----RVRTQAGSEISYEYMIVASGIQ  135 (706)
Q Consensus        88 ----------------------~~~~~~~-~-~~v~~i~~~v~~id~~~~----~v~~~~g~~~~yd~lviAtG~~  135 (706)
                                            ...++.+ . .++.++++.|+++..++.    -|.+.+|..+.++.+|++||.-
T Consensus        82 LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445          82 LNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             ccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence                                  0011111 1 578888899998776443    3678899999999999999963

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.20  E-value=0.00035  Score=77.61  Aligned_cols=38  Identities=21%  Similarity=0.439  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcC--CCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLG--KGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~--~~~Vtlie~~~~~   67 (706)
                      +++|+|||||++||+||++|+++.+  |++|+|+|+++..
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV   41 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence            4689999999999999999999755  7999999999863

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.16  E-value=0.00039  Score=54.26  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             ccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       472 IIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |||||.+|+++|..|++.  +.+|+|+|+++..
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCccc
Confidence            799999999999999998  8899999998764

...

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.14  E-value=0.0012  Score=71.84  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=31.5

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+|+|||||+||+++|..|++.  +.+|+|+|+.+..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~--G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAAR--GWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcc
Confidence            4799999999999999999987  8999999987653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.14  E-value=0.00097  Score=72.16  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +||+|||||++|+++|..|++.  +.+|+|||+.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence            5899999999999999999998  899999999774

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.13  E-value=0.00047  Score=73.41  Aligned_cols=47  Identities=21%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             CccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         342 DKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       342 d~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      ++ +|+....||+|++|.+..+.   -...|..||-.++.|+...+.|++.
T Consensus       322 ~~-~l~~k~~~~l~~AGqi~g~~---Gy~ea~a~G~~Ag~n~~~~~~g~~~  368 (436)
T PRK05335        322 DP-TLQLKKRPNLFFAGQITGVE---GYVESAASGLLAGINAARLALGKEP  368 (436)
T ss_pred             ch-hccccCCCCEEeeeeecCch---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44 89988899999999988762   2347899999999999999999876

>PRK07538 hypothetical protein; Provisional

Probab=97.13  E-value=0.00042  Score=75.71  Aligned_cols=34  Identities=26%  Similarity=0.533  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+|||||+||+++|..|++.  |++|+|||+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence            4899999999999999999998  999999999874

>PLN02985 squalene monooxygenase

Probab=97.12  E-value=0.00055  Score=76.44  Aligned_cols=38  Identities=18%  Similarity=0.410  Sum_probs=34.6

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..+..+||+|||||++|+++|..|++.  |++|+|+|+.+
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~--G~~V~vlEr~~   76 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKD--GRRVHVIERDL   76 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHc--CCeEEEEECcC
Confidence            455678999999999999999999998  89999999975

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.11  E-value=0.00049  Score=74.61  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|+|||||++|+++|..|++.  |++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~--G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA--GIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence            46899999999999999999998  999999999984

>PTZ00367 squalene epoxidase; Provisional

Probab=97.10  E-value=0.00058  Score=76.74  Aligned_cols=38  Identities=21%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++.++||+|||||++|+++|..|++.  |++|+|+|+.+
T Consensus        29 ~~~~~~dViIVGaGiaGlalA~aLar~--G~~V~VlEr~~   66 (567)
T PTZ00367         29 RTNYDYDVIIVGGSIAGPVLAKALSKQ--GRKVLMLERDL   66 (567)
T ss_pred             ccccCccEEEECCCHHHHHHHHHHHhc--CCEEEEEcccc
Confidence            334568999999999999999999998  89999999976

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.09  E-value=0.00097  Score=75.62  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .++.+|+|||||.+|+++|..|++.  +.+|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~--Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKK--GFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhc--CCeEEEEeccc
Confidence            4568999999999999999999998  89999999865

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.09  E-value=0.00052  Score=73.87  Aligned_cols=57  Identities=7%  Similarity=0.099  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      +.+.+.+.+.+.+. +++++.++++.++..+++.+.+. .+++ ++.+|+||-|-|....
T Consensus       104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~-~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIK-FDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEE-EcCC-EEeeCEEEEeCCCCch
Confidence            45666677777665 48899999999987655555543 3344 8999999999998654

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.08  E-value=0.0019  Score=70.52  Aligned_cols=65  Identities=3%  Similarity=-0.155  Sum_probs=50.1

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe---CCCc--eEEeecEEEECCCCCchhhhhcC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS---EDKT--ERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~---~~~g--~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      +..+.-.......+.|-++++.++|+++..+++ +..+.   ..+|  .++.++.||-|+|.+...++...
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~  232 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA  232 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence            456677777888889999999999999988876 43332   2233  35889999999999999777655

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.08  E-value=0.0015  Score=70.82  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++||+|||||++|+++|..|++.  +.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~--G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA--GIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence            46899999999999999999998  899999999774

>PTZ00367 squalene epoxidase; Provisional

Probab=97.07  E-value=0.0017  Score=72.96  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             ecCCCcccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         458 WNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       458 ~~~~~~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ..++...+..+||+|||||.+|+++|..|++.  +.+|+|+|+++
T Consensus        24 ~~~~~~~~~~~dViIVGaGiaGlalA~aLar~--G~~V~VlEr~~   66 (567)
T PTZ00367         24 RFKPARTNYDYDVIIVGGSIAGPVLAKALSKQ--GRKVLMLERDL   66 (567)
T ss_pred             ccCccccccCccEEEECCCHHHHHHHHHHHhc--CCEEEEEcccc
Confidence            33555555678999999999999999999987  89999999865

>KOG1276|consensus

Probab=97.07  E-value=0.00066  Score=70.34  Aligned_cols=38  Identities=21%  Similarity=0.290  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||.+||++|++|+++.++..|||+|..++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R   47 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR   47 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence            45799999999999999999999988889999999987

>KOG0685|consensus

Probab=97.07  E-value=0.00084  Score=70.74  Aligned_cols=40  Identities=28%  Similarity=0.499  Sum_probs=33.7

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ......+|||||||.|||+||.+|-+. ...+++|+|..++
T Consensus        17 ~~~~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~dR   56 (498)
T KOG0685|consen   17 KARGNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEASDR   56 (498)
T ss_pred             hccCCceEEEECCchHHHHHHHHHHHh-CCceEEEEEeccc
Confidence            334456999999999999999999976 3568999999996

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.06  E-value=0.00064  Score=76.03  Aligned_cols=66  Identities=8%  Similarity=-0.122  Sum_probs=48.3

Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEE--EeCCCc--eEEeecEEEECCCCCchhhhhc
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVF--KSEDKT--ERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~--~~~~~g--~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      .+..+...+.+...+.|++++.+++|.++..+++.+.+  ....+|  .++.++.||.|+|.+.+.++..
T Consensus       153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~  222 (508)
T PRK12266        153 DDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDD  222 (508)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhh
Confidence            34666667777788899999999999999766554322  221123  4789999999999998876543

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.05  E-value=0.00059  Score=74.19  Aligned_cols=59  Identities=8%  Similarity=0.096  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEEEE--EeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIG-RGVDVHKGKALVEIDLANKEAVF--KSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v~~--~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+.+ .|++++.+++|++++.+++.+.+  ...++++++.+|+||-|-|....
T Consensus       107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~  168 (400)
T PRK06475        107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM  168 (400)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence            3566666766655 48999999999999876555443  33345568999999999998764

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.05  E-value=0.00058  Score=75.82  Aligned_cols=52  Identities=12%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPP  320 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G  320 (706)
                      ..+.+.+.+.+.+  ++++++++|++|+.+++.+.+. +.+|+++.+|.||+|+.
T Consensus       226 ~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~-~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        226 STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEIS-FANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEE-ECCCCEEEeCEEEECCC
Confidence            4556666666644  6899999999998776665443 34677899999999985

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.04  E-value=0.00064  Score=74.08  Aligned_cols=33  Identities=24%  Similarity=0.551  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT   64 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~   64 (706)
                      .++|+|||||++|+++|..|++.  |++|+|||+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~--G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKES--DLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhC--CCEEEEEcCC
Confidence            46999999999999999999998  9999999996

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.04  E-value=0.0006  Score=76.32  Aligned_cols=58  Identities=10%  Similarity=0.088  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc-----eEEeecEEEECCCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT-----ERLPYAIMHVTPPMG  322 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g-----~~i~~D~vI~a~G~~  322 (706)
                      ...+.+.+.+.+++.|++|+++++|++|..+++.+..+...++     +++.+|.||.++...
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            5778899999999999999999999999876554322222232     678999999998763

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02576 protoporphyrinogen oxidase

Probab=97.03  E-value=0.00069  Score=75.96  Aligned_cols=39  Identities=31%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ..+++|+|||||++||+||++|++.. |++|+|+|++++.
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rv   48 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRV   48 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCC
Confidence            34578999999999999999999863 5899999999863

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.02  E-value=0.00072  Score=71.80  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||+|||||++|+++|.+|++.  |.+|+|+|+++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~   35 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNH   35 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC
Confidence            5899999999999999999987  899999999875

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.01  E-value=0.00034  Score=66.03  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.7

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ||+|+|||++||+||+.|.++  +.+|+|+|++.++
T Consensus        32 DViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls~   65 (262)
T COG1635          32 DVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSF   65 (262)
T ss_pred             cEEEECcCcchHHHHHHHHhC--CceEEEEEeeccc
Confidence            899999999999999999998  8999999997654

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.00  E-value=0.00063  Score=74.80  Aligned_cols=33  Identities=30%  Similarity=0.602  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHh----hcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTS----KLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~----~~~~~~Vtlie~~~   65 (706)
                      +||+|||||++|+++|..|++    .  |++|+|||+++
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~--G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTK--DLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccC--CCeEEEEeCCC
Confidence            489999999999999999998    5  89999999965

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02487 zeta-carotene desaturase

Probab=97.00  E-value=0.00095  Score=74.91  Aligned_cols=57  Identities=12%  Similarity=-0.052  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCC---C--EEEEEeC---CCceEEeecEEEECCCCC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLAN---K--EAVFKSE---DKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~--~v~~~~~---~~g~~i~~D~vI~a~G~~  322 (706)
                      ..+.+.+.+.|+++|++|+++++|++|..++   +  .++.+..   .+++++++|.||++++..
T Consensus       295 ~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        295 VRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            3588899999999999999999999997642   2  2333332   345678999999998854

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.95  E-value=0.0022  Score=74.46  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=31.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .+||+|||||.+|+++|..|.++  +.+|+|+|++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~--G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR--GWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC--CCeEEEEecCC
Confidence            36899999999999999999998  78999999864

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=96.95  E-value=0.00031  Score=76.85  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=27.5

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ||||||||+||++||..+++.  +.+|+|||+.+..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~--G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA--GAKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT--TS-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHC--CCEEEEEECCccC
Confidence            799999999999999999998  8999999997764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.94  E-value=0.00087  Score=75.98  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ....+|+|||||+|||++|..|+++  |++|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~--Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKK--GFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhc--CCeEEEEeccc
Confidence            3457999999999999999999999  99999999975

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.90  E-value=0.0011  Score=74.33  Aligned_cols=66  Identities=6%  Similarity=-0.130  Sum_probs=48.6

Q ss_pred             CCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCC-Cc--eEEeecEEEECCCCCchhhhh
Q psy8791         263 FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED-KT--ERLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       263 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~-~g--~~i~~D~vI~a~G~~~~~~~~  328 (706)
                      ..+..+...+.+..++.|++++.+++|.++..+++.+.+...+ .|  .++.++.||.|+|.+......
T Consensus       152 vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~  220 (502)
T PRK13369        152 VDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIH  220 (502)
T ss_pred             ecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence            3456677777778889999999999999987766543322111 12  368999999999999886655

>TIGR02731 phytoene_desat phytoene desaturase

Probab=96.88  E-value=0.00095  Score=73.90  Aligned_cols=56  Identities=20%  Similarity=0.171  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeC-CCCEEEEEeCCCce-----EEeecEEEECCCC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDL-ANKEAVFKSEDKTE-----RLPYAIMHVTPPM  321 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~~v~~~~~~~g~-----~i~~D~vI~a~G~  321 (706)
                      ..+.+.+.+.|++.|++|+++++|++|.. +++.++.+.+.+|+     ++.+|.||+|++.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            56778888889999999999999999963 33334322332333     7899999999854

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=96.87  E-value=0.0008  Score=64.03  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=29.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||+||++||+.|.+.  +.+|++||++...
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~   52 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSP   52 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-
T ss_pred             cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCC
Confidence            46999999999999999999998  8999999987654

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.85  E-value=0.0011  Score=75.71  Aligned_cols=57  Identities=23%  Similarity=0.314  Sum_probs=43.0

Q ss_pred             ccccccccccccccCCCC----CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791           8 PLKSYNLLSSSFSTSPLS----SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~----~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +.-+||.+.+.|-..-+.    ......||||||||.|||+||..+++.  |.+|+||||.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~lveK~~~   63 (617)
T PTZ00139          3 AVPAFNRLTRTFFSGHLSSAYPVIDHTYDAVVVGAGGAGLRAALGLVEL--GYKTACISKLFP   63 (617)
T ss_pred             cchhhhccccccccchhhhcccccccccCEEEECccHHHHHHHHHHHHc--CCcEEEEeccCC
Confidence            445677777766443322    122357999999999999999999988  899999999754

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.81  E-value=0.0012  Score=77.50  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+|||||+|||++|..|++..++++|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            489999999999999999999866899999999885

>TIGR02730 carot_isom carotene isomerase

Probab=96.81  E-value=0.0012  Score=73.86  Aligned_cols=60  Identities=17%  Similarity=0.019  Sum_probs=49.5

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.++++|++++.+++|++|..+++.+..+.+.+|+++++|.||+++|....
T Consensus       228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~  287 (493)
T TIGR02730       228 VGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT  287 (493)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence            356888889999999999999999999987666565556667888999999999887543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.79  E-value=0.0016  Score=72.94  Aligned_cols=61  Identities=8%  Similarity=0.111  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe--CCCc--eEEeecEEEECCC-CCchhh
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS--EDKT--ERLPYAIMHVTPP-MGPVPE  326 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~--~~~g--~~i~~D~vI~a~G-~~~~~~  326 (706)
                      ..+.+.+.+.+++.||+++++++++++..+++.|+.+.  .+++  .++.+|.||+|+| +.+|+.
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~  255 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKD  255 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHH
Confidence            45677788888999999999999999987655443221  1232  4689999999997 676643

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.78  E-value=0.0037  Score=71.70  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=33.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ...+||+|||||++|+++|..|++. .+.+++|||+.+..
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~~~   68 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKPGR   68 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCCCC
Confidence            3467999999999999999999983 27899999987653

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.77  E-value=0.0013  Score=71.94  Aligned_cols=60  Identities=10%  Similarity=0.003  Sum_probs=43.2

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC---CCce--EEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE---DKTE--RLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~---~~g~--~i~~D~vI~a~G~~~~  324 (706)
                      .+.+...+.+.++++|++++.+++++++..++++|+.+..   .+|+  ++.++.||+|+|-...
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            3567788889999999999999999999876666543322   3455  5789999999987765

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07121 hypothetical protein; Validated

Probab=96.77  E-value=0.0019  Score=72.21  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...||||||||.||++||.++++.  |.+|+||||.+.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~--G~~VillEK~~~   54 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAA--GARVLVLERAAG   54 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence            467999999999999999999998  899999999985

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.76  E-value=0.0015  Score=70.94  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHh-CCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         268 YAEKIHDILIG-RGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       268 ~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      +.+.+.+.+.+ .|++++.+++++++..+++.+.+. +++|.++.+|.||.|.|.+..
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~-~~~g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVT-LDDGETLTGRLLVAADGSHSA  170 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEE-ECCCCEEEeCEEEEecCCChh
Confidence            44455555554 589999999999987655555443 346778999999999998864

>PLN02568 polyamine oxidase

Probab=96.75  E-value=0.0017  Score=72.81  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhc---CCCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKL---GKGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~---~~~~Vtlie~~~~~   67 (706)
                      .++|+|||||.+||+||.+|++..   .+++|+|+|++++.
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            468999999999999999999871   13899999999863

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.72  E-value=0.0017  Score=74.26  Aligned_cols=68  Identities=6%  Similarity=-0.127  Sum_probs=50.4

Q ss_pred             CCchhHHHHHHHHHHhCCceEEcCCceEEEeCC--CCEEE---EEeCCCce--EEeecEEEECCCCCchhhhhcC
Q psy8791         263 FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLA--NKEAV---FKSEDKTE--RLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       263 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~v~---~~~~~~g~--~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      ..+..+...+.+.+++.|++++.+++|.++..+  ++.+.   +....+++  ++.+|.||.|+|.+...+....
T Consensus       229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~  303 (627)
T PLN02464        229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA  303 (627)
T ss_pred             EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence            356788888889999999999999999998754  23333   22112333  6899999999999988766544

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.71  E-value=0.0019  Score=74.67  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=35.3

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      .....++|+|||||++||+||++|.+.  |++|+|+|++++.
T Consensus       234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~v~E~~~r~  273 (808)
T PLN02328        234 EGVEPANVVVVGAGLAGLVAARQLLSM--GFKVVVLEGRARP  273 (808)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeccccC
Confidence            334567999999999999999999998  8999999999863

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.70  E-value=0.0016  Score=69.79  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             ccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         345 TLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       345 ~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      +|+....||+|.+|=...+.   --..|..||-+++-|++..+.|++.
T Consensus       323 ~l~~k~~~~lf~AGQi~G~~---GY~Eaaa~Gl~agina~~~~~~~~~  367 (433)
T TIGR00137       323 SLHFKDRQTLFFAGQLTGVE---GYVASTAGGWLAGINAARLALGEPL  367 (433)
T ss_pred             HhccCCCCCEEECcccccch---HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            78888899999999655542   3457899999999999999999875

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.69  E-value=0.0025  Score=72.96  Aligned_cols=49  Identities=31%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             cccccccCCCCCC----CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          15 LSSSFSTSPLSSS----SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        15 ~~~~~~~~~~~~~----~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++.|+|..-..+    ....||||||||.|||+||..+++.  |.+|+||||..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAl~Aae~--G~~VilveK~~   83 (635)
T PLN00128         31 LSRFFSTGGGRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLF   83 (635)
T ss_pred             hhhhcccccccccCcceeeecCEEEECccHHHHHHHHHHHhc--CCcEEEEEcCC
Confidence            5566666543311    1346999999999999999999998  89999999975

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.69  E-value=0.0076  Score=63.42  Aligned_cols=39  Identities=26%  Similarity=0.492  Sum_probs=34.6

Q ss_pred             CCcEE-EeceEEEEEcCCC---eEEcCCCcEEeeCEEEEecCc
Q psy8791         595 SGATW-VKDKIVSFDPENN---RVRTQAGSEISYEYMIVASGI  633 (706)
Q Consensus       595 ~gv~~-~~~~v~~id~~~~---~V~~~~g~~i~yd~lViAtGs  633 (706)
                      .|+++ ++++|+.|+.+..   .|++++|.++.+|+||+|.|.
T Consensus       186 ~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         186 LGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             cCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence            68998 7889999988775   578899999999999999995

>PLN02612 phytoene desaturase

Probab=96.69  E-value=0.0023  Score=72.46  Aligned_cols=55  Identities=13%  Similarity=0.073  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEEEEeCCCceEEeecEEEECCC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAVFKSEDKTERLPYAIMHVTPP  320 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~~~~~~~g~~i~~D~vI~a~G  320 (706)
                      ..+.+.+.+.|++.|++|+++++|.+|+.+ ++.++.+.+.+|+++++|.||+|++
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            567788888999999999999999999863 3333333344788999999999975

>PLN02529 lysine-specific histone demethylase 1

Probab=96.68  E-value=0.0021  Score=73.85  Aligned_cols=38  Identities=24%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ....++|+|||||++||+||..|+++  |++|+|+|+++.
T Consensus       157 ~~~~~~v~viGaG~aGl~aA~~l~~~--g~~v~v~E~~~~  194 (738)
T PLN02529        157 EGTEGSVIIVGAGLAGLAAARQLLSF--GFKVVVLEGRNR  194 (738)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHc--CCcEEEEecCcc
Confidence            34567999999999999999999999  999999999986

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.68  E-value=0.0016  Score=72.18  Aligned_cols=57  Identities=12%  Similarity=0.094  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCC---C--EEEEEeCCC---ceEEeecEEEECCCCC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLAN---K--EAVFKSEDK---TERLPYAIMHVTPPMG  322 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~--~v~~~~~~~---g~~i~~D~vI~a~G~~  322 (706)
                      ..+.+.+.+.|+++|++|+++++|++|..++   +  .++.+...+   ++++++|.||+|++..
T Consensus       219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            3456778899999999999999999997532   1  243222222   2568999999998854

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>KOG2820|consensus

Probab=96.66  E-value=0.0019  Score=64.99  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=32.4

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+..+++|||||--|+++|.+|.++  +.+|.++|+.+.
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~--g~killLeqf~~   41 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKR--GDKILLLEQFPL   41 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhc--CCeEEEEeccCC
Confidence            3457899999999999999999998  689999998653

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.66  E-value=0.0018  Score=74.27  Aligned_cols=36  Identities=31%  Similarity=0.486  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh-hcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTS-KLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~-~~~~~~Vtlie~~~~   66 (706)
                      .+++|+|||||++||++|..|++ .  |.+|+|||+.+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~--Gi~v~IiE~~~~   67 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFP--DITTRIVERKPG   67 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCC--CCcEEEEEcCCC
Confidence            46799999999999999999999 5  899999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.63  E-value=0.0019  Score=71.22  Aligned_cols=61  Identities=10%  Similarity=0.001  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEEEE--eCCCce--EEeecEEEECCCC-Cchhh
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAVFK--SEDKTE--RLPYAIMHVTPPM-GPVPE  326 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~~~--~~~~g~--~i~~D~vI~a~G~-~~~~~  326 (706)
                      ..+.+.+.+.+++.|++++.+++++++..+ ++.++.+  ...+++  .+.++.||+|+|- ..|+.
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~  196 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKE  196 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHH
Confidence            567788888999999999999999999754 3333221  122343  4789999999984 44433

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>KOG2614|consensus

Probab=96.63  E-value=0.0021  Score=66.75  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|||||||.+|+++|..|.++  |++|+|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~--G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK--GIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc--CCeEEEEeeccc
Confidence            46899999999999999999999  999999999664

>PRK07208 hypothetical protein; Provisional

Probab=96.63  E-value=0.0015  Score=72.95  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=34.3

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ||++++|+|||||.+|+++|..|+++  +.+|+|+|+++.
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~--g~~v~v~E~~~~   38 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKR--GYPVTVLEADPV   38 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            46788999999999999999999997  789999998765

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.61  E-value=0.0014  Score=72.96  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=33.6

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+++|+||||||++||+||..|++.  +.+|+|+|++..
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~--G~~V~VlE~~~~   37 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARA--GLKVTVLEKNDR   37 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhC--CCEEEEEEecCC
Confidence            3578999999999999999999998  999999998753

>KOG2844|consensus

Probab=96.61  E-value=0.0027  Score=69.32  Aligned_cols=82  Identities=5%  Similarity=-0.117  Sum_probs=65.9

Q ss_pred             CCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhh
Q psy8791         249 DAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       249 ~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~  328 (706)
                      +++.-.|+.+.+..+.|..+...+....+++|+.|+.++.|++|....+....+++.- ..+++..+|-|+|+++...-+
T Consensus       170 d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~-G~iet~~~VNaaGvWAr~Vg~  248 (856)
T KOG2844|consen  170 DDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPH-GSIETECVVNAAGVWAREVGA  248 (856)
T ss_pred             hHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccC-cceecceEEechhHHHHHhhh
Confidence            4456789999999998889999999999999999999999999976554444444433 369999999999999986555


Q ss_pred             cCC
Q psy8791         329 TSR  331 (706)
Q Consensus       329 ~~~  331 (706)
                      ..+
T Consensus       249 m~g  251 (856)
T KOG2844|consen  249 MAG  251 (856)
T ss_pred             hcC
Confidence            444

>PRK06996 hypothetical protein; Provisional

Probab=96.61  E-value=0.0053  Score=66.71  Aligned_cols=36  Identities=19%  Similarity=0.480  Sum_probs=30.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhc--CCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL--GKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~--~~~~i~vid~~~  502 (706)
                      .+||+|||||++|+++|..|++..  .+.+|+|+|+.+
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            469999999999999999999862  125799999865

>KOG2311|consensus

Probab=96.57  E-value=0.002  Score=67.53  Aligned_cols=50  Identities=26%  Similarity=0.415  Sum_probs=37.8

Q ss_pred             ccccccccccccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          10 KSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++...++++.++    +...++|||||||.||..||...+|.  |.+-+|+..+-
T Consensus        12 ~s~~~~Rr~~~~s----~~~~~dVvVIGgGHAG~EAAaAaaR~--Ga~TlLlT~~l   61 (679)
T KOG2311|consen   12 TSFPLPRRCVFSS----STSTYDVVVIGGGHAGCEAAAAAARL--GARTLLLTHNL   61 (679)
T ss_pred             ccCcchhhhhccc----CCCcccEEEECCCccchHHHHHHHhc--CCceEEeeccc
Confidence            3444444444332    25678999999999999999999998  88888888764

>PLN02676 polyamine oxidase

Probab=96.56  E-value=0.0027  Score=70.57  Aligned_cols=37  Identities=30%  Similarity=0.419  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~~   67 (706)
                      ..++|+|||||++||+||++|++.  +. +|+|+|+++..
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~--g~~~v~vlE~~~~~   62 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEA--GIEDILILEATDRI   62 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCCcEEEecCCCCC
Confidence            357899999999999999999998  77 69999999863

>KOG2853|consensus

Probab=96.54  E-value=0.011  Score=59.60  Aligned_cols=51  Identities=29%  Similarity=0.418  Sum_probs=37.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhc--CCCcEEEECCCCCCcCCcceEE-eeccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL--GKGQVSIVEPTDDHYYQPMFTL-IGGGMKK  519 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~--~~~~i~vid~~~~~~~~~~~~~-~~gg~~~  519 (706)
                      +-+|||||+|-.|.+.|..|+++.  .+.+|+|+|+++.  |...-+. -.||.|.
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt--ytqssT~lSvGGi~Q  139 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT--YTQSSTMLSVGGICQ  139 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc--ccccceeeeecceee
Confidence            358999999999999999998763  3479999998664  4444442 3455553

>KOG0029|consensus

Probab=96.51  E-value=0.002  Score=71.07  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+++++|||||||.||++||++|.+.  +.+|+|+|..+.
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdR   49 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDR   49 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCC
Confidence            34567999999999999999999998  889999998764

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.49  E-value=0.0033  Score=71.64  Aligned_cols=35  Identities=14%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ...||||||||.|||+||..+++.  |.+|+|||+..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~vleK~~   45 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARA--GLSVAVLSKVF   45 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccC
Confidence            346999999999999999999988  89999999964

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.48  E-value=0.0027  Score=71.18  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||+| |||+||.++++.  |.+|+|||+.+.
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~--G~~V~vlEk~~~   40 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAARE--GLSVALVEATDK   40 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHC--CCcEEEEecCCC
Confidence            5799999999 999999999998  899999999875

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.45  E-value=0.003  Score=71.87  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||||.|||+||..+++..++.+|+||||...
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            3689999999999999999998744589999999753

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.40  E-value=0.0026  Score=65.98  Aligned_cols=66  Identities=9%  Similarity=-0.005  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHhCCceEEcCCceEEE--eCCCCE---EEEEeCCCc---eEEeecEEEECCCCCch-hhhhcCCC
Q psy8791         267 FYAEKIHDILIGRGVDVHKGKALVEI--DLANKE---AVFKSEDKT---ERLPYAIMHVTPPMGPV-PELATSRL  332 (706)
Q Consensus       267 ~~~~~~~~~l~~~gV~v~~~~~v~~i--~~~~~~---v~~~~~~~g---~~i~~D~vI~a~G~~~~-~~~~~~~l  332 (706)
                      ....++...+++.|++|++++.|.+|  +.++++   |.+...+..   ..+.++.||+|.|.-.. .+|..+|+
T Consensus       194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            34566777776669999999999999  544554   444444333   46778999999997554 56666776

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.40  E-value=0.0033  Score=70.92  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...||||||||.|||+||..+++.  +.+|+||||.+.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~--G~~VilleK~~~   50 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRA--GRRVLVVTKAAL   50 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc--CCeEEEEEccCC
Confidence            357999999999999999999998  899999999764

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.40  E-value=0.0033  Score=71.63  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +.||||||||.|||+||..+++.  |.+|+|||+.+.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lieK~~~   37 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEA--GVHVDLFSLVPV   37 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHc--CCcEEEEEccCC
Confidence            45899999999999999999998  899999997653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.37  E-value=0.0038  Score=71.66  Aligned_cols=49  Identities=22%  Similarity=0.135  Sum_probs=37.2

Q ss_pred             cccccccCCCCC-----CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          15 LSSSFSTSPLSS-----SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        15 ~~~~~~~~~~~~-----~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +.+|..+++...     .....||||||||.|||+||..+++.  |.+|+|||++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~--G~~VilieK~~   68 (640)
T PRK07573         15 EEKWDRYKFHLKLVNPANKRKFDVIVVGTGLAGASAAATLGEL--GYNVKVFCYQD   68 (640)
T ss_pred             hhhhhhccccccccCCccccccCEEEECccHHHHHHHHHHHHc--CCcEEEEecCC
Confidence            445555544431     11346999999999999999999998  89999999753

>PRK08275 putative oxidoreductase; Provisional

Probab=96.37  E-value=0.0036  Score=70.93  Aligned_cols=51  Identities=16%  Similarity=0.187  Sum_probs=39.4

Q ss_pred             CceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         337 GYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       337 G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      |.|.||. ..+ |+.|++||+|||+... ......+...|+.++.++...+.+.
T Consensus       357 Ggi~~d~-~~~-t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~~~~  407 (554)
T PRK08275        357 SGVWVNE-KAE-TTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYVAGR  407 (554)
T ss_pred             CcEEECC-CCc-cCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6699998 566 8999999999997543 2344567888999999988776543

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.37  E-value=0.0029  Score=68.19  Aligned_cols=36  Identities=28%  Similarity=0.493  Sum_probs=33.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++|+|||||.+||++|.+|+++.|+.+|+|+|+++.
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r   36 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR   36 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            369999999999999999999988899999999764

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=96.34  E-value=0.0029  Score=67.26  Aligned_cols=35  Identities=29%  Similarity=0.473  Sum_probs=31.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+||+|||||+||+++|..|.+.  +.+|+|+|+++.
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~   35 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNH   35 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC
Confidence            57999999999999999999976  789999998654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.32  E-value=0.0041  Score=70.79  Aligned_cols=59  Identities=12%  Similarity=0.009  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC--CCce-EEeec-EEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE--DKTE-RLPYA-IMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~--~~g~-~i~~D-~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.||+++.++.++++..+++.|+.+..  .+++ .+.++ .||+|+|-.++
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            457777888889999999999999998866665443222  2333 47786 79999998775

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.30  E-value=0.0044  Score=70.16  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ...||||||+|.|||+||..+++.  |.+|+|||+.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~--G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADA--GKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            357999999999999999999998  89999999998

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.30  E-value=0.0028  Score=69.17  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=32.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+||+|||||..|+++|.+|++.  +.+|+|+|+++.
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~~   35 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHRY   35 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence            57999999999999999999997  789999999764

>KOG2311|consensus

Probab=96.29  E-value=0.0039  Score=65.38  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ...|||||||||+||+.||.+.++.  +.+.+++.++-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~--Ga~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL--GARTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc--CCceEEeeccc
Confidence            4678999999999999999999887  78888887753

>PLN02815 L-aspartate oxidase

Probab=96.29  E-value=0.0058  Score=69.34  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ....||||||+|.|||+||..+++.  + +|+|||+.+.
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~--G-~VvlleK~~~   62 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEY--G-TVAIITKDEP   62 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhC--C-CEEEEECCCC
Confidence            3457999999999999999999998  7 8999998764

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.27  E-value=0.0041  Score=71.05  Aligned_cols=45  Identities=11%  Similarity=0.113  Sum_probs=35.9

Q ss_pred             ccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      . .++ |+.||+||+|||+......++..+..+|++++.++...+..
T Consensus       389 ~-~~~-T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~  433 (608)
T PRK06854        389 Y-NRM-TTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD  433 (608)
T ss_pred             c-ccc-cCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence            6 566 88999999999986433456677888999999999887754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.27  E-value=0.0038  Score=71.60  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||||.|||+||..+++.  |.+|+|||+.+.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~--G~~V~lieK~~~   42 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARER--GLRVAVVCKSLF   42 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHC--CCCEEEEeccCC
Confidence            46999999999999999999998  899999999753

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.24  E-value=0.0041  Score=70.85  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ||||||||.|||+||..+++.  |.+|+||||.+.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~--G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKA--GLNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence            699999999999999999998  899999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.23  E-value=0.0043  Score=70.33  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..||||||||.|||+||..+++.  |.+|+||||.+
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~--G~~V~lveK~~   38 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASA--GFKVAVISKVF   38 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHC--CCcEEEEEccC
Confidence            46999999999999999999988  89999999874

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.21  E-value=0.0048  Score=70.17  Aligned_cols=52  Identities=19%  Similarity=0.349  Sum_probs=39.0

Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCC-------CchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPT-------SKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~-------~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      .|.|.||. ..+ |..|++||+|+|+....       ..+...+.-.|+.++++++..+.+
T Consensus       358 ~GGi~vd~-~~~-t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~  416 (582)
T PRK09231        358 MGGIETDQ-NCE-TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT  416 (582)
T ss_pred             CCCEEECC-CCc-cccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence            46799998 566 88999999999975211       123356778999999999887654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.18  E-value=0.0047  Score=70.49  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..||||||||.|||+||..+++.  +.+|+||||..
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~--G~~V~lveK~~   45 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEA--GLKTACITKVF   45 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccC
Confidence            46999999999999999999998  89999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.18  E-value=0.0049  Score=69.96  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||||.|||+||..+++..++.+|+|+||...
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~   39 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP   39 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            4689999999999999999998755689999999753

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.14  E-value=0.005  Score=70.15  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCC---CeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGK---GQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~---~~Vtlie~~~~   66 (706)
                      ..||||||||.|||+||..+++.  +   .+|+||||.+.
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~--G~~~~~V~lleK~~~   42 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAER--SGGKLSVAVVSKTQP   42 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHh--CCCCCcEEEEEcccC
Confidence            46899999999999999999998  5   79999998753

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.14  E-value=0.0067  Score=64.63  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=29.1

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ||+|||+|.|||++|..|.+.   .+|+|+.+.+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCCC
Confidence            899999999999999999764   799999987654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.14  E-value=0.0056  Score=69.63  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...||||||+|.|||+||..+++.  |.+|+|+|+.+.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~--G~~VivlEk~~~   45 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAAR--GLDTLVVEKSAH   45 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHC--CCcEEEEEcCCC
Confidence            357999999999999999999998  899999999985

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.14  E-value=0.0052  Score=69.92  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..||||||||.|||+||..+++.  |.+|+|+||..
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lleK~~   40 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQS--GQSCALLSKVF   40 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccC
Confidence            46899999999999999999988  89999999974

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.13  E-value=0.0067  Score=67.65  Aligned_cols=79  Identities=16%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  109 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~id  109 (706)
                      .++|+|||+|.+|+++|..|+++  |++|+++|+++....              ...   ...+...++++..+....  
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~~~~~--------------~~~---~~~l~~~gv~~~~~~~~~--   74 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLEL--GARVTVVDDGDDERH--------------RAL---AAILEALGATVRLGPGPT--   74 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhh--------------HHH---HHHHHHcCCEEEECCCcc--
Confidence            46899999999999999999988  899999998762100              000   112233577776543211  


Q ss_pred             cCCCEEEeCCCeEEEecEEEEccccccccCC
Q psy8791         110 PENNRVRTQAGSEISYEYMIVASGIQMYYDR  140 (706)
Q Consensus       110 ~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~  140 (706)
                                 ....+|.+|+++|..++.+.
T Consensus        75 -----------~~~~~D~Vv~s~Gi~~~~~~   94 (480)
T PRK01438         75 -----------LPEDTDLVVTSPGWRPDAPL   94 (480)
T ss_pred             -----------ccCCCCEEEECCCcCCCCHH
Confidence                       12458999999998876543

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.12  E-value=0.0062  Score=68.97  Aligned_cols=63  Identities=10%  Similarity=0.025  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC-CCc--eEEeec-EEEECC-CCCchhhhh
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE-DKT--ERLPYA-IMHVTP-PMGPVPELA  328 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~-~~g--~~i~~D-~vI~a~-G~~~~~~~~  328 (706)
                      ..+...+.+.+++.||+++++++++++..++++|+.+.. .++  ..+.++ .||+|+ |+.+|..+.
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~  275 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMR  275 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHH
Confidence            567778888999999999999999999866555442211 133  357785 577754 677775443

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.11  E-value=0.0043  Score=69.43  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=34.1

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+.++||||||||..|+++|+.|.++  +.+|+|||+++.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~r--Gl~V~LvEk~d~   40 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGR--GLSVLLCEQDDL   40 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            44578999999999999999999998  899999999754

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=96.11  E-value=0.0045  Score=68.49  Aligned_cols=37  Identities=22%  Similarity=0.473  Sum_probs=31.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ++|+|||||.|||+||+.|++..++.+|+|+|+++..
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~   37 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL   37 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence            3699999999999999999997334899999997653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.07  E-value=0.0057  Score=69.49  Aligned_cols=41  Identities=10%  Similarity=0.131  Sum_probs=32.3

Q ss_pred             CCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         349 VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       349 ~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      |+.|++||+|||+....-.++..+..+|.+++.++...+..
T Consensus       404 T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~  444 (614)
T TIGR02061       404 TTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILD  444 (614)
T ss_pred             cccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHh
Confidence            78999999999976432246667778899999998887754

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.06  E-value=0.0066  Score=68.71  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||+|.||++||..+++.  +.+|+|||+.+.
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~--G~~v~liEk~~~   40 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADS--GLEPLIVEKQDK   40 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            57999999999999999999998  899999999875

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.06  E-value=0.0087  Score=60.05  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      +.|++|||+|++|+..|..|++.  |.+|.|||++++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~HI   36 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNHI   36 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc--CCEEEEEeccccC
Confidence            36899999999999999988888  8999999999973

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.05  E-value=0.0058  Score=70.35  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||||.|||+||..+++.  |.+|+|||+.+.
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~--G~~VivleK~~~   39 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQR--GLDTIVLSLVPA   39 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence            46999999999999999999998  899999997543

>PLN03000 amine oxidase

Probab=96.00  E-value=0.013  Score=68.12  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||++||+||..|++.  +++|+|+|++++
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~--G~~V~VlE~~~r  218 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF--GFKVTVLEGRKR  218 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC--CCcEEEEEccCc
Confidence            457999999999999999999998  899999999986

>TIGR00551 nadB L-aspartate oxidase

Probab=95.99  E-value=0.0069  Score=67.56  Aligned_cols=34  Identities=32%  Similarity=0.547  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||||.|||+||..+++.  +. |+||||.+.
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~--G~-V~lleK~~~   35 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQ--GR-VIVLSKAPV   35 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhC--CC-EEEEEccCC
Confidence            36899999999999999999987  66 999999963

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=95.97  E-value=0.0054  Score=68.10  Aligned_cols=37  Identities=24%  Similarity=0.446  Sum_probs=32.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcC--CCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLG--KGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~--~~~i~vid~~~~  503 (706)
                      |+||+|||||.||++||..|.+..+  +.+|+|+|+++.
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r   40 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR   40 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence            4689999999999999999998755  689999998764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG2960|consensus

Probab=95.97  E-value=0.0018  Score=60.52  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .||||||+|-+||+||+.+.++.|+.+|.+||..-
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV  111 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence            48999999999999999999888999999999875

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.95  E-value=0.0068  Score=66.40  Aligned_cols=58  Identities=5%  Similarity=-0.048  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEEEEEe-CCCce--EEeecEEEECCCCCc
Q psy8791         266 PFYAEKIHDILIG-RGVDVHKGKALVEIDLANKEAVFKS-EDKTE--RLPYAIMHVTPPMGP  323 (706)
Q Consensus       266 ~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v~~~~-~~~g~--~i~~D~vI~a~G~~~  323 (706)
                      +.+.+.+.+.+++ .||+++.++.+.++..+++.+..+. ..+++  .+.++.||+|+|--.
T Consensus       128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence            4566777777765 5999999999999865555443211 11333  688999999999744

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=95.94  E-value=0.007  Score=60.71  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |+|++|||||.+|+.+|..+.+.  +.+|.|||+.++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~HI   36 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNHI   36 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc--CCEEEEEeccccC
Confidence            68999999999999999988887  8899999998764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.91  E-value=0.0071  Score=68.39  Aligned_cols=53  Identities=11%  Similarity=0.149  Sum_probs=38.7

Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCCC------chHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPTS------KTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~------~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      .|.+.||. ..| |..|++||+|+|+.....      .....+...|+.+++++++.+.+.
T Consensus       348 ~GGi~vd~-~~~-t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~~  406 (543)
T PRK06263        348 MGGIRINE-DCE-TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAENN  406 (543)
T ss_pred             cCCEEECC-CCc-ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhhc
Confidence            36689998 567 889999999998643211      123467889999999998876543

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=95.86  E-value=0.0067  Score=67.37  Aligned_cols=37  Identities=24%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhc----CCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL----GKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~----~~~~i~vid~~~~  503 (706)
                      |++|+|||||.|||+||..|.+..    .+.+|+|+|+++.
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r   41 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY   41 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence            568999999999999999998752    2368999999865

>PRK12839 hypothetical protein; Provisional

Probab=95.79  E-value=0.012  Score=66.85  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ...||+|||+|.+|++||..+++.  +.+|+|||+++..
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~--g~~v~~iek~~~~   43 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYG--GAKVLVVEKASTC   43 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            457999999999999999999998  8999999998753

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.78  E-value=0.0069  Score=64.70  Aligned_cols=36  Identities=28%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |+||+|||||++|+.+|..|+++  +.+|+|+|+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCcc
Confidence            45899999999999999999998  8999999976543

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.77  E-value=0.0077  Score=67.44  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=34.0

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++.++||+|||||..|+++|+.|.++  +.+|+|+|+++.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~r--G~~V~LlEk~d~   40 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKDDL   40 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCCC
Confidence            44568999999999999999999998  899999999853

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.77  E-value=0.015  Score=65.76  Aligned_cols=41  Identities=29%  Similarity=0.229  Sum_probs=35.0

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY   69 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~   69 (706)
                      .....+||||||+| +|++||..+++.  |.+|+|||+.+....
T Consensus        12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~--G~~v~v~Ek~~~~GG   52 (564)
T PRK12845         12 VRDTTVDLLVVGSG-TGMAAALAAHEL--GLSVLIVEKSSYVGG   52 (564)
T ss_pred             CCCceeCEEEECCc-HHHHHHHHHHHC--CCcEEEEecCCCCcC
Confidence            33456899999999 999999999998  899999999876443

>KOG1298|consensus

Probab=95.76  E-value=0.011  Score=60.56  Aligned_cols=38  Identities=21%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..+...||+|||||.+|-+.|+.|+|.  |-+|.||||.=
T Consensus        41 ~~~~~~DvIIVGAGV~GsaLa~~L~kd--GRrVhVIERDl   78 (509)
T KOG1298|consen   41 RNDGAADVIIVGAGVAGSALAYALAKD--GRRVHVIERDL   78 (509)
T ss_pred             ccCCcccEEEECCcchHHHHHHHHhhC--CcEEEEEeccc
Confidence            334557999999999999999999999  89999999974

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.75  E-value=0.0097  Score=67.19  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||+|.|||+||..++ .  +.+|+||||.+.
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~-~--G~~V~lieK~~~   42 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLP-S--HLRVGLITKDTL   42 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhh-c--CCCEEEEEccCC
Confidence            469999999999999999985 4  789999999764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=95.74  E-value=0.0073  Score=67.09  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +..+||||||+|.||++||..+++.  +.+|+|||+.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~--G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREA--GASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence            3467999999999999999999987  789999999763

>PLN02268 probable polyamine oxidase

Probab=95.72  E-value=0.0078  Score=66.23  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=30.7

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +|+|||||.|||+||+.|++.  +.+|+|+|.++..
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~   35 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRI   35 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence            799999999999999999987  7899999997753

>PRK02106 choline dehydrogenase; Validated

Probab=95.72  E-value=0.012  Score=66.90  Aligned_cols=66  Identities=11%  Similarity=-0.086  Sum_probs=44.3

Q ss_pred             HHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC--CCc--eEEeecEEEECCCCCch-hhhhcCCCCCC
Q psy8791         270 EKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE--DKT--ERLPYAIMHVTPPMGPV-PELATSRLVDQ  335 (706)
Q Consensus       270 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~--~~g--~~i~~D~vI~a~G~~~~-~~~~~~~l~~~  335 (706)
                      .++....++.|++|++++.|.+|.-++++++.+..  .++  ..+.++.||+|.|..-. .+|..+|+-+.
T Consensus       205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~  275 (560)
T PRK02106        205 AYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPA  275 (560)
T ss_pred             HhhccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCCh
Confidence            34445555678999999999999866554433322  122  24679999999997655 56666787443

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.70  E-value=0.0074  Score=65.09  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=30.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +||+|||||.+|+++|..|.++  +.+|+|+|+.+.
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~--g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH--GKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCC
Confidence            5899999999999999999987  789999998643

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2960|consensus

Probab=95.67  E-value=0.0044  Score=58.00  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ||||+|+|.||+++|..+.++.|+.+|.+||.+-
T Consensus        78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV  111 (328)
T ss_pred             ceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence            8999999999999999999888999999999753

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.66  E-value=0.051  Score=57.37  Aligned_cols=86  Identities=8%  Similarity=-0.038  Sum_probs=63.6

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL  332 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l  332 (706)
                      -.++.+......+..+...+.+.+++.|++++.+++|.++..+++.+..+.+++| ++.+|.||+|+|.....+.. ..+
T Consensus       124 ~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~-~~~  201 (337)
T TIGR02352       124 GAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLP-LPL  201 (337)
T ss_pred             eEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhccc-CCc
Confidence            3445555555557889999999999999999999999999877766665556555 79999999999998876543 333


Q ss_pred             CCCCCcee
Q psy8791         333 VDQSGYVN  340 (706)
Q Consensus       333 ~~~~G~i~  340 (706)
                      ...+|++.
T Consensus       202 ~~~~g~~~  209 (337)
T TIGR02352       202 RPVRGQPL  209 (337)
T ss_pred             cccCceEE
Confidence            44445443

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=95.63  E-value=0.013  Score=65.75  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++||||||||.|||.||..+++.  +.+|+|+|+.+.
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~--g~~V~l~~K~~~   40 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEA--GLKVALLSKAPP   40 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhc--CCcEEEEEcccc
Confidence            3567999999999999999999999  799999998653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=95.62  E-value=0.0093  Score=68.07  Aligned_cols=31  Identities=35%  Similarity=0.433  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        33 VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      |||||||.|||+||..+++.  |.+|+||||.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~--G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAEL--GYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHc--CCCEEEEEecC
Confidence            69999999999999999998  89999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=95.61  E-value=0.0089  Score=66.35  Aligned_cols=39  Identities=13%  Similarity=0.256  Sum_probs=34.6

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.++||+|||||..|+++|..|.++.++.+|+|+|+.+.
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            346799999999999999999998777889999998754

>KOG2415|consensus

Probab=95.60  E-value=0.0077  Score=62.22  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhc----CCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL----GKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~----~~~~i~vid~~~~  503 (706)
                      -+||+|||||+||++||++|++..    .+.+|.|+|+...
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~  116 (621)
T KOG2415|consen   76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE  116 (621)
T ss_pred             cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence            479999999999999999999863    3468999998654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.60  E-value=0.0095  Score=66.68  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||||||||.+|++||..|++.  +.+|+|+|+++..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~--G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR--GYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence            4899999999999999999998  8999999998643

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.56  E-value=0.015  Score=71.42  Aligned_cols=37  Identities=41%  Similarity=0.611  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +...||||||||.||++||..+++.  |.+|+|+||.+.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~--Ga~VivlEK~~~  443 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASC--GAQVILLEKEAK  443 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEccCC
Confidence            3457999999999999999999998  899999999865

>TIGR02734 crtI_fam phytoene desaturase

Probab=95.54  E-value=0.01  Score=66.58  Aligned_cols=32  Identities=28%  Similarity=0.462  Sum_probs=29.8

Q ss_pred             ccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         470 LGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       470 ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |||||||.+||+||..|++.  +.+|+|+|+++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~--G~~V~VlE~~~~   32 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAA--GIPVTVVEQRDK   32 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhC--CCcEEEEECCCC
Confidence            68999999999999999997  899999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=95.54  E-value=0.018  Score=65.65  Aligned_cols=60  Identities=7%  Similarity=-0.067  Sum_probs=44.8

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE--eCCCce-EEee-cEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK--SEDKTE-RLPY-AIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~--~~~~g~-~i~~-D~vI~a~G~~~~  324 (706)
                      ...+...+.+.+++.|++++.+++++++..+++.++.+  ..+++. ++.+ +.||+|+|-..+
T Consensus       216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            35677888889999999999999999987555554322  122333 5788 999999988776

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.52  E-value=0.009  Score=68.10  Aligned_cols=37  Identities=24%  Similarity=0.173  Sum_probs=32.7

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |++.||||||+|.||++||..+++.  +.+|+||++.+.
T Consensus         1 ~~~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lieK~~~   37 (589)
T PRK08641          1 MAKGKVIVVGGGLAGLMATIKAAEA--GVHVDLFSLVPV   37 (589)
T ss_pred             CCCccEEEECchHHHHHHHHHHHHc--CCcEEEEEccCC
Confidence            3567999999999999999999887  789999998654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.46  E-value=0.014  Score=70.07  Aligned_cols=51  Identities=14%  Similarity=0.158  Sum_probs=40.3

Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      .|.|.||. ..+ |+.|++||+|||+.... .+...+.-.|+.++.++...+.+
T Consensus       361 ~GGi~vd~-~~~-T~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~~~~  411 (897)
T PRK13800        361 ASGVWVDE-HAR-TTVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGTLAE  411 (897)
T ss_pred             cceEEecC-CCc-ccCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHHHhc
Confidence            47899998 566 89999999999987542 34456788899999999877643

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.45  E-value=0.015  Score=66.39  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..||||||||.|||+||..+++.   .+|+|+||.+
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~---~~VilleK~~   37 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR---ARTAVLTKLY   37 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC---CCEEEEeCCC
Confidence            46999999999999999999864   7999999864

>PRK09077 L-aspartate oxidase; Provisional

Probab=95.44  E-value=0.015  Score=65.68  Aligned_cols=35  Identities=31%  Similarity=0.664  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...||||||+|.|||+||..+++.   .+|+||||.+.
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~   41 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPL   41 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCC
Confidence            346999999999999999999874   69999999764

>TIGR02462 pyranose_ox pyranose oxidase

Probab=95.44  E-value=0.016  Score=64.64  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      +||+|||+|++|+.+|+.|++.  +++|++||++....
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~--g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA--GLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC--CCeEEEEeccCccC
Confidence            5899999999999999999998  89999999998643

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.42  E-value=0.011  Score=63.79  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .++||+|||||.+|+++|..|.++  +.+|+++|++..
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~~   38 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGEA   38 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCcc
Confidence            467999999999999999999998  679999998653

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.41  E-value=0.022  Score=64.89  Aligned_cols=60  Identities=8%  Similarity=-0.003  Sum_probs=42.9

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC-CCce--EEee-cEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE-DKTE--RLPY-AIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~-~~g~--~i~~-D~vI~a~G~~~~  324 (706)
                      ...+...+.+.+++.||+++.++.+.++..+++.|+.+.. .+++  ++.+ +.||+|+|--..
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            4567788889999999999999999998754555543322 2333  4675 678899876544

>PLN02976 amine oxidase

Probab=95.41  E-value=0.017  Score=69.61  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||++|+++|..|++.  |++|+|+|+++.
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~--G~~V~VlEa~~~  727 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQ--GFSVTVLEARSR  727 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHC--CCcEEEEeeccC
Confidence            457899999999999999999998  899999999875

>PRK07233 hypothetical protein; Provisional

Probab=95.40  E-value=0.012  Score=64.80  Aligned_cols=33  Identities=33%  Similarity=0.651  Sum_probs=30.3

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +|+|||||.|||+||..|.+.  +.+|+|+|+++.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~--G~~v~vlE~~~~   33 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR--GHEVTVFEADDQ   33 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCcEEEEEeCCC
Confidence            589999999999999999997  789999999764

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.39  E-value=0.015  Score=65.10  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..||||||+|.|||+||..+++   +.+|+|||+.+.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~   36 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTK   36 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCC
Confidence            4699999999999999999964   589999999764

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=95.39  E-value=0.013  Score=64.88  Aligned_cols=38  Identities=18%  Similarity=0.481  Sum_probs=33.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .++||||||||..|+++|..|+++.+..+|+|+|+.+.
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            46899999999999999999998755679999999753

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=95.38  E-value=0.014  Score=64.42  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=35.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYY  506 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~  506 (706)
                      ..+||||||||.+|+++|..|++..|+.+|+|+|+.+...+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~   45 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAI   45 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcch
Confidence            35699999999999999999999888899999999444443

>PLN02568 polyamine oxidase

Probab=95.35  E-value=0.013  Score=65.72  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             cccccccccCcchhHHHHHHHHHhhc---CCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRL---GKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~---~~~~i~vid~~~~  503 (706)
                      ++.++|+|||||.||++||+.|.+..   .+.+|+|+|+++.
T Consensus         3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~   44 (539)
T PLN02568          3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR   44 (539)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence            34568999999999999999999762   1378999999764

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.34  E-value=0.012  Score=66.92  Aligned_cols=38  Identities=29%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+||||||+|.||++||.++++..++.+|+|+|+...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            34699999999999999999998744579999999654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	706
1fcd_A	401	The Structure Of Flavocytochrome C Sulfide Dehydrog		5e-09
1fcd_A	401	The Structure Of Flavocytochrome C Sulfide Dehydrog		4e-07
3vrd_B	401	Crystal Structure Of Flavocytochrome C From Thermoc		5e-08
3vrd_B	401	Crystal Structure Of Flavocytochrome C From Thermoc		3e-07
3hyv_A	430	3-D X-Ray Structure Of The Sulfide:quinone Oxidored		2e-06
3hyv_A	430	3-D X-Ray Structure Of The Sulfide:quinone Oxidored		2e-06
3hyw_A	430	3-D X-Ray Structure Of The Sulfide:quinone Oxidored		2e-06
3hyw_A	430	3-D X-Ray Structure Of The Sulfide:quinone Oxidored		2e-06
3szw_A	437	Crystal Structure Of Sulfide:quinone Oxidoreductase		5e-05
3sy4_A	437	Crystal Structure Of Sulfide:quinone Oxidoreductase		8e-05
3sxi_A	437	Crystal Structure Of Sulfide:quinone Oxidoreductase		9e-05
3kpk_A	434	Crystal Structure Of Sulfide:quinone Oxidoreductase		1e-04
3t2z_A	437	Crystal Structure Of Sulfide:quinone Oxidoreductase		1e-04
3szf_A	437	Crystal Structure Of Sulfide:quinone Oxidoreductase		1e-04
3sx6_A	437	Crystal Structure Of Sulfide:quinone Oxidoreductase		1e-04
3t2y_A	434	Crystal Structure Of Sulfide:quinone Oxidoreductase		2e-04
3h8i_A	409	The First X-Ray Structure Of A Sulfide:quinone Oxid		8e-04

>pdb|1FCD|A Chain A, The Structure Of Flavocytochrome C Sulfide Dehydrogenase From A Purple Phototrophic Bacterium Chromatium Vinosum At 2.5 Angstroms Resolution Length = 401

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 124/317 (39%), Gaps = 61/317 (19%)
Query: 57  QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR 116
           +V+++EP  D+Y   +   + GG +KL   +     +   G   V D     DP+   V+
Sbjct: 29  EVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVK 88
Query: 117 TQAGSEISYEYMIVASGIQMYYDRVKGPSALINA-LGHCDLVRSFVTFPLFFPRRTLDFL 175
           T  G+E  Y+  +VA GI++ YD+++G S    A L H                      
Sbjct: 89  TAGGAEFGYDRCVVAPGIELIYDKIEGYSEEAAAKLPHA--------------------- 127
Query: 176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAV 235
              +G Q A+               + K L ++     G V+   PA P +C   P +  
Sbjct: 128 -WKAGEQTAI---------------LRKQLEDMA--DGGTVVIAPPAAPFRCPPGPYERA 169
Query: 236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRG-----VDVHKG--KA 288
                YL+ HK      +   +     F       K  + L G G     ++ H G   A
Sbjct: 170 SQVAYYLKAHKPMSKVIILDSSQT---FSKQSQFSKGWERLYGFGTENAMIEWHPGPDSA 226
Query: 289 LVEIDLANK--EAVFKSEDKTERLPYAIMHVTPPM--GPVPELATSRLVDQSGYVNVDKA 344
           +V++D      E  F  E K +     ++++ PP   G + ++A   L + +G+  VD  
Sbjct: 227 VVKVDGGEMMVETAFGDEFKAD-----VINLIPPQRAGKIAQIAG--LTNDAGWCPVDIK 279
Query: 345 TLQHVKYSNVFAIGDCS 361
           T +   +  +  IGD S
Sbjct: 280 TFESSIHKGIHVIGDAS 296

>pdb|1FCD|A Chain A, The Structure Of Flavocytochrome C Sulfide Dehydrogenase From A Purple Phototrophic Bacterium Chromatium Vinosum At 2.5 Angstroms Resolution Length = 401

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
           +++EP  D+Y   +   + GG +KL   +     +   G   V D     DP+   V+T 
Sbjct: 31  TLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTA 90
Query: 618 AGSEISYEYMIVASGIQMYYDRVKG 642
            G+E  Y+  +VA GI++ YD+++G
Sbjct: 91  GGAEFGYDRCVVAPGIELIYDKIEG 115

>pdb|3VRD|B Chain B, Crystal Structure Of Flavocytochrome C From Thermochromatium Tepidum Length = 401

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 57  QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR 116
           +V+++EP + +Y   M   + GG ++L+  R     +   G   V D  +  DP+   V+
Sbjct: 29  EVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGIDPDKKLVK 88
Query: 117 TQAGSEISYEYMIVASGIQMYYDRVKGPS-ALINALGHC 154
           T  G+E +Y+  +VA GI + YD+++G S AL   L H 
Sbjct: 89  TAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHA 127

>pdb|3VRD|B Chain B, Crystal Structure Of Flavocytochrome C From Thermochromatium Tepidum Length = 401

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
           +++EP + +Y   M   + GG ++L+  R     +   G   V D  +  DP+   V+T 
Sbjct: 31  TLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGIDPDKKLVKTA 90
Query: 618 AGSEISYEYMIVASGIQMYYDRVKGGTTSL 647
            G+E +Y+  +VA GI + YD+++G + +L
Sbjct: 91  GGAEFAYDRCVVAPGIDLLYDKIEGYSEAL 120

>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase From The Hyperthermophilic Bacterium Aquifex Aeolicus Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 69  YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 127
           + P F  +  G +K  D   P+  +LP     ++ +K  S DP+ N V TQ+G +I Y+Y
Sbjct: 41  FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 128 MIVASGIQMYY 138
           +++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111

>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase From The Hyperthermophilic Bacterium Aquifex Aeolicus Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 568 YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 626
           + P F  +  G +K  D   P+  +LP     ++ +K  S DP+ N V TQ+G +I Y+Y
Sbjct: 41  FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 627 MIVASGIQMYY 637
           +++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111

>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase Of The Hyperthermophilic Bacterium Aquifex Aeolicus In Complex With Decylubiquinone Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 69  YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 127
           + P F  +  G +K  D   P+  +LP     ++ +K  S DP+ N V TQ+G +I Y+Y
Sbjct: 41  FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 128 MIVASGIQMYY 138
           +++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111

>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase Of The Hyperthermophilic Bacterium Aquifex Aeolicus In Complex With Decylubiquinone Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 568 YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 626
           + P F  +  G +K  D   P+  +LP     ++ +K  S DP+ N V TQ+G +I Y+Y
Sbjct: 41  FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 627 MIVASGIQMYY 637
           +++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111

>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase Cys128ser Variant From Acidithiobacillus Ferrooxidans In Complex With Decylubiquinone Length = 437

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 9   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V      +GP  
Sbjct: 69  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
            I+ + H +  R+F  +
Sbjct: 129 SISTVDHAE--RAFAEY 143

>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase Ser126ala Variant From Acidithiobacillus Ferrooxidans Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 9   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V      +GP  
Sbjct: 69  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
            I  + H +  R+F  +
Sbjct: 129 AICTVDHAE--RAFAEY 143

>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase Cys128ala Variant From Acidithiobacillus Ferrooxidans Complexed With Decylubiquinone Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 9   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V      +GP  
Sbjct: 69  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
            I  + H +  R+F  +
Sbjct: 129 SIATVDHAE--RAFAEY 143

>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From Acidithiobacillus Ferrooxidans, C160a Mutant Length = 434

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 6   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 65
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V      +GP  
Sbjct: 66  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 125
Query: 147 LINALGHCDLVRSFVTF 163
            I  + H +  R+F  +
Sbjct: 126 SICTVDHAE--RAFAEY 140

>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From Acidithiobacillus Ferrooxidans Length = 437

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 9   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V      +GP  
Sbjct: 69  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
            I  + H +  R+F  +
Sbjct: 129 SICTVDHAE--RAFAEY 143

>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a Variant From Acidithiobacillus Ferrooxidans In Complex With Bound Trisulfide And Decylubiquinone Length = 437

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 9   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V      +GP  
Sbjct: 69  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
            I  + H +  R+F  +
Sbjct: 129 SICTVDHAE--RAFAEY 143

>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase Cys356ala Variant From Acidithiobacillus Ferrooxidans Complexed With Decylubiquinone Length = 437

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 9   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V      +GP  
Sbjct: 69  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
            I  + H +  R+F  +
Sbjct: 129 SICTVDHAE--RAFAEY 143

>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase His132ala Variant From Acidithiobacillus Ferrooxidans With Bound Disulfide Length = 434

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 35  VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 6   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 65
Query: 93  VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG 143
           V   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 66  VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPG 116

>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone Oxidoreductase: Insights Into Sulfide Oxidation Mechanism Length = 409

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 133/343 (38%), Gaps = 42/343 (12%)
Query: 35  VVGGGAAGCSMAAKFTSKL--GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS 92
           +V GG  G   AA    +L   K  V ++  +   Y++P    +  G++ + + +  +  
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSE 64
Query: 93  VLPS-GATWVKDKIVSFDPENNRVRTQ----AGSEISYEYMIVASGIQMYYDRVKGPSAL 147
            LP  G  + +  +   D +++ V       + +E  Y+Y+IV  G  +  + VKG    
Sbjct: 65  ALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG---- 120
Query: 148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRN 207
            +  G+      F T       +  + L    G   A+         N  P+  E  + N
Sbjct: 121 WDKYGYSVCEPEFAT-------KLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPN 173
Query: 208 LQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLT-YCTGMGVLFPSP 266
                 GPV               M  +L G  Y +K    D   +T +  G  +   SP
Sbjct: 174 ADSACEGPVF-------------EMSLMLHG--YFKKKGMLDKVHVTVFSPGEYLSDLSP 218
Query: 267 FYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE 326
              + +  I    G+ +     + EI     E V   ++K   +P  I  + PP    P 
Sbjct: 219 NSRKAVASIYNQLGIKLVHNFKIKEI--REHEIV---DEKGNTIPADITILLPPYTGNPA 273
Query: 327 L--ATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK 367
           L  +T  LVD  G++  D   +  +KY NV+A+GD +++   K
Sbjct: 274 LKNSTPDLVDDGGFIPTD-LNMVSIKYDNVYAVGDANSMTVPK 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	706
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-119
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-32
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	3e-25
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-117
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-27
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	4e-22
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	1e-116
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	3e-25
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-19
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	1e-103
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	7e-28
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score =  362 bits (932), Expect = e-119
 Identities = 78/439 (17%), Positives = 151/439 (34%), Gaps = 54/439 (12%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           K++VVGGG  G + A          +V+++EP  D+Y   +   + GG +KL   +    
Sbjct: 4   KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63

Query: 92  SVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINAL 151
            +   G   V D     DP+   V+T  G+E  Y+  +VA GI++ YD+++G        
Sbjct: 64  GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEG-------- 115

Query: 152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF 211
                                          E             + +      + L+  
Sbjct: 116 -----------------------------YSEEAAAK--LPHAWKAGEQTAILRKQLEDM 144

Query: 212 QSGP-VLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAE 270
             G  V+   PA P +C   P +       YL+ HK     K+              +++
Sbjct: 145 ADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMS--KVIILDSSQTFSKQSQFSK 202

Query: 271 KIHDI----LIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE 326
               +         ++ H G     + +   E + ++    +     ++++ PP      
Sbjct: 203 GWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAF-GDEFKADVINLIPPQRAGKI 261

Query: 327 LATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSN-LPTSKTAAAVAGQCKVVYDNLSA 385
              + L + +G+  VD  T +   +  +  IGD S   P  K+  +   Q KV    +  
Sbjct: 262 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVV 321

Query: 386 VMKNRA-LPHEYNGYTSCPLVTGYSKCVMAEFDY--TLKPLETFPVDQ--SKERSLMFQM 440
           ++K        Y       L   Y   V A +        +E+ P     +   +  + +
Sbjct: 322 LLKGEEPGTPSYLNTCYSILAPAYGISVAAIYRPNADGSAIESVPDSGGVTPVDAPDWVL 381

Query: 441 KKQVMPFLYW-NLMLRGYW 458
           +++V     W N ++   +
Sbjct: 382 EREVQYAYSWYNNIVHDTF 400

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score =  129 bits (327), Expect = 1e-32
 Identities = 25/93 (26%), Positives = 45/93 (48%)

Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQA 618
           ++EP  D+Y   +   + GG +KL   +     +   G   V D     DP+   V+T  
Sbjct: 32  LIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAG 91

Query: 619 GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRG 651
           G+E  Y+  +VA GI++ YD+++G +     + 
Sbjct: 92  GAEFGYDRCVVAPGIELIYDKIEGYSEEAAAKL 124

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score =  107 bits (269), Expect = 3e-25
 Identities = 20/75 (26%), Positives = 31/75 (41%)

Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL 531
           VVGGG  G + A          +V+++EP  D+Y   +   + GG +KL   +     + 
Sbjct: 7   VVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLR 66

Query: 532 PSGATWVKDKIVSFD 546
             G   V D     D
Sbjct: 67  AHGIQVVHDSATGID 81

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score =  354 bits (909), Expect = e-116
 Identities = 77/456 (16%), Positives = 149/456 (32%), Gaps = 77/456 (16%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM 90
           K+LV+GG     + A      +G    V ++  +   Y++P    +  G++ + + +  +
Sbjct: 3   KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDL 62

Query: 91  KSVLPS-GATWVKDKIVSFDPENNRVRTQ----AGSEISYEYMIVASGIQMYYDRVKGPS 145
              LP  G  + +  +   D +++ V       + +E  Y+Y+IV  G  +  + VKG  
Sbjct: 63  SEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG-- 120

Query: 146 ALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTL 205
                                                +          +   P++  K  
Sbjct: 121 -----------------------------------WDK-------YGYSVCEPEFATKLR 138

Query: 206 RNLQHFQSGPVLYT------------------FPATPIKCGGAPMKAVLIGDEYLRKHKK 247
             L+ FQ G +                      P     C G   +  L+   Y +K   
Sbjct: 139 EKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGM 198

Query: 248 RDAAKLTYCTGMGVLFP-SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK 306
            D   +T  +    L   SP   + +  I    G+ +     + EI     E V +    
Sbjct: 199 LDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIR--EHEIVDEK--- 253

Query: 307 TERLPYAIMHVTPPMGPVPELATSR--LVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP 364
              +P  I  + PP    P L  S   LVD  G++  D   +  +KY NV+A+GD +++ 
Sbjct: 254 GNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDL-NMVSIKYDNVYAVGDANSMT 312

Query: 365 TSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLE 424
             K         ++   +L+  +       +Y     C     Y    ++  D T     
Sbjct: 313 VPKLGYLAVMTGRIAAQHLANRLGVPTKVDKYYPTIVCVADNPYEGYAVSVKDDTWYGGT 372

Query: 425 TFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNG 460
               D +    L  ++  +   +   ++ L  +   
Sbjct: 373 VSIADPAAVNHLKKELFTKYYMWTKGDMALEKFLAS 408

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score =  107 bits (270), Expect = 3e-25
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQ 617
           ++  +   Y++P    +  G++ + + +  +   LP  G  + +  +   D +++ V   
Sbjct: 32  VINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYT 91

Query: 618 ----AGSEISYEYMIVASGIQMYYDRVKG 642
               + +E  Y+Y+IV  G  +  + VKG
Sbjct: 92  KPDGSMAEEEYDYVIVGIGAHLATELVKG 120

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR 525
           M  + V+GG     + A      +G    V ++  +   Y++P    +  G++ + + + 
Sbjct: 1   MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKV 60

Query: 526 PMKSVLPS-GATWVKDKIVSFD 546
            +   LP  G  + +  +   D
Sbjct: 61  DLSEALPEKGIQFQEGTVEKID 82

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score =  321 bits (825), Expect = e-103
 Identities = 72/464 (15%), Positives = 141/464 (30%), Gaps = 73/464 (15%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM 90
            ++++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P+
Sbjct: 6   HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65

Query: 91  KSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALIN 149
           +  +   G  ++       D E   +    G+ + Y+Y+++A+G ++ ++ V G      
Sbjct: 66  RHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPG------ 119

Query: 150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQ 209
                                               D  +  V +  +  + E+     Q
Sbjct: 120 -----------------------------------SDPHEGPVQSICTVDHAERAFAEYQ 144

Query: 210 HFQSGP-VLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRD-AAKLTYCTGMGVL----- 262
                P  +         C G   +  +I    L+K   RD     T+ T    +     
Sbjct: 145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGI 204

Query: 263 FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED----KTERLPYAIMHVT 318
                    +   L   G++ +    + +++          E     K   LP     + 
Sbjct: 205 QGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMI 264

Query: 319 PPMGPVPELA-TSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT----------SK 367
           P    VP +A    L +  G+V VD+   +  KY+N+FA G    +P            K
Sbjct: 265 PAFKGVPAVAGVEGLCNPGGFVLVDE-HQRSKKYANIFAAGIAIAIPPVETTPVPTGAPK 323

Query: 368 TAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVT-GYSKCVMAEFDYTLKPLETF 426
           T   +         N+ A ++ R        + +      G                   
Sbjct: 324 TGYMIESMVSAAVHNIKADLEGRKGEQTMGTWNAVAFADMGDRGAAFIALPQLKPRKVDV 383

Query: 427 PVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL 470
                        + K      +   M  G  + P   + +F +
Sbjct: 384 FA-----YGRWVHLAKVAFEKYFIRKMKMG-VSEPFYEKVLFKM 421

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score =  115 bits (291), Expect = 7e-28
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQ 617
           ++   D   + P    +G G K+  D   P++  +   G  ++       D E   +   
Sbjct: 35  LISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLA 94

Query: 618 AGSEISYEYMIVASGIQMYYDRVKG 642
            G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 95  DGNTVHYDYLMIATGPKLAFENVPG 119

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 93.3 bits (232), Expect = 3e-20
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 472 VVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV 530
           ++G G  G   A +    LG G +V+++   D   + P    +G G K+  D   P++  
Sbjct: 9   ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68

Query: 531 L-PSGATWVKDKIVSFD 546
           +   G  ++       D
Sbjct: 69  VERKGIHFIAQSAEQID 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 90/610 (14%), Positives = 161/610 (26%), Gaps = 224/610 (36%)

Query: 81  KKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR------TQAGSEISYEYMIVASGI 134
           K + D     KS+L        D I+      +              E+  ++  V   +
Sbjct: 36  KDVQDM---PKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVL 87

Query: 135 QMYYD--------RVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRP---SGLQE 183
           ++ Y           + PS +          R +    +F        + R      L++
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKY----NVSRLQPYLKLRQ 142

Query: 184 AL--DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEY 241
           AL   +P   V            +        G             G    K  +   + 
Sbjct: 143 ALLELRPAKNV-----------LI----DGVLG------------SG----KTWVAL-DV 170

Query: 242 LRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEI--DLANK-E 298
              +K              V     F   KI  + +      +  + ++E+   L  + +
Sbjct: 171 CLSYK--------------VQCKMDF---KIFWLNLKN---CNSPETVLEMLQKLLYQID 210

Query: 299 AVFKSE-DKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAI 357
             + S  D +  +   I               + L          +  L+   Y N   +
Sbjct: 211 PNWTSRSDHSSNIKLRI-----------HSIQAEL----------RRLLKSKPYENCLLV 249

Query: 358 GDCSNLPTSKTAAAVAGQCKV--------VYDNLSA-VMKNRALPHEYNGYTSCPLVTGY 408
               N+  +K   A    CK+        V D LSA    + +L H     T   + +  
Sbjct: 250 LL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 409 SKCV-MAEFDYTLKP--LETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWN------ 459
            K +     D  L    L T P   S     +     +      W+      W       
Sbjct: 308 LKYLDCRPQD--LPREVLTTNPRRLS-----IIAESIRDGLAT-WD-----NWKHVNCDK 354

Query: 460 ------------GPGVFRQMFH-LGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT----- 501
                        P  +R+MF  L V             F          I         
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV-------------FPP-----SAHIPTILLSLIW 396

Query: 502 -DDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILI----- 555
            D      M  ++   + KL        S++       K+  +S  S Y   + +     
Sbjct: 397 FDVIKSDVM--VV---VNKLHK-----YSLV---EKQPKESTISIPSIY-LELKVKLENE 442

Query: 556 --LH-SIVE---------------PTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPS-- 595
             LH SIV+               P  D Y+   ++ IG  +K +    R   ++     
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNIEHPER--MTLFRMVF 497

Query: 596 -GATWVKDKI 604
               +++ KI
Sbjct: 498 LDFRFLEQKI 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	706
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.97
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.97
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.97
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.97
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.97
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.97
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.97
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.97
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.97
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.97
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.97
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.97
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.96
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.96
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.96
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.96
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.96
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.96
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.96
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.96
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.96
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.96
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.96
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.96
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.96
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.96
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.96
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.96
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.96
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.95
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.95
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.95
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.95
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.95
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.95
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.95
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.95
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.95
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.95
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.95
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.95
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.95
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.95
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.95
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.95
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.95
4dna_A	463	Probable glutathione reductase; structural genomic	99.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.95
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.95
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.95
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.95
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.94
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.94
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.94
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.94
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.94
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.94
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.94
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.93
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.93
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.93
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.92
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.92
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.89
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.89
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.89
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.88
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.88
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.88
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.88
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.87
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.85
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.84
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.84
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.83
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.79
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.79
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.78
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.78
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.78
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.75
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.7
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.69
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.65
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.65
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.63
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.62
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.59
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.59
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.58
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.58
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.57
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.56
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.56
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.54
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.53
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.53
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.52
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.52
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.51
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.5
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.49
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.49
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.49
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.49
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.49
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.49
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.49
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.49
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.48
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.48
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.48
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.47
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.46
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.46
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.45
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.45
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.43
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.43
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.42
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.42
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.41
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.41
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.4
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.4
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.4
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.4
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.39
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.39
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.39
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.38
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.38
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.36
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.36
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.36
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.35
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.35
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.35
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.34
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.34
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.34
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.34
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.34
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.33
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.32
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.32
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.32
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.32
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.32
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.31
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.29
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.29
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.29
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.29
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.29
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.28
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.27
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.27
4dna_A	463	Probable glutathione reductase; structural genomic	99.26
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.25
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.25
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.24
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.16
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.16
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.1
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.09
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.0
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.95
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.94
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.9
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.89
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.81
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.78
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.76
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.76
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.74
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.72
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.68
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.63
3dme_A	369	Conserved exported protein; structural genomics, P	98.62
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.61
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.59
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.59
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.58
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.57
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.55
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.53
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.51
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.5
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.49
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.48
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.48
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.47
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.46
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.45
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.44
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.44
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.43
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.42
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.42
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.41
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.4
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.39
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.38
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.38
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.37
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.32
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.31
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.3
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.3
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.3
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.3
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.3
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.29
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.27
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.27
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.23
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.23
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.23
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.21
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.2
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.19
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.19
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.14
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.12
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.11
3dme_A	369	Conserved exported protein; structural genomics, P	98.1
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.09
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.08
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.08
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.07
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.07
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.05
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.05
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.04
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.04
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.04
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.02
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.02
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.01
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.99
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.98
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.98
3atr_A	453	Conserved archaeal protein; saturating double bond	97.98
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.97
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.96
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.94
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.94
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.93
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.92
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.89
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.88
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.87
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.87
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.86
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.85
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.85
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.83
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.81
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.8
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.8
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.79
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.77
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.72
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.72
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.72
3atr_A	453	Conserved archaeal protein; saturating double bond	97.71
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.7
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.68
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.65
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.65
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.64
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.62
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.61
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.58
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.55
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.54
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.53
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.5
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.48
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.46
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.46
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.41
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.37
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.35
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.35
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.35
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.35
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.35
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.34
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.32
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.32
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.31
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.25
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.25
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.23
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.23
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.22
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.22
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.22
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.2
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.19
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.16
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.15
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.15
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.11
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.1
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.08
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.07
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.06
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.04
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.02
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	96.97
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	96.96
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.96
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	96.96
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.94
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.94
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	96.94
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	96.85
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.81
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.8
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	96.73
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.7
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.66
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.65
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.63
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.61
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.6
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.59
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.58
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.58
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.58
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.51
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.48
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.47
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.47
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.43
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.41
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.39
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	96.36
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.34
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	96.34
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.32
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	96.31
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.31
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.29
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.28
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.28
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.27
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.27
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.25
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.25
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.21
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.19
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.15
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	96.11
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.07
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	96.03
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	96.02
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	96.02
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	95.92
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.89
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	95.86
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.85
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.8
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	95.79
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.75
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	95.75
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	95.7
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	95.7
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	95.61
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.38
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.37
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	95.35
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.34
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	95.23
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	95.2
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.2
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.07
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	95.05
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	94.88
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	94.85
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	94.85
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	94.79
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.75
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	94.58
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	94.55
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.54
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.51
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.47
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	94.45
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.41
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.38
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	94.37
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	94.25
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	94.22
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	94.08
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	94.04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.98
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	93.84
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	93.81
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	93.68
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	93.56
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.51
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	93.51
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.36
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	93.09
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	92.79
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.73
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	92.6
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.32
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.16
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	92.16
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	91.61
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.37
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	91.35
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.03
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.02
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.96
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	90.68
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	90.65
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	90.61
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.58
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	90.34
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.19
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	90.14
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	90.12
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.8
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	89.76
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.53
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	89.53
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	89.46
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	89.45
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.43
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	89.37
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.29
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	89.19
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	89.09
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	88.84
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.8
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	88.61
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.59
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.57
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.48
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	88.48
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	88.39
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	88.39
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	88.35
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	88.17
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	88.02
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	87.95
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	87.81
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.73
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	87.68
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	87.51
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	87.5
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	87.35
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	87.18
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	87.13
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	87.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.01
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	86.99
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	86.92
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.81
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	86.74
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	86.71
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	86.68
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	86.65
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	86.41
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	86.41
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	86.31
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	86.28
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.26
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	86.2
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	86.13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	86.13
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	85.97
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	85.84
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	85.81

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=6.9e-49  Score=428.57  Aligned_cols=371  Identities=19%  Similarity=0.284  Sum_probs=308.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEEceeEEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSF  108 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~v~~i  108 (706)
                      .++|||||||+||++||.+|++..++++|||||++++|+|+|+++++..+..+.+++..++.++++ .+++|++++|++|
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~I   81 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI   81 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence            358999999999999999999987779999999999999999999998899999999999988876 5899999999999


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCC
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQP  188 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  188 (706)
                      |+++++|++++|++++||+||||||++.. +++||.+  ||+                                      
T Consensus        82 d~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~G~~--e~~--------------------------------------  120 (430)
T 3hyw_A           82 DPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAEGQE--ENS--------------------------------------  120 (430)
T ss_dssp             ETTTTEEEETTCCEEECSEEEECCCCEEE-CCSBTHH--HHS--------------------------------------
T ss_pred             ECCCCEEEECCCCEEECCEEEEeCCCCcc-CCccCcc--cCc--------------------------------------
Confidence            99999999999999999999999999865 5688821  222                                      


Q ss_pred             CCCcccCCChhHHHHHHHHHHhcc-CCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC---
Q psy8791         189 DSGVSTNYSPQYVEKTLRNLQHFQ-SGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP---  264 (706)
Q Consensus       189 ~~~v~~~~~~~~~~~~~~~l~~~~-~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~---  264 (706)
                          ..+++.+++.++++.+.++. +...++..+..+++|+|.+.+.+.....++++.+.+.++++++++..+.+..   
T Consensus       121 ----~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~  196 (430)
T 3hyw_A          121 ----TSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGV  196 (430)
T ss_dssp             ----CCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTT
T ss_pred             ----CCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccc
Confidence                23345667777777777653 3334454555689999999999999999999999888889999998876532   


Q ss_pred             --chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCC-CceEEeecEEEECCCCCchhhhhcCCC---CCCCCc
Q psy8791         265 --SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED-KTERLPYAIMHVTPPMGPVPELATSRL---VDQSGY  338 (706)
Q Consensus       265 --~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~-~g~~i~~D~vI~a~G~~~~~~~~~~~l---~~~~G~  338 (706)
                        .+...+.+++.++++||++++++.|++++.++  +++...+ +++++++|++||++|++|++++..+++   .+.+|+
T Consensus       197 ~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~--~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~  274 (430)
T 3hyw_A          197 GGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK--VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKM  274 (430)
T ss_dssp             TCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE--EEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCC
T ss_pred             hhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc--eEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceE
Confidence              46778889999999999999999999998754  6655433 456899999999999999998888753   355678


Q ss_pred             eeeCccccccCCCCCEEEccccCCCC----------CCchHHHHHHhHHHHHHHHHHHHcCCCCCCcccceeeEEEEecC
Q psy8791         339 VNVDKATLQHVKYSNVFAIGDCSNLP----------TSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGY  408 (706)
Q Consensus       339 i~vd~~~l~~~~~~~Ifa~GD~~~~~----------~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~~~~~G~  408 (706)
                      +.||+ +||++++|||||+|||+..|          .|++++.|.+||+++|+||.+.++|++.++.+.....|++++|.
T Consensus       275 i~vd~-~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~~~~~~~~~~~~~~~~G~  353 (430)
T 3hyw_A          275 VIVNR-CFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPDKYAPRLSAICIADFGE  353 (430)
T ss_dssp             BCCCT-TSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEEEECSS
T ss_pred             EEecc-cccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCcEEEEEEcCC
Confidence            99998 89999999999999999875          36899999999999999999999999987777778899999999


Q ss_pred             CeEEEEEEeCCCCcccCCCCCCCCchhHHHHHHHhhchHHHHHH
Q psy8791         409 SKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNL  452 (706)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~y~~~  452 (706)
                      +.+++..+...    +.........+++.||+|..+++|++|+.
T Consensus       354 ~~~~~~~~~~~----~~~~~~~~~~g~~~~~~K~~~~~~~~w~~  393 (430)
T 3hyw_A          354 DAGFFFADPVI----PPRERVITKMGKWAHYFKTAFEKYFLWKV  393 (430)
T ss_dssp             SEEEEEEESSS----SSCSEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcccC----CccccccccccHHHHHHHHHHHHHHHHHH
Confidence            99886554321    12222334567899999998888888874

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=2e-48  Score=422.30  Aligned_cols=387  Identities=22%  Similarity=0.328  Sum_probs=317.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  109 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~id  109 (706)
                      .+||||||||+||++||.+|++..++.+|||||++++|+++|+++.+..+..+.+++..+++.+.+.+++|++++|+.||
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            37899999999999999999998667899999999999999999998888888888888888888899999999999999


Q ss_pred             cCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCC
Q psy8791         110 PENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPD  189 (706)
Q Consensus       110 ~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  189 (706)
                      ++++++.+.+|.++.||+||+|||++++++.+||.+                                     +..... 
T Consensus        82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~-------------------------------------e~~~~~-  123 (401)
T 3vrd_B           82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYS-------------------------------------EALAAK-  123 (401)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCC-------------------------------------SGGGGT-
T ss_pred             ccCcEEEecccceeecceeeeccCCccccCCccCch-------------------------------------hhcccC-
Confidence            999999999999999999999999999999999932                                     111111 


Q ss_pred             CCcccCCChhHHHHHHHHHHhccCC-CEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCCc---
Q psy8791         190 SGVSTNYSPQYVEKTLRNLQHFQSG-PVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPS---  265 (706)
Q Consensus       190 ~~v~~~~~~~~~~~~~~~l~~~~~g-~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~---  265 (706)
                       .+......+.+..+++.+..+..+ ..+++.+..++.|++++.+.++...+++++.+.+  .+|++++..+.++..   
T Consensus       124 -~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~--~~v~i~~~~~~~~~~~~~  200 (401)
T 3vrd_B          124 -LPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSK--SKVIILDNSQTFSKQAQF  200 (401)
T ss_dssp             -SCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTT--CEEEEECSSSSCTTHHHH
T ss_pred             -ccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCC--CEEEEEcccccccccccc
Confidence             234455667788888888888654 4567788899999999999999999999988754  468999988887653   


Q ss_pred             -hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCCCCCCCceeeCcc
Q psy8791         266 -PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKA  344 (706)
Q Consensus       266 -~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l~~~~G~i~vd~~  344 (706)
                       +.+.+.+.+.+++.||++++++++..++.+.+...+ .+++|+++++|++++++|.+|++++.++++.+++|+|.||++
T Consensus       201 ~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v-~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~  279 (401)
T 3vrd_B          201 TKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTV-ETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIR  279 (401)
T ss_dssp             HHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEE-EETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTT
T ss_pred             cHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEE-EcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECCC
Confidence             344444555678899999999998888754432232 245889999999999999999999999999999999999997


Q ss_pred             ccccCCCCCEEEccccCCC-CCCchHHHHHHhHHHHHHHHHHHHcCCCC-CCcccceeeEEEEecCCeEEEEEEeCCCC-
Q psy8791         345 TLQHVKYSNVFAIGDCSNL-PTSKTAAAVAGQCKVVYDNLSAVMKNRAL-PHEYNGYTSCPLVTGYSKCVMAEFDYTLK-  421 (706)
Q Consensus       345 ~l~~~~~~~Ifa~GD~~~~-~~~~~~~~a~~qg~~~a~ni~~~l~g~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~-  421 (706)
                      +||++++|||||+|||+.. |.|++++.|..||+++|+||.+.++|+++ ++.|.++..|++..|.+..++..|+|... 
T Consensus       280 tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g  359 (401)
T 3vrd_B          280 TFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCYSILAPGYGISIAAVYRPNAEG  359 (401)
T ss_dssp             TCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEEEEEETTEEEEEEEEEEECTTS
T ss_pred             cceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCeEEEEEecCCceEEEEEecccCCC
Confidence            7999999999999999864 67899999999999999999999999876 78899999999999999888888877643 


Q ss_pred             -cccCCCCC--CCCchhHHHHHHHhhchHHHHH-Hhhccee
Q psy8791         422 -PLETFPVD--QSKERSLMFQMKKQVMPFLYWN-LMLRGYW  458 (706)
Q Consensus       422 -~~~~~~~~--~~~~~~~~~~l~~~~~~~~y~~-~~~~~~~  458 (706)
                       ....++..  ....+...|.+++......+|. .|.+++|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~d~f  400 (401)
T 3vrd_B          360 KAIEAVPDSGGITPVDAPDWVLEREVQYAHSWYNNIVHDTF  400 (401)
T ss_dssp             SSEEECTTCCEESCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecccCCcccccchhHHHhccchhHHHHHHHHHHhhc
Confidence             33333321  2334566777777666666774 4555443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=4.3e-43  Score=388.13  Aligned_cols=344  Identities=18%  Similarity=0.268  Sum_probs=253.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccccc---CCCcEEEEce
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL---PSGATWVKDK  104 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~i~~~  104 (706)
                      .++++|||||||+||+++|.+|++.  +++|||||++++|+|+|+++.+..|..++.++..|+..+.   ..+++|++++
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~--~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~  117 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTK--KYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAE  117 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTT--TCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhC--CCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEE
Confidence            4567999999999999999999987  8999999999999999999999888888888888877654   2589999999


Q ss_pred             eEEEEcCCCEEEeC--------------------CCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccC
Q psy8791         105 IVSFDPENNRVRTQ--------------------AGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFP  164 (706)
Q Consensus       105 v~~id~~~~~v~~~--------------------~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  164 (706)
                      |++||+++++|++.                    ++.++.||+||||||+.++++++||++  ||++.            
T Consensus       118 v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~--e~a~~------------  183 (502)
T 4g6h_A          118 ATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVT--DYGHF------------  183 (502)
T ss_dssp             EEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHH--HHCEE------------
T ss_pred             EEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcc--cccCC------------
Confidence            99999999988763                    356899999999999999999999943  55532            


Q ss_pred             ccCCccccc-cccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhH--HHHHHHHHH
Q psy8791         165 LFFPRRTLD-FLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPM--KAVLIGDEY  241 (706)
Q Consensus       165 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~--~~~~~~~~~  241 (706)
                          +++++ +.+.++++...+...  ...  ...+   ...+.+.             ..+.++|++.  |.+....++
T Consensus       184 ----l~t~~dA~~ir~~l~~~~e~a--~~~--~~~~---~~~~~~~-------------~vvVvGgG~tGvE~A~~l~~~  239 (502)
T 4g6h_A          184 ----LKEIPNSLEIRRTFAANLEKA--NLL--PKGD---PERRRLL-------------SIVVVGGGPTGVEAAGELQDY  239 (502)
T ss_dssp             ----CSSHHHHHHHHHHHHHHHHHH--HHS--CTTC---HHHHHHT-------------EEEEECCSHHHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHH--hcc--cccc---hhhcccc-------------ceEEECCCcchhhhHHHHHHH
Confidence                22222 111111111111000  000  0000   0000010             1122344433  333222222


Q ss_pred             HH----HcC--CCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE-eCCCc----e
Q psy8791         242 LR----KHK--KRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK-SEDKT----E  308 (706)
Q Consensus       242 l~----~~g--~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~-~~~~g----~  308 (706)
                      .+    +..  ...+++|+++++.+++++  ++.+.+.+++.|+++||+++++++|++++.++  +... ...+|    +
T Consensus       240 ~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~--~~~~~~~~dg~~~~~  317 (502)
T 4g6h_A          240 VHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ--LLAKTKHEDGKITEE  317 (502)
T ss_dssp             HHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSE--EEEEEECTTSCEEEE
T ss_pred             HHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCc--eEEEEEecCccccee
Confidence            21    110  123457999999999987  78999999999999999999999999998765  3332 23344    4


Q ss_pred             EEeecEEEECCCCCchhhhhc----CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         309 RLPYAIMHVTPPMGPVPELAT----SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       309 ~i~~D~vI~a~G~~~~~~~~~----~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      ++++|+||||+|++|++.+.+    .++ .+.+|+|.||+ +||++++|||||+|||+..+.|++++.|.+||+++|+||
T Consensus       318 ~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~-~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni  396 (502)
T 4g6h_A          318 TIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVND-FLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNF  396 (502)
T ss_dssp             EEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCT-TSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHH
T ss_pred             eeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECC-ccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHH
Confidence            799999999999999965443    344 67789999999 899889999999999999999999999999999999999


Q ss_pred             HHH--------------------HcCCCC-CCcccceeeEEEEecCCeEEEEE
Q psy8791         384 SAV--------------------MKNRAL-PHEYNGYTSCPLVTGYSKCVMAE  415 (706)
Q Consensus       384 ~~~--------------------l~g~~~-~~~~~~~~~~~~~~G~~~~~~~~  415 (706)
                      .+.                    +.++++ ||.|...++++ ++|.+.|++.-
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pF~y~~~G~~a-~lG~~~av~~~  448 (502)
T 4g6h_A          397 DKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALA-YLGSERAIATI  448 (502)
T ss_dssp             HHHTTCHHHHHHTTSSSCCHHHHHHHTTCCCCCCCCCEEEE-ECSTTCEEEEE
T ss_pred             HHHhccchhhhhhhhccchhhhhhcCCCCCCCEecCcceEE-EEeCCceEEEc
Confidence            764                    345555 88999888866 99999998543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=7.6e-42  Score=374.12  Aligned_cols=390  Identities=19%  Similarity=0.288  Sum_probs=303.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh-cCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEEceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSK-LGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~-~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~v~~  107 (706)
                      +++|||||||+||++||..|++. ..+++|||||+++++.|.|+++.+..+....+++..++.+++. .+++++.++|+.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~   83 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQ   83 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence            57999999999999999999992 1389999999999999999988887777777777777777664 799999999999


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcC
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQ  187 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (706)
                      ||++.+.|.+++++++.||+||+|||+.++.+.+||.+                                     .... 
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~-------------------------------------~~~~-  125 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSD-------------------------------------PHEG-  125 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCS-------------------------------------TTTS-
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCC-------------------------------------cccC-
Confidence            99999999999998899999999999999988999932                                     1000 


Q ss_pred             CCCCcccCCChhHHHHHHHHHHhc--cCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcE-EEEEeCCCcC--
Q psy8791         188 PDSGVSTNYSPQYVEKTLRNLQHF--QSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAK-LTYCTGMGVL--  262 (706)
Q Consensus       188 ~~~~v~~~~~~~~~~~~~~~l~~~--~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~-v~l~~~~~~~--  262 (706)
                         ....+++.+++..+++.+..+  ..+.+|++.+.. ..|.|++.|.++.+...+++.|.+.+++ |+++++.+.+  
T Consensus       126 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~-~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~  201 (437)
T 3sx6_A          126 ---PVQSICTVDHAERAFAEYQALLREPGPIVIGAMAG-ASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGH  201 (437)
T ss_dssp             ---SEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTT-CCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTC
T ss_pred             ---cceecccccHHHHHHHHHHHHHhCCCEEEEEcCCC-CCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccc
Confidence               222345566666776666654  345566766543 3577778899988889999998877777 9999998876  


Q ss_pred             --CC-chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe-CCC-----ceEEeecEEEECCCCCchhhhhc-CCC
Q psy8791         263 --FP-SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS-EDK-----TERLPYAIMHVTPPMGPVPELAT-SRL  332 (706)
Q Consensus       263 --~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~-~~~-----g~~i~~D~vI~a~G~~~~~~~~~-~~l  332 (706)
                        ++ .+...+.+++.|+++||+++++++|++|+.++  +++.. .++     ++++++|++++++|++++..+.+ +++
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~--v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl  279 (437)
T 3sx6_A          202 LGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNK--MYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL  279 (437)
T ss_dssp             TTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETTE--EEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT
T ss_pred             cccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECCe--EEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc
Confidence              22 35688899999999999999999999998754  55543 122     67899999999999999877765 588


Q ss_pred             CCCCCceeeCccccccCCCCCEEEccccCCCC----------CCchHHHHHHhHHHHHHHHHHHHcCCCCCC-cccceee
Q psy8791         333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP----------TSKTAAAVAGQCKVVYDNLSAVMKNRALPH-EYNGYTS  401 (706)
Q Consensus       333 ~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~----------~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~-~~~~~~~  401 (706)
                      .+++|+|.||+ ++|.+++|||||+|||+..+          .|++++.|..||+++|+||.+.+.|+++.. .+.....
T Consensus       280 ~~~~G~i~Vd~-~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~~~~~~~~~~  358 (437)
T 3sx6_A          280 CNPGGFVLVDE-HQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQTMGTWNAV  358 (437)
T ss_dssp             BCTTSCBCBCT-TSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCCCCCCSCCEE
T ss_pred             cCCCCcEEeCh-hccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCcceE
Confidence            88999999999 79977999999999999875          378999999999999999999999998744 6666789


Q ss_pred             EEEEecCCeEEEEEEeCCCCcccCCCCCCCCchhHHHHHHHhhchHHHHHHhhcceecCCCcccccccc
Q psy8791         402 CPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL  470 (706)
Q Consensus       402 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i  470 (706)
                      |++++|++.+++..+.    ..+.........+++.||+|..+. +.|++.+..+..- |.+.+-+.+.
T Consensus       359 ~~~~~G~~~~~~~~~~----~~p~~~~~~~~~g~~~~~~K~~~~-~~f~~~~~~g~~~-p~~~~~~~~~  421 (437)
T 3sx6_A          359 AFADMGDRGAAFIALP----QLKPRKVDVFAYGRWVHLAKVAFE-KYFIRKMKMGVSE-PFYEKVLFKM  421 (437)
T ss_dssp             EEEECSSCEEEEEEES----SSSSCSEEEEEEEHHHHHHHHHHH-HHHHHHHHHCCCS-CCCCHHHHCC
T ss_pred             EEEEeCCCceEEEeCC----CCCCcccccccccHHHHHHHHHHH-HHHHHHhccCCcc-ccHHHHHHHH
Confidence            9999999977654432    111111223457788999996554 5555545555544 4444444444

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=3.5e-41  Score=366.10  Aligned_cols=365  Identities=20%  Similarity=0.324  Sum_probs=276.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHh-hcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEEceeEEE
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTS-KLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSF  108 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~-~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~v~~i  108 (706)
                      ++|||||||+||+++|.+|++ ...+++|+|||+++++.+.|.++....+....+++..++.+.+. .+++++.++|+.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            689999999999999999999 22389999999999999999888877777777777777776665 6899999999999


Q ss_pred             EcCCCEEEeCCCe----EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         109 DPENNRVRTQAGS----EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       109 d~~~~~v~~~~g~----~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      +++.+.|.+.++.    ++.||+||+|||+.+..+.+||                                     +.+ 
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG-------------------------------------~~~-  123 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG-------------------------------------WDK-  123 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBT-------------------------------------HHH-
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCC-------------------------------------hhh-
Confidence            9999999988775    3999999999999998888999                                     322 


Q ss_pred             hcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecC------------------CCCeeeCChhHHHHHHHHHHHHHcC
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFP------------------ATPIKCGGAPMKAVLIGDEYLRKHK  246 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~------------------~~~v~~~g~~~~~~~~~~~~l~~~g  246 (706)
                            ...+.++.+.+..+++.+..+.++.+|++.+                  +.++.|.|.+.|.+....+++++.|
T Consensus       124 ------~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g  197 (409)
T 3h8l_A          124 ------YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKG  197 (409)
T ss_dssp             ------HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTT
T ss_pred             ------cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcC
Confidence                  1122345566677788888876666777766                  3678899888899988888999999


Q ss_pred             CCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         247 KRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       247 ~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      .+++.+++++++.+ +++  ++.+.+.+.+.++++||+++++++|++++.++  +++   ++|+++++|++|+++|++|+
T Consensus       198 ~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~--v~~---~~g~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          198 MLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHE--IVD---EKGNTIPADITILLPPYTGN  271 (409)
T ss_dssp             CTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSE--EEE---TTSCEEECSEEEEECCEECC
T ss_pred             CCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCe--EEE---CCCCEEeeeEEEECCCCCcc
Confidence            88888999999988 554  57889999999999999999999999998754  554   37889999999999999999


Q ss_pred             hhhhcC--CCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCCCCcccceeeE
Q psy8791         325 PELATS--RLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSC  402 (706)
Q Consensus       325 ~~~~~~--~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~  402 (706)
                      +++.++  ++.+++|++.||+ ++|.+++|||||+|||+..+.|+++..|..||+++|+||.+.+.+......|.+...|
T Consensus       272 ~~l~~~~~~l~~~~G~i~vd~-~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l~~~~~~~~~~~~~~c  350 (409)
T 3h8l_A          272 PALKNSTPDLVDDGGFIPTDL-NMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGVPTKVDKYYPTIVC  350 (409)
T ss_dssp             HHHHTSCGGGSCTTSCBCBBT-TSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCSC
T ss_pred             HHHHhccccCcCCCCCEEeCc-ccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCccccCCEEEE
Confidence            999888  6678899999999 8997799999999999998888999999999999999999999444434578888889


Q ss_pred             EEEecCC-eEEE--EEEeCCCCcccCCCCCCCCchhHHHHHHHhhchHHHHHH
Q psy8791         403 PLVTGYS-KCVM--AEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPFLYWNL  452 (706)
Q Consensus       403 ~~~~G~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~y~~~  452 (706)
                      ++..+.. .++.  ..+.|.+.....+      ++...|++|..+.+.+||..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~g~~~~~~------p~~~~~~~k~~~~~~~~w~k  397 (409)
T 3h8l_A          351 VADNPYEGYAVSVKDDTWYGGTVSIAD------PAAVNHLKKELFTKYYMWTK  397 (409)
T ss_dssp             GGGSTTC----------------------------------------------
T ss_pred             EEecCCCceEEEEecccccCCcccccC------CchHHHHHHHHHHHHHHhhc
Confidence            8776433 2332  2345554332232      45566777777777788873

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=1.6e-32  Score=299.33  Aligned_cols=287  Identities=16%  Similarity=0.170  Sum_probs=212.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccccccCccccCcc--ccccccccc-CCCcEEEE-cee
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSD--SRRPMKSVL-PSGATWVK-DKI  105 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~~~~~~~~~~~--~~~~~~~~~-~~~v~~i~-~~v  105 (706)
                      +||||||||+||++||.+|++..++.+|+|||+++++.|. |.++...++......  +......+. +.++++.. .+|
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   80 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEV   80 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeE
Confidence            5899999999999999999998656889999999987775 556654444333222  212222232 35888866 589


Q ss_pred             EEEEcCCCEEEeCC-----CeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccc
Q psy8791         106 VSFDPENNRVRTQA-----GSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSG  180 (706)
Q Consensus       106 ~~id~~~~~v~~~~-----g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (706)
                      +.||++.+.+.+.+     +.++.||+||||||++++.|++||.    +                .|.+           
T Consensus        81 ~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~----~----------------~~~~-----------  129 (437)
T 4eqs_A           81 IAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESD----I----------------TFTL-----------  129 (437)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCT----T----------------EECC-----------
T ss_pred             EEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCc----e----------------EEee-----------
Confidence            99999999877643     2468999999999999988888871    1                1111           


Q ss_pred             hhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCC
Q psy8791         181 LQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG  260 (706)
Q Consensus       181 l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~  260 (706)
                                     .+.+.+..+.+.+......+++        .++|+..  ++.....+.+.|.    +|+++++.+
T Consensus       130 ---------------~~~~~~~~l~~~~~~~~~~~vv--------ViGgG~i--g~E~A~~l~~~g~----~Vtlv~~~~  180 (437)
T 4eqs_A          130 ---------------RNLEDTDAIDQFIKANQVDKVL--------VVGAGYV--SLEVLENLYERGL----HPTLIHRSD  180 (437)
T ss_dssp             ---------------SSHHHHHHHHHHHHHHTCCEEE--------EECCSHH--HHHHHHHHHHHTC----EEEEEESSS
T ss_pred             ---------------ccHHHHHHHHHhhhccCCcEEE--------EECCccc--hhhhHHHHHhcCC----cceeeeeec
Confidence                           2233333333333333222222        2344432  2233345666664    499999999


Q ss_pred             cCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCC
Q psy8791         261 VLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQS  336 (706)
Q Consensus       261 ~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~  336 (706)
                      ++++  ++++.+.+++.++++||+++++++|++++.+.  +++   ++|+++++|.|++|+|.+|| .++..+++ .+++
T Consensus       181 ~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~--v~~---~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~  255 (437)
T 4eqs_A          181 KINKLMDADMNQPILDELDKREIPYRLNEEINAINGNE--ITF---KSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRK  255 (437)
T ss_dssp             CCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTE--EEE---TTSCEEECSEEEECCCEEESCGGGTTSSCCCCTT
T ss_pred             cccccccchhHHHHHHHhhccceEEEeccEEEEecCCe--eee---cCCeEEeeeeEEEEeceecCcHHHHhhhhhhccC
Confidence            9887  78899999999999999999999999998653  554   47899999999999999999 56666788 7889


Q ss_pred             CceeeCccccccCCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         337 GYVNVDKATLQHVKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       337 G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+|.||+ ++| |+.|||||+|||+..+.        +++++.|.+||+++|+||.
T Consensus       256 G~I~vd~-~~~-Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~  309 (437)
T 4eqs_A          256 GFIPVND-KFE-TNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIA  309 (437)
T ss_dssp             SCEECCT-TCB-CSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHH
T ss_pred             CcEecCC-Ccc-CCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHc
Confidence            9999999 788 89999999999987643        3578899999999999994

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.6e-32  Score=293.78  Aligned_cols=277  Identities=17%  Similarity=0.201  Sum_probs=214.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc-CcccccccCccccCccccccccccc-CCCcEEEEc-e
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY-QPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD-K  104 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~-~  104 (706)
                      ..+++|||||||+||++||..|++.  +.+|+|||+++++.| .|.++....+....+++.....+++ +.+++++.+ +
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~--~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~   84 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGK--CDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEF   84 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTT--CSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCC--CCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCE
Confidence            3567999999999999999999554  899999999998766 5777766656666566555544444 379999875 8


Q ss_pred             eEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         105 IVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       105 v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      |++||+++++|++++|+++.||+||+|||+.+..|++||.+                                       
T Consensus        85 V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~---------------------------------------  125 (385)
T 3klj_A           85 ATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHAD---------------------------------------  125 (385)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCS---------------------------------------
T ss_pred             EEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCC---------------------------------------
Confidence            99999999999999999999999999999999999999921                                       


Q ss_pred             hcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP  264 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~  264 (706)
                            .+.+..+.+.+..+.+.+..  +.+++        .++|+..  +......+.+.|.    +|+++++.+.+++
T Consensus       126 ------~v~~~~~~~d~~~l~~~l~~--~~~vv--------VIGgG~~--g~E~A~~l~~~g~----~Vtvv~~~~~~l~  183 (385)
T 3klj_A          126 ------EIFSLYSYDDALKIKDECKN--KGKAF--------IIGGGIL--GIELAQAIIDSGT----PASIGIILEYPLE  183 (385)
T ss_dssp             ------CEECCSSHHHHHHHHHHHHH--HSCEE--------EECCSHH--HHHHHHHHHHHTC----CEEEECSSSSSCT
T ss_pred             ------CeEEeCCHHHHHHHHHHhhc--CCeEE--------EECCCHH--HHHHHHHHHhCCC----eEEEEEcCCccch
Confidence                  12223344455555444432  12222        2344432  2233344666664    3999999998875


Q ss_pred             ---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCcee
Q psy8791         265 ---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVN  340 (706)
Q Consensus       265 ---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~  340 (706)
                         ++.+.+.+++.+++.||++++++.+.++              |+++++|+||+|+|++|+ +++..+++..++| +.
T Consensus       184 ~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i--------------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~g-i~  248 (385)
T 3klj_A          184 RQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM--------------GDLIRSSCVITAVGVKPNLDFIKDTEIASKRG-IL  248 (385)
T ss_dssp             TTSCHHHHHHHHHHHHTTTCEEECSCCGGGC--------------HHHHHHSEEEECCCEEECCGGGTTSCCCBSSS-EE
T ss_pred             hhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc--------------CeEEecCeEEECcCcccChhhhhhcCCCcCCC-EE
Confidence               6788999999999999999999888665              567999999999999999 5677778855566 99


Q ss_pred             eCccccccCCCCCEEEccccCCCCC--CchHHHHHHhHHHHHHHHH
Q psy8791         341 VDKATLQHVKYSNVFAIGDCSNLPT--SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       341 vd~~~l~~~~~~~Ifa~GD~~~~~~--~~~~~~a~~qg~~~a~ni~  384 (706)
                      ||+ +++ |+.|+|||+|||+..+.  ++++..|..||+.+|+||.
T Consensus       249 vd~-~~~-t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~  292 (385)
T 3klj_A          249 VND-HME-TSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNAC  292 (385)
T ss_dssp             ECT-TCB-CSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHT
T ss_pred             ECC-Ccc-cCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhc
Confidence            998 788 89999999999998653  5688999999999999995

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.1e-31  Score=289.45  Aligned_cols=295  Identities=19%  Similarity=0.239  Sum_probs=219.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccc-cccCccccCcccccccccc-cCCCcEEEEc-e
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFT-LIGGGMKKLSDSRRPMKSV-LPSGATWVKD-K  104 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~-~  104 (706)
                      .+++|||||||+||++||.+|+++....+|+|||+++++.|. |.+. .+..+....+.+.....++ ...+++++.+ +
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence            457999999999999999999998333349999999987665 3333 3333444444444333333 3478999986 9


Q ss_pred             eEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         105 IVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       105 v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      |+.+|++.+.|.+.+|.++.||+||+|||+.+..+++||.+                                   ..  
T Consensus        88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~-----------------------------------~~--  130 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGAD-----------------------------------LA--  130 (415)
T ss_dssp             EEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSC-----------------------------------CB--
T ss_pred             EEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCcc-----------------------------------cc--
Confidence            99999999999999999999999999999999988888831                                   00  


Q ss_pred             hcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP  264 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~  264 (706)
                            .+....+.+.+..+...+..  .++.++       .++|+..  +......+.+.|.    +|+++++.+.+++
T Consensus       131 ------~v~~~~~~~d~~~l~~~~~~--~~~~vv-------ViGgG~~--g~e~A~~l~~~g~----~Vtvv~~~~~~l~  189 (415)
T 3lxd_A          131 ------GVHAVRTKEDADRLMAELDA--GAKNAV-------VIGGGYI--GLEAAAVLTKFGV----NVTLLEALPRVLA  189 (415)
T ss_dssp             ------TEECCCSHHHHHHHHHHHHT--TCCEEE-------EECCSHH--HHHHHHHHHHTTC----EEEEEESSSSTTT
T ss_pred             ------CEEEEcCHHHHHHHHHHhhh--cCCeEE-------EECCCHH--HHHHHHHHHhcCC----eEEEEecCCchhh
Confidence                  12222334444444443332  022222       2333322  2233345666663    5999999998875


Q ss_pred             ---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCcee
Q psy8791         265 ---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVN  340 (706)
Q Consensus       265 ---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~  340 (706)
                         ++.+.+.+.+.++++||++++++.|++++.+++.+..+.+++|+++++|.||+|+|.+|+ +++..+++..++| |.
T Consensus       190 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~g-i~  268 (415)
T 3lxd_A          190 RVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNG-VD  268 (415)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCSSS-EE
T ss_pred             hhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcCCC-EE
Confidence               688999999999999999999999999987665565555668899999999999999999 4677788854566 99


Q ss_pred             eCccccccCCCCCEEEccccCCCCCCc---------hHHHHHHhHHHHHHHHH
Q psy8791         341 VDKATLQHVKYSNVFAIGDCSNLPTSK---------TAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       341 vd~~~l~~~~~~~Ifa~GD~~~~~~~~---------~~~~a~~qg~~~a~ni~  384 (706)
                      ||+ +++ |+.|+|||+|||+..+.+.         ++..|..||+.+|+||.
T Consensus       269 vd~-~~~-t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  319 (415)
T 3lxd_A          269 VDE-FCR-TSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDIC  319 (415)
T ss_dssp             CCT-TCB-CSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHT
T ss_pred             ECC-CCC-cCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhc
Confidence            999 687 7999999999999886643         47899999999999995

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.7e-31  Score=289.01  Aligned_cols=293  Identities=19%  Similarity=0.232  Sum_probs=218.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccc-cccCccccCcccccccccc-cCCCcEEEEceeE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFT-LIGGGMKKLSDSRRPMKSV-LPSGATWVKDKIV  106 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~v~  106 (706)
                      +++|||||||+||++||..|+++....+|+|||++++..|. |.+. .+..+....+.+.....+. ...+++++.++|+
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~   80 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMV   80 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEE
Confidence            36899999999999999999998323389999999977665 3333 3333344444444433333 3478999889999


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                      .+|++.+.|.+.+|.++.||+||+|||+.+..+++||.+                 .+                      
T Consensus        81 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~-----------------~~----------------------  121 (404)
T 3fg2_P           81 SIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNAS-----------------LP----------------------  121 (404)
T ss_dssp             EEETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTT-----------------ST----------------------
T ss_pred             EEECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCC-----------------CC----------------------
Confidence            999999999999999999999999999999888888821                 00                      


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--  264 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--  264 (706)
                          .+....+.+.+..+.+.+.   .++.++       .++|+..  +......+.+.|.    +|+++++.+.+++  
T Consensus       122 ----~v~~~~~~~d~~~l~~~~~---~~~~vv-------ViGgG~~--g~e~A~~l~~~g~----~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          122 ----DVLYLRTLDESEVLRQRMP---DKKHVV-------VIGAGFI--GLEFAATARAKGL----EVDVVELAPRVMARV  181 (404)
T ss_dssp             ----TEECCSSHHHHHHHHHHGG---GCSEEE-------EECCSHH--HHHHHHHHHHTTC----EEEEECSSSSTTTTT
T ss_pred             ----cEEEECCHHHHHHHHHHhh---cCCeEE-------EECCCHH--HHHHHHHHHhCCC----EEEEEeCCCcchhhc
Confidence                2222223344444433322   122222       2333322  2223334555653    5999999988875  


Q ss_pred             -chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCCCCCCCceeeC
Q psy8791         265 -SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRLVDQSGYVNVD  342 (706)
Q Consensus       265 -~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l~~~~G~i~vd  342 (706)
                       ++.+.+.+.+.+++.||++++++.|++++.+++.+..+.+++|+++++|.||+|+|++|+. ++..+++..++| |.||
T Consensus       182 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd  260 (404)
T 3fg2_P          182 VTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVD  260 (404)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEEC
T ss_pred             cCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEEC
Confidence             6889999999999999999999999999876656655556689999999999999999994 677788844466 9999


Q ss_pred             ccccccCCCCCEEEccccCCCCCCc--------hHHHHHHhHHHHHHHHH
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTSK--------TAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~~--------~~~~a~~qg~~~a~ni~  384 (706)
                      + +++ |+.|+|||+|||+..+.+.        ++..|..||+.+|+||.
T Consensus       261 ~-~~~-t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  308 (404)
T 3fg2_P          261 Q-QLL-TSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLT  308 (404)
T ss_dssp             T-TSB-CSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTT
T ss_pred             C-Ccc-cCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhC
Confidence            9 688 8999999999999876432        47899999999999994

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.5e-31  Score=285.00  Aligned_cols=281  Identities=19%  Similarity=0.252  Sum_probs=209.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccccccCccccCcccccccccccC-CCcEEEEc-eeE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKD-KIV  106 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~-~v~  106 (706)
                      ..+|||||||+||++||..|++.  + +|+|||+++...|. |+++....+..+.+.+.....+++. .+++++.+ +|+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~--g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~   84 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQT--Y-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK   84 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTT--S-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhc--C-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEE
Confidence            35899999999999999999988  7 99999999875543 6665544444555555444444333 68999886 699


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                      .+|++++.|. .+|.++.||+||+|||+.+..|++||.+                                         
T Consensus        85 ~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~~-----------------------------------------  122 (367)
T 1xhc_A           85 LIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGKE-----------------------------------------  122 (367)
T ss_dssp             EEETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTGG-----------------------------------------
T ss_pred             EEECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCcC-----------------------------------------
Confidence            9999988888 7778899999999999999888888811                                         


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-c
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-S  265 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-~  265 (706)
                          .+.+..+.+.+..+.+.+..  +.++++        ++|++.  +......+++.|.    +|+++++.+.+++ +
T Consensus       123 ----~v~~~~~~~~~~~l~~~~~~--~~~vvV--------iGgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~  182 (367)
T 1xhc_A          123 ----YLLTLRTIFDADRIKESIEN--SGEAII--------IGGGFI--GLELAGNLAEAGY----HVKLIHRGAMFLGLD  182 (367)
T ss_dssp             ----GEECCCSHHHHHHHHHHHHH--HSEEEE--------EECSHH--HHHHHHHHHHTTC----EEEEECSSSCCTTCC
T ss_pred             ----CEEEEcCHHHHHHHHHHhhc--CCcEEE--------ECCCHH--HHHHHHHHHhCCC----EEEEEeCCCeeccCC
Confidence                12222334444444433321  122222        333322  2233344666664    5999999988876 6


Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCCCCCCCceeeCcc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRLVDQSGYVNVDKA  344 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l~~~~G~i~vd~~  344 (706)
                      +++.+.+++.|++.||+++++++|.+++.+  .+.+   ++|+ +++|.||+|+|.+|+. ++.+.++..++| +.||+ 
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~v~~---~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~~g-i~Vd~-  254 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEANEE--GVLT---NSGF-IEGKVKICAIGIVPNVDLARRSGIHTGRG-ILIDD-  254 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECSS--EEEE---TTEE-EECSCEEEECCEEECCHHHHHTTCCBSSS-EECCT-
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEee--EEEE---CCCE-EEcCEEEECcCCCcCHHHHHhCCCCCCCC-EEECC-
Confidence            788999999999999999999999999843  3544   3677 9999999999999994 667788844456 99999 


Q ss_pred             ccccCCCCCEEEccccCCCCC--CchHHHHHHhHHHHHHHHH
Q psy8791         345 TLQHVKYSNVFAIGDCSNLPT--SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       345 ~l~~~~~~~Ifa~GD~~~~~~--~~~~~~a~~qg~~~a~ni~  384 (706)
                      ++| |+.|||||+|||+..+.  ++++..|..||+.+|+||.
T Consensus       255 ~~~-t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~  295 (367)
T 1xhc_A          255 NFR-TSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK  295 (367)
T ss_dssp             TSB-CSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHT
T ss_pred             Ccc-cCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhc
Confidence            788 79999999999986532  4688999999999999995

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=2.1e-31  Score=288.76  Aligned_cols=292  Identities=17%  Similarity=0.191  Sum_probs=215.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccc-cccCccccCcccccccccccCCCcEEEEc-eeE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFT-LIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIV  106 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~v~  106 (706)
                      +++|||||||+||++||..|+++....+|+|||+++++.|. |.+. .+..+....+.+..+...+...+++++.+ +|+
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            35899999999999999999999333459999999987775 4443 24444444555522223333479999997 999


Q ss_pred             EEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         107 SFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       107 ~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                      .+|++.+.|.+.+|+++.||+||+|||+.+..+++||.+                                   .     
T Consensus        82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~-----------------------------------~-----  121 (410)
T 3ef6_A           82 ALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQ-----------------------------------L-----  121 (410)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTT-----------------------------------S-----
T ss_pred             EEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCcc-----------------------------------c-----
Confidence            999999999999999999999999999999988899821                                   0     


Q ss_pred             CCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--  264 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--  264 (706)
                       .  .+....+.+.+..+.+.   +..++.++       .++|+..  +......+.+.|.    +|+++++.+.+++  
T Consensus       122 -~--~v~~~~~~~d~~~l~~~---~~~~~~vv-------ViGgG~~--g~E~A~~l~~~g~----~Vtvv~~~~~~l~~~  182 (410)
T 3ef6_A          122 -P--GVVTLRTYGDVQVLRDS---WTSATRLL-------IVGGGLI--GCEVATTARKLGL----SVTILEAGDELLVRV  182 (410)
T ss_dssp             -T--TEECCCSHHHHHHHHHH---CCTTCEEE-------EECCSHH--HHHHHHHHHHTTC----EEEEECSSSSSSHHH
T ss_pred             -c--ceEEeccHHHHHHHHHH---hccCCeEE-------EECCCHH--HHHHHHHHHhCCC----eEEEEecCCccchhh
Confidence             0  22233344444444332   22232222       2334422  2223334566663    5999999998875  


Q ss_pred             -chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCceeeC
Q psy8791         265 -SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVNVD  342 (706)
Q Consensus       265 -~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~vd  342 (706)
                       ++.+.+.+.+.+++.||++++++.|++++.+++ +..+.+++|+++++|.||+|+|.+|+ +++..+++..++| +.||
T Consensus       183 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~g-i~vd  260 (410)
T 3ef6_A          183 LGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ-LEQVMASDGRSFVADSALICVGAEPADQLARQAGLACDRG-VIVD  260 (410)
T ss_dssp             HCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSS-CCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBSSS-EECC
T ss_pred             cCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCc-EEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccCCe-EEEc
Confidence             688899999999999999999999999987653 22233457899999999999999999 5777788844455 9999


Q ss_pred             ccccccCCCCCEEEccccCCCCCC-------chHHHHHHhHHHHHHHHH
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTS-------KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~-------~~~~~a~~qg~~~a~ni~  384 (706)
                      + +++ |+.|+|||+|||+..+.+       .++..|..||+.+|+||.
T Consensus       261 ~-~~~-t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  307 (410)
T 3ef6_A          261 H-CGA-TLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAIL  307 (410)
T ss_dssp             T-TSB-CSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHT
T ss_pred             c-Cee-ECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHc
Confidence            9 677 899999999999987542       357899999999999994

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.97  E-value=1.3e-30  Score=288.17  Aligned_cols=295  Identities=18%  Similarity=0.219  Sum_probs=198.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCcccc-Cccc-------ccccccccC-CCcE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKK-LSDS-------RRPMKSVLP-SGAT   99 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~~~-~~~~-------~~~~~~~~~-~~v~   99 (706)
                      +++|+|||||+|||+||.+|+++.++++|+|||+++.+.|.+ .++...++... .+.+       ......+.. .+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            469999999999999999999987789999999999877764 35544433332 2222       222333443 5788


Q ss_pred             EEE-ceeEEEEcCCCEEEeCC---Ce--EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccc
Q psy8791         100 WVK-DKIVSFDPENNRVRTQA---GS--EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLD  173 (706)
Q Consensus       100 ~i~-~~v~~id~~~~~v~~~~---g~--~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (706)
                      +.. .+|+++|++.+.+.+.+   |.  ++.||+||+|||+.+..|++||.+                            
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~----------------------------  134 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMD----------------------------  134 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTT----------------------------
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCC----------------------------
Confidence            754 79999999999888765   55  789999999999999988899831                            


Q ss_pred             cccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHc-CCCCCcE
Q psy8791         174 FLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKH-KKRDAAK  252 (706)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~-g~~~~~~  252 (706)
                             .      .  .+....+...+..+.+.+......+++        .++|+..  +......+.+. |.    +
T Consensus       135 -------~------~--~v~~~~~~~~~~~l~~~l~~~~~~~vv--------ViGgG~~--g~e~A~~l~~~~g~----~  185 (472)
T 3iwa_A          135 -------L------A--GVTPVTNLDEAEFVQHAISAGEVSKAV--------IVGGGFI--GLEMAVSLADMWGI----D  185 (472)
T ss_dssp             -------S------B--TEEECCSHHHHHHHHHHCCTTSCSEEE--------EECCSHH--HHHHHHHHHHHHCC----E
T ss_pred             -------C------C--CEEEeCCHHHHHHHHHHhhcCCCCEEE--------EECCCHH--HHHHHHHHHHhcCC----c
Confidence                   0      0  122223334444333333222222222        2334422  12222344555 54    5


Q ss_pred             EEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhh
Q psy8791         253 LTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELA  328 (706)
Q Consensus       253 v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~  328 (706)
                      |+++++.+.+++   ++.+.+.+.+.+++.||+++++++|++++.+++.+.+. +++|+++++|.||+|+|.+|+ .++.
T Consensus       186 Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~-~~~g~~i~aD~Vv~a~G~~p~~~l~~  264 (472)
T 3iwa_A          186 TTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARV-ITDKRTLDADLVILAAGVSPNTQLAR  264 (472)
T ss_dssp             EEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEE-EESSCEEECSEEEECSCEEECCHHHH
T ss_pred             EEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEE-EeCCCEEEcCEEEECCCCCcCHHHHH
Confidence            999999988776   68899999999999999999999999998755555432 347889999999999999999 4555


Q ss_pred             cCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         329 TSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       329 ~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      +.|+ .+++|+|.||+ +++ |+.|||||+|||+..+.        ++++..|..||+++|+||.
T Consensus       265 ~~gl~~~~~g~i~vd~-~~~-t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  327 (472)
T 3iwa_A          265 DAGLELDPRGAIIVDT-RMR-TSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLA  327 (472)
T ss_dssp             HHTCCBCTTCCEECCT-TCB-CSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHT
T ss_pred             hCCccCCCCCCEEECC-Ccc-cCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhc
Confidence            6788 67899999999 688 89999999999995422        3477899999999999995

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.97  E-value=3.5e-30  Score=282.73  Aligned_cols=293  Identities=17%  Similarity=0.228  Sum_probs=207.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCccccCccccc-cccccc-CCCcEEEEc-ee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKLSDSRR-PMKSVL-PSGATWVKD-KI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~~i~~-~v  105 (706)
                      +++|||||||+||++||..|++..++++|+|||+++++.+.| .++....+....+.+.. +...+. ..+++++.+ +|
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            479999999999999999999987789999999999877765 35544444433443332 334442 478999886 99


Q ss_pred             EEEEcCCCEEEeCCC-eEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         106 VSFDPENNRVRTQAG-SEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       106 ~~id~~~~~v~~~~g-~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      +.++++.+.+.+.++ .++.||+||+|||+.+..|++||.+                                   .   
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~-----------------------------------~---  124 (449)
T 3kd9_A           83 IEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVN-----------------------------------L---  124 (449)
T ss_dssp             EEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTT-----------------------------------S---
T ss_pred             EEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCC-----------------------------------C---
Confidence            999998888888877 4899999999999999888888832                                   0   


Q ss_pred             hcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP  264 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~  264 (706)
                         .  .+....+.+.+....+.+..+.+.++++        ++|+..  +......+.+.|.    +|+++++.+++++
T Consensus       125 ---~--~v~~~~~~~~~~~~~~~~~~~~~~~vvV--------iGgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~  185 (449)
T 3kd9_A          125 ---K--GVFTADLPPDALAIREYMEKYKVENVVI--------IGGGYI--GIEMAEAFAAQGK----NVTMIVRGERVLR  185 (449)
T ss_dssp             ---T--TEECSCSTHHHHHHHHHHSSSCCCEEEE--------ECCSHH--HHHHHHHHHHTTC----EEEEEESSSSTTT
T ss_pred             ---C--CEEEeCCHHHHHHHHHHHHhcCCCeEEE--------ECCCHH--HHHHHHHHHhCCC----eEEEEEcCCccch
Confidence               0  1222233344444444443333333322        334422  2223345666663    5999999988875


Q ss_pred             ---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCCCce
Q psy8791         265 ---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQSGYV  339 (706)
Q Consensus       265 ---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~G~i  339 (706)
                         ++.+.+.+++.+++. |++++++.+.+++.+++ +..+. .+++++++|.||+|+|.+|+ +++...|+ .+++|+|
T Consensus       186 ~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~~-v~~v~-~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i  262 (449)
T 3kd9_A          186 RSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEER-VEKVV-TDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAI  262 (449)
T ss_dssp             TTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSSS-CCEEE-ETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSB
T ss_pred             hhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccCc-EEEEE-eCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCE
Confidence               678899999999999 99999999999987653 22222 26789999999999999999 56666788 7888999


Q ss_pred             eeCccccccCCCCCEEEccccCCCC--------CCchHHHHHHhHHHHHHHHH
Q psy8791         340 NVDKATLQHVKYSNVFAIGDCSNLP--------TSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       340 ~vd~~~l~~~~~~~Ifa~GD~~~~~--------~~~~~~~a~~qg~~~a~ni~  384 (706)
                      .||+ +++ |+.|||||+|||+..+        .++++..|..||+++|+||.
T Consensus       263 ~vd~-~~~-t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~  313 (449)
T 3kd9_A          263 WTNE-KMQ-TSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIA  313 (449)
T ss_dssp             CCCT-TCB-CSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT
T ss_pred             EECC-CCc-cCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhc
Confidence            9999 688 8999999999998642        14688999999999999994

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.97  E-value=8.5e-30  Score=288.37  Aligned_cols=295  Identities=19%  Similarity=0.203  Sum_probs=216.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCcccc-Ccc-cccccccccC-CCcEEE-Ece
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKK-LSD-SRRPMKSVLP-SGATWV-KDK  104 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~~~-~~~-~~~~~~~~~~-~~v~~i-~~~  104 (706)
                      +++|+|||||+|||+||.+|+++.++++|+|||+++++.|.+ .++....+... ... +......+.. .++++. ..+
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE   80 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence            368999999999999999999987789999999999877764 34544333322 222 2233344443 588885 489


Q ss_pred             eEEEEcCCCEEEeCC---Ce--EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCcc
Q psy8791         105 IVSFDPENNRVRTQA---GS--EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPS  179 (706)
Q Consensus       105 v~~id~~~~~v~~~~---g~--~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (706)
                      |+++|++.+.+.+.+   |.  ++.||+||+|||+.+..|++||.+                                  
T Consensus        81 V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~----------------------------------  126 (565)
T 3ntd_A           81 VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVD----------------------------------  126 (565)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCC----------------------------------
T ss_pred             EEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCC----------------------------------
Confidence            999999999887753   43  789999999999999999999932                                  


Q ss_pred             chhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC
Q psy8791         180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM  259 (706)
Q Consensus       180 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~  259 (706)
                       .      .  .+....+...+..+.+.+......++++        ++|+..  +......+.+.|.    +|+++++.
T Consensus       127 -~------~--~v~~~~~~~~~~~l~~~~~~~~~~~vvV--------iGgG~~--g~e~A~~l~~~g~----~Vtlv~~~  183 (565)
T 3ntd_A          127 -N------P--LTHSLRNIPDMDRILQTIQMNNVEHATV--------VGGGFI--GLEMMESLHHLGI----KTTLLELA  183 (565)
T ss_dssp             -S------T--TEECCSSHHHHHHHHHHHHHTTCSEEEE--------ECCSHH--HHHHHHHHHHTTC----EEEEEESS
T ss_pred             -C------C--CEEEeCCHHHHHHHHHHHhhCCCCEEEE--------ECCCHH--HHHHHHHHHhcCC----cEEEEEcC
Confidence             0      0  1222233334444444444443333322        344422  2223334566664    59999999


Q ss_pred             CcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeC-------------------CCCEEEEEeCCCceEEeecEEEEC
Q psy8791         260 GVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDL-------------------ANKEAVFKSEDKTERLPYAIMHVT  318 (706)
Q Consensus       260 ~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-------------------~~~~v~~~~~~~g~~i~~D~vI~a  318 (706)
                      +.+++  ++.+.+.+.+.+++.||++++++.+.+++.                   +++.+.... ++|+++++|.||+|
T Consensus       184 ~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~~i~~D~vi~a  262 (565)
T 3ntd_A          184 DQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTL-SNGELLETDLLIMA  262 (565)
T ss_dssp             SSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEE-TTSCEEEESEEEEC
T ss_pred             CccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEE-cCCCEEEcCEEEEC
Confidence            98876  688899999999999999999999999986                   344454433 57889999999999


Q ss_pred             CCCCch-hhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCC--------CCchHHHHHHhHHHHHHHHH
Q psy8791         319 PPMGPV-PELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP--------TSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       319 ~G~~~~-~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~--------~~~~~~~a~~qg~~~a~ni~  384 (706)
                      +|.+|+ .++...|+ .+++|+|.||+ +++ |+.|||||+|||+..+        .++++..|..||+++|+||.
T Consensus       263 ~G~~p~~~l~~~~g~~~~~~g~i~vd~-~~~-t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  336 (565)
T 3ntd_A          263 IGVRPETQLARDAGLAIGELGGIKVNA-MMQ-TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMF  336 (565)
T ss_dssp             SCEEECCHHHHHHTCCBCTTSSBCCCT-TCB-CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred             cCCccchHHHHhCCcccCCCCCEEECC-Ccc-cCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhc
Confidence            999999 55566688 68889999999 788 8999999999998532        23578899999999999995

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.97  E-value=4.6e-30  Score=277.85  Aligned_cols=285  Identities=17%  Similarity=0.214  Sum_probs=207.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccc-cccCccccCcccccccccccCCCcEEEEce-e
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFT-LIGGGMKKLSDSRRPMKSVLPSGATWVKDK-I  105 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-v  105 (706)
                      ..++|+|||||+||++||.+|++.....+|+|||+++...|. |.++ .+..+.. .+....  ..+...+++++.++ |
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~v~~~~~~~v   82 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD-AEKIRL--DCKRAPEVEWLLGVTA   82 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCC-GGGSBC--CCTTSCSCEEEETCCE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCc-hhhhhH--HHHHHCCCEEEcCCEE
Confidence            357999999999999999999998333369999999876554 3332 1222212 222221  23345789999875 9


Q ss_pred             EEEEcCCCEEEeCCCeEEEecEEEEccccccccCCC-CCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         106 VSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV-KGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      +.+|++.++|.+.+|.++.||+||+|||+.+..|++ ||.+  +                                    
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~--~------------------------------------  124 (408)
T 2gqw_A           83 QSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGAT--M------------------------------------  124 (408)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCS--S------------------------------------
T ss_pred             EEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCC--C------------------------------------
Confidence            999999999999988899999999999999988888 8821  0                                    


Q ss_pred             hcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP  264 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~  264 (706)
                            .+....+.+.+..+.+   .+..++.++       .++|+..  ++.....+.+.|.    +|+++++.+.+++
T Consensus       125 ------~v~~~~~~~~~~~l~~---~~~~~~~vv-------ViGgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~  182 (408)
T 2gqw_A          125 ------PVHTLRTLEDARRIQA---GLRPQSRLL-------IVGGGVI--GLELAATARTAGV----HVSLVETQPRLMS  182 (408)
T ss_dssp             ------CEEECCSHHHHHHHHT---TCCTTCEEE-------EECCSHH--HHHHHHHHHHTTC----EEEEEESSSSSST
T ss_pred             ------cEEEECCHHHHHHHHH---HhhcCCeEE-------EECCCHH--HHHHHHHHHhCCC----EEEEEEeCCcccc
Confidence                  2222233333333222   122222222       2344422  2233345666664    5999999988875


Q ss_pred             ---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCcee
Q psy8791         265 ---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVN  340 (706)
Q Consensus       265 ---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~  340 (706)
                         ++.+.+.+.+.+++.||+++++++|.+++ ++ .+++   ++|+++++|.||+|+|.+|+ +++.+.++..++| |.
T Consensus       183 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~-~v~~---~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~  256 (408)
T 2gqw_A          183 RAAPATLADFVARYHAAQGVDLRFERSVTGSV-DG-VVLL---DDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IF  256 (408)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TT-EEEE---TTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EE
T ss_pred             cccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CC-EEEE---CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EE
Confidence               57889999999999999999999999998 43 4444   47889999999999999999 5677778844466 99


Q ss_pred             eCccccccCCCCCEEEccccCCCCCC--------chHHHHHHhHHHHHHHHH
Q psy8791         341 VDKATLQHVKYSNVFAIGDCSNLPTS--------KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       341 vd~~~l~~~~~~~Ifa~GD~~~~~~~--------~~~~~a~~qg~~~a~ni~  384 (706)
                      ||+ ++| |+.|+|||+|||+..+.+        ..+..|..||+.+|+||.
T Consensus       257 Vd~-~~~-t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  306 (408)
T 2gqw_A          257 VDA-YGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV  306 (408)
T ss_dssp             CCT-TCB-CSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHH
T ss_pred             ECC-CCc-cCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhc
Confidence            999 688 799999999999987532        267899999999999996

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.97  E-value=9.1e-30  Score=289.04  Aligned_cols=298  Identities=15%  Similarity=0.191  Sum_probs=220.1

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCccccC-cc-ccccccccc-CCCcEEE
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKL-SD-SRRPMKSVL-PSGATWV  101 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~~~~-~~-~~~~~~~~~-~~~v~~i  101 (706)
                      +...+++|||||||+|||+||.+|++..++++|+|||+++.+.|.+ .++...++.... +. +..++..+. ..++++.
T Consensus        32 ~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~  111 (588)
T 3ics_A           32 DRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIR  111 (588)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEE
T ss_pred             CcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEE
Confidence            3445689999999999999999999987789999999999877764 455544443322 22 333444444 3688885


Q ss_pred             E-ceeEEEEcCCCEEEeC---CCe--EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccc
Q psy8791         102 K-DKIVSFDPENNRVRTQ---AGS--EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFL  175 (706)
Q Consensus       102 ~-~~v~~id~~~~~v~~~---~g~--~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (706)
                      . .+|++++++.+.+.+.   +|.  ++.||+||+|||+.+..|++||.+                              
T Consensus       112 ~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~------------------------------  161 (588)
T 3ics_A          112 VLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIE------------------------------  161 (588)
T ss_dssp             CSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTT------------------------------
T ss_pred             ECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcc------------------------------
Confidence            4 8999999999988774   455  789999999999999988899831                              


Q ss_pred             cCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEE
Q psy8791         176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTY  255 (706)
Q Consensus       176 ~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l  255 (706)
                             +   ..  .+....+...+..+...+......++++        ++|+..  +......+.+.|.    +|++
T Consensus       162 -------~---~~--~v~~~~~~~~~~~~~~~l~~~~~~~vvV--------iGgG~~--g~e~A~~l~~~g~----~Vtl  215 (588)
T 3ics_A          162 -------E---AK--ALFTLRNVPDTDRIKAYIDEKKPRHATV--------IGGGFI--GVEMVENLRERGI----EVTL  215 (588)
T ss_dssp             -------T---CT--TEEECSSHHHHHHHHHHHHHHCCSEEEE--------ECCSHH--HHHHHHHHHHTTC----EEEE
T ss_pred             -------c---CC--CeEEeCCHHHHHHHHHHHhhcCCCeEEE--------ECCCHH--HHHHHHHHHhCCC----eEEE
Confidence                   0   00  1222233334444444444333333322        334422  2233344666664    5999


Q ss_pred             EeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC
Q psy8791         256 CTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL  332 (706)
Q Consensus       256 ~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l  332 (706)
                      +++.+.+++  ++.+.+.+.+.|++.||+++++++|++++.+++.+.+   ++|+++++|.||+|+|++|+ +++...|+
T Consensus       216 v~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~---~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~  292 (588)
T 3ics_A          216 VEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRL---KSGSVIQTDMLILAIGVQPESSLAKGAGL  292 (588)
T ss_dssp             ECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEE---TTSCEEECSEEEECSCEEECCHHHHHTTC
T ss_pred             EecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEE---CCCCEEEcCEEEEccCCCCChHHHHhcCc
Confidence            999988886  6889999999999999999999999999876555554   37889999999999999999 46667888


Q ss_pred             -CCCCCceeeCccccccCCCCCEEEccccCCCC--------CCchHHHHHHhHHHHHHHHH
Q psy8791         333 -VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP--------TSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       333 -~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~--------~~~~~~~a~~qg~~~a~ni~  384 (706)
                       .+++|+|.||+ +++ |+.|+|||+|||+..+        .++++..|..||+++|+||.
T Consensus       293 ~~~~~g~i~vd~-~~~-t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  351 (588)
T 3ics_A          293 ALGVRGTIKVNE-KFQ-TSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIH  351 (588)
T ss_dssp             CBCGGGCBCCCT-TSB-CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred             eEcCCCCEEECC-ccc-cCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhc
Confidence             77899999999 688 8999999999999532        24688899999999999994

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.97  E-value=1.7e-29  Score=275.34  Aligned_cols=296  Identities=14%  Similarity=0.185  Sum_probs=209.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccc-cccCccccCccccccccc-ccCCCcEEEE-cee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFT-LIGGGMKKLSDSRRPMKS-VLPSGATWVK-DKI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~-~~~~~~~~~~~~~~~~~~-~~~~~v~~i~-~~v  105 (706)
                      .++|||||||+||++||..|++.....+|+|||+++...|. |.+. .+..+....+.+.....+ +...+++++. .+|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            57999999999999999999998322389999999875553 2222 122222223333222222 2346899887 478


Q ss_pred             EEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         106 VSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                      +.++++.+.|.+.+|+++.||+||+|||+.+..+++||.+                                   ...  
T Consensus        84 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~-----------------------------------~~~--  126 (431)
T 1q1r_A           84 TAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGA-----------------------------------VGK--  126 (431)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTH-----------------------------------HHH--
T ss_pred             EEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcc-----------------------------------cCC--
Confidence            9999998999999888999999999999999888888821                                   000  


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-  264 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-  264 (706)
                       ..  .+....+.+.+..+.+.   +..++.++       .++|+..  ++.....+.+.|.    +|+++++.+.+++ 
T Consensus       127 -~~--~v~~~~~~~d~~~l~~~---l~~~~~vv-------ViGgG~~--g~E~A~~l~~~G~----~Vtlv~~~~~~l~~  187 (431)
T 1q1r_A          127 -AN--NFRYLRTLEDAECIRRQ---LIADNRLV-------VIGGGYI--GLEVAATAIKANM----HVTLLDTAARVLER  187 (431)
T ss_dssp             -ST--TEEESSSHHHHHHHHHT---CCTTCEEE-------EECCSHH--HHHHHHHHHHTTC----EEEEECSSSSTTTT
T ss_pred             -Cc--eEEEECCHHHHHHHHHH---hhcCCeEE-------EECCCHH--HHHHHHHHHhCCC----EEEEEEeCCccccc
Confidence             00  12223334443333222   22222222       2334422  2233345666664    5999999888765 


Q ss_pred             --chhHHHHHHHHHHhCCceEEcCCceEEEeC--CCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCce
Q psy8791         265 --SPFYAEKIHDILIGRGVDVHKGKALVEIDL--ANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYV  339 (706)
Q Consensus       265 --~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i  339 (706)
                        ++.+.+.+.+.+++.||++++++.|.+++.  +++.+..+.+++|+++++|.||+|+|.+|+ +++..+++..++| |
T Consensus       188 ~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~g-i  266 (431)
T 1q1r_A          188 VTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNG-I  266 (431)
T ss_dssp             TSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-E
T ss_pred             hhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCCC-E
Confidence              578889999999999999999999999986  434343334457889999999999999999 5677788844456 9


Q ss_pred             eeCccccccCCCCCEEEccccCCCCCCc--------hHHHHHHhHHHHHHHHH
Q psy8791         340 NVDKATLQHVKYSNVFAIGDCSNLPTSK--------TAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       340 ~vd~~~l~~~~~~~Ifa~GD~~~~~~~~--------~~~~a~~qg~~~a~ni~  384 (706)
                      .||+ +++ |+.|+|||+|||+..+.+.        .+..|..||+.+|+||.
T Consensus       267 ~Vd~-~~~-ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  317 (431)
T 1q1r_A          267 VINE-HMQ-TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC  317 (431)
T ss_dssp             ECCT-TSB-CSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             EECC-Ccc-cCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhc
Confidence            9999 687 8999999999999875432        56889999999999995

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.97  E-value=1.7e-29  Score=277.44  Aligned_cols=291  Identities=15%  Similarity=0.172  Sum_probs=209.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc-cccccCccc---cCccccccccccc-CCCcEEEE-ce
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM-FTLIGGGMK---KLSDSRRPMKSVL-PSGATWVK-DK  104 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~-~~~~~~~~~---~~~~~~~~~~~~~-~~~v~~i~-~~  104 (706)
                      +||||||||+||++||.+|++..++.+|+|||+++...+.+. ++....+..   .++.+.....+.+ ..+++++. .+
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            589999999999999999999867899999999987555432 332223322   2344443433333 36899866 56


Q ss_pred             eEEEEcCCCEEEeCC-----CeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCcc
Q psy8791         105 IVSFDPENNRVRTQA-----GSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPS  179 (706)
Q Consensus       105 v~~id~~~~~v~~~~-----g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (706)
                      |+.++++.+.+.+.+     +.++.||+||+|||+.+..|++||.+                                  
T Consensus        81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~----------------------------------  126 (452)
T 2cdu_A           81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGID----------------------------------  126 (452)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTT----------------------------------
T ss_pred             EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCC----------------------------------
Confidence            999998888888754     46799999999999999988889831                                  


Q ss_pred             chhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC
Q psy8791         180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM  259 (706)
Q Consensus       180 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~  259 (706)
                       .      .  .+....+......+.+.+   ..++.++       .++|+..  +......+.+.|.    +|+++++.
T Consensus       127 -~------~--~v~~~~~~~~~~~~~~~~---~~~~~vv-------ViGgG~~--g~E~A~~l~~~g~----~Vtlv~~~  181 (452)
T 2cdu_A          127 -S------S--RVYLCKNYNDAKKLFEEA---PKAKTIT-------IIGSGYI--GAELAEAYSNQNY----NVNLIDGH  181 (452)
T ss_dssp             -S------T--TEEECSSHHHHHHHHHHG---GGCSEEE-------EECCSHH--HHHHHHHHHTTTC----EEEEEESS
T ss_pred             -C------C--CEEEeCcHHHHHHHHHHh---ccCCeEE-------EECcCHH--HHHHHHHHHhcCC----EEEEEEcC
Confidence             0      0  122222333333333322   1222222       2333322  2222334555553    59999999


Q ss_pred             CcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCC-CC
Q psy8791         260 GVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRL-VD  334 (706)
Q Consensus       260 ~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l-~~  334 (706)
                      +.+++   ++.+.+.+.+.+++.||+++++++|++++.+++.+..+.+ +|+++++|.||+|+|.+|+. ++... + .+
T Consensus       182 ~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~  259 (452)
T 2cdu_A          182 ERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPNTELLKGK-VAML  259 (452)
T ss_dssp             SSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEECCGGGTTT-SCBC
T ss_pred             CchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCCHHHHHHh-hhcC
Confidence            88775   6889999999999999999999999999864445544444 67899999999999999994 44444 6 57


Q ss_pred             CCCceeeCccccccCCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         335 QSGYVNVDKATLQHVKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       335 ~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      ++|+|.||+ ++| |+.|||||+|||+..+.        ++++..|..||+++|+||.
T Consensus       260 ~~G~i~Vd~-~~~-t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  315 (452)
T 2cdu_A          260 DNGAIITDE-YMH-SSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLT  315 (452)
T ss_dssp             TTSCBCCCT-TSB-CSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             CCCCEEECC-CcC-cCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhC
Confidence            789999999 688 79999999999998632        3578999999999999994

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.97  E-value=9.9e-30  Score=279.29  Aligned_cols=291  Identities=18%  Similarity=0.257  Sum_probs=202.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc-cccccCcc-ccCcccccc-cccccCCCcEEEE-ceeE
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM-FTLIGGGM-KKLSDSRRP-MKSVLPSGATWVK-DKIV  106 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~-~~~~~~~~-~~~~~~~~~-~~~~~~~~v~~i~-~~v~  106 (706)
                      ++|||||||+||++||.+|+++.++++|+|||++++..|.+. ++....+. ...+.+... ...+.+.++++.. .+|+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            699999999999999999999877899999999998776653 33333322 233344332 2333447888854 7899


Q ss_pred             EEEcCCCEEEeC---CCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhh
Q psy8791         107 SFDPENNRVRTQ---AGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQE  183 (706)
Q Consensus       107 ~id~~~~~v~~~---~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (706)
                      ++|++.+.+.+.   ++.++.||+||+|||+.+..|++||.+                 .+..+..+.++          
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-----------------~~~v~~~~~~~----------  135 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQ-----------------TEKLLKYKFLS----------  135 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTT-----------------CTTEEEGGGCC----------
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCC-----------------CCCEEEeCCHH----------
Confidence            999999988763   456899999999999999988899832                 00111111111          


Q ss_pred             hhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCC
Q psy8791         184 ALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLF  263 (706)
Q Consensus       184 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~  263 (706)
                                      ....+.+...   .++.+       +.++|+..  +......+.+.|.    +|+++++.+.++
T Consensus       136 ----------------~~~~~~~~~~---~~~~v-------vViGgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l  183 (452)
T 3oc4_A          136 ----------------GALAAVPLLE---NSQTV-------AVIGAGPI--GMEAIDFLVKMKK----TVHVFESLENLL  183 (452)
T ss_dssp             --------------------CCHHHH---TCSEE-------EEECCSHH--HHHHHHHHHHTTC----EEEEEESSSSSS
T ss_pred             ----------------HHHHHHHHHh---cCCEE-------EEECCCHH--HHHHHHHHHhCCC----eEEEEEccCccc
Confidence                            1111111111   11111       22333322  2233345666663    599999998887


Q ss_pred             C---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC-CCCCCce
Q psy8791         264 P---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL-VDQSGYV  339 (706)
Q Consensus       264 ~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l-~~~~G~i  339 (706)
                      +   ++.+.+.+.+.+++.||+++++++|++++.+++.+.+ .+++| ++++|.||+|+|.+|+..+.+..+ .+++|+|
T Consensus       184 ~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v-~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i  261 (452)
T 3oc4_A          184 PKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVL-ETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTI  261 (452)
T ss_dssp             TTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEE-EESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCB
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEE-EECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCE
Confidence            5   6889999999999999999999999999854444533 33455 899999999999999965544445 6788999


Q ss_pred             eeCccccccCCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         340 NVDKATLQHVKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       340 ~vd~~~l~~~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      .||+ ++| |+.|||||+|||+..+.        ++++..|..||+++|+||.
T Consensus       262 ~vd~-~~~-t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  312 (452)
T 3oc4_A          262 AVDA-YLQ-TSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLE  312 (452)
T ss_dssp             CCCT-TCB-CSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSS
T ss_pred             EECc-Ccc-CCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhc
Confidence            9999 688 89999999999998642        2578899999999999984

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.97  E-value=1.1e-28  Score=272.67  Aligned_cols=294  Identities=17%  Similarity=0.196  Sum_probs=213.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCcc-ccCcccccc-cccccC-CCcEEEE-ce
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGM-KKLSDSRRP-MKSVLP-SGATWVK-DK  104 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~-~~~~~~~~~-~~~~~~-~~v~~i~-~~  104 (706)
                      ++||||||||+||++||.+|++..++.+|+|||+++...+.+ .++....+. ...+.+... ...+.+ .+++++. .+
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            479999999999999999999975689999999998765553 344332222 123333222 233323 4899887 68


Q ss_pred             eEEEEcCCCEEEeCC---Ce--EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCcc
Q psy8791         105 IVSFDPENNRVRTQA---GS--EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPS  179 (706)
Q Consensus       105 v~~id~~~~~v~~~~---g~--~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (706)
                      |+.++++.+.+.+.+   |+  ++.||+||+|||+.+..|++||.+                                  
T Consensus       116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~----------------------------------  161 (480)
T 3cgb_A          116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRD----------------------------------  161 (480)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTT----------------------------------
T ss_pred             EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCcc----------------------------------
Confidence            999999888887753   65  799999999999999888888831                                  


Q ss_pred             chhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC
Q psy8791         180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM  259 (706)
Q Consensus       180 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~  259 (706)
                         .    .  .+.+..+.+.+..+.+.+......+++        .++|++.  +......+.+.|.    +|+++++.
T Consensus       162 ---~----~--~v~~~~~~~~~~~l~~~~~~~~~~~vv--------ViGgG~~--g~e~A~~l~~~g~----~Vtlv~~~  218 (480)
T 3cgb_A          162 ---L----Q--GVHLLKTIPDAERILKTLETNKVEDVT--------IIGGGAI--GLEMAETFVELGK----KVRMIERN  218 (480)
T ss_dssp             ---S----B--TEECCSSHHHHHHHHHHHHSSCCCEEE--------EECCHHH--HHHHHHHHHHTTC----EEEEECCG
T ss_pred             ---C----C--CEEEeCCHHHHHHHHHHhhhcCCCeEE--------EECCCHH--HHHHHHHHHhcCC----eEEEEEeC
Confidence               0    0  223333445555555444432222222        2344432  2223345666664    59999998


Q ss_pred             CcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCC
Q psy8791         260 GVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQ  335 (706)
Q Consensus       260 ~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~  335 (706)
                      +.+++  ++.+.+.+.+.+++.||++++++.|.+++.+++ +..+.+ ++.++++|.||+|+|.+|+ +++...++ .++
T Consensus       219 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-v~~v~~-~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~  296 (480)
T 3cgb_A          219 DHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNER-VEAVET-DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNH  296 (480)
T ss_dssp             GGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSB-EEEEEE-TTEEEECSEEEECSCEEESCGGGTTSCCCBCT
T ss_pred             CchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCc-EEEEEE-CCCEEEcCEEEECcCCCcChHHHHhCCcccCC
Confidence            88876  688999999999999999999999999987643 332233 3568999999999999999 56677787 677


Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      +|+|.||+ ++| |+.|+|||+|||+..+.        ++++..|..||+++|+||.
T Consensus       297 ~G~I~Vd~-~~~-ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  351 (480)
T 3cgb_A          297 KGAIEVNA-YMQ-TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNML  351 (480)
T ss_dssp             TSCBCCCT-TSB-CSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEECC-Ccc-CCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhc
Confidence            89999999 688 78999999999997532        2568899999999999995

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.97  E-value=1.1e-28  Score=265.30  Aligned_cols=306  Identities=17%  Similarity=0.234  Sum_probs=214.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccccccCccccCccccc-cccccc-CCCcEEEE-cee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRR-PMKSVL-PSGATWVK-DKI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~~i~-~~v  105 (706)
                      +++|||||||+||++||..|++...+.+|+|||+++...|. |.++...........+.. ....+. ..+++++. .+|
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            47999999999999999999998444789999998854443 444433222222222322 233333 36899886 579


Q ss_pred             EEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         106 VSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                      +.++++.++|.+.+ .++.||+||+|||+.+..|++||.+                                   ..   
T Consensus        84 ~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~g~~-----------------------------------~~---  124 (384)
T 2v3a_A           84 TGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVEGDA-----------------------------------QD---  124 (384)
T ss_dssp             CEEEGGGTEEEETT-EEEECSEEEECCCEEECCCCCBSTT-----------------------------------TT---
T ss_pred             EEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCCCcC-----------------------------------cC---
Confidence            99999888898875 4799999999999999888888821                                   00   


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-  264 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-  264 (706)
                           .+.+..+...+..+.+.+.   .++.++       .++|+..  +......+.+.|.    +|+++++.+.+++ 
T Consensus       125 -----~v~~~~~~~~~~~~~~~~~---~~~~v~-------ViGgG~~--g~e~A~~l~~~g~----~Vtlv~~~~~~~~~  183 (384)
T 2v3a_A          125 -----ALYPINDLEDYARFRQAAA---GKRRVL-------LLGAGLI--GCEFANDLSSGGY----QLDVVAPCEQVMPG  183 (384)
T ss_dssp             -----CEEECSSHHHHHHHHHHHT---TCCEEE-------EECCSHH--HHHHHHHHHHTTC----EEEEEESSSSSSTT
T ss_pred             -----CEEEECCHHHHHHHHHhhc---cCCeEE-------EECCCHH--HHHHHHHHHhCCC----eEEEEecCcchhhc
Confidence                 1222222333333333332   122222       2344432  2233345666664    5999999888775 


Q ss_pred             --chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCCCCCCCceee
Q psy8791         265 --SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRLVDQSGYVNV  341 (706)
Q Consensus       265 --~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l~~~~G~i~v  341 (706)
                        ++.+.+.+.+.+++.||+++++++|.+++.+++.+.+. +++|+++++|.||+|+|.+|+. ++.+.++..++| |.|
T Consensus       184 ~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~v  261 (384)
T 2v3a_A          184 LLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAH-LSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVV  261 (384)
T ss_dssp             TSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEE-ETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEE
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEE-ECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEE
Confidence              67888999999999999999999999998655544443 3478899999999999999995 667788843468 999


Q ss_pred             CccccccCCCCCEEEccccCCCCC--CchHHHHHHhHHHHHHHHHHHHcCCCCCCcccceeeEE
Q psy8791         342 DKATLQHVKYSNVFAIGDCSNLPT--SKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCP  403 (706)
Q Consensus       342 d~~~l~~~~~~~Ifa~GD~~~~~~--~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~~  403 (706)
                      |+ ++| |+.|||||+|||+..+.  ...+..|..||+++|+||.    |++.++.|.....++
T Consensus       262 d~-~~~-t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~----g~~~~~~~~~~p~~~  319 (384)
T 2v3a_A          262 DR-SLR-TSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLA----GNPSQVAYGPMPVTV  319 (384)
T ss_dssp             CT-TCB-CSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHT----TCCCCCCCCCCCEEE
T ss_pred             CC-CCC-CCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhc----CCCccCCCCCcceEE
Confidence            99 688 89999999999996432  2356778999999999994    554455555544443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.97  E-value=9.2e-29  Score=271.27  Aligned_cols=292  Identities=15%  Similarity=0.213  Sum_probs=208.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-ccccccCcc-ccCcccccccccc-cCCCcEEEE-ceeE
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-MFTLIGGGM-KKLSDSRRPMKSV-LPSGATWVK-DKIV  106 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-~~~~~~~~~-~~~~~~~~~~~~~-~~~~v~~i~-~~v~  106 (706)
                      +||||||||+||++||..|++..++.+|+|||+++...|.+ .++....+. ...+.+.....+. .+.+++++. .+|+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            48999999999999999999986689999999998765544 233322222 2233333333333 336899855 6888


Q ss_pred             EEEcCCCEEEeCC---Ce--EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccch
Q psy8791         107 SFDPENNRVRTQA---GS--EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGL  181 (706)
Q Consensus       107 ~id~~~~~v~~~~---g~--~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (706)
                      .++++.+.|.+.+   |+  ++.||+||+|||+.+..|++||.+                                   .
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~-----------------------------------~  125 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKD-----------------------------------L  125 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTT-----------------------------------S
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCC-----------------------------------C
Confidence            9999999888754   54  489999999999999988899821                                   0


Q ss_pred             hhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc
Q psy8791         182 QEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV  261 (706)
Q Consensus       182 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~  261 (706)
                            .  .+.+..+.+.+..+.+.+......+++        .++|++.  +......+++.|.    +|+++++.+.
T Consensus       126 ------~--~v~~~~~~~~~~~l~~~~~~~~~~~vv--------IiG~G~~--g~e~A~~l~~~g~----~Vtlv~~~~~  183 (447)
T 1nhp_A          126 ------D--NIYLMRGRQWAIKLKQKTVDPEVNNVV--------VIGSGYI--GIEAAEAFAKAGK----KVTVIDILDR  183 (447)
T ss_dssp             ------B--SEECCCHHHHHHHHHHHHTCTTCCEEE--------EECCSHH--HHHHHHHHHHTTC----EEEEEESSSS
T ss_pred             ------C--CeEEECCHHHHHHHHHHhhhcCCCeEE--------EECCCHH--HHHHHHHHHHCCC----eEEEEecCcc
Confidence                  0  122222333344444433321222222        2344432  2333345666664    5999999888


Q ss_pred             CCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCC
Q psy8791         262 LFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQS  336 (706)
Q Consensus       262 ~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~  336 (706)
                      +++   ++++.+.+.+.+++.||++++++.|.+++.+++ +..+.+ +++++++|.||+|+|.+|+ +++... + .+++
T Consensus       184 ~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~  260 (447)
T 1nhp_A          184 PLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR-VQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPN  260 (447)
T ss_dssp             TTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSB-CCEEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTT
T ss_pred             cccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCc-EEEEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCC
Confidence            764   578899999999999999999999999987643 311222 4678999999999999999 455555 6 5678


Q ss_pred             CceeeCccccccCCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         337 GYVNVDKATLQHVKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       337 G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+|.||+ +++ |+.|+|||+|||+..+.        ++++..|..||+++|+||.
T Consensus       261 G~i~Vd~-~~~-t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  314 (447)
T 1nhp_A          261 GLIKTDE-YMR-TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE  314 (447)
T ss_dssp             SCBCCCT-TCB-CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             CcEEECc-ccc-CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhc
Confidence            9999999 687 79999999999997532        3578899999999999994

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.97  E-value=8.6e-29  Score=274.11  Aligned_cols=321  Identities=15%  Similarity=0.129  Sum_probs=213.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccc--cccCccc--------------------cCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFT--LIGGGMK--------------------KLSD   85 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~--~~~~~~~--------------------~~~~   85 (706)
                      ..++|||||||+||++||..|++..++.+|+|||+++++.|. |.+.  ...+...                    .+..
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   89 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence            457899999999999999999988678999999999876554 2111  1111000                    0000


Q ss_pred             cccccccc---cCCCcEEEEc-eeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCccccccccccccccccc
Q psy8791          86 SRRPMKSV---LPSGATWVKD-KIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFV  161 (706)
Q Consensus        86 ~~~~~~~~---~~~~v~~i~~-~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~  161 (706)
                      .......+   ...+++++.+ +|+.||++.++|.+++|.++.||+||+|||+.+..+++++..                
T Consensus        90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~----------------  153 (493)
T 1m6i_A           90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRA----------------  153 (493)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTS----------------
T ss_pred             hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccc----------------
Confidence            00011111   2357899886 999999999999999998999999999999988765544410                


Q ss_pred             ccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhH--HHHHHHH
Q psy8791         162 TFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPM--KAVLIGD  239 (706)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~--~~~~~~~  239 (706)
                                         ......    .+....+.+.+..+.+.+..  +.++++        ++|+..  |++....
T Consensus       154 -------------------~~~~~~----~v~~~~~~~d~~~l~~~~~~--~~~vvV--------iGgG~iG~E~A~~l~  200 (493)
T 1m6i_A          154 -------------------GAEVKS----RTTLFRKIGDFRSLEKISRE--VKSITI--------IGGGFLGSELACALG  200 (493)
T ss_dssp             -------------------CHHHHH----TEEECCSHHHHHHHHHHHHH--CSEEEE--------ECCSHHHHHHHHHHH
T ss_pred             -------------------cccccC----ceEEEcCHHHHHHHHHHhhc--CCeEEE--------ECCCHHHHHHHHHHH
Confidence                               000000    12222233444444333321  222222        334422  3333333


Q ss_pred             HHHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEE
Q psy8791         240 EYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMH  316 (706)
Q Consensus       240 ~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI  316 (706)
                      ...++.|    ++|+++++.+.+++   ++.+.+.+.+.++++||++++++.|.+++.+++.+.+ .+++|+++++|+||
T Consensus       201 ~~~~~~g----~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v-~l~dG~~i~aD~Vv  275 (493)
T 1m6i_A          201 RKARALG----TEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLI-KLKDGRKVETDHIV  275 (493)
T ss_dssp             HHHHHHT----CEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEE-EETTSCEEEESEEE
T ss_pred             hhhhhcC----CEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEE-EECCCCEEECCEEE
Confidence            3233334    35899988765443   5788899999999999999999999999865544433 34578899999999


Q ss_pred             ECCCCCchh-hhhcCCC-CCC-CCceeeCccccccCCCCCEEEccccCCCCCC-------chHHHHHHhHHHHHHHHHHH
Q psy8791         317 VTPPMGPVP-ELATSRL-VDQ-SGYVNVDKATLQHVKYSNVFAIGDCSNLPTS-------KTAAAVAGQCKVVYDNLSAV  386 (706)
Q Consensus       317 ~a~G~~~~~-~~~~~~l-~~~-~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~-------~~~~~a~~qg~~~a~ni~~~  386 (706)
                      +|+|.+|+. ++..+++ .++ +|+|.||+ ++| + .|||||+|||+..+.+       ..+..|..||+.+|+||.  
T Consensus       276 ~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~-~l~-t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~--  350 (493)
T 1m6i_A          276 AAVGLEPNVELAKTGGLEIDSDFGGFRVNA-ELQ-A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT--  350 (493)
T ss_dssp             ECCCEEECCTTHHHHTCCBCTTTCSEECCT-TCE-E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT--
T ss_pred             ECCCCCccHHHHHHcCCccccCCCcEEECC-Ccc-c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhc--
Confidence            999999995 6666787 454 68899999 688 4 6999999999975422       256789999999999995  


Q ss_pred             HcCCCCCCcccceeeEEEEecCCeEE
Q psy8791         387 MKNRALPHEYNGYTSCPLVTGYSKCV  412 (706)
Q Consensus       387 l~g~~~~~~~~~~~~~~~~~G~~~~~  412 (706)
                        |...++.+  ...+...+|...++
T Consensus       351 --g~~~~~~~--~~~~~s~~~~~~~~  372 (493)
T 1m6i_A          351 --GAAKPYWH--QSMFWSDLGPDVGY  372 (493)
T ss_dssp             --SCCCCCCC--CCEEEEESSTTCEE
T ss_pred             --CCCCCcCC--cCceeeeeccCcce
Confidence              55444333  33455677766555

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.96  E-value=1.2e-28  Score=258.51  Aligned_cols=294  Identities=17%  Similarity=0.173  Sum_probs=197.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC--CcccCcccccccCc-cccCcccccccccc-cCCCcEEEEcee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD--DHYYQPMFTLIGGG-MKKLSDSRRPMKSV-LPSGATWVKDKI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~--~~~~~p~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~i~~~v  105 (706)
                      +++|+|||||+||++||.+|+++  +++|+|||++.  ...+.+.....+.. ......+...+.+. ...+++++.++|
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v   92 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARY--MLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIV   92 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESCE
T ss_pred             ccCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence            57999999999999999999998  89999999981  11111111111110 01112222223232 236788888999


Q ss_pred             EEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhh
Q psy8791         106 VSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQE  183 (706)
Q Consensus       106 ~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (706)
                      ++++.+.+  .+.+.++.++.||+||+|||+.+..+.+||.+                    .|..+.            
T Consensus        93 ~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~--------------------~~~~~~------------  140 (323)
T 3f8d_A           93 EKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQ--------------------EFAGRG------------  140 (323)
T ss_dssp             EEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTT--------------------TTBTTT------------
T ss_pred             EEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchh--------------------hhcCCc------------
Confidence            99998755  57777878999999999999999888888831                    000010            


Q ss_pred             hhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCC
Q psy8791         184 ALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLF  263 (706)
Q Consensus       184 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~  263 (706)
                              +.. .  .    .. ....+.+.+++        .++++.. ... ....+.+.+.    +++++++.+.++
T Consensus       141 --------~~~-~--~----~~-~~~~~~~~~v~--------vvG~G~~-~~e-~a~~l~~~g~----~v~~~~~~~~~~  190 (323)
T 3f8d_A          141 --------ISY-C--S----VA-DAPLFKNRVVA--------VIGGGDS-ALE-GAEILSSYST----KVYLIHRRDTFK  190 (323)
T ss_dssp             --------EES-C--H----HH-HGGGGTTCEEE--------EECCSHH-HHH-HHHHHHHHSS----EEEEECSSSSCC
T ss_pred             --------eEE-e--c----cC-CHhHcCCCEEE--------EECCCHH-HHH-HHHHHHHhCC----eEEEEEeCCCCC
Confidence                    100 0  0    00 00111222222        2333322 122 2233455553    599999998887


Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeCCCce--EEeecEEEECCCCCch-hhhhcCCC-CCCCC
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSEDKTE--RLPYAIMHVTPPMGPV-PELATSRL-VDQSG  337 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g~--~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~G  337 (706)
                      +.+.   .+++.+++.||++++++.+.+++.+++.  +.+....+|+  ++++|.||+|+|++|+ +++...++ .+++|
T Consensus       191 ~~~~---~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g  267 (323)
T 3f8d_A          191 AQPI---YVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG  267 (323)
T ss_dssp             SCHH---HHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTS
T ss_pred             cCHH---HHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCC
Confidence            6433   2333444569999999999999876542  4444323355  7999999999999999 77777888 68899


Q ss_pred             ceeeCccccccCCCCCEEEccccCCCC-CCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         338 YVNVDKATLQHVKYSNVFAIGDCSNLP-TSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       338 ~i~vd~~~l~~~~~~~Ifa~GD~~~~~-~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      ++.||+ +++ |+.|||||+|||+..+ .++++..|..||+.+|.||.+.+.+++.
T Consensus       268 ~i~vd~-~~~-t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~  321 (323)
T 3f8d_A          268 YIKVDE-WMR-TSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKKG  321 (323)
T ss_dssp             SBCCCT-TCB-CSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cEecCC-Cce-ecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHhhc
Confidence            999999 787 8999999999999864 4578999999999999999999987654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.96  E-value=1e-28  Score=260.56  Aligned_cols=301  Identities=17%  Similarity=0.153  Sum_probs=204.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc-----c--ccccC-ccccCcccccccccc-cCCCcEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM-----F--TLIGG-GMKKLSDSRRPMKSV-LPSGATW  100 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~-----~--~~~~~-~~~~~~~~~~~~~~~-~~~~v~~  100 (706)
                      +++|+|||||+||+++|..|+++  +++|+|||+++.+...+.     .  ...+. .......+...+.+. ...++++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMR--GLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY   82 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            57999999999999999999998  899999999876432211     0  00000 000111111122222 2346777


Q ss_pred             EE-ceeEEEEcCCC--EEEeCCCeEEEecEEEEcccc---ccccCCCCCCcccccccccccccccccccCccCCcccccc
Q psy8791         101 VK-DKIVSFDPENN--RVRTQAGSEISYEYMIVASGI---QMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDF  174 (706)
Q Consensus       101 i~-~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (706)
                      .. .+|+.++.+..  .|.+.++.++.||+||+|||+   .+..+.+||.+                    .|..+    
T Consensus        83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~--------------------~~~~~----  138 (335)
T 2zbw_A           83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGER--------------------EFEGR----  138 (335)
T ss_dssp             EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTT--------------------TTBTT----
T ss_pred             EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChh--------------------hccCc----
Confidence            54 68999987654  466677778999999999998   46666677721                    00000    


Q ss_pred             ccCccchhhhhcCCCCCcccC-CChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEE
Q psy8791         175 LRRPSGLQEALDQPDSGVSTN-YSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKL  253 (706)
Q Consensus       175 ~~~~~~l~~~~~~~~~~v~~~-~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v  253 (706)
                                      .+... .+.          ..+.+.+++        .++|+.. ...+ ...+.+.+    .+|
T Consensus       139 ----------------~~~~~~~~~----------~~~~~~~v~--------viG~G~~-g~e~-a~~l~~~g----~~V  178 (335)
T 2zbw_A          139 ----------------GVYYAVKSK----------AEFQGKRVL--------IVGGGDS-AVDW-ALNLLDTA----RRI  178 (335)
T ss_dssp             ----------------TEESSCSCG----------GGGTTCEEE--------EECSSHH-HHHH-HHHTTTTS----SEE
T ss_pred             ----------------EEEEecCch----------hhcCCCEEE--------EECCCHH-HHHH-HHHHHhhC----CEE
Confidence                            00000 000          011222222        2334322 1222 22333333    369


Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC--EEEEEeCCCc--eEEeecEEEECCCCCch-hhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSEDKT--ERLPYAIMHVTPPMGPV-PELA  328 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~v~~~~~~~g--~~i~~D~vI~a~G~~~~-~~~~  328 (706)
                      +++++.+.+++.+...+.+++.+++.||++++++.|.+++.+++  .+.+....+|  +++++|.||+|+|++|+ +++.
T Consensus       179 ~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~  258 (335)
T 2zbw_A          179 TLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLA  258 (335)
T ss_dssp             EEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGG
T ss_pred             EEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhh
Confidence            99999988877777888899999999999999999999987644  3555433245  68999999999999999 5777


Q ss_pred             cCCCCCCCCceeeCccccccCCCCCEEEccccCCCC-CCchHHHHHHhHHHHHHHHHHHHcCCCC-CCcccc
Q psy8791         329 TSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP-TSKTAAAVAGQCKVVYDNLSAVMKNRAL-PHEYNG  398 (706)
Q Consensus       329 ~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~-~~~~~~~a~~qg~~~a~ni~~~l~g~~~-~~~~~~  398 (706)
                      +.++..++|++.||+ +++ |+.|||||+|||+..+ .++++..|..||+.+|+||...+.+.+. ++.|..
T Consensus       259 ~~~~~~~~g~i~vd~-~~~-t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~~~  328 (335)
T 2zbw_A          259 NWGLALEKNKIKVDT-TMA-TSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYANPALKVNPGHSS  328 (335)
T ss_dssp             GSCCCEETTEEECCT-TCB-CSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHHCTTSCSSCCCGG
T ss_pred             hcceeccCCeeeeCC-CCC-CCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHhhhhhccCCcccc
Confidence            778743479999999 788 8999999999999765 3578899999999999999999988765 444544

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.96  E-value=6.3e-29  Score=262.38  Aligned_cols=297  Identities=15%  Similarity=0.164  Sum_probs=195.9

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccccc--------ccCc--cccCccccccccccc-
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL--------IGGG--MKKLSDSRRPMKSVL-   94 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~--------~~~~--~~~~~~~~~~~~~~~-   94 (706)
                      ....+++|+|||||+|||+||..|+++  +++|+|||+++.+...+.-..        +++-  ......+...+.+.+ 
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLARA--EIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQST   95 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHH
Confidence            334567999999999999999999999  899999999762222221100        0000  001111222222222 


Q ss_pred             CCCcEEEEceeEEEEcCCCEEEe-----CCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCc
Q psy8791          95 PSGATWVKDKIVSFDPENNRVRT-----QAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPR  169 (706)
Q Consensus        95 ~~~v~~i~~~v~~id~~~~~v~~-----~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (706)
                      ..+++++.++|++++++.+.+.+     .++.++.||+||+|||+.+..+.+||.                         
T Consensus        96 ~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~-------------------------  150 (338)
T 3itj_A           96 KFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGE-------------------------  150 (338)
T ss_dssp             HTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTH-------------------------
T ss_pred             HcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCc-------------------------
Confidence            36899998889999998876555     466789999999999999988889982                         


Q ss_pred             cccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCC
Q psy8791         170 RTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRD  249 (706)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~  249 (706)
                                  ......   .+..   .   ......+....+.+++        .++++..  +......+.+.+   
T Consensus       151 ------------~~~~~~---~~~~---~---~~~~~~~~~~~~~~v~--------vvG~G~~--g~e~a~~l~~~g---  196 (338)
T 3itj_A          151 ------------ETYWQK---GISA---C---AVCDGAVPIFRNKPLA--------VIGGGDS--ACEEAQFLTKYG---  196 (338)
T ss_dssp             ------------HHHBTT---TEES---C---HHHHTTSGGGTTSEEE--------EECSSHH--HHHHHHHHTTTS---
T ss_pred             ------------hhccCc---cEEE---c---hhcccchhhcCCCEEE--------EECCCHH--HHHHHHHHHhcC---
Confidence                        111100   0100   0   0000000111222222        2333322  222233444444   


Q ss_pred             CcEEEEEeCCCcCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCE---EEEEeCC--CceEEeecEEEECCCCCc
Q psy8791         250 AAKLTYCTGMGVLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLANKE---AVFKSED--KTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       250 ~~~v~l~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~---v~~~~~~--~g~~i~~D~vI~a~G~~~  323 (706)
                       .+|+++++.+.+++.    ..+.+.+.+ .||++++++.+.+++.+++.   +.+....  +++++++|.||+|+|++|
T Consensus       197 -~~v~~v~~~~~~~~~----~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  271 (338)
T 3itj_A          197 -SKVFMLVRKDHLRAS----TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTP  271 (338)
T ss_dssp             -SEEEEECSSSSCCSC----HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEE
T ss_pred             -CEEEEEEcCCccCCC----HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCC
Confidence             369999999887652    344555555 49999999999999877653   4444321  256899999999999999


Q ss_pred             hhhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         324 VPELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       324 ~~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      +..+.+.++ .+++|++.|++.+++ |+.|||||+|||+..+ ++.+..|..||+.+|.||.+.+.++
T Consensus       272 ~~~~~~~~l~~~~~G~i~v~~~~~~-t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~  337 (338)
T 3itj_A          272 ATKIVAGQVDTDEAGYIKTVPGSSL-TSVPGFFAAGDVQDSK-YRQAITSAGSGCMAALDAEKYLTSL  337 (338)
T ss_dssp             CCGGGBTTBCBCTTSCBCCCTTSSB-CSSTTEEECGGGGCSS-CCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChhHhhCceEecCCCcEEEcCcccc-cCCCCEEEeeccCCCC-ccceeeehhhhHHHHHHHHHHHhcC
Confidence            966665577 688999996442565 8999999999999853 5678899999999999999999875

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.96  E-value=2.1e-28  Score=255.71  Aligned_cols=291  Identities=15%  Similarity=0.117  Sum_probs=192.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEE-EcCCCC---cccCcccccccCc--cccCccccccccccc-CCCcEE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSI-VEPTDD---HYYQPMFTLIGGG--MKKLSDSRRPMKSVL-PSGATW  100 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtl-ie~~~~---~~~~p~~~~~~~~--~~~~~~~~~~~~~~~-~~~v~~  100 (706)
                      +.+++|+|||||+|||+||..|++.  +++|+| ||+...   ..+.+.....++.  ......+...+.+.. +.++++
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   79 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH   79 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence            3467999999999999999999999  899999 999432   0111111111111  111122333333333 368999


Q ss_pred             EEceeEEEEcCC--CEEE--eCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCcccccccc
Q psy8791         101 VKDKIVSFDPEN--NRVR--TQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLR  176 (706)
Q Consensus       101 i~~~v~~id~~~--~~v~--~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (706)
                      +.++|+++ ++.  +.+.  +..+.++.||+||+|||+.+..|.+||.+                    .|..+.++.  
T Consensus        80 ~~~~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~g~~--------------------~~~~~~~~~--  136 (315)
T 3r9u_A           80 EMVGVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGED--------------------EFFGKGVST--  136 (315)
T ss_dssp             ECCCEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCBTTT--------------------TTBTTTEES--
T ss_pred             EEEEEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCCChh--------------------hcCCCeEEe--
Confidence            88999999 444  3333  43322899999999999999888888832                    011111110  


Q ss_pred             CccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEE
Q psy8791         177 RPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYC  256 (706)
Q Consensus       177 ~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~  256 (706)
                                           .....    . ....+ +.++       .+++++.  +......+.+.+    .+|+++
T Consensus       137 ---------------------~~~~~----~-~~~~~-~~v~-------viG~g~~--~~e~a~~l~~~g----~~v~~~  176 (315)
T 3r9u_A          137 ---------------------CATCD----G-FFYKN-KEVA-------VLGGGDT--ALEEALYLANIC----SKIYLI  176 (315)
T ss_dssp             ---------------------CHHHH----G-GGGTT-SEEE-------EECCBHH--HHHHHHHHHTTS----SEEEEE
T ss_pred             ---------------------eeccc----c-cccCc-CEEE-------EECCCHH--HHHHHHHHHhhC----CEEEEE
Confidence                                 00000    0 01112 2222       2333322  222233455454    359999


Q ss_pred             eCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE---EEEEeCCCce--EEeecEEEECCCCCchhhhhcC-
Q psy8791         257 TGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE---AVFKSEDKTE--RLPYAIMHVTPPMGPVPELATS-  330 (706)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~---v~~~~~~~g~--~i~~D~vI~a~G~~~~~~~~~~-  330 (706)
                      ++.+.+...+   ..+++.+++.||++++++.+.+++.+++.   +++. ..+|+  ++++|.||+|+|.+|+..+.+. 
T Consensus       177 ~~~~~~~~~~---~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~  252 (315)
T 3r9u_A          177 HRRDEFRAAP---STVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVK-LKDGSIRDLNVPGIFTFVGLNVRNEILKQD  252 (315)
T ss_dssp             CSSSSCBSCH---HHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEE-CTTSCEEEECCSCEEECSCEEECCGGGBCT
T ss_pred             EeCCCCCCCH---HHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEE-cCCCCeEEeecCeEEEEEcCCCCchhhhcc
Confidence            9988774433   34456667899999999999999876643   3333 33564  8999999999999999655443 


Q ss_pred             ----CC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         331 ----RL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       331 ----~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                          ++ .+++|++.||+ +++ |+.|||||+|||+..+ ++++..|..||+.+|.||.+.+.++
T Consensus       253 ~~~g~l~~~~~g~i~vd~-~~~-t~~~~v~a~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~  314 (315)
T 3r9u_A          253 DSKFLCNMEEGGQVSVDL-KMQ-TSVAGLFAAGDLRKDA-PKQVICAAGDGAVAALSAMAYIESL  314 (315)
T ss_dssp             TSCBSSCBCTTSCBCCCT-TCB-CSSTTEEECGGGBTTC-CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccceeeecCCCcEEeCC-Ccc-cCCCCEEEeecccCCc-hhhhhhHHhhHHHHHHHHHHHHHhc
Confidence                37 67889999999 788 7999999999999753 6788999999999999999998765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.96  E-value=1.6e-28  Score=254.30  Aligned_cols=283  Identities=17%  Similarity=0.191  Sum_probs=195.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc-ccccC-ccccCccccccccccc-CC-CcEEEEcee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF-TLIGG-GMKKLSDSRRPMKSVL-PS-GATWVKDKI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~-~~~~~-~~~~~~~~~~~~~~~~-~~-~v~~i~~~v  105 (706)
                      +++|+|||||+||++||..|++.  +++|+|||+++.....+.. ..++. .......+...+.+.+ .. +++++.++|
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v   79 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA--RKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRV   79 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEE
Confidence            36899999999999999999999  8999999998643322211 11111 1122223333333333 33 789999999


Q ss_pred             EEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhh
Q psy8791         106 VSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQE  183 (706)
Q Consensus       106 ~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (706)
                      ++++++.+  .|.+.++.++.||+||+|||+.+..|.+||.+                                     .
T Consensus        80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~-------------------------------------~  122 (297)
T 3fbs_A           80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLR-------------------------------------E  122 (297)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTG-------------------------------------G
T ss_pred             EEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCch-------------------------------------h
Confidence            99998764  67778888899999999999999888889832                                     1


Q ss_pred             hhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCC
Q psy8791         184 ALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLF  263 (706)
Q Consensus       184 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~  263 (706)
                      ....   .+...   .     +.....+.+.++++        +++++.  +......+.+.+     +|+++++.+.. 
T Consensus       123 ~~~~---~~~~~---~-----~~~~~~~~~~~v~v--------vG~G~~--~~e~a~~l~~~g-----~v~~v~~~~~~-  175 (297)
T 3fbs_A          123 RWGS---AVFHC---P-----YCHGYELDQGKIGV--------IAASPM--AIHHALMLPDWG-----ETTFFTNGIVE-  175 (297)
T ss_dssp             GBTT---TEESC---H-----HHHTGGGTTCEEEE--------ECCSTT--HHHHHHHGGGTS-----EEEEECTTTCC-
T ss_pred             hcCC---eeEEc---c-----cCcchhhcCCEEEE--------EecCcc--HHHHHHHhhhcC-----cEEEEECCCCC-
Confidence            0000   01000   0     00001122222222        223321  112222344443     59999877652 


Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CC--CCC-c
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VD--QSG-Y  338 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~--~~G-~  338 (706)
                          +.+.+.+.|++.||+++. +.|.+++.++ .+.+   ++|+++++|.||+|+|++|+ +++.+.++ .+  ++| +
T Consensus       176 ----~~~~~~~~l~~~gv~i~~-~~v~~i~~~~-~v~~---~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~  246 (297)
T 3fbs_A          176 ----PDADQHALLAARGVRVET-TRIREIAGHA-DVVL---ADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGST  246 (297)
T ss_dssp             ----CCHHHHHHHHHTTCEEEC-SCEEEEETTE-EEEE---TTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEE
T ss_pred             ----CCHHHHHHHHHCCcEEEc-ceeeeeecCC-eEEe---CCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCce
Confidence                345678889999999996 8999998764 3444   47889999999999999998 56666677 33  457 8


Q ss_pred             eeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         339 VNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       339 i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      +.||+ +++ |+.|||||+|||+..  |+++..|..||+.+|.||.+.+.+.+
T Consensus       247 i~vd~-~~~-t~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~~~l~~~~  295 (297)
T 3fbs_A          247 IVTDP-MKQ-TTARGIFACGDVARP--AGSVALAVGDGAMAGAAAHRSILFPE  295 (297)
T ss_dssp             ECCCT-TCB-CSSTTEEECSGGGCT--TCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             EEeCC-CCc-cCCCCEEEEeecCCc--hHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence            99999 677 899999999999997  56889999999999999999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.96  E-value=9.1e-29  Score=257.18  Aligned_cols=290  Identities=12%  Similarity=0.122  Sum_probs=191.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccccccCc-cccCccc-ccccccccC-CCcEEEEc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFTLIGGG-MKKLSDS-RRPMKSVLP-SGATWVKD  103 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~~~~~-~~~~~~~-~~~~~~~~~-~~v~~i~~  103 (706)
                      ...+||+|||||+||++||.+|+|+  +++|+|||++...... ...+.+... ...+..+ .....++.+ ..+.+...
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRA--RKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK   81 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee
Confidence            4457999999999999999999998  8999999997531110 001111100 0111111 111233334 35677777


Q ss_pred             eeEEEEcCC---CEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccc
Q psy8791         104 KIVSFDPEN---NRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSG  180 (706)
Q Consensus       104 ~v~~id~~~---~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (706)
                      ++..++...   .++.+.+|+++.||+||||||+.+..|++||.                                    
T Consensus        82 ~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~------------------------------------  125 (304)
T 4fk1_A           82 TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNV------------------------------------  125 (304)
T ss_dssp             CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTH------------------------------------
T ss_pred             EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCc------------------------------------
Confidence            777766433   36888889999999999999999999999992                                    


Q ss_pred             hhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCC
Q psy8791         181 LQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG  260 (706)
Q Consensus       181 l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~  260 (706)
                       ......   .+..   .....    . ..+.+.+.        +.++|++.. +..+...+++.+.    +++++++.+
T Consensus       126 -~~~~~~---~v~~---~~~~~----~-~~~~~~~~--------~VIggG~~~-~~e~a~~~~~~~~----~v~i~~~~~  180 (304)
T 4fk1_A          126 -REYYGK---SLFS---CPYCD----G-WELKDQPL--------IIISENEDH-TLHMTKLVYNWST----DLVIATNGN  180 (304)
T ss_dssp             -HHHBTT---TEES---CHHHH----S-GGGTTSCE--------EEECCSHHH-HHHHHHHHTTTCS----CEEEECSSC
T ss_pred             -cccccc---eeee---ccccc----h-hHhcCCce--------eeecCCCch-hhhHHHHHHhCCc----eEEEEeccc
Confidence             211110   1111   00000    0 01222222        223444322 2233344554443    378887765


Q ss_pred             cCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCCCc
Q psy8791         261 VLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQSGY  338 (706)
Q Consensus       261 ~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~G~  338 (706)
                      .+      ...+.+.|++.|++++.+. +..+..+++.+..+.+++|+++++|.+|+++|..|+ +++.+.++ ++++|+
T Consensus       181 ~~------~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~  253 (304)
T 4fk1_A          181 EL------SQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGT  253 (304)
T ss_dssp             CC------CHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSS
T ss_pred             cc------hhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCC
Confidence            43      3456778899999999874 778877665555455668999999988888766555 77888888 789999


Q ss_pred             eeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         339 VNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       339 i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      |.||+ ++| |+.|||||+|||+..+ ++++..|..||+.||.+|.++|.++
T Consensus       254 I~vd~-~~~-Ts~p~IyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~~~L~~e  302 (304)
T 4fk1_A          254 FVIDD-FGR-TSEKNIYLAGETTTQG-PSSLIIAASQGNKAAIAINSDITDE  302 (304)
T ss_dssp             SCSST-TCB-CSSTTEEECSHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECc-CCc-cCCCCEEEEeccCCCc-chHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999 687 9999999999999754 3567789999999999999988643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.96  E-value=8.1e-28  Score=252.57  Aligned_cols=290  Identities=17%  Similarity=0.147  Sum_probs=192.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc----cccccCc--cccCccccccccccc-CCCcEEEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM----FTLIGGG--MKKLSDSRRPMKSVL-PSGATWVK  102 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~----~~~~~~~--~~~~~~~~~~~~~~~-~~~v~~i~  102 (706)
                      +++|+|||||+||++||..|++.  +++|+|||++.. .....    ....++.  ......+...+.+.. +.+++++.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~   84 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRA--QLSTLILEKGMP-GGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM   84 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-TGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHc--CCcEEEEeCCCC-CcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            57999999999999999999998  899999999832 11100    0001100  001111222222222 36889988


Q ss_pred             ceeEEEEcC--C---CEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccC
Q psy8791         103 DKIVSFDPE--N---NRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRR  177 (706)
Q Consensus       103 ~~v~~id~~--~---~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (706)
                      ++|++++.+  .   ..|.+.+|.++.||+||+|||+.+..+.+||.+  +                  |..+       
T Consensus        85 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~--~------------------~~~~-------  137 (325)
T 2q7v_A           85 DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGED--N------------------FWGK-------  137 (325)
T ss_dssp             CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTT--T------------------TBTT-------
T ss_pred             eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChh--h------------------ccCc-------
Confidence            999999876  4   367777888899999999999998888888831  0                  0000       


Q ss_pred             ccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEe
Q psy8791         178 PSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCT  257 (706)
Q Consensus       178 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~  257 (706)
                                   .+.. +  ....    . ....+.+++        .++++..  +......+.+.+    .+|++++
T Consensus       138 -------------~~~~-~--~~~~----~-~~~~~~~v~--------VvG~G~~--g~e~A~~l~~~g----~~Vtlv~  182 (325)
T 2q7v_A          138 -------------GVST-C--ATCD----G-FFYKGKKVV--------VIGGGDA--AVEEGMFLTKFA----DEVTVIH  182 (325)
T ss_dssp             -------------TEES-C--HHHH----G-GGGTTCEEE--------EECCSHH--HHHHHHHHTTTC----SEEEEEC
T ss_pred             -------------eEEE-e--ccCC----H-HHcCCCEEE--------EECCCHH--HHHHHHHHHhcC----CEEEEEe
Confidence                         0100 0  0000    0 011222222        2333322  222223454444    3699999


Q ss_pred             CCCcCCCchhHHHHHHHHHH-hCCceEEcCCceEEEeCCCC--EEEEEeCCCce--EEeecEEEECCCCCch-hhhhcCC
Q psy8791         258 GMGVLFPSPFYAEKIHDILI-GRGVDVHKGKALVEIDLANK--EAVFKSEDKTE--RLPYAIMHVTPPMGPV-PELATSR  331 (706)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~--~v~~~~~~~g~--~i~~D~vI~a~G~~~~-~~~~~~~  331 (706)
                      +.+.+...+.    +.+.+. +.||++++++++.++..+++  .+.+....+|+  ++++|.||+|+|++|+ +++... 
T Consensus       183 ~~~~~~~~~~----~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-  257 (325)
T 2q7v_A          183 RRDTLRANKV----AQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-  257 (325)
T ss_dssp             SSSSCCSCHH----HHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-
T ss_pred             CCCcCCcchH----HHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-
Confidence            8887654332    333444 47999999999999987643  34554323454  7999999999999999 555555 


Q ss_pred             C-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         332 L-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       332 l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      + .+++|++.||+ +++ |+.|||||+|||+..+ ++++..|..||+.+|.||.+.+.++++
T Consensus       258 ~~~~~~g~i~vd~-~~~-t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~~  316 (325)
T 2q7v_A          258 VSLRDDGYVDVRD-EIY-TNIPMLFAAGDVSDYI-YRQLATSVGAGTRAAMMTERQLAALEV  316 (325)
T ss_dssp             SCBCTTSCBCCBT-TTB-CSSTTEEECSTTTCSS-CCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cccCCCccEecCC-CCc-cCCCCEEEeecccCcc-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5 57789999999 687 8999999999999864 568899999999999999999988754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.96  E-value=7.5e-28  Score=252.15  Aligned_cols=290  Identities=18%  Similarity=0.161  Sum_probs=192.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC---cccccccC-ccccCccccccccc-ccCCCcEEEEc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ---PMFTLIGG-GMKKLSDSRRPMKS-VLPSGATWVKD  103 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~---p~~~~~~~-~~~~~~~~~~~~~~-~~~~~v~~i~~  103 (706)
                      ..++|+|||||+||++||..|++.  +++|+|||+.......   +.....++ .......+...+.+ +.+.+++++.+
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   92 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARS--GFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV   92 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence            357999999999999999999998  8999999995421100   00001111 00011111111222 22367888888


Q ss_pred             eeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccch
Q psy8791         104 KIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGL  181 (706)
Q Consensus       104 ~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (706)
                      +|++++.+.+  .|.+ ++.++.||+||+|+|+.+..+.+||.+  +                  +..+           
T Consensus        93 ~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~--~------------------~~~~-----------  140 (319)
T 3cty_A           93 EVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGES--E------------------YFGK-----------  140 (319)
T ss_dssp             CEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTT--T------------------TBTT-----------
T ss_pred             eEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChH--H------------------hCCc-----------
Confidence            9999987666  4555 556899999999999998888888721  0                  0000           


Q ss_pred             hhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc
Q psy8791         182 QEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV  261 (706)
Q Consensus       182 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~  261 (706)
                               .+..   .....    . ....+.+++        .++|++.  +......+.+.+    .+|+++++.+.
T Consensus       141 ---------~~~~---~~~~~----~-~~~~~~~v~--------viG~G~~--g~e~a~~l~~~g----~~V~~i~~~~~  189 (319)
T 3cty_A          141 ---------GTSY---CSTCD----G-YLFKGKRVV--------TIGGGNS--GAIAAISMSEYV----KNVTIIEYMPK  189 (319)
T ss_dssp             ---------TEES---CHHHH----G-GGGBTSEEE--------EECCSHH--HHHHHHHHTTTB----SEEEEECSSSS
T ss_pred             ---------eEEE---EEecc----h-hhcCCCeEE--------EECCCHH--HHHHHHHHHhhC----CcEEEEEcCCc
Confidence                     0100   00000    0 011222222        2333322  122223344444    36999998877


Q ss_pred             CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC---EEEEEeCCCce--EEeecEEEECCCCCch-hhhhcCCC-CC
Q psy8791         262 LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK---EAVFKSEDKTE--RLPYAIMHVTPPMGPV-PELATSRL-VD  334 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~---~v~~~~~~~g~--~i~~D~vI~a~G~~~~-~~~~~~~l-~~  334 (706)
                      +...+    .+.+.+++.||++++++++.++..+++   .+.+....+|+  ++++|.||+|+|++|+ +++.+.++ .+
T Consensus       190 ~~~~~----~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~  265 (319)
T 3cty_A          190 YMCEN----AYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLD  265 (319)
T ss_dssp             CCSCH----HHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBC
T ss_pred             cCCCH----HHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcccccc
Confidence            65433    345566789999999999999987654   34444323454  7999999999999999 56666777 67


Q ss_pred             CCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         335 QSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       335 ~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      ++|++.||+ +++ |+.|||||+|||+..+ ++++..|..||+.+|.||.+.+.|+
T Consensus       266 ~~g~i~vd~-~~~-t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~  318 (319)
T 3cty_A          266 ERGYIVVDS-RQR-TSVPGVYAAGDVTSGN-FAQIASAVGDGCKAALSLYSDSISK  318 (319)
T ss_dssp             TTSCBCCCT-TCB-CSSTTEEECSTTBTTC-CCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCccEeCCC-CCc-cCCCCEEEeecccCcc-hhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            889999999 677 8999999999999864 4678899999999999999999875

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.96  E-value=2.6e-28  Score=255.64  Aligned_cols=295  Identities=18%  Similarity=0.196  Sum_probs=198.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc---cCcccccccCc--cccCccccccccccc-CCCcEEEEc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY---YQPMFTLIGGG--MKKLSDSRRPMKSVL-PSGATWVKD  103 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~---~~p~~~~~~~~--~~~~~~~~~~~~~~~-~~~v~~i~~  103 (706)
                      .++|+|||||+||++||..|++.  +++|+|||+.....   +.......+..  ......+...+.... ..+++++.+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD   82 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--TCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence            46899999999999999999998  89999999753210   00000000000  001111111122222 368899888


Q ss_pred             eeEEEEcCCCEEE-eCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchh
Q psy8791         104 KIVSFDPENNRVR-TQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQ  182 (706)
Q Consensus       104 ~v~~id~~~~~v~-~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (706)
                      +|+.++.+.+.+. +.++.++.||+||+|||+.+..+.+||.                                     .
T Consensus        83 ~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~-------------------------------------~  125 (320)
T 1trb_A           83 HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSE-------------------------------------E  125 (320)
T ss_dssp             CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHH-------------------------------------H
T ss_pred             eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCCh-------------------------------------H
Confidence            8999998776544 5667789999999999999888878772                                     1


Q ss_pred             hhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcC
Q psy8791         183 EALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVL  262 (706)
Q Consensus       183 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~  262 (706)
                      .... .  .+....   ...   ..   ...++.+       +.++++..  +......+.+.+    .+|+++++.+.+
T Consensus       126 ~~~~-~--~~~~~~---~~~---~~---~~~~~~v-------~ViG~G~~--g~e~A~~l~~~g----~~Vtlv~~~~~~  180 (320)
T 1trb_A          126 AFKG-R--GVSACA---TSD---GF---FYRNQKV-------AVIGGGNT--AVEEALYLSNIA----SEVHLIHRRDGF  180 (320)
T ss_dssp             HTBT-T--TEESCH---HHH---GG---GGTTSEE-------EEECSSHH--HHHHHHHHTTTS----SEEEEECSSSSC
T ss_pred             HhCC-c--eeEecc---cCC---cc---ccCCCeE-------EEECCCHH--HHHHHHHHHhcC----CeEEEEEeCCcc
Confidence            1000 0  111100   000   00   1112222       22344432  222223344444    369999998887


Q ss_pred             CCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE---EEEEeC---CCceEEeecEEEECCCCCchhhhhcCCC-CCC
Q psy8791         263 FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE---AVFKSE---DKTERLPYAIMHVTPPMGPVPELATSRL-VDQ  335 (706)
Q Consensus       263 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~---v~~~~~---~~g~~i~~D~vI~a~G~~~~~~~~~~~l-~~~  335 (706)
                      ...+.+.+.+.+.+++.||+++++++|.+++.+++.   +.+...   .+++++++|.||+|+|++|+..+.+.++ .+ 
T Consensus       181 ~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~-  259 (320)
T 1trb_A          181 RAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELE-  259 (320)
T ss_dssp             CCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEE-
T ss_pred             ccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhccccccc-
Confidence            767788888999999999999999999999876533   444321   1236899999999999999965555566 56 


Q ss_pred             CCceeeCcccc----ccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         336 SGYVNVDKATL----QHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       336 ~G~i~vd~~~l----~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      +|++.||+ ++    +.|+.|||||+|||+..+ ++.+..|..||+.+|.||.+.+.+++
T Consensus       260 ~G~i~vd~-~~~~~~~~t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~  317 (320)
T 1trb_A          260 NGYIKVQS-GIHGNATQTSIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAERYLDGLA  317 (320)
T ss_dssp             TTEECCCC-SSSSCTTBCSSTTEEECGGGGCSS-SCCHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             CceEEECC-CcccccccCCCCCEEEcccccCCc-chhhhhhhccHHHHHHHHHHHHHhcc
Confidence            89999999 55    468999999999999875 46788999999999999999998764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.96  E-value=1.5e-27  Score=266.42  Aligned_cols=284  Identities=17%  Similarity=0.167  Sum_probs=199.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccccc-----------------cCcccc-
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTLI-----------------GGGMKK-   82 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~~-----------------~~~~~~-   82 (706)
                      ..++||||||||+||++||.+|++.  +++|+|||+++.....       |.....                 ...... 
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~  118 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEK  118 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhh
Confidence            4457999999999999999999998  8999999999842211       110000                 000000 


Q ss_pred             ---Ccccccc----cc---cc------cCCCcEEE-EceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCc
Q psy8791          83 ---LSDSRRP----MK---SV------LPSGATWV-KDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPS  145 (706)
Q Consensus        83 ---~~~~~~~----~~---~~------~~~~v~~i-~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~  145 (706)
                         .+.+...    +.   .+      ...+++++ .++++.+++  ++|.+. +.++.||+||+|||+.+..|++||.+
T Consensus       119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~  195 (523)
T 1mo9_A          119 VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVN  195 (523)
T ss_dssp             CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCCSTTTT
T ss_pred             hhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCCCCCcc
Confidence               0111111    11   22      34689998 889999986  567776 67899999999999999988888831


Q ss_pred             ccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCe
Q psy8791         146 ALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPI  225 (706)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v  225 (706)
                                                           .    .  .+   ++.+.+   .+.+....+.++        +
T Consensus       196 -------------------------------------~----~--~v---~~~~~~---~~~l~~~~g~~v--------v  218 (523)
T 1mo9_A          196 -------------------------------------A----K--GV---FDHATL---VEELDYEPGSTV--------V  218 (523)
T ss_dssp             -------------------------------------S----B--TE---EEHHHH---HHHCCSCCCSEE--------E
T ss_pred             -------------------------------------c----C--cE---eeHHHH---HHHHHhcCCCeE--------E
Confidence                                                 0    0  01   111111   111222221222        2


Q ss_pred             eeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CE---E
Q psy8791         226 KCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KE---A  299 (706)
Q Consensus       226 ~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~---v  299 (706)
                      .++|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||+++++++|.+++.++ +.   +
T Consensus       219 ViGgG~~--g~E~A~~l~~~G~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~  292 (523)
T 1mo9_A          219 VVGGSKT--AVEYGCFFNATGR----RTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAV  292 (523)
T ss_dssp             EECCSHH--HHHHHHHHHHTTC----EEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEE
T ss_pred             EECCCHH--HHHHHHHHHHcCC----eEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEE
Confidence            2334322  2233345666664    5999999998887  78899999999999999999999999998643 32   3


Q ss_pred             EEEeCCCce-EEeecEEEECCCCCchh--hhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHh
Q psy8791         300 VFKSEDKTE-RLPYAIMHVTPPMGPVP--ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQ  375 (706)
Q Consensus       300 ~~~~~~~g~-~i~~D~vI~a~G~~~~~--~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~q  375 (706)
                      .+ .+++|+ ++++|.||+|+|.+|+.  .+.+.++ .+++|+|.||+ ++| |+.|+|||+|||+..+  +++..|..|
T Consensus       293 ~v-~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~-~~~-t~~~~IyA~GD~~~~~--~~~~~A~~~  367 (523)
T 1mo9_A          293 VA-MTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNE-YLQ-TSVPNVYAVGDLIGGP--MEMFKARKS  367 (523)
T ss_dssp             EE-EETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCT-TSB-CSSTTEEECGGGGCSS--CSHHHHHHH
T ss_pred             EE-EECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECC-CCc-cCCCCEEEEeecCCCc--ccHHHHHHH
Confidence            33 345777 89999999999999996  5777788 67889999999 688 7999999999999864  578899999


Q ss_pred             HHHHHHHHH
Q psy8791         376 CKVVYDNLS  384 (706)
Q Consensus       376 g~~~a~ni~  384 (706)
                      |+++|+||.
T Consensus       368 g~~aa~~i~  376 (523)
T 1mo9_A          368 GCYAARNVM  376 (523)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999999995

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.96  E-value=1.3e-27  Score=249.41  Aligned_cols=288  Identities=16%  Similarity=0.154  Sum_probs=192.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCCccc---CcccccccC--ccccCcccccccccc-cCCCcEEEEc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYY---QPMFTLIGG--GMKKLSDSRRPMKSV-LPSGATWVKD  103 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~~~~---~p~~~~~~~--~~~~~~~~~~~~~~~-~~~~v~~i~~  103 (706)
                      ++|+|||||+||++||..|++.  ++ +|+|||++.....   .+.....++  .......+...+.+. .+.+++++.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~--g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   79 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG--GVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMT   79 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECS
T ss_pred             ceEEEECccHHHHHHHHHHHHC--CCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            6899999999999999999998  88 9999999642110   000001110  001111122222222 2368898889


Q ss_pred             eeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccch
Q psy8791         104 KIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGL  181 (706)
Q Consensus       104 ~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (706)
                      +|++++.+.+  .+.+.+|.++.||+||+|||+.+..|.+||.                                     
T Consensus        80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~-------------------------------------  122 (311)
T 2q0l_A           80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGE-------------------------------------  122 (311)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTH-------------------------------------
T ss_pred             EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCCh-------------------------------------
Confidence            9999998777  6767788889999999999999888888882                                     


Q ss_pred             hhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc
Q psy8791         182 QEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV  261 (706)
Q Consensus       182 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~  261 (706)
                      ......   .+...   ....    .. ...+.+++        .++++..  +......+.+.+    .+|+++++.+.
T Consensus       123 ~~~~~~---~~~~~---~~~~----~~-~~~~~~v~--------VvG~G~~--g~e~A~~l~~~g----~~Vtlv~~~~~  177 (311)
T 2q0l_A          123 SEYWGK---GVSTC---ATCD----GF-FYKNKEVA--------VLGGGDT--AVEEAIYLANIC----KKVYLIHRRDG  177 (311)
T ss_dssp             HHHBTT---TEESC---HHHH----GG-GGTTSEEE--------EECCSHH--HHHHHHHHHTTS----SEEEEECSSSS
T ss_pred             hhccCC---cEEEe---ecCC----hh-hcCCCEEE--------EECCCHH--HHHHHHHHHhcC----CEEEEEeeCCc
Confidence            111100   11110   0000    00 11222222        2333322  222223455555    35999998887


Q ss_pred             CCCchhHHHHHHHHHH-hCCceEEcCCceEEEeCCCCE---EEEEeCCCce--EEeecEEEECCCCCch-hhhhcCC---
Q psy8791         262 LFPSPFYAEKIHDILI-GRGVDVHKGKALVEIDLANKE---AVFKSEDKTE--RLPYAIMHVTPPMGPV-PELATSR---  331 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~~---v~~~~~~~g~--~i~~D~vI~a~G~~~~-~~~~~~~---  331 (706)
                      +...+.    +.+.+. +.||++++++.+.+++.+++.   +.+....+|+  ++++|.||+|+|++|+ +++...+   
T Consensus       178 ~~~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~  253 (311)
T 2q0l_A          178 FRCAPI----TLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSM  253 (311)
T ss_dssp             CCSCHH----HHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCB
T ss_pred             cCCCHH----HHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccc
Confidence            653333    444554 479999999999999875333   4444323454  7999999999999999 5666664   


Q ss_pred             -C-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         332 -L-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       332 -l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                       + .+++|++.||+ +++ |+.|||||+|||+..+ ++++..|..||+.+|.||.+.+.+
T Consensus       254 ~l~~~~~g~i~vd~-~~~-t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~  310 (311)
T 2q0l_A          254 LCKCDEYGSIVVDF-SMK-TNVQGLFAAGDIRIFA-PKQVVCAASDGATAALSVISYLEH  310 (311)
T ss_dssp             SSCBCTTSCBCCCT-TCB-CSSTTEEECSTTBTTC-CCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeEeccCCCEEeCC-ccc-cCCCCeEEcccccCcc-hHHHHHHHHhHHHHHHHHHHHHhh
Confidence             6 67789999999 688 8999999999999863 568899999999999999998865

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.96  E-value=6.8e-28  Score=265.97  Aligned_cols=295  Identities=15%  Similarity=0.139  Sum_probs=200.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccccc--------------cCcc-------c
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTLI--------------GGGM-------K   81 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~~--------------~~~~-------~   81 (706)
                      ++||+|||||+||++||.+|++.  +++|+|||+++.....       |.....              ..+.       .
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL--GMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM   79 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence            47999999999999999999998  8999999999754221       110000              0000       0


Q ss_pred             cCcccc-----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCCccc
Q psy8791          82 KLSDSR-----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGPSAL  147 (706)
Q Consensus        82 ~~~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~~~~  147 (706)
                      +...+.           ..+..++ ..+++++.+++..+++....|.+.+|  .++.||+||+|||+.+..|+++|.+  
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~--  157 (468)
T 2qae_A           80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFD--  157 (468)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCC--
Confidence            000000           0011222 25899999888888876556666677  7899999999999999888888721  


Q ss_pred             ccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeee
Q psy8791         148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKC  227 (706)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~  227 (706)
                                                         .    .  .+   ++.+.+..    +... ..+        .+.+
T Consensus       158 -----------------------------------~----~--~v---~t~~~~~~----~~~~-~~~--------vvVi  180 (468)
T 2qae_A          158 -----------------------------------E----K--VV---LSSTGALA----LPRV-PKT--------MVVI  180 (468)
T ss_dssp             -----------------------------------S----S--SE---ECHHHHHT----CSSC-CSE--------EEEE
T ss_pred             -----------------------------------c----C--ce---echHHHhh----cccC-Cce--------EEEE
Confidence                                               0    0  01   11111110    0011 111        1223


Q ss_pred             CChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHH-HhCCceEEcCCceEEEeCCCCEEEEEeC
Q psy8791         228 GGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDIL-IGRGVDVHKGKALVEIDLANKEAVFKSE  304 (706)
Q Consensus       228 ~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l-~~~gV~v~~~~~v~~i~~~~~~v~~~~~  304 (706)
                      +|+..  +......+.+.|.    +|+++++.+.+++  ++++.+.+.+.| ++.||+++++++|.+++.+++.+.+...
T Consensus       181 GgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~  254 (468)
T 2qae_A          181 GGGVI--GLELGSVWARLGA----EVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVE  254 (468)
T ss_dssp             CCSHH--HHHHHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEE
T ss_pred             CCCHH--HHHHHHHHHHhCC----EEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEE
Confidence            44422  2223345666664    5999999998886  688899999999 9999999999999999876543333221


Q ss_pred             -CCc--eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHH
Q psy8791         305 -DKT--ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK  377 (706)
Q Consensus       305 -~~g--~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~  377 (706)
                       .+|  +++++|.||+|+|.+|+..   +.+.++ .+++|+|.||+ ++| |+.|||||+|||+.. .++++..|..||+
T Consensus       255 ~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~-~~~~~~~A~~~g~  331 (468)
T 2qae_A          255 GKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGD-HFE-TSIPDVYAIGDVVDK-GPMLAHKAEDEGV  331 (468)
T ss_dssp             CC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCT-TSB-CSSTTEEECGGGBSS-SCSCHHHHHHHHH
T ss_pred             cCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECC-Ccc-cCCCCEEEeeccCCC-CCccHhHHHHHHH
Confidence             145  6899999999999999954   456677 67789999999 688 899999999999983 2458889999999


Q ss_pred             HHHHHHHHHHcCCCCCCcccc
Q psy8791         378 VVYDNLSAVMKNRALPHEYNG  398 (706)
Q Consensus       378 ~~a~ni~~~l~g~~~~~~~~~  398 (706)
                      .+|+||.    |++.++.|..
T Consensus       332 ~aa~~i~----~~~~~~~~~~  348 (468)
T 2qae_A          332 ACAEILA----GKPGHVNYGV  348 (468)
T ss_dssp             HHHHHHT----TCCCCCCTTS
T ss_pred             HHHHHHc----CCCccCCCCC
Confidence            9999995    4443444443

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.96  E-value=7.7e-28  Score=265.99  Aligned_cols=297  Identities=14%  Similarity=0.141  Sum_probs=203.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc--------------cc-cCcc------c
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT--------------LI-GGGM------K   81 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~--------------~~-~~~~------~   81 (706)
                      ++||+|||||+||++||.+|++.  +++|+|||+++.....       |...              .. ..+.      .
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~   83 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQL--GFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRL   83 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCcc
Confidence            47999999999999999999998  8999999999753211       1000              00 0000      0


Q ss_pred             cCcccc-----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCC-C-eEEEecEEEEccccccccCCCCCCccc
Q psy8791          82 KLSDSR-----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQA-G-SEISYEYMIVASGIQMYYDRVKGPSAL  147 (706)
Q Consensus        82 ~~~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~-g-~~~~yd~lviAtG~~~~~~~~~g~~~~  147 (706)
                      +...+.           ..+...+ ..+++++.+++..+|+....|.+.+ + .++.||+||+|||+.+..|+++|.+  
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~--  161 (474)
T 1zmd_A           84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITID--  161 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCC--
Confidence            000000           0011222 3689999998888886555666666 4 5799999999999999888888831  


Q ss_pred             ccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeee
Q psy8791         148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKC  227 (706)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~  227 (706)
                      +                     .                    .+   ++.+.+..    +... ..++        +.+
T Consensus       162 ~---------------------~--------------------~v---~t~~~~~~----~~~~-~~~v--------vVi  184 (474)
T 1zmd_A          162 E---------------------D--------------------TI---VSSTGALS----LKKV-PEKM--------VVI  184 (474)
T ss_dssp             S---------------------S--------------------SE---ECHHHHTT----CSSC-CSEE--------EEE
T ss_pred             c---------------------C--------------------cE---EcHHHHhh----cccc-CceE--------EEE
Confidence            0                     0                    00   11111100    0011 1111        223


Q ss_pred             CChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEEEe
Q psy8791         228 GGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVFKS  303 (706)
Q Consensus       228 ~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~~~  303 (706)
                      +|+..  +......+.+.|.    +|+++++.+.+++   ++++.+.+++.|++.||+++++++|.+++.+++. +.+..
T Consensus       185 GgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~  258 (474)
T 1zmd_A          185 GAGVI--GVELGSVWQRLGA----DVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSI  258 (474)
T ss_dssp             CCSHH--HHHHHHHHHHTTC----EEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEE
T ss_pred             CCCHH--HHHHHHHHHHcCC----EEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEE
Confidence            44432  2223345666664    5999999998876   6889999999999999999999999999876543 43321


Q ss_pred             ----CCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHh
Q psy8791         304 ----EDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQ  375 (706)
Q Consensus       304 ----~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~q  375 (706)
                          .++++++++|.||+|+|.+|+..   +.+.++ .+++|+|.||+ ++| |+.|+|||+|||+..  ++++..|..|
T Consensus       259 ~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~--~~~~~~A~~~  334 (474)
T 1zmd_A          259 EAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNT-RFQ-TKIPNIYAIGDVVAG--PMLAHKAEDE  334 (474)
T ss_dssp             EETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCT-TCB-CSSTTEEECGGGSSS--CCCHHHHHHH
T ss_pred             EecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECc-CCc-cCCCCEEEeeecCCC--CccHHHHHHH
Confidence                34678899999999999999953   566677 67789999999 688 899999999999986  4578899999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcccceee
Q psy8791         376 CKVVYDNLSAVMKNRALPHEYNGYTS  401 (706)
Q Consensus       376 g~~~a~ni~~~l~g~~~~~~~~~~~~  401 (706)
                      |+++|+||.    |++.++.|.....
T Consensus       335 g~~aa~~i~----~~~~~~~~~~~p~  356 (474)
T 1zmd_A          335 GIICVEGMA----GGAVHIDYNCVPS  356 (474)
T ss_dssp             HHHHHHHHT----TCCCCCCGGGCCE
T ss_pred             HHHHHHHhc----CCCCcCCCCCCCE
Confidence            999999995    4443444544333

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.96  E-value=2e-28  Score=269.90  Aligned_cols=282  Identities=18%  Similarity=0.193  Sum_probs=196.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c---------------ccc--CccccCcccc-
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T---------------LIG--GGMKKLSDSR-   87 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~---------------~~~--~~~~~~~~~~-   87 (706)
                      ++||+|||||+||++||..|++.  +.+|+|||+++.....+..    |               ...  ....+...+. 
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~--G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKA--KYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD   81 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence            47999999999999999999998  8999999987753322110    0               000  0000000000 


Q ss_pred             -----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCCCeE--EEecEEEEccccccccCCCCCCccccccccc
Q psy8791          88 -----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSE--ISYEYMIVASGIQMYYDRVKGPSALINALGH  153 (706)
Q Consensus        88 -----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~~--~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~  153 (706)
                                 ..+..++ ..+++++.+++..+|++...|.+.+|++  +.||+||+|||+.+..|++||.+   +    
T Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~---~----  154 (466)
T 3l8k_A           82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE---Y----  154 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG---G----
T ss_pred             HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc---c----
Confidence                       1122233 3689999999999998877788888878  99999999999999999999921   0    


Q ss_pred             ccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHH
Q psy8791         154 CDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMK  233 (706)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~  233 (706)
                                                               +++.+.+....+.+...  ++.       .+.++|+.. 
T Consensus       155 -----------------------------------------~~t~~~~~~~~~~l~~~--~~~-------vvViGgG~~-  183 (466)
T 3l8k_A          155 -----------------------------------------CLTSDDIFGYKTSFRKL--PQD-------MVIIGAGYI-  183 (466)
T ss_dssp             -----------------------------------------SBCHHHHHSTTCSCCSC--CSE-------EEEECCSHH-
T ss_pred             -----------------------------------------eEeHHHHHHHHHHHhhC--CCe-------EEEECCCHH-
Confidence                                                     01111111000000011  111       122344432 


Q ss_pred             HHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEEEEEeCC-Cce
Q psy8791         234 AVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEAVFKSED-KTE  308 (706)
Q Consensus       234 ~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v~~~~~~-~g~  308 (706)
                       +......+.+.|.    +|+++++.+++++   ++.+.+.+++.++   |+++++++|.+++.++ +.+.+...+ +|+
T Consensus       184 -g~e~A~~l~~~g~----~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~  255 (466)
T 3l8k_A          184 -GLEIASIFRLMGV----QTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGS  255 (466)
T ss_dssp             -HHHHHHHHHHTTC----EEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSC
T ss_pred             -HHHHHHHHHHcCC----EEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCc
Confidence             2233345666664    5999999998875   5677777777776   9999999999998754 455443332 455


Q ss_pred             --EEeecEEEECCCCCchhh--hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         309 --RLPYAIMHVTPPMGPVPE--LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       309 --~i~~D~vI~a~G~~~~~~--~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                        ++++|.||+|+|.+|+..  +.+.++ .+++| |.||+ ++| |+.|||||+|||+..  ++++..|..||+++|+||
T Consensus       256 ~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~-~~~-t~~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i  330 (466)
T 3l8k_A          256 KKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDE-TMK-TNIPNVFATGDANGL--APYYHAAVRMSIAAANNI  330 (466)
T ss_dssp             CEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCT-TCB-CSSTTEEECGGGTCS--CCSHHHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECC-Ccc-CCCCCEEEEEecCCC--CccHhHHHHHHHHHHHHH
Confidence              899999999999999965  567788 78889 99998 788 799999999999987  568899999999999999


Q ss_pred             H
Q psy8791         384 S  384 (706)
Q Consensus       384 ~  384 (706)
                      .
T Consensus       331 ~  331 (466)
T 3l8k_A          331 M  331 (466)
T ss_dssp             H
T ss_pred             h
Confidence            6

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.96  E-value=5.4e-27  Score=258.71  Aligned_cols=282  Identities=17%  Similarity=0.217  Sum_probs=198.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC----------------------cccccc---cCc--cc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ----------------------PMFTLI---GGG--MK   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~----------------------p~~~~~---~~~--~~   81 (706)
                      .++||+|||||+||++||.+|++.  +++|+|||+++. ...                      +..++.   ...  ..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~-GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQ--GAQVTLIERGTI-GGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI   79 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSST-THHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCC-CccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence            357999999999999999999998  899999999842 100                      001111   000  00


Q ss_pred             cCccccc------------cccccc-CC-CcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCCc
Q psy8791          82 KLSDSRR------------PMKSVL-PS-GATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGPS  145 (706)
Q Consensus        82 ~~~~~~~------------~~~~~~-~~-~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~~  145 (706)
                      ....+..            .+.+++ .. +++++.+++..+++....|.+.+|  .++.||+||+|||+.+..|++||.+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~  159 (467)
T 1zk7_A           80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK  159 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTT
T ss_pred             CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCC
Confidence            0000000            012222 34 899999999999977666777777  6899999999999999989899831


Q ss_pred             ccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCe
Q psy8791         146 ALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPI  225 (706)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v  225 (706)
                                                           ..      .   .++.+.+..    +...  ++.+       +
T Consensus       160 -------------------------------------~~------~---~~~~~~~~~----~~~~--~~~v-------v  180 (467)
T 1zk7_A          160 -------------------------------------ES------P---YWTSTEALA----SDTI--PERL-------A  180 (467)
T ss_dssp             -------------------------------------TS------C---CBCHHHHHH----CSSC--CSEE-------E
T ss_pred             -------------------------------------cC------c---eecHHHHhc----cccc--CCEE-------E
Confidence                                                 00      0   112211111    1111  1111       2


Q ss_pred             eeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC
Q psy8791         226 KCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE  304 (706)
Q Consensus       226 ~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~  304 (706)
                      .++|+..  +......+.+.|.    +|+++++.+.+++ ++.+.+.+.+.+++.||+++++++|.+++.+++.+.+. +
T Consensus       181 ViGgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~-~  253 (467)
T 1zk7_A          181 VIGSSVV--ALELAQAFARLGS----KVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLT-T  253 (467)
T ss_dssp             EECCSHH--HHHHHHHHHHTTC----EEEEECSSCTTTTSCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEE-E
T ss_pred             EECCCHH--HHHHHHHHHHcCC----EEEEEEECCccCCCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEE-E
Confidence            2344432  2223344666664    5999999998886 78899999999999999999999999998665543332 3


Q ss_pred             CCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHH
Q psy8791         305 DKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY  380 (706)
Q Consensus       305 ~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a  380 (706)
                       ++.++++|.||+|+|.+|+..   +.+.++ .+++|+|.||+ +++ |+.|+|||+|||+..+  ..+..|..||+.+|
T Consensus       254 -~~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~-t~~~~iya~GD~~~~~--~~~~~A~~~g~~aa  328 (467)
T 1zk7_A          254 -THGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQ-GMR-TSNPNIYAAGDCTDQP--QFVYVAAAAGTRAA  328 (467)
T ss_dssp             -TTEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCT-TCB-CSSTTEEECSTTBSSC--CCHHHHHHHHHHHH
T ss_pred             -CCcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECC-Ccc-cCCCCEEEEeccCCCc--ccHHHHHHHHHHHH
Confidence             356899999999999999943   456677 67789999999 687 8999999999999864  47889999999999


Q ss_pred             HHHH
Q psy8791         381 DNLS  384 (706)
Q Consensus       381 ~ni~  384 (706)
                      .||.
T Consensus       329 ~~i~  332 (467)
T 1zk7_A          329 INMT  332 (467)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9995

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.96  E-value=8.7e-28  Score=252.92  Aligned_cols=291  Identities=16%  Similarity=0.128  Sum_probs=199.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-----cccc--cccCc-cccCcccccccccccC-CCcEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-----PMFT--LIGGG-MKKLSDSRRPMKSVLP-SGATW  100 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-----p~~~--~~~~~-~~~~~~~~~~~~~~~~-~~v~~  100 (706)
                      .++|+|||||+||++||..|++.  +++|+|||+++.....     |...  ..++. ......+...+.+... .++++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR--QASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTI   84 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence            46999999999999999999998  8999999999853311     1110  01100 0011222233333333 57888


Q ss_pred             EE-ceeEEEEcCCC---EEEeCCCeEEEecEEEEcccc---ccccCCCCCCcccccccccccccccccccCccCCccccc
Q psy8791         101 VK-DKIVSFDPENN---RVRTQAGSEISYEYMIVASGI---QMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLD  173 (706)
Q Consensus       101 i~-~~v~~id~~~~---~v~~~~g~~~~yd~lviAtG~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (706)
                      .. .+|++++.+.+   .|.+.+++ +.||+||+|||+   .+..+.+||.+                    .|..+.++
T Consensus        85 ~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~--------------------~~~g~~~~  143 (332)
T 3lzw_A           85 CLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAE--------------------QYEGKNLH  143 (332)
T ss_dssp             ECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGG--------------------GGBTTTEE
T ss_pred             EccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChh--------------------hccCceEE
Confidence            75 89999998876   77888775 999999999999   78888888832                    00111100


Q ss_pred             cccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEE
Q psy8791         174 FLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKL  253 (706)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v  253 (706)
                      .                   ...+.          ..+.+.+++        .++++..  +......+.+.+    .+|
T Consensus       144 ~-------------------~~~~~----------~~~~~~~v~--------vvG~g~~--~~e~a~~l~~~~----~~v  180 (332)
T 3lzw_A          144 Y-------------------FVDDL----------QKFAGRRVA--------ILGGGDS--AVDWALMLEPIA----KEV  180 (332)
T ss_dssp             S-------------------SCSCG----------GGGBTCEEE--------EECSSHH--HHHHHHHHTTTB----SEE
T ss_pred             E-------------------ecCCH----------HHcCCCEEE--------EECCCHh--HHHHHHHHHhhC----CeE
Confidence            0                   00000          011222222        2333322  222223344443    369


Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC--EEEEEeCC--CceEEeecEEEECCCCCch-hhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSED--KTERLPYAIMHVTPPMGPV-PELA  328 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~v~~~~~~--~g~~i~~D~vI~a~G~~~~-~~~~  328 (706)
                      +++++.+.+.+.+.    ..+.|++.||++++++.+.+++.+++  .+++....  +++++++|.||+|+|++|+ +++.
T Consensus       181 ~~~~~~~~~~~~~~----~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~  256 (332)
T 3lzw_A          181 SIIHRRDKFRAHEH----SVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIK  256 (332)
T ss_dssp             EEECSSSSCSSCHH----HHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGG
T ss_pred             EEEEecCcCCccHH----HHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHh
Confidence            99999888765322    23457889999999999999987654  35554322  2568999999999999998 6677


Q ss_pred             cCCCCCCCCceeeCccccccCCCCCEEEccccCCCC-CCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         329 TSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP-TSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       329 ~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~-~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      .+++..++|++.||+ +++ |+.|||||+|||+..+ .++++..|..||+.+|.||.+.+.++..
T Consensus       257 ~~~~~~~~g~i~vd~-~~~-t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~  319 (332)
T 3lzw_A          257 NWGLDIEKNSIVVKS-TME-TNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPKAR  319 (332)
T ss_dssp             GSSCCEETTEEECCT-TSB-CSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             hcCccccCCeEEeCC-CCc-eecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhChhhc
Confidence            778844789999999 788 7999999999999764 4778999999999999999999988754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.96  E-value=1.6e-27  Score=264.02  Aligned_cols=279  Identities=15%  Similarity=0.188  Sum_probs=192.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-hcCCCeEEEEcC--------CCCcccCccc----cc---------------c-cCcc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTS-KLGKGQVSIVEP--------TDDHYYQPMF----TL---------------I-GGGM   80 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~-~~~~~~Vtlie~--------~~~~~~~p~~----~~---------------~-~~~~   80 (706)
                      ++||+|||||+||++||.+|++ .  +++|+|||+        .+.....+..    |.               . ..+.
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~--G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~   84 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLY--GKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGW   84 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhc--CCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCc
Confidence            5799999999999999999999 8  899999992        2221111000    00               0 0000


Q ss_pred             --------ccCccccc-----------ccccc-cCC-CcEEEEceeEEEEcCCCEEEeC---C-----CeEEEecEEEEc
Q psy8791          81 --------KKLSDSRR-----------PMKSV-LPS-GATWVKDKIVSFDPENNRVRTQ---A-----GSEISYEYMIVA  131 (706)
Q Consensus        81 --------~~~~~~~~-----------~~~~~-~~~-~v~~i~~~v~~id~~~~~v~~~---~-----g~~~~yd~lviA  131 (706)
                              .+...+..           .+... ... +++++.++++.++.  ++|.++   +     ++++.||+||+|
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViA  162 (495)
T 2wpf_A           85 EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESK--NVVVVRETADPKSAVKERLQADHILLA  162 (495)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEe
Confidence                    00000000           01111 235 89999999988874  567775   4     678999999999


Q ss_pred             cccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhc
Q psy8791         132 SGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF  211 (706)
Q Consensus       132 tG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  211 (706)
                      ||+.+..|++||.+   +...                            ..+.+..                     ...
T Consensus       163 TGs~p~~p~i~G~~---~~~~----------------------------~~~~~~~---------------------~~~  190 (495)
T 2wpf_A          163 TGSWPQMPAIPGIE---HCIS----------------------------SNEAFYL---------------------PEP  190 (495)
T ss_dssp             CCEEECCCCCTTGG---GCEE----------------------------HHHHTTC---------------------SSC
T ss_pred             CCCCcCCCCCCCcc---cccc----------------------------HHHHHhh---------------------hhc
Confidence            99999988899821   0000                            1111110                     011


Q ss_pred             cCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHc---CCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcC
Q psy8791         212 QSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKH---KKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKG  286 (706)
Q Consensus       212 ~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~---g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~  286 (706)
                       ..++        +.++|+.. ..++ ...+.+.   |    .+|+++++.+.+++  ++++.+.+.+.|++.||+++++
T Consensus       191 -~~~v--------vViGgG~i-g~E~-A~~l~~~~~~g----~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~  255 (495)
T 2wpf_A          191 -PRRV--------LTVGGGFI-SVEF-AGIFNAYKPPG----GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTN  255 (495)
T ss_dssp             -CSEE--------EEECSSHH-HHHH-HHHHHHHCCTT----CEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             -CCeE--------EEECCCHH-HHHH-HHHHHhhCCCC----CeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeC
Confidence             1111        22344422 1222 2344555   4    36999999998886  6889999999999999999999


Q ss_pred             CceEEEeCCCC-EEEEEeCCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccC
Q psy8791         287 KALVEIDLANK-EAVFKSEDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCS  361 (706)
Q Consensus       287 ~~v~~i~~~~~-~v~~~~~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~  361 (706)
                      ++|.+++.+++ .+.+ .+++|+++++|.||+|+|.+|+..   +.++++ .+++|+|.||+ ++| |+.|||||+|||+
T Consensus       256 ~~v~~i~~~~~~~~~v-~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~-~~~-t~~~~IyA~GD~~  332 (495)
T 2wpf_A          256 ENPAKVSLNTDGSKHV-TFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDE-FSR-TNVPNIYAIGDIT  332 (495)
T ss_dssp             CCEEEEEECTTSCEEE-EETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCT-TCB-CSSTTEEECGGGG
T ss_pred             CEEEEEEEcCCceEEE-EECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECC-CCc-cCCCCEEEEeccC
Confidence            99999986542 2333 334788999999999999999953   466788 67789999999 688 8999999999999


Q ss_pred             CCCCCchHHHHHHhHHHHHHHHH
Q psy8791         362 NLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       362 ~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      ..  ++++..|..||+++|+||.
T Consensus       333 ~~--~~l~~~A~~~g~~aa~~i~  353 (495)
T 2wpf_A          333 DR--LMLTPVAINEGAALVDTVF  353 (495)
T ss_dssp             CS--CCCHHHHHHHHHHHHHHHH
T ss_pred             CC--ccCHHHHHHHHHHHHHHhc
Confidence            75  4588899999999999995

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.95  E-value=3.1e-27  Score=259.00  Aligned_cols=277  Identities=13%  Similarity=0.181  Sum_probs=194.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc---------cc--cC---cc------cc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT---------LI--GG---GM------KK   82 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~---------~~--~~---~~------~~   82 (706)
                      ++||+|||||+||++||.+|++.  +.+|+|||+++. ...       |...         .+  ..   +.      .+
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   80 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMY--GQKCALIEAKEL-GGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN   80 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEcCCCC-CCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            57999999999999999999998  899999999853 111       1000         00  00   00      00


Q ss_pred             Ccccc-----------ccccc-ccCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccc
Q psy8791          83 LSDSR-----------RPMKS-VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINA  150 (706)
Q Consensus        83 ~~~~~-----------~~~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~  150 (706)
                      ...+.           ..+.. +...+++++.++++.+++  ++|.+ +|.++.||+||+|||+.+..|++||.+   +.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~---~~  154 (450)
T 1ges_A           81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV-NGETITADHILIATGGRPSHPDIPGVE---YG  154 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCCSTTGG---GS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE-CCEEEEeCEEEECCCCCCCCCCCCCcc---ce
Confidence            00000           00111 123689999999888875  56777 677899999999999999988888821   00


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                                                   .+.+.+..    +...  ++.+       +.++|+
T Consensus       155 ---------------------------------------------~~~~~~~~----~~~~--~~~v-------vViGgG  176 (450)
T 1ges_A          155 ---------------------------------------------IDSDGFFA----LPAL--PERV-------AVVGAG  176 (450)
T ss_dssp             ---------------------------------------------BCHHHHHH----CSSC--CSEE-------EEECCS
T ss_pred             ---------------------------------------------ecHHHhhh----hhhc--CCeE-------EEECCC
Confidence                                                         11111111    1111  1111       223444


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEEEeCCCc
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVFKSEDKT  307 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~~~~~~g  307 (706)
                      ..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||+++++++|.+++.+++. +.+ .+++|
T Consensus       177 ~~--g~e~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v-~~~~g  249 (450)
T 1ges_A          177 YI--GVELGGVINGLGA----KTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDG  249 (450)
T ss_dssp             HH--HHHHHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEE-EETTS
T ss_pred             HH--HHHHHHHHHhcCC----EEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEE-EECCC
Confidence            22  2233345666664    5999999988876  6788999999999999999999999999865322 333 23478


Q ss_pred             eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         308 ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       308 ~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      +++++|.||+|+|.+|+..   +.+.++ .+++|+|.||+ ++| |+.|||||+|||+..  ++++..|..||+.+|+||
T Consensus       250 ~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~~~-t~~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i  325 (450)
T 1ges_A          250 RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDK-YQN-TNIEGIYAVGDNTGA--VELTPVAVAAGRRLSERL  325 (450)
T ss_dssp             CEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCT-TSB-CSSTTEEECSGGGTS--CCCHHHHHHHHHHHHHHH
T ss_pred             cEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECC-CCc-cCCCCEEEEeccCCC--CccHHHHHHHHHHHHHHH
Confidence            8999999999999999953   456688 67799999999 687 899999999999875  457889999999999999


Q ss_pred             H
Q psy8791         384 S  384 (706)
Q Consensus       384 ~  384 (706)
                      .
T Consensus       326 ~  326 (450)
T 1ges_A          326 F  326 (450)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.95  E-value=2e-27  Score=253.39  Aligned_cols=296  Identities=15%  Similarity=0.107  Sum_probs=198.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-----ccc--ccccCc-cccCcccccccccc-cCCCcE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-----PMF--TLIGGG-MKKLSDSRRPMKSV-LPSGAT   99 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-----p~~--~~~~~~-~~~~~~~~~~~~~~-~~~~v~   99 (706)
                      ..+||+|||||+||++||..|++.  +++|+|||+++.....     |..  ...++. ......+...+.+. ...+++
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   90 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMN--NISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPD   90 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCE
Confidence            357999999999999999999998  8999999998764221     110  000000 00111111122222 235777


Q ss_pred             EEE-ceeEEEEcCCC---EEEeCCCeEEEecEEEEccccc---cccCCCCC-CcccccccccccccccccccCccCCccc
Q psy8791         100 WVK-DKIVSFDPENN---RVRTQAGSEISYEYMIVASGIQ---MYYDRVKG-PSALINALGHCDLVRSFVTFPLFFPRRT  171 (706)
Q Consensus       100 ~i~-~~v~~id~~~~---~v~~~~g~~~~yd~lviAtG~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (706)
                      +.. .+|+.++.+.+   .|.+.+|.++.||+||+|||+.   +..+.+|| .+  +                  +..+ 
T Consensus        91 ~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~--~------------------~~~~-  149 (360)
T 3ab1_A           91 VVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNID--H------------------LTGS-  149 (360)
T ss_dssp             EECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCT--T------------------TBTT-
T ss_pred             EEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchh--h------------------CcCc-
Confidence            765 58999997654   6777888889999999999984   44444454 21  0                  0000 


Q ss_pred             cccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCc
Q psy8791         172 LDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAA  251 (706)
Q Consensus       172 ~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~  251 (706)
                                         .+...+.  .       +..+.+.++++        ++|+..  +......+.+.+    .
T Consensus       150 -------------------~v~~~~~--~-------~~~~~~~~vvV--------vG~G~~--g~e~A~~l~~~g----~  187 (360)
T 3ab1_A          150 -------------------SVYYAVK--S-------VEDFKGKRVVI--------VGGGDS--ALDWTVGLIKNA----A  187 (360)
T ss_dssp             -------------------TEESSCS--C-------GGGGTTCEEEE--------ECSSHH--HHHHHHHTTTTS----S
T ss_pred             -------------------eEEEecC--C-------HHHcCCCcEEE--------ECCCHH--HHHHHHHHHhcC----C
Confidence                               0100000  0       00112222222        333321  122222344343    3


Q ss_pred             EEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE---EEEEeCCCc--eEEeecEEEECCCCCch-h
Q psy8791         252 KLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE---AVFKSEDKT--ERLPYAIMHVTPPMGPV-P  325 (706)
Q Consensus       252 ~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~---v~~~~~~~g--~~i~~D~vI~a~G~~~~-~  325 (706)
                      +|+++++.+.+.+.+.+.+.+.+.+++.||+++++++|.+++.+++.   +.+. ..+|  +++++|.||+|+|++|+ +
T Consensus       188 ~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~-~~~g~~~~i~~D~vi~a~G~~p~~~  266 (360)
T 3ab1_A          188 SVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLR-SSDGSKWTVEADRLLILIGFKSNLG  266 (360)
T ss_dssp             EEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEE-ETTCCEEEEECSEEEECCCBCCSCG
T ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEE-ecCCCeEEEeCCEEEECCCCCCCHH
Confidence            69999999888776677788888899999999999999999876443   3333 2255  68999999999999999 5


Q ss_pred             hhhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCC-CCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         326 ELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP-TSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       326 ~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~-~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      ++...++..++|++.||+ +++ |+.|+|||+|||+..+ .++++..|..||+++|+||...+.+.+.
T Consensus       267 ~l~~~~~~~~~g~i~vd~-~~~-t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~  332 (360)
T 3ab1_A          267 PLARWDLELYENALVVDS-HMK-TSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIKPGEK  332 (360)
T ss_dssp             GGGGSSCCEETTEEECCT-TSB-CSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHhhccccccCeeeecC-CCc-CCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhcCCccc
Confidence            777777733379999999 788 7999999999999865 3678899999999999999999988765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.95  E-value=3.8e-27  Score=259.02  Aligned_cols=293  Identities=19%  Similarity=0.192  Sum_probs=200.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------ccccc------------cc-Ccc------ccC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTL------------IG-GGM------KKL   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~------------~~-~~~------~~~   83 (706)
                      ++||+|||||+||++||.+|++.  +++|+|||++.. ...       |....            .. .+.      .+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~-gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   79 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKGNL-GGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF   79 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCC-CCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            47999999999999999999998  899999999832 111       10000            00 000      000


Q ss_pred             cccc-----------cccccc-cCCCcEEEEceeEEEEcCCCEEEeCCC-eEEEecEEEEccccccccCCCCCCcccccc
Q psy8791          84 SDSR-----------RPMKSV-LPSGATWVKDKIVSFDPENNRVRTQAG-SEISYEYMIVASGIQMYYDRVKGPSALINA  150 (706)
Q Consensus        84 ~~~~-----------~~~~~~-~~~~v~~i~~~v~~id~~~~~v~~~~g-~~~~yd~lviAtG~~~~~~~~~g~~~~~~~  150 (706)
                      ..+.           ..+... ...+++++.+++..++++...|.+.+| .++.||+||+|||+.+..|+++|.+     
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~-----  154 (455)
T 1ebd_A           80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFS-----  154 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCcc-----
Confidence            0000           001122 236899999888778765556666667 6799999999999999888877721     


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                                      .       .   +++...+..    +..  .++.+       +.++|+
T Consensus       155 --------------------------------~-------~---v~~~~~~~~----~~~--~~~~v-------vViGgG  179 (455)
T 1ebd_A          155 --------------------------------N-------R---ILDSTGALN----LGE--VPKSL-------VVIGGG  179 (455)
T ss_dssp             --------------------------------S-------S---EECHHHHHT----CSS--CCSEE-------EEECCS
T ss_pred             --------------------------------c-------e---EecHHHHhc----ccc--CCCeE-------EEECCC
Confidence                                            0       0   011111110    001  11111       223444


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE--eCCC
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK--SEDK  306 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~--~~~~  306 (706)
                      +.  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||+++++++|.+++.+++.+.+.  ..++
T Consensus       180 ~~--g~e~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~  253 (455)
T 1ebd_A          180 YI--GIELGTAYANFGT----KVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGE  253 (455)
T ss_dssp             HH--HHHHHHHHHHTTC----EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTE
T ss_pred             HH--HHHHHHHHHHcCC----cEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCc
Confidence            32  2233345666664    5999999988876  68889999999999999999999999998655444332  2225


Q ss_pred             ceEEeecEEEECCCCCchh-h--hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         307 TERLPYAIMHVTPPMGPVP-E--LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       307 g~~i~~D~vI~a~G~~~~~-~--~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                      ++++++|.||+|+|.+|+. +  +.+.++ .+++|+|.||+ ++| |+.|+|||+|||+..  ++++..|..||+.+|+|
T Consensus       254 ~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~-t~~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~  329 (455)
T 1ebd_A          254 TKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQ-QCR-TSVPNIFAIGDIVPG--PALAHKASYEGKVAAEA  329 (455)
T ss_dssp             EEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCT-TCB-CSSTTEEECGGGSSS--CCCHHHHHHHHHHHHHH
T ss_pred             eeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCC-Ccc-cCCCCEEEEeccCCC--cccHHHHHHHHHHHHHH
Confidence            6789999999999999995 4  456677 67789999999 688 899999999999986  45788999999999999


Q ss_pred             HHHHHcCCCCCCcccce
Q psy8791         383 LSAVMKNRALPHEYNGY  399 (706)
Q Consensus       383 i~~~l~g~~~~~~~~~~  399 (706)
                      |.    |++.++.|...
T Consensus       330 i~----~~~~~~~~~~~  342 (455)
T 1ebd_A          330 IA----GHPSAVDYVAI  342 (455)
T ss_dssp             HT----SCCCCCCCSCC
T ss_pred             Hc----CCCccCCCCCC
Confidence            95    44444445443

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=9.4e-28  Score=265.28  Aligned_cols=281  Identities=13%  Similarity=0.126  Sum_probs=195.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cc--c-------ccc---c-Ccc--------
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PM--F-------TLI---G-GGM--------   80 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~--~-------~~~---~-~~~--------   80 (706)
                      .++||+|||||+||++||.+|++.  +.+|+|||+++. ...       |.  +       ..+   . .+.        
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~--g~~V~liE~~~~-GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   86 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY--GAKTLLVEAKAL-GGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK   86 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--SCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC--CCcEEEEeCCCc-CCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence            357999999999999999999998  899999999852 111       10  0       000   0 000        


Q ss_pred             ----ccCcccc-----------ccccc-ccCCCcEEEEceeEEEEcCCCEEEeCCCe--EEEecEEEEccccccccC-CC
Q psy8791          81 ----KKLSDSR-----------RPMKS-VLPSGATWVKDKIVSFDPENNRVRTQAGS--EISYEYMIVASGIQMYYD-RV  141 (706)
Q Consensus        81 ----~~~~~~~-----------~~~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g~--~~~yd~lviAtG~~~~~~-~~  141 (706)
                          .+...+.           ..+.. +...+++++.++++.+++....+.+.+|+  ++.||+||+|||+.+..| ++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i  166 (479)
T 2hqm_A           87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENI  166 (479)
T ss_dssp             GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTS
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCC
Confidence                0000000           00111 12368999999888887665556666776  799999999999999888 88


Q ss_pred             CCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecC
Q psy8791         142 KGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFP  221 (706)
Q Consensus       142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~  221 (706)
                      ||.+   +.                                             .+.+.+..    +... ..++     
T Consensus       167 ~g~~---~~---------------------------------------------~~~~~~~~----l~~~-~~~v-----  188 (479)
T 2hqm_A          167 PGFE---LG---------------------------------------------TDSDGFFR----LEEQ-PKKV-----  188 (479)
T ss_dssp             TTGG---GS---------------------------------------------BCHHHHHH----CSSC-CSEE-----
T ss_pred             CCcc---cc---------------------------------------------cchHHHhc----cccc-CCeE-----
Confidence            8821   00                                             11111111    1111 1111     


Q ss_pred             CCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-
Q psy8791         222 ATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-  298 (706)
Q Consensus       222 ~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-  298 (706)
                         +.++|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||+++++++|.+++.+++. 
T Consensus       189 ---vViGgG~i--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~  259 (479)
T 2hqm_A          189 ---VVVGAGYI--GIELAGVFHGLGS----ETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETD  259 (479)
T ss_dssp             ---EEECSSHH--HHHHHHHHHHTTC----EEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CC
T ss_pred             ---EEECCCHH--HHHHHHHHHHcCC----ceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCc
Confidence               22344422  2233345666663    5999999998876  6889999999999999999999999999865322 


Q ss_pred             -EEEEeCCCc-eEEeecEEEECCCCCchhh--hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHH
Q psy8791         299 -AVFKSEDKT-ERLPYAIMHVTPPMGPVPE--LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA  373 (706)
Q Consensus       299 -v~~~~~~~g-~~i~~D~vI~a~G~~~~~~--~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~  373 (706)
                       +.+ .+++| +++++|.||+|+|.+|+..  +...++ .+++|+|.||+ +++ |+.|||||+|||+..  +.++..|.
T Consensus       260 ~~~v-~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~--~~~~~~A~  334 (479)
T 2hqm_A          260 KLKI-HMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADE-YQN-TNVPNIYSLGDVVGK--VELTPVAI  334 (479)
T ss_dssp             CEEE-EETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCT-TCB-CSSTTEEECGGGTTS--SCCHHHHH
T ss_pred             EEEE-EECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECC-CCc-cCCCCEEEEEecCCC--cccHHHHH
Confidence             333 33477 7899999999999999964  456788 67889999999 687 899999999999865  45788999


Q ss_pred             HhHHHHHHHHH
Q psy8791         374 GQCKVVYDNLS  384 (706)
Q Consensus       374 ~qg~~~a~ni~  384 (706)
                      .||+++|+||.
T Consensus       335 ~~g~~aa~~i~  345 (479)
T 2hqm_A          335 AAGRKLSNRLF  345 (479)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999996

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.95  E-value=2.7e-27  Score=261.50  Aligned_cols=297  Identities=16%  Similarity=0.166  Sum_probs=201.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----cc----------------c-cCcc------
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----TL----------------I-GGGM------   80 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~~----------------~-~~~~------   80 (706)
                      +.++||+|||||+||++||.+|++.  +++|+|||+++.....+..    |.                . ..+.      
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~   81 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE   81 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence            3468999999999999999999999  8999999999754222100    00                0 0000      


Q ss_pred             ccCcccc-----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCCcc
Q psy8791          81 KKLSDSR-----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGPSA  146 (706)
Q Consensus        81 ~~~~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~~~  146 (706)
                      .+...+.           ..+...+ ..+++++.+++..++.+...|.+.+|  .++.||+||+|||+.+..|+++|.+ 
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~-  160 (470)
T 1dxl_A           82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTID-  160 (470)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCC-
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCC-
Confidence            0000000           0011122 25799999888777765445555566  6899999999999999888888731 


Q ss_pred             cccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhcc-CCCEEEecCCCCe
Q psy8791         147 LINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQ-SGPVLYTFPATPI  225 (706)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~g~~vv~~~~~~v  225 (706)
                                                          .    .  .+   ++...+.       ... .++.+       +
T Consensus       161 ------------------------------------~----~--~v---~~~~~~~-------~~~~~~~~v-------v  181 (470)
T 1dxl_A          161 ------------------------------------E----K--KI---VSSTGAL-------ALSEIPKKL-------V  181 (470)
T ss_dssp             ------------------------------------S----S--SE---ECHHHHT-------TCSSCCSEE-------E
T ss_pred             ------------------------------------c----c--cE---EeHHHhh-------hhhhcCCeE-------E
Confidence                                                0    0  00   0111100       110 11111       2


Q ss_pred             eeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE--E
Q psy8791         226 KCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV--F  301 (706)
Q Consensus       226 ~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~--~  301 (706)
                      .++|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+++.|++.||+++++++|.+++.+++.+.  +
T Consensus       182 ViGgG~~--g~e~A~~l~~~g~----~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~  255 (470)
T 1dxl_A          182 VIGAGYI--GLEMGSVWGRIGS----EVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTV  255 (470)
T ss_dssp             ESCCSHH--HHHHHHHHHHHTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEE
T ss_pred             EECCCHH--HHHHHHHHHHcCC----cEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEE
Confidence            2344432  2223344566664    5999999998886  688999999999999999999999999987654333  3


Q ss_pred             EeC--CCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHh
Q psy8791         302 KSE--DKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQ  375 (706)
Q Consensus       302 ~~~--~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~q  375 (706)
                      ...  .+++++++|.||+|+|.+|+..   +.+.++ .+++|+|.||+ ++| |+.|+|||+|||+..  ++++..|..|
T Consensus       256 ~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~-~~~-t~~~~Iya~GD~~~~--~~~~~~A~~~  331 (470)
T 1dxl_A          256 EPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNE-RFS-TNVSGVYAIGDVIPG--PMLAHKAEED  331 (470)
T ss_dssp             EESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCT-TCB-CSSTTEEECSTTSSS--CCCHHHHHHH
T ss_pred             EecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECc-CCc-cCCCCEEEEeccCCC--CccHHHHHHH
Confidence            221  1247899999999999999954   456777 67789999999 688 899999999999986  4578899999


Q ss_pred             HHHHHHHHHHHHcCCCCCCccccee
Q psy8791         376 CKVVYDNLSAVMKNRALPHEYNGYT  400 (706)
Q Consensus       376 g~~~a~ni~~~l~g~~~~~~~~~~~  400 (706)
                      |+++|+||.    |++.++.|....
T Consensus       332 g~~aa~~i~----g~~~~~~~~~~p  352 (470)
T 1dxl_A          332 GVACVEYLA----GKVGHVDYDKVP  352 (470)
T ss_dssp             HHHHHHHHT----TSCCCCCTTSCC
T ss_pred             HHHHHHHHc----CCCcCCCCCCCC
Confidence            999999995    444344454433

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.95  E-value=4.5e-27  Score=260.30  Aligned_cols=282  Identities=13%  Similarity=0.166  Sum_probs=192.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-hcCCCeEEEEcC--------CCCcccCccc----cc---------------cc-Ccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTS-KLGKGQVSIVEP--------TDDHYYQPMF----TL---------------IG-GGM   80 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~-~~~~~~Vtlie~--------~~~~~~~p~~----~~---------------~~-~~~   80 (706)
                      ++||+|||||+||++||.+|++ .  |++|+|||+        .+.....+..    |.               .. .+.
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~--G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~   80 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLH--KKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW   80 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHc--CCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence            5799999999999999999999 8  899999992        2222111100    00               00 000


Q ss_pred             --------ccCcccc-----------ccccc-ccCC-CcEEEEceeEEEEcCCCEEEeC-----CC---eEEEecEEEEc
Q psy8791          81 --------KKLSDSR-----------RPMKS-VLPS-GATWVKDKIVSFDPENNRVRTQ-----AG---SEISYEYMIVA  131 (706)
Q Consensus        81 --------~~~~~~~-----------~~~~~-~~~~-~v~~i~~~v~~id~~~~~v~~~-----~g---~~~~yd~lviA  131 (706)
                              .+...+.           ..+.. +... +++++.++++.+++  +++.+.     +|   .++.||+||+|
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~lviA  158 (490)
T 1fec_A           81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDN--HTVLVRESADPNSAVLETLDTEYILLA  158 (490)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeC--CEEEEEeeccCCCCceEEEEcCEEEEe
Confidence                    0000000           01111 1235 89999999998886  456663     56   68999999999


Q ss_pred             cccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhc
Q psy8791         132 SGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF  211 (706)
Q Consensus       132 tG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  211 (706)
                      ||+.+..|++||.+   +.                                             .+.+.+..    +...
T Consensus       159 tGs~p~~p~i~g~~---~~---------------------------------------------~~~~~~~~----~~~~  186 (490)
T 1fec_A          159 TGSWPQHLGIEGDD---LC---------------------------------------------ITSNEAFY----LDEA  186 (490)
T ss_dssp             CCEEECCCCSBTGG---GC---------------------------------------------BCHHHHTT----CSSC
T ss_pred             CCCCCCCCCCCCcc---ce---------------------------------------------ecHHHHhh----hhhc
Confidence            99999888888821   00                                             01111000    0001


Q ss_pred             cCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCce
Q psy8791         212 QSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKAL  289 (706)
Q Consensus       212 ~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v  289 (706)
                       ..++        +.++|+..  +......+.+.. ....+|+++++.+.+++  ++++.+.+.+.|++.||+++++++|
T Consensus       187 -~~~v--------vViGgG~i--g~E~A~~l~~~~-~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v  254 (490)
T 1fec_A          187 -PKRA--------LCVGGGYI--SIEFAGIFNAYK-ARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENP  254 (490)
T ss_dssp             -CSEE--------EEECSSHH--HHHHHHHHHHHS-CTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCE
T ss_pred             -CCeE--------EEECCCHH--HHHHHHHHHhhc-cCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence             1111        22344322  222223455551 01236999999998887  6889999999999999999999999


Q ss_pred             EEEeCCCC-EEEEEeCCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCC
Q psy8791         290 VEIDLANK-EAVFKSEDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP  364 (706)
Q Consensus       290 ~~i~~~~~-~v~~~~~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~  364 (706)
                      .+++.+++ .+.+ .+++|+++++|.||+|+|.+|+..   +.+.|+ .+++|+|.||+ ++| |+.|+|||+|||+.. 
T Consensus       255 ~~i~~~~~~~~~v-~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~-~~~-t~~~~IyA~GD~~~~-  330 (490)
T 1fec_A          255 AKVTKNADGTRHV-VFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDA-YSK-TNVDNIYAIGDVTDR-  330 (490)
T ss_dssp             EEEEECTTSCEEE-EETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCT-TCB-CSSTTEEECGGGGCS-
T ss_pred             EEEEEcCCCEEEE-EECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECC-CCc-cCCCCEEEEeccCCC-
Confidence            99986542 2333 334778999999999999999953   566788 67799999999 688 899999999999975 


Q ss_pred             CCchHHHHHHhHHHHHHHHH
Q psy8791         365 TSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       365 ~~~~~~~a~~qg~~~a~ni~  384 (706)
                       ++++..|..||+++|+||.
T Consensus       331 -~~l~~~A~~~g~~aa~~i~  349 (490)
T 1fec_A          331 -VMLTPVAINEGAAFVDTVF  349 (490)
T ss_dssp             -CCCHHHHHHHHHHHHHHHH
T ss_pred             -ccCHHHHHHHHHHHHHHhc
Confidence             4688999999999999995

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.95  E-value=3.3e-27  Score=262.47  Aligned_cols=284  Identities=16%  Similarity=0.190  Sum_probs=197.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcC-CCeEEEEcCCCCcccC-------cccc------------cc-cCcc--------
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLG-KGQVSIVEPTDDHYYQ-------PMFT------------LI-GGGM--------   80 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~-~~~Vtlie~~~~~~~~-------p~~~------------~~-~~~~--------   80 (706)
                      ++||||||||+||++||.+|++..+ +++|+|||+++ ....       |...            .. ..+.        
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK   80 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            3689999999999999999999865 78999999987 2111       1000            00 0000        


Q ss_pred             ccCcccc-----------ccccccc-CCCcEEEEceeEEEEcC----CC--EEEeCCCe--EEEecEEEEccccccccCC
Q psy8791          81 KKLSDSR-----------RPMKSVL-PSGATWVKDKIVSFDPE----NN--RVRTQAGS--EISYEYMIVASGIQMYYDR  140 (706)
Q Consensus        81 ~~~~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~----~~--~v~~~~g~--~~~yd~lviAtG~~~~~~~  140 (706)
                      .+...+.           ..+.+++ ..+++++.++++.++++    .+  .|.+++|.  ++.||+||+|||+.+..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~  160 (499)
T 1xdi_A           81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  160 (499)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence            0011110           0012222 36899999998888872    23  45556665  7999999999999998888


Q ss_pred             CCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEec
Q psy8791         141 VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTF  220 (706)
Q Consensus       141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~  220 (706)
                      +||.+  +               ...+.            ..+.+..                     ... ..++    
T Consensus       161 i~g~~--~---------------~~v~~------------~~~~~~~---------------------~~~-~~~v----  185 (499)
T 1xdi_A          161 SAQPD--G---------------ERILT------------WRQLYDL---------------------DAL-PDHL----  185 (499)
T ss_dssp             GGCCC--S---------------SSEEE------------GGGGGGC---------------------SSC-CSSE----
T ss_pred             CCCCC--c---------------CcEEe------------hhHhhhh---------------------hcc-CCeE----
Confidence            88832  0               00000            0111100                     001 1112    


Q ss_pred             CCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE
Q psy8791         221 PATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE  298 (706)
Q Consensus       221 ~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~  298 (706)
                          +.++|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.+++.||+++++++|++++.+++.
T Consensus       186 ----vViGgG~i--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~  255 (499)
T 1xdi_A          186 ----IVVGSGVT--GAEFVDAYTELGV----PVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAG  255 (499)
T ss_dssp             ----EEESCSHH--HHHHHHHHHHTTC----CEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSS
T ss_pred             ----EEECCCHH--HHHHHHHHHHcCC----eEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE
Confidence                22344422  2223344666664    3999999998886  7889999999999999999999999999876554


Q ss_pred             EEEEeCCCceEEeecEEEECCCCCchh-h--hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHH
Q psy8791         299 AVFKSEDKTERLPYAIMHVTPPMGPVP-E--LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAG  374 (706)
Q Consensus       299 v~~~~~~~g~~i~~D~vI~a~G~~~~~-~--~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~  374 (706)
                      +.+. +++|+++++|.||+|+|.+|+. +  +.+.|+ .+++|+|.||+ ++| |+.|+|||+|||+..  ++++..|..
T Consensus       256 v~v~-~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~-~~~-t~~~~IyA~GD~~~~--~~l~~~A~~  330 (499)
T 1xdi_A          256 VLVT-MTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR-VSR-TLATGIYAAGDCTGL--LPLASVAAM  330 (499)
T ss_dssp             EEEE-ETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS-SSB-CSSTTEEECSGGGTS--CSCHHHHHH
T ss_pred             EEEE-ECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC-Ccc-cCCCCEEEEeccCCC--cccHHHHHH
Confidence            5543 4578899999999999999995 4  566787 67789999999 688 899999999999986  357889999


Q ss_pred             hHHHHHHHHH
Q psy8791         375 QCKVVYDNLS  384 (706)
Q Consensus       375 qg~~~a~ni~  384 (706)
                      ||+++|+||.
T Consensus       331 ~g~~aa~~i~  340 (499)
T 1xdi_A          331 QGRIAMYHAL  340 (499)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999995

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.95  E-value=2.3e-27  Score=263.27  Aligned_cols=307  Identities=16%  Similarity=0.198  Sum_probs=202.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c------------c----ccCccccCccccc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T------------L----IGGGMKKLSDSRR   88 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~------------~----~~~~~~~~~~~~~   88 (706)
                      .++||+|||||+||++||.+|++.  |++|+|||+++.....+..    |            .    .............
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~  101 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQL--GMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKL  101 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCcc
Confidence            457999999999999999999998  8999999998754322110    0            0    0000000000000


Q ss_pred             c------------------ccc-ccCCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCCccc
Q psy8791          89 P------------------MKS-VLPSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGPSAL  147 (706)
Q Consensus        89 ~------------------~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~~~~  147 (706)
                      +                  +.. +...+++++.+++..+++....|...+|  .++.||+||+|||+.+  +.+||.+  
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~ipg~~--  177 (491)
T 3urh_A          102 NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPGVE--  177 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC--CCBTTBC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC--CCCCCcc--
Confidence            0                  111 1226899999988887766656666666  5799999999999885  4577721  


Q ss_pred             ccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeee
Q psy8791         148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKC  227 (706)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~  227 (706)
                                       ..+...                    .+   .+...+..    +..  .++.+       +.+
T Consensus       178 -----------------~~~~~~--------------------~~---~~~~~~~~----~~~--~~~~v-------vVi  204 (491)
T 3urh_A          178 -----------------VAFDEK--------------------TI---VSSTGALA----LEK--VPASM-------IVV  204 (491)
T ss_dssp             -----------------CCCCSS--------------------SE---ECHHHHTS----CSS--CCSEE-------EEE
T ss_pred             -----------------cccCCe--------------------eE---EehhHhhh----hhh--cCCeE-------EEE
Confidence                             000000                    00   01111000    000  11111       223


Q ss_pred             CChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE--EEe
Q psy8791         228 GGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV--FKS  303 (706)
Q Consensus       228 ~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~--~~~  303 (706)
                      +|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||+++++++|.+++.+++.+.  +..
T Consensus       205 GgG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~  278 (491)
T 3urh_A          205 GGGVI--GLELGSVWARLGA----KVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEP  278 (491)
T ss_dssp             CCSHH--HHHHHHHHHHHTC----EEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEE
T ss_pred             CCCHH--HHHHHHHHHHcCC----EEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEe
Confidence            44422  2223344566664    5999999998886  788999999999999999999999999987655443  322


Q ss_pred             CCCc--eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHH
Q psy8791         304 EDKT--ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK  377 (706)
Q Consensus       304 ~~~g--~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~  377 (706)
                      .++|  +++++|.||+|+|++|+..   +...++ .+++|+|.||+ ++| |+.|+|||+|||+..  |+++..|..||+
T Consensus       279 ~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~--~~~~~~A~~~g~  354 (491)
T 3urh_A          279 VKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDR-HFQ-TSIAGVYAIGDVVRG--PMLAHKAEDEGV  354 (491)
T ss_dssp             TTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCT-TCB-CSSTTEEECGGGSSS--CCCHHHHHHHHH
T ss_pred             cCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECC-CCC-CCCCCEEEEEecCCC--ccchhHHHHHHH
Confidence            2224  6899999999999999954   556677 78899999999 688 899999999999975  468899999999


Q ss_pred             HHHHHHHHHHcCCCCCCcccceeeEEEEecCC
Q psy8791         378 VVYDNLSAVMKNRALPHEYNGYTSCPLVTGYS  409 (706)
Q Consensus       378 ~~a~ni~~~l~g~~~~~~~~~~~~~~~~~G~~  409 (706)
                      .+|+||.    |++..+.|.....|+ ...+.
T Consensus       355 ~aa~~i~----g~~~~~~~~~~p~~~-~~~p~  381 (491)
T 3urh_A          355 AVAEIIA----GQAGHVNYDVIPGVV-YTQPE  381 (491)
T ss_dssp             HHHHHHT----TSCCCCCTTCCCEEE-CSSSC
T ss_pred             HHHHHHc----CCCcccCCCCCCEEE-EccCC
Confidence            9999995    544444555544443 33444

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.95  E-value=9.5e-27  Score=242.94  Aligned_cols=289  Identities=16%  Similarity=0.185  Sum_probs=186.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc----cccccCc-cccCccc-ccccccccCCCcEEEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM----FTLIGGG-MKKLSDS-RRPMKSVLPSGATWVK  102 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~----~~~~~~~-~~~~~~~-~~~~~~~~~~~v~~i~  102 (706)
                      .++||+|||||+||++||.+|++.  +++|+|||++.. ...+.    .+.+++. .....++ ........+....+..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~--g~~V~liE~~~~-gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRA--NLKTVMIERGIP-GGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQY   81 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-TGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC-CCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccc
Confidence            468999999999999999999999  899999998752 11111    0111110 0000011 1111122234455544


Q ss_pred             -ceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccch
Q psy8791         103 -DKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGL  181 (706)
Q Consensus       103 -~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (706)
                       ..+...+.....+...+++++.||+||||||+++..|++||.+    .                +..+           
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~----~----------------~~~~-----------  130 (312)
T 4gcm_A           82 GDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQ----E----------------LGGR-----------  130 (312)
T ss_dssp             CCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTT----T----------------TBTT-----------
T ss_pred             eeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChh----h----------------hCCc-----------
Confidence             3444556666667777788999999999999999999999932    0                0000           


Q ss_pred             hhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc
Q psy8791         182 QEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV  261 (706)
Q Consensus       182 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~  261 (706)
                               .+...   ...     ....+.+.+++        .++|+..  ++..+..+++.|.    +|+++++.+.
T Consensus       131 ---------~v~~~---~~~-----~~~~~~~k~vv--------ViGgG~i--g~E~A~~l~~~g~----~Vtlv~~~~~  179 (312)
T 4gcm_A          131 ---------GVSYC---AVC-----DGAFFKNKRLF--------VIGGGDS--AVEEGTFLTKFAD----KVTIVHRRDE  179 (312)
T ss_dssp             ---------TEESC---HHH-----HGGGGTTCEEE--------EECCSHH--HHHHHHHHTTTCS----EEEEECSSSS
T ss_pred             ---------cEEee---ecc-----CccccCCCEEE--------EECCCHH--HHHHHHHHHhcCC----EEEEEecccc
Confidence                     01000   000     00112222222        2344422  2223344555653    5999999998


Q ss_pred             CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE---EE--EEeCCCceEEeecEEEECCCCCchh-hhhcCCCCCC
Q psy8791         262 LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE---AV--FKSEDKTERLPYAIMHVTPPMGPVP-ELATSRLVDQ  335 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~---v~--~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l~~~  335 (706)
                      +++...   ...+.+++.++.......+..+...+..   ..  .....++..+++|.|++++|..|+. .+...++.++
T Consensus       180 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~  256 (312)
T 4gcm_A          180 LRAQRI---LQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITND  256 (312)
T ss_dssp             CCSCHH---HHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCT
T ss_pred             cCcchh---HHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecC
Confidence            876322   2345677888888887766665543321   11  1122356789999999999999994 4555688888


Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHc
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~  388 (706)
                      +|+|.||+ ++| |+.|||||+|||+..+ ++++..|..||+.||.||.++|.
T Consensus       257 ~G~I~vd~-~~~-Ts~pgIyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~~~L~  306 (312)
T 4gcm_A          257 VGYIVTKD-DMT-TSVPGIFAAGDVRDKG-LRQIVTATGDGSIAAQSAAEYIE  306 (312)
T ss_dssp             TSCBCCCT-TSB-CSSTTEEECSTTBSCS-CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEeeCC-CCc-cCCCCEEEEeecCCCc-chHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 788 9999999999999753 45788899999999999998875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.95  E-value=2.2e-27  Score=263.57  Aligned_cols=295  Identities=14%  Similarity=0.166  Sum_probs=190.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC------cc--c----------ccc-cCcc-----ccCcc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ------PM--F----------TLI-GGGM-----KKLSD   85 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~------p~--~----------~~~-~~~~-----~~~~~   85 (706)
                      ++||+|||||+||++||.+|++.  +.+|+|||+++....+      |.  +          ... ..+.     .+...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH--NAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL   79 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHH
Confidence            47999999999999999999998  8999999998631100      11  0          000 0000     00000


Q ss_pred             c-----------ccccccc-cCCCcEEEEceeEEEEcCCCEEEeCC-------------CeEEEecEEEEccccccccCC
Q psy8791          86 S-----------RRPMKSV-LPSGATWVKDKIVSFDPENNRVRTQA-------------GSEISYEYMIVASGIQMYYDR  140 (706)
Q Consensus        86 ~-----------~~~~~~~-~~~~v~~i~~~v~~id~~~~~v~~~~-------------g~~~~yd~lviAtG~~~~~~~  140 (706)
                      +           ...+... ...+++++.++++.+|+  +.+.+.+             +.++.||+||+|||+.+..|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~  157 (500)
T 1onf_A           80 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPP  157 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCC
Confidence            0           0011112 23689999988877764  4555543             567999999999999998888


Q ss_pred             CCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEec
Q psy8791         141 VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTF  220 (706)
Q Consensus       141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~  220 (706)
                      +||.+   +.                                             .+.+.+       .....++.+   
T Consensus       158 i~G~~---~~---------------------------------------------~~~~~~-------~~~~~~~~v---  179 (500)
T 1onf_A          158 VKGIE---NT---------------------------------------------ISSDEF-------FNIKESKKI---  179 (500)
T ss_dssp             CTTGG---GC---------------------------------------------EEHHHH-------TTCCCCSEE---
T ss_pred             CCCCC---cc---------------------------------------------cCHHHH-------hccCCCCeE---
Confidence            88821   00                                             000110       011111111   


Q ss_pred             CCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-C
Q psy8791         221 PATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-K  297 (706)
Q Consensus       221 ~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~  297 (706)
                          +.++|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|+++||++++++.|.+++.++ +
T Consensus       180 ----vViGgG~i--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~  249 (500)
T 1onf_A          180 ----GIVGSGYI--AVELINVIKRLGI----DSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK  249 (500)
T ss_dssp             ----EEECCSHH--HHHHHHHHHTTTC----EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTT
T ss_pred             ----EEECChHH--HHHHHHHHHHcCC----eEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCc
Confidence                22344422  2223344565653    5999999999887  68899999999999999999999999998643 2


Q ss_pred             EEEEEeCCCceE-EeecEEEECCCCCchh-h--hhcCCCCCCCCceeeCccccccCCCCCEEEccccCCC----------
Q psy8791         298 EAVFKSEDKTER-LPYAIMHVTPPMGPVP-E--LATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNL----------  363 (706)
Q Consensus       298 ~v~~~~~~~g~~-i~~D~vI~a~G~~~~~-~--~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~----------  363 (706)
                      .+.+. +++|++ +++|.||+|+|.+|+. .  +.++++..++|+|.||+ ++| |+.|+|||+|||+..          
T Consensus       250 ~~~v~-~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~-~~~-t~~~~iya~GD~~~~~~~~~~~~~~  326 (500)
T 1onf_A          250 NLSIH-LSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDE-NQR-TSVNNIYAVGDCCMVKKSKEIEDLN  326 (500)
T ss_dssp             CEEEE-ETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECT-TCB-CSSSSEEECSTTEEEC---------
T ss_pred             eEEEE-ECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECC-Ccc-cCCCCEEEEeccccccccccccccc
Confidence            23332 346777 9999999999999996 3  45677733789999999 688 899999999999931          


Q ss_pred             ----------------------CCCchHHHHHHhHHHHHHHHHHHHcCCCCCCcccceeeE
Q psy8791         364 ----------------------PTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSC  402 (706)
Q Consensus       364 ----------------------~~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~  402 (706)
                                            ..++++..|..||+++|+||..   +.+....|.....+
T Consensus       327 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g---~~~~~~~~~~~p~~  384 (500)
T 1onf_A          327 LLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFL---KKTRKTNYKLIPTV  384 (500)
T ss_dssp             ---------------------CBCCCCHHHHHHHHHHHHHHHHS---CTTCCCCCSSCCEE
T ss_pred             cccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhC---CCCccCCCCCCCeE
Confidence                                  2356889999999999999952   23323445554443

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.95  E-value=2.6e-27  Score=261.06  Aligned_cols=282  Identities=15%  Similarity=0.151  Sum_probs=192.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------ccccc-------------c-cCcc-----ccC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTL-------------I-GGGM-----KKL   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~-------------~-~~~~-----~~~   83 (706)
                      ++||+|||||+||++||..|++.  +++|+|||++.. ...       |....             . ..+.     .+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~~-gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL--GLSTAIVEPKYW-GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCC-CCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence            36899999999999999999998  899999999842 100       11000             0 0000     000


Q ss_pred             cccc-----------ccccccc-CCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCCCCCccccc
Q psy8791          84 SDSR-----------RPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGPSALIN  149 (706)
Q Consensus        84 ~~~~-----------~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~~g~~~~~~  149 (706)
                      ....           ..+.+.+ ..+++++.+++..++.+...|.+.+|  .++.||+||+|||+.+..|+++|.+    
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~----  155 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLS----  155 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCB----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCC----
Confidence            0000           0011122 36899988776655544345556677  6899999999999999888878721    


Q ss_pred             ccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCC
Q psy8791         150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGG  229 (706)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g  229 (706)
                                                       .       .   .++.+.+..    +... ..++        +.++|
T Consensus       156 ---------------------------------~-------~---~~~~~~~~~----~~~~-~~~v--------vViGg  179 (464)
T 2a8x_A          156 ---------------------------------A-------N---VVTYEEQIL----SREL-PKSI--------IIAGA  179 (464)
T ss_dssp             ---------------------------------T-------T---EECHHHHHT----CSSC-CSEE--------EEECC
T ss_pred             ---------------------------------c-------e---EEecHHHhh----cccc-CCeE--------EEECC
Confidence                                             0       0   011111110    0011 1111        22344


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc
Q psy8791         230 APMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT  307 (706)
Q Consensus       230 ~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g  307 (706)
                      +..  +......+.+.|.    +|+++++.+.+++  ++++.+.+++.|+++||+++++++|.+++.+++.+.+...++|
T Consensus       180 G~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g  253 (464)
T 2a8x_A          180 GAI--GMEFGYVLKNYGV----DVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDG  253 (464)
T ss_dssp             SHH--HHHHHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSS
T ss_pred             cHH--HHHHHHHHHHcCC----eEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCC
Confidence            432  2223334666664    5999999998886  6889999999999999999999999999876544443322234


Q ss_pred             --eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHH
Q psy8791         308 --ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYD  381 (706)
Q Consensus       308 --~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~  381 (706)
                        +++++|.||+|+|.+|+..   +.+.++ .+++|+|.||+ ++| |+.|||||+|||+..  ++++..|..||+++|+
T Consensus       254 ~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~  329 (464)
T 2a8x_A          254 VAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDD-YMR-TNVGHIYAIGDVNGL--LQLAHVAEAQGVVAAE  329 (464)
T ss_dssp             CEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCT-TSB-CSSTTEEECGGGGCS--SCSHHHHHHHHHHHHH
T ss_pred             ceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECc-CCc-cCCCCEEEeECcCCC--ccCHHHHHHHHHHHHH
Confidence              7899999999999999954   466687 67789999999 688 899999999999986  4578899999999999


Q ss_pred             HHH
Q psy8791         382 NLS  384 (706)
Q Consensus       382 ni~  384 (706)
                      ||.
T Consensus       330 ~i~  332 (464)
T 2a8x_A          330 TIA  332 (464)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            995

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.95  E-value=5.5e-27  Score=244.91  Aligned_cols=293  Identities=18%  Similarity=0.169  Sum_probs=189.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc--cc------cccCc--cccCccccccccc-ccCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM--FT------LIGGG--MKKLSDSRRPMKS-VLPS   96 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~--~~------~~~~~--~~~~~~~~~~~~~-~~~~   96 (706)
                      ++.+||+|||||+||++||.+|+++  +++|+|||+++.....+.  ++      .+++-  .....++...+.+ +...
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~--g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~   79 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRS--SLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKY   79 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhc
Confidence            3468999999999999999999999  899999999864222211  00      01000  0000111111111 2235


Q ss_pred             CcEEEEceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCcccccc
Q psy8791          97 GATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDF  174 (706)
Q Consensus        97 ~v~~i~~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (706)
                      ++++...++..+....+  .+.+.++.++.||+||+|||+.++.|++||.+                             
T Consensus        80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~-----------------------------  130 (314)
T 4a5l_A           80 GTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGED-----------------------------  130 (314)
T ss_dssp             TCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHH-----------------------------
T ss_pred             CcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccc-----------------------------
Confidence            77777777777766544  56677788999999999999999999999932                             


Q ss_pred             ccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEE
Q psy8791         175 LRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLT  254 (706)
Q Consensus       175 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~  254 (706)
                              .....   .+..   .    ...........++.+       +.++|+.  +++..+..+.+.|.    +|+
T Consensus       131 --------~~~~~---~~~~---~----~~~~~~~~~~~~~~v-------vViGgG~--ig~e~A~~l~~~G~----~Vt  179 (314)
T 4a5l_A          131 --------KYWQN---GVSA---C----AICDGAVPIFRNKVL-------MVVGGGD--AAMEEALHLTKYGS----KVI  179 (314)
T ss_dssp             --------HHBTT---TEES---C----HHHHTTSGGGTTSEE-------EEECSSH--HHHHHHHHHTTTSS----EEE
T ss_pred             --------ccccc---ceee---e----hhhhhhhhhcCCCeE-------EEECCCh--HHHHHHHHHHHhCC----eee
Confidence                    11100   0000   0    000001111122222       2234432  23333445666664    599


Q ss_pred             EEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC---EEEEE--eCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         255 YCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK---EAVFK--SEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~---~v~~~--~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      ++++.+.....+.   ...+.+...+++.+....+.++...+.   .+.+.  ...+++++++|.+++++|.+||..+..
T Consensus       180 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~  256 (314)
T 4a5l_A          180 ILHRRDAFRASKT---MQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLG  256 (314)
T ss_dssp             EECSSSSCCSCHH---HHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT
T ss_pred             eecccccccccch---hhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhc
Confidence            9998777654332   334556677888888888888765432   23332  234678899999999999999965555


Q ss_pred             CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         330 SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       330 ~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      .++ .+++|.+ ||+ ++| |+.|||||+|||+..+. +++..|..||+.||.++.++|+.
T Consensus       257 ~~~~~~~~G~i-v~~-~~~-Ts~pgIyA~GDv~~~~~-~~~~~A~~~G~~AA~~~~~yL~~  313 (314)
T 4a5l_A          257 GQVKTADDGYI-LTE-GPK-TSVDGVFACGDVCDRVY-RQAIVAAGSGCMAALSCEKWLQT  313 (314)
T ss_dssp             TSSCBCTTSCB-CCB-TTB-CSSTTEEECSTTTCSSC-CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceEcCCeeE-eCC-CCc-cCCCCEEEEEeccCCcc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence            544 7788876 787 677 99999999999998753 46778999999999999988853

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.95  E-value=1e-26  Score=242.44  Aligned_cols=289  Identities=16%  Similarity=0.152  Sum_probs=192.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc--CcccccccCc-cccCccccccccccc-CCCcEEEEc-ee
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY--QPMFTLIGGG-MKKLSDSRRPMKSVL-PSGATWVKD-KI  105 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~--~p~~~~~~~~-~~~~~~~~~~~~~~~-~~~v~~i~~-~v  105 (706)
                      +||+|||||+||++||..|++.  +++|+|||+...-.+  .+.++..... ......+...+.+.. ..+++++.+ +|
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~--g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   79 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARK--GIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSA   79 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEE
Confidence            6899999999999999999998  899999987531111  1111111110 011112222232322 368898887 99


Q ss_pred             EEEEcC-----CCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccc
Q psy8791         106 VSFDPE-----NNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSG  180 (706)
Q Consensus       106 ~~id~~-----~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (706)
                      +.++++     ...|.+++|.++.||+||+|||+.+..+.+||.+  +                  |..+          
T Consensus        80 ~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~--~------------------~~~~----------  129 (310)
T 1fl2_A           80 SKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGED--Q------------------YRTK----------  129 (310)
T ss_dssp             EEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTT--T------------------TBTT----------
T ss_pred             EEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChh--h------------------cccc----------
Confidence            999875     3367788888899999999999998888888831  0                  0000          


Q ss_pred             hhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCC
Q psy8791         181 LQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG  260 (706)
Q Consensus       181 l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~  260 (706)
                                .+..   ...   ...  ....+.++++        +++++.  +......+.+.+    .+|+++++.+
T Consensus       130 ----------~~~~---~~~---~~~--~~~~~~~v~V--------vG~G~~--g~e~A~~l~~~g----~~Vtlv~~~~  177 (310)
T 1fl2_A          130 ----------GVTY---CPH---CDG--PLFKGKRVAV--------IGGGNS--GVEAAIDLAGIV----EHVTLLEFAP  177 (310)
T ss_dssp             ----------TEES---CHH---HHG--GGGBTCEEEE--------ECCSHH--HHHHHHHHHTTB----SEEEEECSSS
T ss_pred             ----------eeEE---ecc---CcH--hhcCCCEEEE--------ECCCHH--HHHHHHHHHHhC----CEEEEEEeCc
Confidence                      1110   000   000  0112222222        333322  122223355444    3699999888


Q ss_pred             cCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCCCC---EEEEEeCCCc--eEEeecEEEECCCCCch-hhhhcCCC-
Q psy8791         261 VLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLANK---EAVFKSEDKT--ERLPYAIMHVTPPMGPV-PELATSRL-  332 (706)
Q Consensus       261 ~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~---~v~~~~~~~g--~~i~~D~vI~a~G~~~~-~~~~~~~l-  332 (706)
                      .+..+    ..+.+.|++ .||++++++++.++..+++   .+.+....+|  .++++|.||+|+|++|+ +++.+ .+ 
T Consensus       178 ~~~~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~l~  252 (310)
T 1fl2_A          178 EMKAD----QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEG-AVE  252 (310)
T ss_dssp             SCCSC----HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-TSC
T ss_pred             ccCcc----HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhc-ccc
Confidence            77433    345666777 6999999999999987644   2444432234  47899999999999999 45554 35 


Q ss_pred             CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       333 ~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      .+++|++.||+ +++ |+.|+|||+|||+..+ ++++..|..||+.+|.||.+.+.+++
T Consensus       253 ~~~~g~i~vd~-~~~-t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~  308 (310)
T 1fl2_A          253 RNRMGEIIIDA-KCE-TNVKGVFAAGDCTTVP-YKQIIIATGEGAKASLSAFDYLIRTK  308 (310)
T ss_dssp             BCTTSCBCCCT-TCB-CSSTTEEECSTTBSCS-SCCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccCCCcEEcCC-CCc-cCCCCEEEeecccCCc-chhhhhhHhhHHHHHHHHHHHHHHhc
Confidence            67789999999 688 8999999999999975 35778899999999999999998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.95  E-value=5.8e-27  Score=246.93  Aligned_cols=299  Identities=16%  Similarity=0.103  Sum_probs=192.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcC----CCCcccCccc----ccccCc--cccCccccccccccc-CCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEP----TDDHYYQPMF----TLIGGG--MKKLSDSRRPMKSVL-PSGA   98 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~----~~~~~~~p~~----~~~~~~--~~~~~~~~~~~~~~~-~~~v   98 (706)
                      .++|+|||||++|+++|..|++.  +++|+|||+    ..........    ...+.-  ......+...+.+.. ..++
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv   85 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT   85 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence            46899999999999999999998  899999998    2211100000    000000  001111222222222 3689


Q ss_pred             EEEEceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCcccccccc
Q psy8791          99 TWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLR  176 (706)
Q Consensus        99 ~~i~~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (706)
                      +++.++|+.++.+.+  +|.+ ++.++.||+||+|+|+.+..+.+||.+  ++              ...|..+.++.. 
T Consensus        86 ~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~--~~--------------~~~~~~~~~~~~-  147 (333)
T 1vdc_A           86 TIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSG--EV--------------LGGFWNRGISAC-  147 (333)
T ss_dssp             EEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCS--SS--------------SSCCBTTTEESC-
T ss_pred             EEEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCcc--cc--------------ccccccCcEEEe-
Confidence            998888999998766  5666 677899999999999998888888832  00              000111111100 


Q ss_pred             CccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEE
Q psy8791         177 RPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYC  256 (706)
Q Consensus       177 ~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~  256 (706)
                                            .   .....+....+.+++        .++++..  +......+.+.+    .+|+++
T Consensus       148 ----------------------~---~~~~~~~~~~~~~v~--------VvG~G~~--g~e~A~~l~~~g----~~V~lv  188 (333)
T 1vdc_A          148 ----------------------A---VCDGAAPIFRNKPLA--------VIGGGDS--AMEEANFLTKYG----SKVYII  188 (333)
T ss_dssp             ----------------------H---HHHTTSGGGTTSEEE--------EECCSHH--HHHHHHHHTTTS----SEEEEE
T ss_pred             ----------------------c---cCccchhhcCCCeEE--------EECCChH--HHHHHHHHHhcC----CeEEEE
Confidence                                  0   000000001122222        2333322  222223344444    369999


Q ss_pred             eCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-----EEEEEeCCCc--eEEeecEEEECCCCCchhhhhc
Q psy8791         257 TGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-----EAVFKSEDKT--ERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-----~v~~~~~~~g--~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      ++.+.+...+.+   .++.+++.||++++++++.+++.+++     .+.+....+|  +++++|.||+|+|++|+..+.+
T Consensus       189 ~~~~~~~~~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~  265 (333)
T 1vdc_A          189 HRRDAFRASKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD  265 (333)
T ss_dssp             CSSSSCCSCHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT
T ss_pred             ecCCcCCccHHH---HHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh
Confidence            998876543222   23456779999999999999987653     2555432234  6899999999999999965555


Q ss_pred             CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         330 SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       330 ~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      .++ .+++|++.||+ +++.|+.|+|||+|||+..+ ++++..|..||+.+|.||.+.+.+++.
T Consensus       266 ~~l~~~~~G~i~vd~-~~~~t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~~  327 (333)
T 1vdc_A          266 GGVELDSDGYVVTKP-GTTQTSVPGVFAAGDVQDKK-YRQAITAAGTGCMAALDAEHYLQEIGS  327 (333)
T ss_dssp             TSSCBCTTSCBCCCT-TSCBCSSTTEEECGGGGCSS-CCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccccCCCCEEech-hhcccCCCCEEEeeeccCCC-chhHHHHHHhHHHHHHHHHHHHHhccc
Confidence            667 67789999998 55558999999999999875 467889999999999999999987764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.95  E-value=3.2e-26  Score=251.76  Aligned_cols=278  Identities=15%  Similarity=0.185  Sum_probs=194.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc----cc---------------ccc-Cccc------c
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM----FT---------------LIG-GGMK------K   82 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~----~~---------------~~~-~~~~------~   82 (706)
                      .++||+|||||+||++||.+|++.  +++|+|||+++. ...+.    .|               ... .+..      +
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF--GKRVALIESKAL-GGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLD   79 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC--CCcEEEEcCCCC-CCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence            357999999999999999999998  899999999852 11100    00               000 0000      0


Q ss_pred             Ccccc-----------cccccc-cCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccc
Q psy8791          83 LSDSR-----------RPMKSV-LPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINA  150 (706)
Q Consensus        83 ~~~~~-----------~~~~~~-~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~  150 (706)
                      ...+.           ..+... ...+++++.++++.++.  +.|.+ +|.++.||+||+|||+.+..|++||.+   + 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~---~-  152 (463)
T 2r9z_A           80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV-EGQRLSADHIVIATGGRPIVPRLPGAE---L-  152 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCSCTTGG---G-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE-CCEEEEcCEEEECCCCCCCCCCCCCcc---c-
Confidence            00000           001111 23689999998888874  56777 677899999999999999888889821   0 


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                                                  ..+.+.+..    +...  .+.+       +.++|+
T Consensus       153 --------------------------------------------~~~~~~~~~----~~~~--~~~v-------vVvGgG  175 (463)
T 2r9z_A          153 --------------------------------------------GITSDGFFA----LQQQ--PKRV-------AIIGAG  175 (463)
T ss_dssp             --------------------------------------------SBCHHHHHH----CSSC--CSEE-------EEECCS
T ss_pred             --------------------------------------------eecHHHHhh----hhcc--CCEE-------EEECCC
Confidence                                                        011111111    1111  1111       223333


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCce
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTE  308 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~  308 (706)
                      ..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.+++.||+++++++|.+++.+++.+.+. +++|+
T Consensus       176 ~~--g~e~A~~l~~~G~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~G~  248 (463)
T 2r9z_A          176 YI--GIELAGLLRSFGS----EVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLV-AQDGT  248 (463)
T ss_dssp             HH--HHHHHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEE-ETTCC
T ss_pred             HH--HHHHHHHHHhcCC----EEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEE-EeCCc
Confidence            22  2233345666664    5999999988776  67888999999999999999999999998654434333 34777


Q ss_pred             -EEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         309 -RLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       309 -~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                       ++++|.||+|+|.+|+..   +.+.++ .+++|+|.||+ +++ |+.|||||+|||+..  +.++..|..||+.+|.||
T Consensus       249 ~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~-t~~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i  324 (463)
T 2r9z_A          249 RLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDA-YQN-TNVPGVYALGDITGR--DQLTPVAIAAGRRLAERL  324 (463)
T ss_dssp             EEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCT-TSB-CSSTTEEECGGGGTS--CCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECC-CCc-cCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHH
Confidence             899999999999999952   455677 67799999999 687 899999999999875  457889999999999999


Q ss_pred             H
Q psy8791         384 S  384 (706)
Q Consensus       384 ~  384 (706)
                      .
T Consensus       325 ~  325 (463)
T 2r9z_A          325 F  325 (463)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.95  E-value=6.1e-27  Score=259.09  Aligned_cols=291  Identities=16%  Similarity=0.184  Sum_probs=193.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccc------------ccc-Ccc------ccC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFT------------LIG-GGM------KKL   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~------------~~~-~~~------~~~   83 (706)
                      ++||+|||||+||++||.+|++.  +++|+|||+++.....       |...            ... .+.      .+.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~   83 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI   83 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence            47999999999999999999998  8999999997653211       1000            000 000      000


Q ss_pred             ccccc-----------cccccc-CCCcEEEEceeEEEEcCCCEEEeCCC------------eEEEecEEEEccccccccC
Q psy8791          84 SDSRR-----------PMKSVL-PSGATWVKDKIVSFDPENNRVRTQAG------------SEISYEYMIVASGIQMYYD  139 (706)
Q Consensus        84 ~~~~~-----------~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g------------~~~~yd~lviAtG~~~~~~  139 (706)
                      ..+..           .+...+ ..+++++.+++..++...-.+.+.+|            .++.||+||+|||+.+..|
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~  163 (482)
T 1ojt_A           84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL  163 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCC
Confidence            00000           011122 36899988877666643323333445            5799999999999988766


Q ss_pred             C-CCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEE
Q psy8791         140 R-VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLY  218 (706)
Q Consensus       140 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv  218 (706)
                      + +|. +  +                                          .+   ++.+.+..    +... ..++  
T Consensus       164 ~~i~~-~--~------------------------------------------~v---~~~~~~~~----~~~~-~~~v--  188 (482)
T 1ojt_A          164 PFIPE-D--P------------------------------------------RI---IDSSGALA----LKEV-PGKL--  188 (482)
T ss_dssp             SSCCC-C--T------------------------------------------TE---ECHHHHTT----CCCC-CSEE--
T ss_pred             CCCCc-c--C------------------------------------------cE---EcHHHHhc----cccc-CCeE--
Confidence            5 442 0  0                                          00   01111100    0001 1111  


Q ss_pred             ecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC
Q psy8791         219 TFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN  296 (706)
Q Consensus       219 ~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~  296 (706)
                            +.++|+..  +......+++.|.    +|+++++.+.+++  ++++.+.+.+.|++.||+++++++|.+++.++
T Consensus       189 ------vViGgG~i--g~E~A~~l~~~G~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~  256 (482)
T 1ojt_A          189 ------LIIGGGII--GLEMGTVYSTLGS----RLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE  256 (482)
T ss_dssp             ------EEESCSHH--HHHHHHHHHHHTC----EEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEET
T ss_pred             ------EEECCCHH--HHHHHHHHHHcCC----eEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcC
Confidence                  22344422  2223344666664    5999999999886  78899999999999999999999999998655


Q ss_pred             CEEEEEeCCC----ceEEeecEEEECCCCCchh-h--hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCch
Q psy8791         297 KEAVFKSEDK----TERLPYAIMHVTPPMGPVP-E--LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKT  368 (706)
Q Consensus       297 ~~v~~~~~~~----g~~i~~D~vI~a~G~~~~~-~--~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~  368 (706)
                      +.+.+.. ++    |+++++|.||+|+|.+|+. +  +.+.++ .+++|+|.||+ ++| |+.|||||+|||+..  +++
T Consensus       257 ~~~~v~~-~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~--~~l  331 (482)
T 1ojt_A          257 DGVYVTF-EGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDK-QMR-TNVPHIYAIGDIVGQ--PML  331 (482)
T ss_dssp             TEEEEEE-ESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCT-TSB-CSSTTEEECGGGTCS--SCC
T ss_pred             CeEEEEE-eccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCC-Ccc-cCCCCEEEEEcccCC--Ccc
Confidence            4433322 23    6789999999999999995 4  466788 67789999999 788 899999999999986  458


Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCCCCcccc
Q psy8791         369 AAAVAGQCKVVYDNLSAVMKNRALPHEYNG  398 (706)
Q Consensus       369 ~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~  398 (706)
                      +..|..||+++|+||.    |++.++.|..
T Consensus       332 ~~~A~~~g~~aa~~i~----g~~~~~~~~~  357 (482)
T 1ojt_A          332 AHKAVHEGHVAAENCA----GHKAYFDARV  357 (482)
T ss_dssp             HHHHHHHHHHHHHHHT----TCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHc----CCCccCCCCC
Confidence            8899999999999995    4443444443

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.95  E-value=4.8e-26  Score=253.69  Aligned_cols=301  Identities=15%  Similarity=0.176  Sum_probs=196.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc--------ccCccc----c------------------ccc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--------YYQPMF----T------------------LIG   77 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~--------~~~p~~----~------------------~~~   77 (706)
                      ...+||+|||||+||++||.+|++.  +.+|+|||+++..        ...+..    |                  ...
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~--G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g  107 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQY--GKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG  107 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence            3457999999999999999999998  8999999996411        100000    0                  000


Q ss_pred             C-----ccccCccccc-----------cccccc-CCCcEEEEceeEEEEcCCCEEEeCCCe--EEEecEEEEcccccccc
Q psy8791          78 G-----GMKKLSDSRR-----------PMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGS--EISYEYMIVASGIQMYY  138 (706)
Q Consensus        78 ~-----~~~~~~~~~~-----------~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~--~~~yd~lviAtG~~~~~  138 (706)
                      .     ...+...+..           .+...+ ..+++++.+++..+++....|...+|+  ++.||+||||||+.+..
T Consensus       108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence            0     0000000000           011111 268999999999999877677766664  79999999999999999


Q ss_pred             CCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEE
Q psy8791         139 DRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLY  218 (706)
Q Consensus       139 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv  218 (706)
                      |++||.+                                     ...          .+.+.+..    +... .+++  
T Consensus       188 p~i~G~~-------------------------------------~~~----------~t~~~~~~----l~~~-~~~v--  213 (519)
T 3qfa_A          188 LGIPGDK-------------------------------------EYC----------ISSDDLFS----LPYC-PGKT--  213 (519)
T ss_dssp             CCCTTHH-------------------------------------HHC----------BCHHHHTT----CSSC-CCSE--
T ss_pred             CCCCCcc-------------------------------------Cce----------EcHHHHhh----hhhc-CCeE--
Confidence            9999821                                     100          01111000    0011 1222  


Q ss_pred             ecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC
Q psy8791         219 TFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN  296 (706)
Q Consensus       219 ~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~  296 (706)
                            +.++|+..  +......+++.|.    +|+++++. .+++  ++++.+.+.+.|++.||++++++.+.++...+
T Consensus       214 ------vVIGgG~i--g~E~A~~l~~~G~----~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~  280 (519)
T 3qfa_A          214 ------LVVGASYV--ALECAGFLAGIGL----DVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIE  280 (519)
T ss_dssp             ------EEECCSHH--HHHHHHHHHHTTC----CEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEE
T ss_pred             ------EEECCcHH--HHHHHHHHHHcCC----eEEEEecc-cccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEcc
Confidence                  22344422  2233345666664    38999874 5555  68899999999999999999998777765321


Q ss_pred             ----CE--EEEEeCCCc--eEEeecEEEECCCCCchhh---hhcCCC-CC-CCCceeeCccccccCCCCCEEEccccCCC
Q psy8791         297 ----KE--AVFKSEDKT--ERLPYAIMHVTPPMGPVPE---LATSRL-VD-QSGYVNVDKATLQHVKYSNVFAIGDCSNL  363 (706)
Q Consensus       297 ----~~--v~~~~~~~g--~~i~~D~vI~a~G~~~~~~---~~~~~l-~~-~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~  363 (706)
                          +.  +.+...+.+  .++++|.||+|+|.+|+..   +...++ .+ ++|+|.||+ ++| |+.|||||+|||+..
T Consensus       281 ~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~-~~~-Ts~~~IyA~GD~~~g  358 (519)
T 3qfa_A          281 AGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD-EEQ-TNVPYIYAIGDILED  358 (519)
T ss_dssp             CCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCT-TSB-CSSTTEEECGGGBSS
T ss_pred             CCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCC-CCc-cCCCCEEEEEeccCC
Confidence                22  333322222  3578999999999999954   556677 55 589999999 688 899999999999953


Q ss_pred             CCCchHHHHHHhHHHHHHHHHHHHcCCCCCCcccceeeEE
Q psy8791         364 PTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCP  403 (706)
Q Consensus       364 ~~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~~  403 (706)
                       .++++..|..||+++|+||.   .+......|.....|.
T Consensus       359 -~~~~~~~A~~~g~~aa~~i~---g~~~~~~~~~~~p~~~  394 (519)
T 3qfa_A          359 -KVELTPVAIQAGRLLAQRLY---AGSTVKCDYENVPTTV  394 (519)
T ss_dssp             -SCCCHHHHHHHHHHHHHHHH---SCCCCCCCCTTCCEEE
T ss_pred             -CCccHHHHHHHHHHHHHHHc---CCCCccCCCCcCcEEE
Confidence             25688899999999999995   2222234455544443

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.95  E-value=9e-27  Score=256.51  Aligned_cols=278  Identities=14%  Similarity=0.158  Sum_probs=194.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCc-------c---------------cccc----cCccccC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP-------M---------------FTLI----GGGMKKL   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p-------~---------------~~~~----~~~~~~~   83 (706)
                      ++||+|||||+||++||.+|+++  |++|+|||++.. ...+       .               .+.+    .....+.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~--G~~V~liEk~~~-GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAAL--GKKVAIAEEFRY-GGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW   81 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCC-CCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence            57999999999999999999999  899999999432 1100       0               0000    0000000


Q ss_pred             cc-----------ccccccccc-CCCcEEEEceeEEEEcCCCEEEe-CCCeEEEecEEEEccccccc-cCCCCCCccccc
Q psy8791          84 SD-----------SRRPMKSVL-PSGATWVKDKIVSFDPENNRVRT-QAGSEISYEYMIVASGIQMY-YDRVKGPSALIN  149 (706)
Q Consensus        84 ~~-----------~~~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~-~~g~~~~yd~lviAtG~~~~-~~~~~g~~~~~~  149 (706)
                      ..           +...+..++ ..+++++.+++..++  .+.+.+ .++.++.||+||+|||+.+. .|.+||.+   +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~---~  156 (463)
T 4dna_A           82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE---L  156 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG---G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc---c
Confidence            00           000011111 248999999888775  356777 57788999999999999998 88899821   0


Q ss_pred             ccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCC
Q psy8791         150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGG  229 (706)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g  229 (706)
                      ...                            ..+.+..                     ...  ++.+       +.++|
T Consensus       157 ~~~----------------------------~~~~~~~---------------------~~~--~~~v-------~ViGg  178 (463)
T 4dna_A          157 CIT----------------------------SNEAFDL---------------------PAL--PESI-------LIAGG  178 (463)
T ss_dssp             CBC----------------------------HHHHTTC---------------------SSC--CSEE-------EEECC
T ss_pred             ccc----------------------------HHHHhhh---------------------hcC--CCeE-------EEECC
Confidence            000                            1111110                     001  1111       22334


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe-CCC
Q psy8791         230 APMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS-EDK  306 (706)
Q Consensus       230 ~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~-~~~  306 (706)
                      +..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||++++++.|.+++.+++.+..+. +++
T Consensus       179 G~~--g~e~A~~l~~~g~----~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~  252 (463)
T 4dna_A          179 GYI--AVEFANIFHGLGV----KTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKH  252 (463)
T ss_dssp             SHH--HHHHHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSS
T ss_pred             CHH--HHHHHHHHHHcCC----eEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCC
Confidence            322  2223334566664    5999999988876  788999999999999999999999999987643322334 557


Q ss_pred             ceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         307 TERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       307 g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                      |+ +++|.||+|+|.+|+..   +.+.++ .+++|++.||+ +++ |+.|||||+|||+..  ++++..|..||+++|+|
T Consensus       253 g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~iya~GD~~~~--~~~~~~A~~~g~~aa~~  327 (463)
T 4dna_A          253 GE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDA-FSR-TSTPGIYALGDVTDR--VQLTPVAIHEAMCFIET  327 (463)
T ss_dssp             CE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCT-TCB-CSSTTEEECSGGGSS--CCCHHHHHHHHHHHHHH
T ss_pred             Ce-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECc-CCC-CCCCCEEEEEecCCC--CCChHHHHHHHHHHHHH
Confidence            77 99999999999999955   566788 78899999999 688 999999999999985  56888999999999999


Q ss_pred             HH
Q psy8791         383 LS  384 (706)
Q Consensus       383 i~  384 (706)
                      |.
T Consensus       328 i~  329 (463)
T 4dna_A          328 EY  329 (463)
T ss_dssp             HH
T ss_pred             Hc
Confidence            95

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.95  E-value=5.6e-27  Score=247.24  Aligned_cols=295  Identities=19%  Similarity=0.177  Sum_probs=193.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc---cCcccccccCc--cccCccccccccccc-CCCcEEE
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY---YQPMFTLIGGG--MKKLSDSRRPMKSVL-PSGATWV  101 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~---~~p~~~~~~~~--~~~~~~~~~~~~~~~-~~~v~~i  101 (706)
                      ..+++|+|||||+||+++|..|++.  +++|+|||++....   +.......+..  ......+...+.+.. +.+++++
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~   89 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARA--QLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLR   89 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHT--TCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            3457999999999999999999998  89999999753210   00000000000  001111222222222 3688998


Q ss_pred             EceeEEEEcCC-CEE-EeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCcc
Q psy8791         102 KDKIVSFDPEN-NRV-RTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPS  179 (706)
Q Consensus       102 ~~~v~~id~~~-~~v-~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (706)
                      .++|++++... .+| .+.++.++.||+||+|||+.+..+.+||.                                   
T Consensus        90 ~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~-----------------------------------  134 (335)
T 2a87_A           90 MEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGE-----------------------------------  134 (335)
T ss_dssp             CCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHH-----------------------------------
T ss_pred             EeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCch-----------------------------------
Confidence            88899998732 256 77788889999999999999888888882                                   


Q ss_pred             chhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCC
Q psy8791         180 GLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGM  259 (706)
Q Consensus       180 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~  259 (706)
                        ..... .  .+...   ....   ..+  ..+.+++        .++++.. ..++ ...+.+.+    .+|+++++.
T Consensus       135 --~~~~~-~--~~~~~---~~~~---~~~--~~~~~v~--------ViG~G~~-g~e~-a~~l~~~g----~~V~l~~~~  187 (335)
T 2a87_A          135 --QELLG-R--GVSSC---ATCD---GFF--FRDQDIA--------VIGGGDS-AMEE-ATFLTRFA----RSVTLVHRR  187 (335)
T ss_dssp             --HHTBT-T--TEESC---HHHH---GGG--GTTCEEE--------EECSSHH-HHHH-HHHHTTTC----SEEEEECSS
T ss_pred             --HhccC-C--ceEEe---eccc---hhh--cCCCEEE--------EECCCHH-HHHH-HHHHHHhC----CeEEEEEcC
Confidence              11100 0  11110   0000   000  1222222        2333322 1222 22344444    369999988


Q ss_pred             CcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC--EEEEEeCCCc--eEEeecEEEECCCCCchhhhhcCCC-CC
Q psy8791         260 GVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSEDKT--ERLPYAIMHVTPPMGPVPELATSRL-VD  334 (706)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~v~~~~~~~g--~~i~~D~vI~a~G~~~~~~~~~~~l-~~  334 (706)
                      +.+...+.+.   ++.+++.||++++++++.+++.+++  .+.+....+|  +++++|.||+|+|++|+..+.+.++ .+
T Consensus       188 ~~~~~~~~~~---~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~  264 (335)
T 2a87_A          188 DEFRASKIML---DRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVD  264 (335)
T ss_dssp             SSCSSCTTHH---HHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBC
T ss_pred             CcCCccHHHH---HHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccC
Confidence            8765433322   2445779999999999999987653  3555432233  6899999999999999965555566 67


Q ss_pred             CCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         335 QSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       335 ~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      ++|++.||+ +++.|+.|||||+|||+..+ ++++..|..||+.+|.||.+.+.+++
T Consensus       265 ~~G~i~vd~-~~~~t~~~~iya~GD~~~~~-~~~~~~A~~~g~~aA~~i~~~l~~~~  319 (335)
T 2a87_A          265 PDGYVLVQG-RTTSTSLPGVFAAGDLVDRT-YRQAVTAAGSGCAAAIDAERWLAEHA  319 (335)
T ss_dssp             TTSCBCCST-TSSBCSSTTEEECGGGTCCS-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccEEeCC-CCCccCCCCEEEeeecCCcc-HHHHHHHHHhHHHHHHHHHHHhhcCc
Confidence            789999998 45559999999999999864 46788999999999999999997654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.95  E-value=1.6e-26  Score=255.62  Aligned_cols=282  Identities=14%  Similarity=0.134  Sum_probs=195.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC------ccc------------ccc-cCccc------cC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ------PMF------------TLI-GGGMK------KL   83 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~------p~~------------~~~-~~~~~------~~   83 (706)
                      .++||+|||||+||++||..|++.  +++|+|||++.....+      |..            ... ..+..      +.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~--G~~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAEL--GARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            458999999999999999999999  8999999987531000      000            000 00000      00


Q ss_pred             cc-----------cccccccc-cCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccC---CCCCCcccc
Q psy8791          84 SD-----------SRRPMKSV-LPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYD---RVKGPSALI  148 (706)
Q Consensus        84 ~~-----------~~~~~~~~-~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~---~~~g~~~~~  148 (706)
                      ..           +...+... ...+++++.+++..+++....+. .++.++.||+||+|||+.+..|   ++||.+   
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~---  172 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS---  172 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc---
Confidence            00           00001111 12589999999988888777777 4567899999999999999888   888821   


Q ss_pred             cccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeC
Q psy8791         149 NALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCG  228 (706)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~  228 (706)
                      +...                            ....+..                     ... ..++        +.++
T Consensus       173 ~~~~----------------------------~~~~~~~---------------------~~~-~~~v--------vViG  194 (478)
T 3dk9_A          173 LGIT----------------------------SDGFFQL---------------------EEL-PGRS--------VIVG  194 (478)
T ss_dssp             GSBC----------------------------HHHHTTC---------------------CSC-CSEE--------EEEC
T ss_pred             eeEc----------------------------hHHhhch---------------------hhc-CccE--------EEEC
Confidence            0000                            1111110                     011 1111        2234


Q ss_pred             ChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC--EEEEEeC
Q psy8791         229 GAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSE  304 (706)
Q Consensus       229 g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~v~~~~~  304 (706)
                      |+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||++++++.|.+++.+++  .+.+...
T Consensus       195 gG~~--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  268 (478)
T 3dk9_A          195 AGYI--AVEMAGILSALGS----KTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTA  268 (478)
T ss_dssp             CSHH--HHHHHHHHHHTTC----EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEEC
T ss_pred             CCHH--HHHHHHHHHHcCC----eEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEc
Confidence            4422  2233345666664    5999999998876  688999999999999999999999999986432  2333322


Q ss_pred             CC------ceEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHH
Q psy8791         305 DK------TERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAG  374 (706)
Q Consensus       305 ~~------g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~  374 (706)
                      +.      |+++++|.||+|+|.+|+..   +...++ .+++|+|.||+ +++ |+.|||||+|||+..  ++++..|..
T Consensus       269 ~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~--~~~~~~A~~  344 (478)
T 3dk9_A          269 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDE-FQN-TNVKGIYAVGDVCGK--ALLTPVAIA  344 (478)
T ss_dssp             CTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCT-TCB-CSSTTEEECGGGGCS--SCCHHHHHH
T ss_pred             cCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCC-Ccc-cCCCCEEEEEecCCC--CccHhHHHH
Confidence            21      36899999999999999954   566788 77899999999 677 899999999999954  568889999


Q ss_pred             hHHHHHHHHH
Q psy8791         375 QCKVVYDNLS  384 (706)
Q Consensus       375 qg~~~a~ni~  384 (706)
                      ||+++|+||.
T Consensus       345 ~g~~aa~~i~  354 (478)
T 3dk9_A          345 AGRKLAHRLF  354 (478)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999999995

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.95  E-value=1.4e-26  Score=254.90  Aligned_cols=279  Identities=19%  Similarity=0.238  Sum_probs=192.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------cccccc-------------cCcc-----ccCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTLI-------------GGGM-----KKLS   84 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~~-------------~~~~-----~~~~   84 (706)
                      ++||+|||||+||++||.+|++.  +.+|+|||+++. ...       |.....             ..+.     .+..
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~--g~~V~lie~~~~-GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL--GLKVLAVEAGEV-GGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCC-CCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence            47899999999999999999998  899999999872 110       110000             0000     0000


Q ss_pred             cccc-----------cccccc-CCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCC-CCCCccccccc
Q psy8791          85 DSRR-----------PMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDR-VKGPSALINAL  151 (706)
Q Consensus        85 ~~~~-----------~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~-~~g~~~~~~~~  151 (706)
                      .+..           .+..++ ..+++++.++++.+++  ++|.+. |.++.||+||+|||+.+..|+ +|+.   +   
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~---~---  153 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFG---E---  153 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCS---S---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC---C---
Confidence            0100           011122 2689999988877764  577776 678999999999999887765 5540   0   


Q ss_pred             ccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChh
Q psy8791         152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAP  231 (706)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~  231 (706)
                                                             .+   ++.+++..    +......++        +.++|+.
T Consensus       154 ---------------------------------------~v---~~~~~~~~----l~~~~~~~v--------vViGgG~  179 (464)
T 2eq6_A          154 ---------------------------------------DV---WDSTRALK----VEEGLPKRL--------LVIGGGA  179 (464)
T ss_dssp             ---------------------------------------SE---ECHHHHTC----GGGCCCSEE--------EEECCSH
T ss_pred             ---------------------------------------cE---EcHHHHHh----hhhhcCCEE--------EEECCCH
Confidence                                                   00   01111100    111111122        2234443


Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCC--c
Q psy8791         232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK--T  307 (706)
Q Consensus       232 ~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~--g  307 (706)
                      .  +......+++.|.    +|+++++.+.+++  ++.+.+.+++.|++.||+++++++|.+++.+++.+.+...++  |
T Consensus       180 ~--g~e~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g  253 (464)
T 2eq6_A          180 V--GLELGQVYRRLGA----EVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGG  253 (464)
T ss_dssp             H--HHHHHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCC
T ss_pred             H--HHHHHHHHHHCCC----eEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCC
Confidence            2  2233345666664    5999999988876  688999999999999999999999999987655444332213  5


Q ss_pred             e--EEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHH
Q psy8791         308 E--RLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYD  381 (706)
Q Consensus       308 ~--~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~  381 (706)
                      +  ++++|.||+|+|.+|+..   +...++ .+++|+|.||+ ++| |+.|+|||+|||+..  ++++..|..||+.+|+
T Consensus       254 ~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~Iya~GD~~~~--~~l~~~A~~~g~~aa~  329 (464)
T 2eq6_A          254 EGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNA-RME-TSVPGVYAIGDAARP--PLLAHKAMREGLIAAE  329 (464)
T ss_dssp             SCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCT-TCB-CSSTTEEECGGGTCS--SCCHHHHHHHHHHHHH
T ss_pred             ceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECC-Ccc-cCCCCEEEEeccCCC--cccHHHHHHHHHHHHH
Confidence            5  899999999999999954   456677 67789999999 688 899999999999986  4578899999999999


Q ss_pred             HHH
Q psy8791         382 NLS  384 (706)
Q Consensus       382 ni~  384 (706)
                      ||.
T Consensus       330 ~i~  332 (464)
T 2eq6_A          330 NAA  332 (464)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            995

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.95  E-value=1.7e-26  Score=255.65  Aligned_cols=278  Identities=15%  Similarity=0.188  Sum_probs=194.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c------------------cccC----ccccC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T------------------LIGG----GMKKL   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~------------------~~~~----~~~~~   83 (706)
                      ++||+|||||+||++||.+|+++  |++|+|||++.. ...+..    |                  ....    ...+.
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~-GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~  102 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGAL--GKRVAIAEEYRI-GGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW  102 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--cCEEEEEeCCCC-CCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence            47999999999999999999999  899999999542 111000    0                  0000    00000


Q ss_pred             cc-----------ccccccccc-CCCcEEEEceeEEEEcCCCEEEeC-CCeEEEecEEEEccccccc-cCCCCCCccccc
Q psy8791          84 SD-----------SRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQ-AGSEISYEYMIVASGIQMY-YDRVKGPSALIN  149 (706)
Q Consensus        84 ~~-----------~~~~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~-~g~~~~yd~lviAtG~~~~-~~~~~g~~~~~~  149 (706)
                      ..           +...+...+ ..+++++.+++..++.  +.+.+. ++.++.||++|+|||+.+. .|.+||.+   +
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~---~  177 (484)
T 3o0h_A          103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSD---L  177 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG---G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc---c
Confidence            00           000111112 2689999999988875  467776 7778999999999999998 88888821   0


Q ss_pred             ccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCC
Q psy8791         150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGG  229 (706)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g  229 (706)
                      ...                            ....+..                     ...  ++.+       +.++|
T Consensus       178 ~~~----------------------------~~~~~~~---------------------~~~--~~~v-------~ViGg  199 (484)
T 3o0h_A          178 CLT----------------------------SNEIFDL---------------------EKL--PKSI-------VIVGG  199 (484)
T ss_dssp             SBC----------------------------TTTGGGC---------------------SSC--CSEE-------EEECC
T ss_pred             ccc----------------------------HHHHHhH---------------------Hhc--CCcE-------EEECc
Confidence            000                            0000000                     000  1111       22333


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc
Q psy8791         230 APMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT  307 (706)
Q Consensus       230 ~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g  307 (706)
                      +..  +......+.+.|.    +++++++.+.+++  ++.+.+.+.+.+++.||+++++++|++++.+++.+.+ .+++|
T Consensus       200 G~~--g~e~A~~l~~~g~----~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v-~~~~g  272 (484)
T 3o0h_A          200 GYI--GVEFANIFHGLGV----KTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNV-VLTNG  272 (484)
T ss_dssp             SHH--HHHHHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEE-EETTS
T ss_pred             CHH--HHHHHHHHHHcCC----eEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEE-EECCC
Confidence            322  2223344566664    5999999988876  7889999999999999999999999999876554544 34578


Q ss_pred             eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         308 ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       308 ~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      +++++|.||+|+|.+|+..   +...++ .+++|++.||+ +++ |+.|||||+|||+..  ++++..|..||+++|+||
T Consensus       273 ~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i  348 (484)
T 3o0h_A          273 QTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDE-KMT-TNVSHIWAVGDVTGH--IQLTPVAIHDAMCFVKNA  348 (484)
T ss_dssp             CEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCT-TSB-CSSTTEEECGGGGTS--CCCHHHHHHHHHHHHHHH
T ss_pred             cEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECC-CCC-CCCCCEEEEEecCCC--CcCHHHHHHHHHHHHHHH
Confidence            8999999999999999955   556787 78889999999 688 999999999999985  468889999999999999


Q ss_pred             H
Q psy8791         384 S  384 (706)
Q Consensus       384 ~  384 (706)
                      .
T Consensus       349 ~  349 (484)
T 3o0h_A          349 F  349 (484)
T ss_dssp             H
T ss_pred             c
Confidence            6

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.94  E-value=1.3e-26  Score=256.33  Aligned_cols=299  Identities=17%  Similarity=0.192  Sum_probs=199.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------------ccc---------cccc--Cccc--c
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------------PMF---------TLIG--GGMK--K   82 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------------p~~---------~~~~--~~~~--~   82 (706)
                      .++||+|||||+||++||.+|++.  |++|+|||+++.....             |..         ....  ....  .
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~   79 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS   79 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            358999999999999999999999  8999999998621100             100         0000  0000  0


Q ss_pred             Ccccccc------------------ccccc-CCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccCCC
Q psy8791          83 LSDSRRP------------------MKSVL-PSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRV  141 (706)
Q Consensus        83 ~~~~~~~------------------~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~~~  141 (706)
                      ......+                  +..++ ..+++++.+++..+++....|...+|  .++.||+||+|||+.+..++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~  159 (476)
T 3lad_A           80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP  159 (476)
T ss_dssp             CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred             cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence            0000000                  11111 25799999998888877667777777  578999999999998875544


Q ss_pred             CCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhc-cCCCEEEec
Q psy8791         142 KGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF-QSGPVLYTF  220 (706)
Q Consensus       142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~g~~vv~~  220 (706)
                      ++.+                       ..                    .+.   +...+       ... ..++.+   
T Consensus       160 ~~~~-----------------------~~--------------------~v~---~~~~~-------~~~~~~~~~v---  183 (476)
T 3lad_A          160 APVD-----------------------QD--------------------VIV---DSTGA-------LDFQNVPGKL---  183 (476)
T ss_dssp             SCCC-----------------------SS--------------------SEE---EHHHH-------TSCSSCCSEE---
T ss_pred             CCCC-----------------------cc--------------------cEE---echhh-------hccccCCCeE---
Confidence            4311                       00                    000   00000       000 011111   


Q ss_pred             CCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE
Q psy8791         221 PATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE  298 (706)
Q Consensus       221 ~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~  298 (706)
                          +.++|+..  +......+.+.|.    +|+++++.+.+++  ++.+.+.+++.|++.||+++++++|.+++.+++.
T Consensus       184 ----~ViGgG~~--g~e~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~  253 (476)
T 3lad_A          184 ----GVIGAGVI--GLELGSVWARLGA----EVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ  253 (476)
T ss_dssp             ----EEECCSHH--HHHHHHHHHHTTC----EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC
T ss_pred             ----EEECCCHH--HHHHHHHHHHcCC----cEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCE
Confidence                22334422  2223344666664    5999999998886  7889999999999999999999999999866554


Q ss_pred             EEEEeC-CCc-eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHH
Q psy8791         299 AVFKSE-DKT-ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAV  372 (706)
Q Consensus       299 v~~~~~-~~g-~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a  372 (706)
                      +.+... .+| +++++|.||+|+|.+|+..   +...++ .+++|+|.||+ +++ |+.|||||+|||+..  |.++..|
T Consensus       254 ~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~-t~~~~Iya~GD~~~~--~~~~~~A  329 (476)
T 3lad_A          254 VTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDD-YCA-TSVPGVYAIGDVVRG--AMLAHKA  329 (476)
T ss_dssp             EEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCT-TSB-CSSTTEEECGGGSSS--CCCHHHH
T ss_pred             EEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCC-Ccc-cCCCCEEEEEccCCC--cccHHHH
Confidence            433222 133 6899999999999999953   456677 77889999999 688 899999999999965  4588999


Q ss_pred             HHhHHHHHHHHHHHHcCCCCCCcccceeeEE
Q psy8791         373 AGQCKVVYDNLSAVMKNRALPHEYNGYTSCP  403 (706)
Q Consensus       373 ~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~~  403 (706)
                      ..||+++|+||.    |++.++.|.....|+
T Consensus       330 ~~~g~~aa~~i~----g~~~~~~~~~~p~~~  356 (476)
T 3lad_A          330 SEEGVVVAERIA----GHKAQMNYDLIPAVI  356 (476)
T ss_dssp             HHHHHHHHHHHH----HCCCCCCTTCCCEEE
T ss_pred             HHHHHHHHHHhc----CCCcccCCCCCCEEE
Confidence            999999999996    333334455444443

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.94  E-value=1e-25  Score=249.39  Aligned_cols=299  Identities=14%  Similarity=0.170  Sum_probs=195.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc-------ccC---------ccc---------------ccc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH-------YYQ---------PMF---------------TLI   76 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~-------~~~---------p~~---------------~~~   76 (706)
                      ...+||+|||||+||++||.+|++.  |++|+|||+++..       .+.         |..               ..+
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~   84 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLN--GARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY   84 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC--CCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence            3468999999999999999999998  8999999953210       010         100               000


Q ss_pred             --cCc---cccCccccc-----------cccc-ccCCCcEEEEceeEEEEcCCCEEEeCCCe-EEEecEEEEcccccccc
Q psy8791          77 --GGG---MKKLSDSRR-----------PMKS-VLPSGATWVKDKIVSFDPENNRVRTQAGS-EISYEYMIVASGIQMYY  138 (706)
Q Consensus        77 --~~~---~~~~~~~~~-----------~~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g~-~~~yd~lviAtG~~~~~  138 (706)
                        ...   ..+...+..           .+.. +...+++++.+++..+++....|.+.+|. ++.||+||+|||+.+..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~  164 (483)
T 3dgh_A           85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRY  164 (483)
T ss_dssp             TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECC
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCC
Confidence              000   000000000           0001 12368999999998888776667666664 79999999999999999


Q ss_pred             CCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEE
Q psy8791         139 DRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLY  218 (706)
Q Consensus       139 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv  218 (706)
                      |++||.+                                     ...          .+.+.+..    +... ..++  
T Consensus       165 p~i~G~~-------------------------------------~~~----------~~~~~~~~----~~~~-~~~v--  190 (483)
T 3dgh_A          165 PDIPGAV-------------------------------------EYG----------ITSDDLFS----LDRE-PGKT--  190 (483)
T ss_dssp             CSSTTHH-------------------------------------HHC----------BCHHHHTT----CSSC-CCEE--
T ss_pred             CCCCCcc-------------------------------------ccc----------CcHHHHhh----hhhc-CCcE--
Confidence            9999921                                     100          01111000    0011 1111  


Q ss_pred             ecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC
Q psy8791         219 TFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN  296 (706)
Q Consensus       219 ~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~  296 (706)
                            +.++|+..  +......+.+.|.    +|+++++. .+++  ++++.+.+.+.|++.||++++++.+.+++.++
T Consensus       191 ------vViGgG~~--g~E~A~~l~~~g~----~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~  257 (483)
T 3dgh_A          191 ------LVVGAGYI--GLECAGFLKGLGY----EPTVMVRS-IVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQD  257 (483)
T ss_dssp             ------EEECCSHH--HHHHHHHHHHTTC----EEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECT
T ss_pred             ------EEECCCHH--HHHHHHHHHHcCC----EEEEEeCC-CCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC
Confidence                  22334322  2233345666664    59999874 4554  78899999999999999999999999998643


Q ss_pred             -CE--EEEEeCCC--ceEEeecEEEECCCCCchh-hh--hcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCc
Q psy8791         297 -KE--AVFKSEDK--TERLPYAIMHVTPPMGPVP-EL--ATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK  367 (706)
Q Consensus       297 -~~--v~~~~~~~--g~~i~~D~vI~a~G~~~~~-~~--~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~  367 (706)
                       +.  +.+...++  ..++++|.||+|+|.+|+. .+  ...++ .++ |+|.||+ +++ |+.|||||+|||+.. .|+
T Consensus       258 ~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~-~~~-t~~~~IyA~GD~~~~-~~~  333 (483)
T 3dgh_A          258 DGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDS-QEA-TNVANIYAVGDIIYG-KPE  333 (483)
T ss_dssp             TSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCT-TCB-CSSTTEEECSTTBTT-SCC
T ss_pred             CCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECc-CCc-cCCCCEEEEEcccCC-CCc
Confidence             22  44433221  2379999999999999994 33  56787 555 9999999 677 899999999999853 356


Q ss_pred             hHHHHHHhHHHHHHHHHHHHcCCC-CCCcccceeeEE
Q psy8791         368 TAAAVAGQCKVVYDNLSAVMKNRA-LPHEYNGYTSCP  403 (706)
Q Consensus       368 ~~~~a~~qg~~~a~ni~~~l~g~~-~~~~~~~~~~~~  403 (706)
                      ++..|..||+++|+||.    |.. ....|.....|+
T Consensus       334 ~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~  366 (483)
T 3dgh_A          334 LTPVAVLAGRLLARRLY----GGSTQRMDYKDVATTV  366 (483)
T ss_dssp             CHHHHHHHHHHHHHHHH----SCCCCCCCCTTCCEEE
T ss_pred             cHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEE
Confidence            88899999999999995    332 234555544443

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.94  E-value=1e-25  Score=249.76  Aligned_cols=284  Identities=15%  Similarity=0.168  Sum_probs=191.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC--------cccC-------ccc---------------ccccC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD--------HYYQ-------PMF---------------TLIGG   78 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~--------~~~~-------p~~---------------~~~~~   78 (706)
                      .++||+|||||+||++||.+|++.  |.+|+|||+++.        ....       |..               ..+..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~--G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~   82 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQL--GKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW   82 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence            457999999999999999999998  899999997321        1110       000               00000


Q ss_pred             -----ccccCcccccc-----------ccc-ccCCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccccC
Q psy8791          79 -----GMKKLSDSRRP-----------MKS-VLPSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYD  139 (706)
Q Consensus        79 -----~~~~~~~~~~~-----------~~~-~~~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~~~  139 (706)
                           ...+...+...           +.. +...+++++.+++..+++....|...+|  .++.||+||+|||+.+..|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p  162 (488)
T 3dgz_A           83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYP  162 (488)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCC
Confidence                 00000000000           111 1226899999999888876666666666  5799999999999999988


Q ss_pred             C-CCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEE
Q psy8791         140 R-VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLY  218 (706)
Q Consensus       140 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv  218 (706)
                      + +||.+  ++.                                             .+.+.+..    +... .+++  
T Consensus       163 ~~i~G~~--~~~---------------------------------------------~~~~~~~~----~~~~-~~~v--  188 (488)
T 3dgz_A          163 TQVKGAL--EYG---------------------------------------------ITSDDIFW----LKES-PGKT--  188 (488)
T ss_dssp             SSCBTHH--HHC---------------------------------------------BCHHHHTT----CSSC-CCSE--
T ss_pred             CCCCCcc--ccc---------------------------------------------CcHHHHHh----hhhc-CCeE--
Confidence            8 99921  000                                             00111000    0011 1122  


Q ss_pred             ecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCC-
Q psy8791         219 TFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLA-  295 (706)
Q Consensus       219 ~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-  295 (706)
                            +.++|+..  +......+.+.|.    +|+++++.. +++  ++++.+.+.+.|++.||++++++.+.+++.. 
T Consensus       189 ------vViGgG~i--g~E~A~~l~~~g~----~Vtlv~~~~-~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~  255 (488)
T 3dgz_A          189 ------LVVGASYV--ALECAGFLTGIGL----DTTVMMRSI-PLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLP  255 (488)
T ss_dssp             ------EEECCSHH--HHHHHHHHHHTTC----CEEEEESSC-SSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECT
T ss_pred             ------EEECCCHH--HHHHHHHHHHcCC----ceEEEEcCc-ccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence                  22344322  2233345666664    389998764 444  6889999999999999999999999999752 


Q ss_pred             CC--EEEEEeCCCce--EEeecEEEECCCCCchhh---hhcCCC-CC-CCCceeeCccccccCCCCCEEEccccCCCCCC
Q psy8791         296 NK--EAVFKSEDKTE--RLPYAIMHVTPPMGPVPE---LATSRL-VD-QSGYVNVDKATLQHVKYSNVFAIGDCSNLPTS  366 (706)
Q Consensus       296 ~~--~v~~~~~~~g~--~i~~D~vI~a~G~~~~~~---~~~~~l-~~-~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~  366 (706)
                      ++  .+.+...++|+  ++++|.||+|+|.+|+..   +...++ .+ ++|+|.||+ ++| |+.|||||+|||+.. .+
T Consensus       256 ~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~-~~  332 (488)
T 3dgz_A          256 TNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDA-QEA-TSVPHIYAIGDVAEG-RP  332 (488)
T ss_dssp             TSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCT-TSB-CSSTTEEECGGGBTT-CC
T ss_pred             CCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECC-CCc-cCCCCEEEeEEecCC-CC
Confidence            23  24444333355  579999999999999954   456677 66 789999998 688 899999999999853 35


Q ss_pred             chHHHHHHhHHHHHHHHH
Q psy8791         367 KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       367 ~~~~~a~~qg~~~a~ni~  384 (706)
                      +++..|..||+++|+||.
T Consensus       333 ~~~~~A~~~g~~aa~~i~  350 (488)
T 3dgz_A          333 ELTPTAIKAGKLLAQRLF  350 (488)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHc
Confidence            688899999999999995

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.94  E-value=2.4e-26  Score=254.45  Aligned_cols=285  Identities=18%  Similarity=0.165  Sum_probs=190.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc----c----------------cc-cCccccCccccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF----T----------------LI-GGGMKKLSDSRR   88 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----~----------------~~-~~~~~~~~~~~~   88 (706)
                      ++||+|||||+||++||..|++.  +++|+|||+++.....+..    |                .. ..+.........
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~   82 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI   82 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence            47999999999999999999998  8999999997643211000    0                00 000000000000


Q ss_pred             c------------------cccc-cCCCcEEEEceeEEEEcCCCEEEeCCC--eE------EEecEEEEccccccccCCC
Q psy8791          89 P------------------MKSV-LPSGATWVKDKIVSFDPENNRVRTQAG--SE------ISYEYMIVASGIQMYYDRV  141 (706)
Q Consensus        89 ~------------------~~~~-~~~~v~~i~~~v~~id~~~~~v~~~~g--~~------~~yd~lviAtG~~~~~~~~  141 (706)
                      +                  +... ...+++++.++...++.....|.+.+|  .+      +.||+||+|||+.+.  .+
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~--~~  160 (478)
T 1v59_A           83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT--PF  160 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC--CC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC--CC
Confidence            0                  1111 236899988776655443334555566  46      999999999999873  45


Q ss_pred             CCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecC
Q psy8791         142 KGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFP  221 (706)
Q Consensus       142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~  221 (706)
                      ||.+                     +...                    .+   .+.+.+..    +... ..+      
T Consensus       161 ~g~~---------------------~~~~--------------------~v---~~~~~~~~----~~~~-~~~------  185 (478)
T 1v59_A          161 PGIE---------------------IDEE--------------------KI---VSSTGALS----LKEI-PKR------  185 (478)
T ss_dssp             TTCC---------------------CCSS--------------------SE---ECHHHHTT----CSSC-CSE------
T ss_pred             CCCC---------------------CCCc--------------------eE---EcHHHHHh----hhcc-Cce------
Confidence            6621                     0000                    00   11111110    0011 111      


Q ss_pred             CCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeC--CCC
Q psy8791         222 ATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDL--ANK  297 (706)
Q Consensus       222 ~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~  297 (706)
                        .+.++|+..  +......+++.|.    +|+++++.+.+++  ++.+.+.+.+.|++.||+++++++|.+++.  +++
T Consensus       186 --vvViGgG~~--g~e~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~  257 (478)
T 1v59_A          186 --LTIIGGGII--GLEMGSVYSRLGS----KVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKN  257 (478)
T ss_dssp             --EEEECCSHH--HHHHHHHHHHTTC----EEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTT
T ss_pred             --EEEECCCHH--HHHHHHHHHHcCC----EEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCC
Confidence              122344432  2233345666664    5999999998886  688999999999999999999999999986  444


Q ss_pred             EEEEEeC----CCceEEeecEEEECCCCCchh---hhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchH
Q psy8791         298 EAVFKSE----DKTERLPYAIMHVTPPMGPVP---ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTA  369 (706)
Q Consensus       298 ~v~~~~~----~~g~~i~~D~vI~a~G~~~~~---~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~  369 (706)
                      .+.+...    ++++++++|.||+|+|.+|+.   ++.+.++ .+++|+|.||+ ++| |+.|+|||+|||+..  ++++
T Consensus       258 ~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~-t~~~~IyA~GD~~~~--~~~~  333 (478)
T 1v59_A          258 VVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDD-QFN-SKFPHIKVVGDVTFG--PMLA  333 (478)
T ss_dssp             EEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCT-TSB-CSSTTEEECGGGSSS--CCCH
T ss_pred             eEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECc-CCc-cCCCCEEEeeccCCC--cccH
Confidence            3333221    246789999999999999995   5677788 67789999999 688 899999999999986  4578


Q ss_pred             HHHHHhHHHHHHHHHH
Q psy8791         370 AAVAGQCKVVYDNLSA  385 (706)
Q Consensus       370 ~~a~~qg~~~a~ni~~  385 (706)
                      ..|..||+.+|+||..
T Consensus       334 ~~A~~~g~~aa~~i~~  349 (478)
T 1v59_A          334 HKAEEEGIAAVEMLKT  349 (478)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            8999999999999974

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.94  E-value=1.7e-26  Score=253.76  Aligned_cols=280  Identities=18%  Similarity=0.214  Sum_probs=193.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------ccccc---------c---cCcc------ccCcc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMFTL---------I---GGGM------KKLSD   85 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~~~---------~---~~~~------~~~~~   85 (706)
                      +||+|||||+||++||.+|++.  +.+|+|||+++.....       |....         .   ..+.      .+...
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQL--GMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA   79 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHC--CCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence            6899999999999999999998  8999999999753211       11000         0   0000      00000


Q ss_pred             ccc-----------cccccc-CCCcEEEEceeEEEEcCCCEEEeC-CCeEEEecEEEEccccccccCCCCCCcccccccc
Q psy8791          86 SRR-----------PMKSVL-PSGATWVKDKIVSFDPENNRVRTQ-AGSEISYEYMIVASGIQMYYDRVKGPSALINALG  152 (706)
Q Consensus        86 ~~~-----------~~~~~~-~~~v~~i~~~v~~id~~~~~v~~~-~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~  152 (706)
                      +..           .+...+ ..+++++.+++..+++  +.+.+. +|.++.||+||+|||+.+..|+++|.+  +    
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~--~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~--~----  151 (455)
T 2yqu_A           80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSE--RKVLVEETGEELEARYILIATGSAPLIPPWAQVD--Y----  151 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSS--SEEEETTTCCEEEEEEEEECCCEEECCCTTBCCC--S----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCC--c----
Confidence            000           011222 2579999888776654  444443 567899999999999998888777721  0    


Q ss_pred             cccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhcc-CCCEEEecCCCCeeeCChh
Q psy8791         153 HCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQ-SGPVLYTFPATPIKCGGAP  231 (706)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~g~~vv~~~~~~v~~~g~~  231 (706)
                                       .                    .+   ++.+.+       .... .++.+       +.++|++
T Consensus       152 -----------------~--------------------~v---~~~~~~-------~~~~~~~~~v-------vIiGgG~  177 (455)
T 2yqu_A          152 -----------------E--------------------RV---VTSTEA-------LSFPEVPKRL-------IVVGGGV  177 (455)
T ss_dssp             -----------------S--------------------SE---ECHHHH-------TCCSSCCSEE-------EEECCSH
T ss_pred             -----------------C--------------------cE---echHHh-------hccccCCCeE-------EEECCCH
Confidence                             0                    00   011110       0010 11111       2234443


Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceE
Q psy8791         232 MKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTER  309 (706)
Q Consensus       232 ~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~  309 (706)
                      .  +......+++.|.    +|+++++.+.+++  ++.+.+.+.+.+++.||+++++++|++++.+++.+.+. +++|++
T Consensus       178 ~--g~e~A~~l~~~g~----~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~-~~~g~~  250 (455)
T 2yqu_A          178 I--GLELGVVWHRLGA----EVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVE-LEGGEV  250 (455)
T ss_dssp             H--HHHHHHHHHHTTC----EEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEE-ETTSCE
T ss_pred             H--HHHHHHHHHHcCC----EEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEE-ECCCeE
Confidence            2  2223345666664    5999999988876  68889999999999999999999999998765555543 346789


Q ss_pred             EeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHH
Q psy8791         310 LPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSA  385 (706)
Q Consensus       310 i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~  385 (706)
                      +++|.||+|+|.+|+..   +...++ .+++|++.||+ +++ |+.|+|||+|||+..  ++++..|..||+.+|+||..
T Consensus       251 i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~-~~~-t~~~~iya~GD~~~~--~~~~~~A~~~g~~aa~~i~~  326 (455)
T 2yqu_A          251 LEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDE-HLR-TRVPHIYAIGDVVRG--PMLAHKASEEGIAAVEHMVR  326 (455)
T ss_dssp             EEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCT-TSB-CSSTTEEECGGGSSS--CCCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECC-Ccc-cCCCCEEEEecCCCC--ccCHHHHHHhHHHHHHHHcC
Confidence            99999999999999953   455677 56789999999 688 899999999999986  45788999999999999974

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.94  E-value=9.1e-26  Score=247.92  Aligned_cols=274  Identities=19%  Similarity=0.213  Sum_probs=188.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-------ccc---------cc---cc----CccccCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-------PMF---------TL---IG----GGMKKLSD   85 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~---------~~---~~----~~~~~~~~   85 (706)
                      .++||+|||||+||++||.+|++.  +++|+|||++.. ...       |..         ..   ..    .+.. ...
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~-GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~-~~~   79 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQAL-GGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGIS-VAS   79 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCC-CCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEccCCC-CCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcc-cCC
Confidence            357999999999999999999999  899999999542 111       110         00   00    0110 000


Q ss_pred             cccc------------------ccccc-CCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCC-CCCCc
Q psy8791          86 SRRP------------------MKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDR-VKGPS  145 (706)
Q Consensus        86 ~~~~------------------~~~~~-~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~-~~g~~  145 (706)
                      ...+                  +..++ ..+++++.+++..++  .++|.+++ .++.||+||+|||+.+..|+ +|. +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~-~  155 (458)
T 1lvl_A           80 PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL-G  155 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-B
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-c
Confidence            0011                  11222 368999998887776  46788876 78999999999999886554 332 0


Q ss_pred             ccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCe
Q psy8791         146 ALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPI  225 (706)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v  225 (706)
                        .                     ..++       ..+.+..                     .. ...++        +
T Consensus       156 --~---------------------~v~~-------~~~~~~~---------------------~~-~~~~v--------v  175 (458)
T 1lvl_A          156 --G---------------------PVIS-------STEALAP---------------------KA-LPQHL--------V  175 (458)
T ss_dssp             --T---------------------TEEC-------HHHHTCC---------------------SS-CCSEE--------E
T ss_pred             --C---------------------cEec-------HHHHhhh---------------------hc-cCCeE--------E
Confidence              0                     0000       1111110                     00 11111        2


Q ss_pred             eeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe
Q psy8791         226 KCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS  303 (706)
Q Consensus       226 ~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~  303 (706)
                      .++|++.  +......+++.|.    +|+++++.+.+++  ++.+.+.+.+.+++.||+++++++|.+++. ++ +.+. 
T Consensus       176 ViGgG~~--g~e~A~~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~-v~v~-  246 (458)
T 1lvl_A          176 VVGGGYI--GLELGIAYRKLGA----QVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN-GC-LLAN-  246 (458)
T ss_dssp             EECCSHH--HHHHHHHHHHHTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET-TE-EEEE-
T ss_pred             EECcCHH--HHHHHHHHHHCCC----eEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe-CC-EEEE-
Confidence            2344432  2233345666664    5999999998886  688899999999999999999999999987 43 5554 


Q ss_pred             CCCc--eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHH
Q psy8791         304 EDKT--ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK  377 (706)
Q Consensus       304 ~~~g--~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~  377 (706)
                      .++|  +++++|.||+|+|.+|+..   +...++ .+++ +|.||+ +++ |+.|+|||+|||+..  ++++..|..||+
T Consensus       247 ~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~-~~~-t~~~~Iya~GD~~~~--~~~~~~A~~~g~  321 (458)
T 1lvl_A          247 DGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDE-RCQ-TSMHNVWAIGDVAGE--PMLAHRAMAQGE  321 (458)
T ss_dssp             CSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCT-TCB-CSSTTEEECGGGGCS--SCCHHHHHHHHH
T ss_pred             ECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECC-CCc-CCCCCEEEeeccCCC--cccHHHHHHHHH
Confidence            3345  6899999999999999953   466777 4556 899999 688 899999999999986  458889999999


Q ss_pred             HHHHHHH
Q psy8791         378 VVYDNLS  384 (706)
Q Consensus       378 ~~a~ni~  384 (706)
                      .+|+||.
T Consensus       322 ~aa~~i~  328 (458)
T 1lvl_A          322 MVAEIIA  328 (458)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999995

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=5.8e-26  Score=241.35  Aligned_cols=287  Identities=17%  Similarity=0.162  Sum_probs=179.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc------------Ccccc-cccCccccC--------ccccc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY------------QPMFT-LIGGGMKKL--------SDSRR   88 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~------------~p~~~-~~~~~~~~~--------~~~~~   88 (706)
                      +++|+|||||++|+++|..|+++  +++|+|||+++....            .|... .........        ..+..
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRS--GLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA   80 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHS--SCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence            46899999999999999999998  899999999875311            11100 000000000        11111


Q ss_pred             ccccccC-CCcEEEE-ceeEEEEcCCCE---EEeCCCeEEEecEEEEcccc--ccccCCCCCCccccccccccccccccc
Q psy8791          89 PMKSVLP-SGATWVK-DKIVSFDPENNR---VRTQAGSEISYEYMIVASGI--QMYYDRVKGPSALINALGHCDLVRSFV  161 (706)
Q Consensus        89 ~~~~~~~-~~v~~i~-~~v~~id~~~~~---v~~~~g~~~~yd~lviAtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~  161 (706)
                      .+.++.. .++++.. .+|++++.+.+.   |.++++ ++.||+||+|||.  .+..|.+||.+                
T Consensus        81 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~----------------  143 (357)
T 4a9w_A           81 YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLE----------------  143 (357)
T ss_dssp             HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGG----------------
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCcc----------------
Confidence            1222222 5777766 689999988776   667777 8999999999995  56668888832                


Q ss_pred             ccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHH
Q psy8791         162 TFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEY  241 (706)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~  241 (706)
                          .+..+.++...    +              .+.          ..+.+.+++        .++|+.. ...++ ..
T Consensus       144 ----~~~~~~~~~~~----~--------------~~~----------~~~~~~~v~--------VvG~G~~-g~e~a-~~  181 (357)
T 4a9w_A          144 ----SFAGIQLHSAH----Y--------------STP----------APFAGMRVA--------IIGGGNS-GAQIL-AE  181 (357)
T ss_dssp             ----GCCSEEEEGGG----C--------------CCS----------GGGTTSEEE--------EECCSHH-HHHHH-HH
T ss_pred             ----ccCCcEEEecc----C--------------CCh----------hhcCCCEEE--------EECCCcC-HHHHH-HH
Confidence                01111111100    0              000          011222222        2333322 12222 22


Q ss_pred             HHHcCCCCCcEEEEEeCC-CcCCC----chhHHHHHHHHHH----------------------------hCCceEEcCCc
Q psy8791         242 LRKHKKRDAAKLTYCTGM-GVLFP----SPFYAEKIHDILI----------------------------GRGVDVHKGKA  288 (706)
Q Consensus       242 l~~~g~~~~~~v~l~~~~-~~~~~----~~~~~~~~~~~l~----------------------------~~gV~v~~~~~  288 (706)
                      +.+.+     +++++++. +.+++    .+.+.+.+.+.+.                            +.|+ +..+..
T Consensus       182 l~~~~-----~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~  255 (357)
T 4a9w_A          182 VSTVA-----ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPP  255 (357)
T ss_dssp             HTTTS-----EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCCHHHHHHHHTTC-CCEECC
T ss_pred             HHhhC-----CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecC
Confidence            33333     48888876 44444    1233333333322                            3454 555667


Q ss_pred             eEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCceeeCccccccCCCCCEEEcc--ccCCCCC
Q psy8791         289 LVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVNVDKATLQHVKYSNVFAIG--DCSNLPT  365 (706)
Q Consensus       289 v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~G--D~~~~~~  365 (706)
                      +.+++.++  +.   +++|+++++|+||+|+|++|+ +++.+.++.+++|++.||+++++.++.|||||+|  ||+. +.
T Consensus       256 v~~~~~~~--v~---~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~-~~  329 (357)
T 4a9w_A          256 PARFSPTG--MQ---WADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWNG-MA  329 (357)
T ss_dssp             CSEEETTE--EE---CTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTEEECSSCGGGS-TT
T ss_pred             cceEeCCe--eE---ECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCccccCCcccCCCCCCeEEeccccccc-cc
Confidence            77777643  43   348899999999999999999 7787788888899999999335669999999999  5555 34


Q ss_pred             CchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         366 SKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       366 ~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      +++...|..||+.+|+||.+.++|
T Consensus       330 ~~~~~~A~~~g~~~a~~i~~~l~g  353 (357)
T 4a9w_A          330 SATLIGVTRYAREAVRQVTAYCAD  353 (357)
T ss_dssp             CSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHh
Confidence            567778999999999999999988

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.93  E-value=2.7e-25  Score=246.12  Aligned_cols=281  Identities=12%  Similarity=0.088  Sum_probs=190.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc----------------------cccc--cCc--cccC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM----------------------FTLI--GGG--MKKL   83 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~----------------------~~~~--~~~--~~~~   83 (706)
                      ++||+|||||+||++||.+|++.  |.+|+|||+++. ...+.                      ++.+  ..+  ..+.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~--G~~V~liE~~~~-GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   84 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH--TDKVVLIEGGAY-GTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG   84 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--CSCEEEEESSCS-SCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCC-CCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence            47999999999999999999998  899999999762 11110                      0000  000  0000


Q ss_pred             cccccccc------------cccC-CCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccc
Q psy8791          84 SDSRRPMK------------SVLP-SGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINA  150 (706)
Q Consensus        84 ~~~~~~~~------------~~~~-~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~  150 (706)
                      ..+...+.            .+.. .+++++.++..-.+  .++|.++++.++.||+||+|||+.+..|++++..     
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~-----  157 (492)
T 3ic9_A           85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAA-----  157 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--TTEEEETTTEEEEEEEEEECCCEECCCCHHHHTT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--CCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCcc-----
Confidence            00000000            0111 24456666665554  4678888888999999999999998876655410     


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                                     ..       .+   ++.+.+..    +...  ++.       .+.++|+
T Consensus       158 -------------------------------~~-------~v---~t~~~~~~----~~~~--~k~-------vvViGgG  183 (492)
T 3ic9_A          158 -------------------------------GS-------RL---LTNDNLFE----LNDL--PKS-------VAVFGPG  183 (492)
T ss_dssp             -------------------------------GG-------GE---ECHHHHTT----CSSC--CSE-------EEEESSC
T ss_pred             -------------------------------CC-------cE---EcHHHHhh----hhhc--CCe-------EEEECCC
Confidence                                           00       00   01111000    0011  111       1223444


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC-CCc
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE-DKT  307 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~-~~g  307 (706)
                      ..  +......+.+.|.    +|+++++.+.+++  ++++.+.+++.|++. |++++++.|++++.+++.+.+... .+|
T Consensus       184 ~i--g~E~A~~l~~~g~----~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G  256 (492)
T 3ic9_A          184 VI--GLELGQALSRLGV----IVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSG  256 (492)
T ss_dssp             HH--HHHHHHHHHHTTC----EEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTC
T ss_pred             HH--HHHHHHHHHHcCC----eEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCC
Confidence            22  2333345666664    4999999998876  688999999999998 999999999999876554544332 256


Q ss_pred             --eEEeecEEEECCCCCchhh---hhcCCC-CCCCCceeeC-ccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHH
Q psy8791         308 --ERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGYVNVD-KATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVY  380 (706)
Q Consensus       308 --~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~i~vd-~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a  380 (706)
                        +++++|.||+|+|.+|+..   +...++ .+++|++.|| + +++ |+.|+|||+|||+..  ++++..|..||+++|
T Consensus       257 ~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~~-t~~~~IyA~GD~~~~--~~~~~~A~~~g~~aa  332 (492)
T 3ic9_A          257 QKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDEL-TLQ-TSVDHIFVAGDANNT--LTLLHEAADDGKVAG  332 (492)
T ss_dssp             CEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTT-TCB-CSSTTEEECGGGGTS--SCSHHHHHHHHHHHH
T ss_pred             ceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcc-ccc-CCCCCEEEEEecCCC--CccHHHHHHHHHHHH
Confidence              7899999999999999954   566788 7889999999 6 687 899999999999986  458889999999999


Q ss_pred             HHHHH
Q psy8791         381 DNLSA  385 (706)
Q Consensus       381 ~ni~~  385 (706)
                      .||..
T Consensus       333 ~~i~~  337 (492)
T 3ic9_A          333 TNAGA  337 (492)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            99975

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.93  E-value=9e-25  Score=243.38  Aligned_cols=291  Identities=15%  Similarity=0.151  Sum_probs=193.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCccc--CcccccccCc-cccCcccccccccc-cCCCcEEEEc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYY--QPMFTLIGGG-MKKLSDSRRPMKSV-LPSGATWVKD  103 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~--~p~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~i~~  103 (706)
                      ...++|+|||||+||++||.+|++.  |++|+|||+.....+  .+........ ......+...+.+. ...+++++.+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~--G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~  287 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARK--GIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDS  287 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhC--CCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcC
Confidence            3467999999999999999999998  899999997421111  0111111100 00111122222222 2468998886


Q ss_pred             -eeEEEEcC-----CCEEEeCCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccC
Q psy8791         104 -KIVSFDPE-----NNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRR  177 (706)
Q Consensus       104 -~v~~id~~-----~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (706)
                       +|+.++++     ...|.+++|.++.||+||+|||+.+..+.+||.+  +                  |..+.      
T Consensus       288 ~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~--~------------------~~~~~------  341 (521)
T 1hyu_A          288 QSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGED--Q------------------YRTKG------  341 (521)
T ss_dssp             CCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTT--T------------------TTTTT------
T ss_pred             CEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChh--h------------------hcCce------
Confidence             99999864     3467888888999999999999998888889831  0                  00000      


Q ss_pred             ccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEe
Q psy8791         178 PSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCT  257 (706)
Q Consensus       178 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~  257 (706)
                                    +......+.        ..+.+.+++        .++|+.. ... ....+.+.+.    +|++++
T Consensus       342 --------------v~~~~~~~~--------~~~~~k~V~--------ViGgG~~-g~E-~A~~L~~~g~----~Vtlv~  385 (521)
T 1hyu_A          342 --------------VTYCPHCDG--------PLFKGKRVA--------VIGGGNS-GVE-AAIDLAGIVE----HVTLLE  385 (521)
T ss_dssp             --------------EECCTTCCG--------GGGBTSEEE--------EECCSHH-HHH-HHHHHHHHBS----EEEEEC
T ss_pred             --------------EEEeecCch--------hhcCCCeEE--------EECCCHH-HHH-HHHHHHhhCC----EEEEEE
Confidence                          000000000        011222222        2333322 122 2234555553    599999


Q ss_pred             CCCcCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCE---EEEEeCCCc--eEEeecEEEECCCCCchh-hhhcC
Q psy8791         258 GMGVLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLANKE---AVFKSEDKT--ERLPYAIMHVTPPMGPVP-ELATS  330 (706)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~---v~~~~~~~g--~~i~~D~vI~a~G~~~~~-~~~~~  330 (706)
                      +.+.+..+    ..+.+.|++ .||++++++.++++..+++.   +.+....+|  .++++|.||+++|.+|+. ++.. 
T Consensus       386 ~~~~l~~~----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-  460 (521)
T 1hyu_A          386 FAPEMKAD----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-  460 (521)
T ss_dssp             SSSSCCSC----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-
T ss_pred             eCcccCcC----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-
Confidence            98887653    345667777 69999999999999875443   444432234  478999999999999995 5554 


Q ss_pred             CC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         331 RL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       331 ~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      .+ ++++|+|.||+ +++ |+.|||||+|||+..+ .+.+..|..||+.+|.||.+.+.++
T Consensus       461 ~l~~~~~G~I~Vd~-~~~-ts~p~VfA~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~L~~~  518 (521)
T 1hyu_A          461 ALERNRMGEIIIDA-KCE-TSVKGVFAAGDCTTVP-YKQIIIATGEGAKASLSAFDYLIRT  518 (521)
T ss_dssp             TSCBCTTSCBCCCT-TCB-CSSTTEEECSTTBCCS-SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCcEEeCC-CCC-CCCCCEEEeecccCCC-cceeeehHHhHHHHHHHHHHHHHhh
Confidence            45 67889999999 688 8999999999999875 3678899999999999999988654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.93  E-value=5.1e-24  Score=242.08  Aligned_cols=286  Identities=18%  Similarity=0.218  Sum_probs=188.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC-CCc---cc--C---------cccccc-------------cCc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT-DDH---YY--Q---------PMFTLI-------------GGG   79 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~-~~~---~~--~---------p~~~~~-------------~~~   79 (706)
                      ...+||+|||||+||++||.+|++.  +++|+|||+. +..   .+  .         |.....             ..+
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~--g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g  182 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY--GAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG  182 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccEEEECCCccHHHHHHHHHhC--CCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence            3467999999999999999999998  8999999973 210   00  0         100000             000


Q ss_pred             cccCcc-ccccc------------------c-cccCCCcEEEEceeEEEEcCCCEEEeCCC--eEEEecEEEEccccccc
Q psy8791          80 MKKLSD-SRRPM------------------K-SVLPSGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMY  137 (706)
Q Consensus        80 ~~~~~~-~~~~~------------------~-~~~~~~v~~i~~~v~~id~~~~~v~~~~g--~~~~yd~lviAtG~~~~  137 (706)
                      ...... ...++                  . .+...+++++.+.+..+++....+...+|  .++.||+||+|||+.+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~  262 (598)
T 2x8g_A          183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPK  262 (598)
T ss_dssp             CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEEC
T ss_pred             ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCC
Confidence            000000 00000                  0 11235899998888888876545555566  46899999999999999


Q ss_pred             cCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEE
Q psy8791         138 YDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVL  217 (706)
Q Consensus       138 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~v  217 (706)
                      .|++||.+  ++..                     .       ..+.+.                     + ....+++ 
T Consensus       263 ~p~i~G~~--~~~~---------------------~-------~~~~~~---------------------~-~~~~~~v-  289 (598)
T 2x8g_A          263 YPEIPGAV--EYGI---------------------T-------SDDLFS---------------------L-PYFPGKT-  289 (598)
T ss_dssp             CCSSTTHH--HHCE---------------------E-------HHHHTT---------------------C-SSCCCSE-
T ss_pred             CCCCCCcc--cceE---------------------c-------HHHHhh---------------------C-ccCCCEE-
Confidence            88899821  0000                     0       000000                     0 0111222 


Q ss_pred             EecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeC-
Q psy8791         218 YTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDL-  294 (706)
Q Consensus       218 v~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-  294 (706)
                             +.++|+..  +......+.+.|..    |+++++. .+++  ++.+.+.+.+.|++.||++++++.+.++.. 
T Consensus       290 -------vViGgG~~--g~E~A~~l~~~g~~----Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~  355 (598)
T 2x8g_A          290 -------LVIGASYV--ALECAGFLASLGGD----VTVMVRS-ILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQL  355 (598)
T ss_dssp             -------EEECCSHH--HHHHHHHHHHTTCC----EEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEE
T ss_pred             -------EEECCCHH--HHHHHHHHHHcCCE----EEEEECC-cCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEec
Confidence                   22344422  22333456667643    9999887 5554  678889999999999999999988777742 


Q ss_pred             ------C--CCEEEEE-eCCCceEEe--ecEEEECCCCCchh-h--hhcCCC-CCCCCceeeCccccccCCCCCEEEccc
Q psy8791         295 ------A--NKEAVFK-SEDKTERLP--YAIMHVTPPMGPVP-E--LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGD  359 (706)
Q Consensus       295 ------~--~~~v~~~-~~~~g~~i~--~D~vI~a~G~~~~~-~--~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD  359 (706)
                            +  .+.+.+. ...+|++++  +|.||+|+|++|+. +  +...++ .+++|+|.||+ +++ |+.|+|||+||
T Consensus       356 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~-~~~-ts~~~VyA~GD  433 (598)
T 2x8g_A          356 KVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTD-DEQ-TTVSNVYAIGD  433 (598)
T ss_dssp             ECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCT-TSB-CSSTTEEECGG
T ss_pred             cccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCC-CCc-CCCCCEEEEee
Confidence                  1  1333322 123566554  99999999999995 4  345677 67889999999 687 89999999999


Q ss_pred             cCCCCCCchHHHHHHhHHHHHHHHHH
Q psy8791         360 CSNLPTSKTAAAVAGQCKVVYDNLSA  385 (706)
Q Consensus       360 ~~~~~~~~~~~~a~~qg~~~a~ni~~  385 (706)
                      |+... ++++..|..||+.+|+||..
T Consensus       434 ~~~~~-~~~~~~A~~~g~~aa~~i~~  458 (598)
T 2x8g_A          434 INAGK-PQLTPVAIQAGRYLARRLFA  458 (598)
T ss_dssp             GBTTS-CCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCC-CccHHHHHHhHHHHHHHHhc
Confidence            97542 56888999999999999964

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.93  E-value=2.3e-24  Score=230.38  Aligned_cols=288  Identities=16%  Similarity=0.204  Sum_probs=182.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC-----------cccCcccccccCcc-----------------
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD-----------HYYQPMFTLIGGGM-----------------   80 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~-----------~~~~p~~~~~~~~~-----------------   80 (706)
                      +++|+|||||+||+++|.+|++.  ++ +|+|||+++.           +.+.|.+.....+.                 
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~--g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDF--GITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHc--CCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence            46899999999999999999998  78 9999999860           00111111000000                 


Q ss_pred             ---ccCccccccccccc-CCCcEEEE-ceeEEEEcCC--CEEEeCCCeEEEecEEEEccccccccCCCCCCccccccccc
Q psy8791          81 ---KKLSDSRRPMKSVL-PSGATWVK-DKIVSFDPEN--NRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINALGH  153 (706)
Q Consensus        81 ---~~~~~~~~~~~~~~-~~~v~~i~-~~v~~id~~~--~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~  153 (706)
                         .....+...+..+. ..+++++. .+|++++++.  ..|.+.++ ++.||+||+|||+.+. |.+|+ +   +.   
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~ip~-~---~~---  152 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PKKPF-K---YG---  152 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCCCS-S---SC---
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCCCC-C---ce---
Confidence               00000111122222 25788876 4789998764  35666666 6999999999998764 45554 1   00   


Q ss_pred             ccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHH
Q psy8791         154 CDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMK  233 (706)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~  233 (706)
                                        ++.       ...           .+.          ..+.+.++++        ++|+.. 
T Consensus       153 ------------------~~~-------~~~-----------~~~----------~~~~~~~vvV--------vG~G~~-  177 (369)
T 3d1c_A          153 ------------------IHY-------SEI-----------EDF----------DNFNKGQYVV--------IGGNES-  177 (369)
T ss_dssp             ------------------EEG-------GGC-----------SCG----------GGSCSSEEEE--------ECCSHH-
T ss_pred             ------------------ech-------hhc-----------CCh----------hhcCCCEEEE--------ECCCcC-
Confidence                              000       000           000          0122222222        333322 


Q ss_pred             HHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC---------chhHHHHHHHHHHhCC-ceEEcCCceEEEeCCCCEEEEEe
Q psy8791         234 AVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP---------SPFYAEKIHDILIGRG-VDVHKGKALVEIDLANKEAVFKS  303 (706)
Q Consensus       234 ~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~---------~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~~v~~~~  303 (706)
                       +......+.+.+.    +|+++++.+.+++         ++.+.+.+++.|++.| |++++++.|.+++.+++.+.+. 
T Consensus       178 -g~e~a~~l~~~g~----~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~-  251 (369)
T 3d1c_A          178 -GFDAAYQLAKNGS----DIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHIS-  251 (369)
T ss_dssp             -HHHHHHHHHHTTC----EEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEE-
T ss_pred             -HHHHHHHHHhcCC----eEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEE-
Confidence             2222334555553    5999998877652         3566788889999997 9999999999996433433332 


Q ss_pred             CCCceEEe-ecEEEECCCCCchh-hhhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCc--hHHHHHHhHHHH
Q psy8791         304 EDKTERLP-YAIMHVTPPMGPVP-ELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK--TAAAVAGQCKVV  379 (706)
Q Consensus       304 ~~~g~~i~-~D~vI~a~G~~~~~-~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~--~~~~a~~qg~~~  379 (706)
                      +.+|++++ +|.+|+|+|++|+. ++.+.++.+++|++.||+ .++.|++|||||+|||+..+...  ....+.+||+++
T Consensus       252 ~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~-~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~  330 (369)
T 3d1c_A          252 FDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTT-HDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVL  330 (369)
T ss_dssp             ESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCT-TSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHH
T ss_pred             ecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEech-hhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHH
Confidence            24677665 59999999999996 666544557789999998 55669999999999999875543  345678899999


Q ss_pred             HHHHHHHHcCC
Q psy8791         380 YDNLSAVMKNR  390 (706)
Q Consensus       380 a~ni~~~l~g~  390 (706)
                      |+||...+...
T Consensus       331 a~~l~~~~~~p  341 (369)
T 3d1c_A          331 AHLLTQREGLP  341 (369)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHhcccCCC
Confidence            99998877544

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.92  E-value=2.2e-25  Score=243.12  Aligned_cols=290  Identities=16%  Similarity=0.090  Sum_probs=182.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccccc-ccCccccCcccccc-cccccCCCcEEEEcee
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTL-IGGGMKKLSDSRRP-MKSVLPSGATWVKDKI  105 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~-~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~v  105 (706)
                      ...++|+|||||+|||+||.+|++.  |++|+|||+++.....  +.+ ++. ...+..+... ...+...+++++.++.
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~--G~~V~v~e~~~~~GG~--l~~gip~-~~~~~~~~~~~~~~l~~~gv~~~~~~~  194 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAK--GYEVHVYDRYDRMGGL--LVYGIPG-FKLEKSVVERRVKLLADAGVIYHPNFE  194 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSCSTH--HHHTSCT-TTSCHHHHHHHHHHHHHTTCEEETTCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCe--eeecCCC-ccCCHHHHHHHHHHHHHCCcEEEeCCE
Confidence            3567999999999999999999999  8999999999864211  111 111 1111122211 2223346888877654


Q ss_pred             EEEEcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         106 VSFDPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      +.     +.++++++ .+.||+||+|||+. +..+.+||.+    ..|                                
T Consensus       195 v~-----~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~----~~g--------------------------------  232 (456)
T 2vdc_G          195 VG-----RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSG----LGN--------------------------------  232 (456)
T ss_dssp             BT-----TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCT----TTT--------------------------------
T ss_pred             ec-----cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCc----CCC--------------------------------
Confidence            32     22334333 35799999999986 6677888821    000                                


Q ss_pred             hcCCCCCcccCCChhHHHHHHH-H-HHh----------ccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcE
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLR-N-LQH----------FQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAK  252 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~-~-l~~----------~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~  252 (706)
                             +..   ......... . +..          ...++.|       ++++|+.. ....+ ..+.+.|..   +
T Consensus       233 -------v~~---a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~V-------vVIGgG~~-a~d~A-~~~~r~Ga~---~  290 (456)
T 2vdc_G          233 -------IVA---ALDYLTTSNKVSLGDTVEAYENGSLNAAGKHV-------VVLGGGDT-AMDCV-RTAIRQGAT---S  290 (456)
T ss_dssp             -------EEE---HHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEE-------EEECSSHH-HHHHH-HHHHHTTCS---E
T ss_pred             -------cEE---HHHHHHHhhhhhcccccccccccccccCCCEE-------EEECCChh-HHHHH-HHHHHcCCC---E
Confidence                   000   000000000 0 000          0112222       22344422 22222 334455532   4


Q ss_pred             EEEEeCCCcC-CCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEe-----------------CCCceEEee
Q psy8791         253 LTYCTGMGVL-FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKS-----------------EDKTERLPY  312 (706)
Q Consensus       253 v~l~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~-----------------~~~g~~i~~  312 (706)
                      |+++++.+.. ++.  .... .+.+++.||++++++.+.+|..+++.  +.+..                 .+++.++++
T Consensus       291 Vtiv~r~~~~~~p~--~~~e-~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~a  367 (456)
T 2vdc_G          291 VKCLYRRDRKNMPG--SQRE-VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQA  367 (456)
T ss_dssp             EEEECSSCSTTCSS--CHHH-HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEEC
T ss_pred             EEEEEeCCccCCCC--CHHH-HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEEC
Confidence            9999988765 441  1112 35677889999999998888753211  12210                 112257999


Q ss_pred             cEEEECCCCCchh---hhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHc
Q psy8791         313 AIMHVTPPMGPVP---ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       313 D~vI~a~G~~~~~---~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~  388 (706)
                      |+||+|+|+.|++   ++...++ ++++|+|.||+++++ |+.|+|||+|||+..+  +++..|+.||+.+|.+|...+.
T Consensus       368 D~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~-Ts~~~VfA~GD~~~g~--~~v~~A~~~G~~aA~~i~~~L~  444 (456)
T 2vdc_G          368 DLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKM-TNMDGVFAAGDIVRGA--SLVVWAIRDGRDAAEGIHAYAK  444 (456)
T ss_dssp             SEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCB-CSSTTEEECGGGGSSC--CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCc-CCCCCEEEeccccCCc--hHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999984   5677788 788999999994477 8999999999999864  5889999999999999999998


Q ss_pred             CCCC
Q psy8791         389 NRAL  392 (706)
Q Consensus       389 g~~~  392 (706)
                      |++.
T Consensus       445 ~~~~  448 (456)
T 2vdc_G          445 AKAE  448 (456)
T ss_dssp             HHHT
T ss_pred             cCCC
Confidence            7543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.92  E-value=2.3e-23  Score=230.70  Aligned_cols=299  Identities=13%  Similarity=0.159  Sum_probs=195.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc--------ccC-------cc--cc-------cc--cCccc--
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--------YYQ-------PM--FT-------LI--GGGMK--   81 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~--------~~~-------p~--~~-------~~--~~~~~--   81 (706)
                      ++|+||||||+||++||.++++.  |.+|+|||+.+..        ...       |.  +.       ..  ....+  
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~--G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi  119 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH--GARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW  119 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT--TCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence            57999999999999999999999  8999999976521        111       10  00       00  00000  


Q ss_pred             cCccccccc------------------cc-ccCCCcEEEEceeEEEEcCCCEEEeC----CCeEEEecEEEEcccccccc
Q psy8791          82 KLSDSRRPM------------------KS-VLPSGATWVKDKIVSFDPENNRVRTQ----AGSEISYEYMIVASGIQMYY  138 (706)
Q Consensus        82 ~~~~~~~~~------------------~~-~~~~~v~~i~~~v~~id~~~~~v~~~----~g~~~~yd~lviAtG~~~~~  138 (706)
                      ..+....++                  .. +...+++++.+...-+++..-.|...    +++++.+|++|||||++|..
T Consensus       120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~  199 (542)
T 4b1b_A          120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHI  199 (542)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECC
T ss_pred             ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCC
Confidence            001111111                  11 12368999998888777654344333    33578999999999999987


Q ss_pred             CCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEE
Q psy8791         139 DRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLY  218 (706)
Q Consensus       139 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv  218 (706)
                      |+.++.+                                    .+.          .++.+.+.    .+..++      
T Consensus       200 P~~~~~~------------------------------------~~~----------~~ts~~~l----~l~~lP------  223 (542)
T 4b1b_A          200 PDDVEGA------------------------------------KEL----------SITSDDIF----SLKKDP------  223 (542)
T ss_dssp             CSSSBTH------------------------------------HHH----------CBCHHHHT----TCSSCC------
T ss_pred             CCcccCC------------------------------------Ccc----------ccCchhhh----ccccCC------
Confidence            7544410                                    000          01111111    011122      


Q ss_pred             ecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC
Q psy8791         219 TFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN  296 (706)
Q Consensus       219 ~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~  296 (706)
                         ..-+.++|+.  +++.....+++.|..    |+++.+. ++++  ++++.+.+++.|++.||+++++..+.+++..+
T Consensus       224 ---~~lvIIGgG~--IGlE~A~~~~~lG~~----VTii~~~-~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~  293 (542)
T 4b1b_A          224 ---GKTLVVGASY--VALECSGFLNSLGYD----VTVAVRS-IVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD  293 (542)
T ss_dssp             ---CSEEEECCSH--HHHHHHHHHHHHTCC----EEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET
T ss_pred             ---ceEEEECCCH--HHHHHHHHHHhcCCe----EEEeccc-ccccccchhHHHHHHHHHHhhcceeecceEEEEEEecC
Confidence               2223344442  233334467788854    8888764 5555  78999999999999999999999999998877


Q ss_pred             CEEEEEeCCCceEEeecEEEECCCCCchhh---hhcCCC-CCCCCc-eeeCccccccCCCCCEEEccccCCCCCCchHHH
Q psy8791         297 KEAVFKSEDKTERLPYAIMHVTPPMGPVPE---LATSRL-VDQSGY-VNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAA  371 (706)
Q Consensus       297 ~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~---~~~~~l-~~~~G~-i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~  371 (706)
                      +.+.+. .++++++++|.|++|+|.+||..   ++..++ .+.+|. +.+|+ ++| |+.|||||+|||+.. .|.+++.
T Consensus       294 ~~~~v~-~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~-~~~-Ts~p~IyAiGDv~~~-~p~La~~  369 (542)
T 4b1b_A          294 DKILVE-FSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADH-LSC-TNIPSIFAVGDVAEN-VPELAPV  369 (542)
T ss_dssp             TEEEEE-ETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCT-TSB-CSSTTEEECTTSBTT-CCCCHHH
T ss_pred             CeEEEE-EcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccc-ccc-ccCCCeEEeccccCC-chhHHHH
Confidence            666554 34677899999999999999953   344566 455555 46777 566 999999999999864 2468899


Q ss_pred             HHHhHHHHHHHHHHHHcCCCCCCcccceeeEE
Q psy8791         372 VAGQCKVVYDNLSAVMKNRALPHEYNGYTSCP  403 (706)
Q Consensus       372 a~~qg~~~a~ni~~~l~g~~~~~~~~~~~~~~  403 (706)
                      |..||+++++|+.   .+.+....|.....|+
T Consensus       370 A~~eg~~aa~~i~---g~~~~~~d~~~iP~~v  398 (542)
T 4b1b_A          370 AIKAGEILARRLF---KDSDEIMDYSYIPTSI  398 (542)
T ss_dssp             HHHHHHHHHHHHH---SCCCCCCCCSSCCEEE
T ss_pred             HHHHHHHHHHHHh---cCCCcccCCCCCceEE
Confidence            9999999999995   3333334555544443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.89  E-value=4.7e-24  Score=245.72  Aligned_cols=278  Identities=17%  Similarity=0.129  Sum_probs=179.8

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccccc-CC-CcEEEEc
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PS-GATWVKD  103 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~i~~  103 (706)
                      +....++|||||||+|||+||..|+++  |++|+|||+++.....+.......+......+...+.... .. ++++..+
T Consensus       387 ~~~~~~~VvIIGgG~AGl~aA~~La~~--G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~  464 (690)
T 3k30_A          387 AKESDARVLVVGAGPSGLEAARALGVR--GYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRE  464 (690)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESS
T ss_pred             cccccceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEEC
Confidence            445568999999999999999999999  9999999999865544332222222222222222222222 23 6776553


Q ss_pred             eeEEEEcCCCEEEeCCCeEEEecEEEEccccccc--------cCCCCCCcccccccccccccccccccCccCCccccccc
Q psy8791         104 KIVSFDPENNRVRTQAGSEISYEYMIVASGIQMY--------YDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFL  175 (706)
Q Consensus       104 ~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (706)
                      +         .+...++.++.||+||+|||+.+.        .+.+||.+                              
T Consensus       465 ~---------~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~------------------------------  505 (690)
T 3k30_A          465 S---------PMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAE------------------------------  505 (690)
T ss_dssp             C---------CCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCT------------------------------
T ss_pred             C---------eecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCC------------------------------
Confidence            2         133334456789999999999854        45566621                              


Q ss_pred             cCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeC--ChhHHHHHHHHHHHHHcCCCCCcEE
Q psy8791         176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCG--GAPMKAVLIGDEYLRKHKKRDAAKL  253 (706)
Q Consensus       176 ~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~--g~~~~~~~~~~~~l~~~g~~~~~~v  253 (706)
                             .    .  .+   ++...   ..+.  ....++.++       .++  |+.  .+......+.+.|.    +|
T Consensus       506 -------~----~--~v---~~~~~---~l~~--~~~~g~~Vv-------ViG~ggG~--~g~e~A~~L~~~g~----~V  551 (690)
T 3k30_A          506 -------G----M--QV---LGPDD---LFAG--RLPDGKKVV-------VYDDDHYY--LGGVVAELLAQKGY----EV  551 (690)
T ss_dssp             -------T----S--EE---ECHHH---HHTT--CCCSSSEEE-------EEECSCSS--HHHHHHHHHHHTTC----EE
T ss_pred             -------C----C--cE---EcHHH---HhCC--CCCCCCEEE-------EEcCCCCc--cHHHHHHHHHhCCC----ee
Confidence                   0    0  00   11111   0000  112222222       122  221  12333445666664    59


Q ss_pred             EEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcC
Q psy8791         254 TYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       254 ~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      +++++.+.+++   ++.....+.+.|+++||+++++++|++++.++..+..+.+++++++++|.||+|+|++|+..+...
T Consensus       552 tlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~  631 (690)
T 3k30_A          552 SIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLD  631 (690)
T ss_dssp             EEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHH
T ss_pred             EEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHH
Confidence            99999888765   356678889999999999999999999987653333323446778999999999999999544321


Q ss_pred             CCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         331 RLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       331 ~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                       + +..+.         .|+.|+|||+|||+..   +....|..||+.+|.||.+.+.+++.
T Consensus       632 -l-~~~~~---------~t~~~~VyaiGD~~~~---~~~~~A~~~g~~aa~~i~~~l~g~~~  679 (690)
T 3k30_A          632 -L-VARRD---------AGEIASVRGIGDAWAP---GTIAAAVWSGRRAAEEFDAVLPSNDE  679 (690)
T ss_dssp             -H-HHHHH---------HTSCSEEEECGGGTSC---BCHHHHHHHHHHHHHHTTCCCCCTTS
T ss_pred             -H-hhhhc---------ccCCCCEEEEeCCCch---hhHHHHHHHHHHHHHHHHhhccCCCC
Confidence             1 11111         3788999999999984   45667999999999999988888765

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.89  E-value=6.3e-23  Score=227.03  Aligned_cols=254  Identities=11%  Similarity=0.098  Sum_probs=168.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccc-cccCccc-cCccccccc-ccccCCCcEEEE-ceeE
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFT-LIGGGMK-KLSDSRRPM-KSVLPSGATWVK-DKIV  106 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~-~~~~~~~-~~~~~~~~~-~~~~~~~v~~i~-~~v~  106 (706)
                      +||+|||||+||++||.+|++.   ++|+|||++++..+..... ....+.. ...++...+ ..+ ..++++.. .+|.
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~  184 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSAL  184 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEEC
T ss_pred             CCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEE
Confidence            5899999999999999999987   8999999998754332210 0000100 111121121 222 45777654 6788


Q ss_pred             EEEcCCCEEEe---CCCe--EEEecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccch
Q psy8791         107 SFDPENNRVRT---QAGS--EISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGL  181 (706)
Q Consensus       107 ~id~~~~~v~~---~~g~--~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (706)
                      +++.+.+.+.+   ++++  .+.||+||+|||+.+..+++||.+                                   +
T Consensus       185 ~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~-----------------------------------~  229 (493)
T 1y56_A          185 GVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENND-----------------------------------M  229 (493)
T ss_dssp             CCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTT-----------------------------------S
T ss_pred             EEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCC-----------------------------------C
Confidence            88887764433   4453  689999999999999888888832                                   0


Q ss_pred             hhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCc
Q psy8791         182 QEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV  261 (706)
Q Consensus       182 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~  261 (706)
                            +  .+   +....+....+......+.+++        .++|+..     +.                      
T Consensus       230 ------~--gv---~~~~~~~~~~~~~~~~~~~~vv--------ViGgG~~-----gl----------------------  263 (493)
T 1y56_A          230 ------P--GV---FRRDFALEVMNVWEVAPGRKVA--------VTGSKAD-----EV----------------------  263 (493)
T ss_dssp             ------T--TE---EEHHHHHHHHHTSCBCSCSEEE--------EESTTHH-----HH----------------------
T ss_pred             ------C--CE---EEcHHHHHHHHhcccCCCCEEE--------EECCCHH-----HH----------------------
Confidence                  0  11   1111111111111011111111        1233311     11                      


Q ss_pred             CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCC---CCCCC
Q psy8791         262 LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRL---VDQSG  337 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l---~~~~G  337 (706)
                                 ++.+++.||++++++.|.+++.+++ +..+.+++|+++++|.||+++|.+|+. ++..+++   .+++|
T Consensus       264 -----------e~~l~~~GV~v~~~~~v~~i~~~~~-v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g  331 (493)
T 1y56_A          264 -----------IQELERWGIDYVHIPNVKRVEGNEK-VERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGY  331 (493)
T ss_dssp             -----------HHHHHHHTCEEEECSSEEEEECSSS-CCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTE
T ss_pred             -----------HHHHHhCCcEEEeCCeeEEEecCCc-eEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCc
Confidence                       1567788999999999999987654 222234578899999999999999995 6677776   25689


Q ss_pred             cee-eCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHH
Q psy8791         338 YVN-VDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVM  387 (706)
Q Consensus       338 ~i~-vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l  387 (706)
                      ++. ||+ +++  +.|+|||+|||+..+   .+..|..||+.+|.||...+
T Consensus       332 ~i~~vd~-~~~--s~~~vya~GD~~~~~---~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          332 YSPVLDE-YHR--IKDGIYVAGSAVSIK---PHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             EEECCCT-TSE--EETTEEECSTTTCCC---CHHHHHHHHHHHHHHHHHHT
T ss_pred             eeecccc-ccC--cCCCEEEEeccCCcc---CHHHHHHHHHHHHHHHHHHc
Confidence            887 888 687  789999999999863   57789999999999998876

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.89  E-value=5.8e-23  Score=224.69  Aligned_cols=301  Identities=15%  Similarity=0.128  Sum_probs=177.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccccc-CCCcEEEEceeEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVS  107 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~v~~  107 (706)
                      ..++|+|||||+||++||..|++..++++|+|||+++..+.. ....+.......+.+...+.+.+ ..+++++.+... 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~-~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v-   82 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL-VRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV-   82 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH-HHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCce-eecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEE-
Confidence            357999999999999999999998444999999999865321 11111111111222332333333 468888765332 


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEcccccc-ccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhc
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGIQM-YYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD  186 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  186 (706)
                          .+.|++++. .+.||+||+|||+.+ ..+++||.+    .             +..+..+.         +...+.
T Consensus        83 ----~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~----~-------------~gv~~~~~---------~~~~~~  131 (460)
T 1cjc_A           83 ----GRDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEE----L-------------PGVFSARA---------FVGWYN  131 (460)
T ss_dssp             ----TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTT----S-------------TTEEEHHH---------HHHHHT
T ss_pred             ----eeEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCC----C-------------CcEEEHHH---------HHHHhh
Confidence                233544443 468999999999985 668899831    0             00000000         000000


Q ss_pred             CCCCCcccCCChhHHHHHHHHHH-hccCCCEEEecCCCCeeeCChhH--HHHHHHH----------------HHHHHcCC
Q psy8791         187 QPDSGVSTNYSPQYVEKTLRNLQ-HFQSGPVLYTFPATPIKCGGAPM--KAVLIGD----------------EYLRKHKK  247 (706)
Q Consensus       187 ~~~~~v~~~~~~~~~~~~~~~l~-~~~~g~~vv~~~~~~v~~~g~~~--~~~~~~~----------------~~l~~~g~  247 (706)
                      ..         ++    . +.+. .+ .++.+       ++++|+..  +++..+.                +.+++.+.
T Consensus       132 ~~---------~d----~-~~~~~~~-~~~~v-------vVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~  189 (460)
T 1cjc_A          132 GL---------PE----N-RELAPDL-SCDTA-------VILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV  189 (460)
T ss_dssp             TC---------GG----G-TTCCCCT-TSSEE-------EEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC
T ss_pred             cC---------cc----c-cccccCC-CCCEE-------EEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCC
Confidence            00         00    0 0000 11 12222       22344422  2222111                11223332


Q ss_pred             CCCcEEEEEeCCCcC--------------CCc-------hh-----------------HHHHHHHHHHh-----------
Q psy8791         248 RDAAKLTYCTGMGVL--------------FPS-------PF-----------------YAEKIHDILIG-----------  278 (706)
Q Consensus       248 ~~~~~v~l~~~~~~~--------------~~~-------~~-----------------~~~~~~~~l~~-----------  278 (706)
                         .+|+++.+.+.+              ++.       .+                 +.+.+.+.+++           
T Consensus       190 ---~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  266 (460)
T 1cjc_A          190 ---KTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA  266 (460)
T ss_dssp             ---CEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             ---cEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCC
Confidence               159999877654              110       01                 23344455555           


Q ss_pred             ---CCceEEcCCceEEEeCC--C-C--EEEEEe--------------CCCceEEeecEEEECCCCCchhhhhcCCC--CC
Q psy8791         279 ---RGVDVHKGKALVEIDLA--N-K--EAVFKS--------------EDKTERLPYAIMHVTPPMGPVPELATSRL--VD  334 (706)
Q Consensus       279 ---~gV~v~~~~~v~~i~~~--~-~--~v~~~~--------------~~~g~~i~~D~vI~a~G~~~~~~~~~~~l--~~  334 (706)
                         +||+++++..+.+|..+  + .  .+.+..              +++++++++|+||+++|++|++.   .++  .+
T Consensus       267 ~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l---~gl~~~d  343 (460)
T 1cjc_A          267 SASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI---DPSVPFD  343 (460)
T ss_dssp             TCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC---CTTSCCB
T ss_pred             CCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCC---CCCcccc
Confidence               89999999999999765  2 2  233321              11226899999999999999983   455  57


Q ss_pred             CCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         335 QSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       335 ~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      ++|++.||+ ++|+.+.|+|||+|||+..+. .....|..+|..+|.||...+.+..+
T Consensus       344 ~~g~i~vn~-~~rt~~~p~vya~Gd~~~g~~-~~i~~a~~~g~~aa~~i~~~l~~~~~  399 (460)
T 1cjc_A          344 PKLGVVPNM-EGRVVDVPGLYCSGWVKRGPT-GVITTTMTDSFLTGQILLQDLKAGHL  399 (460)
T ss_dssp             TTTTBCCEE-TTEETTCTTEEECTHHHHCTT-CCHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCCeeECC-CCcCcCCCCEEEEEeCCcCCC-ccHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            778899999 688444799999999997542 24568999999999999999876543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.88  E-value=1.3e-22  Score=242.59  Aligned_cols=289  Identities=15%  Similarity=0.102  Sum_probs=178.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  107 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~  107 (706)
                      ..++|+|||||+||++||.+|++.  |+ +|+|||++++..... ...++......+.+......+...+++++.++...
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~--G~~~Vtv~E~~~~~GG~~-~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  262 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLS-TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLS  262 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHH-HHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc--CCCcEEEEeCCCCCCccc-cccCCcccCCHHHHHHHHHHHHHCCcEEEcccEec
Confidence            357999999999999999999999  88 799999987543211 00111101111112222233445789998876542


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEcccc-ccccCCC-CCCcccccccccccccccccccCccCCccccccccCccchhhhh
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGI-QMYYDRV-KGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEAL  185 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  185 (706)
                          .+.++++++.++.||+||+|||+ .+..+++ +|.+..+                                     
T Consensus       263 ----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~-------------------------------------  301 (1025)
T 1gte_A          263 ----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQ-------------------------------------  301 (1025)
T ss_dssp             ----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTT-------------------------------------
T ss_pred             ----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCC-------------------------------------
Confidence                13455555555789999999998 4665543 3421000                                     


Q ss_pred             cCCCCCcccCCChhHHHHHHHHHHh-----------ccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEE
Q psy8791         186 DQPDSGVSTNYSPQYVEKTLRNLQH-----------FQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLT  254 (706)
Q Consensus       186 ~~~~~~v~~~~~~~~~~~~~~~l~~-----------~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~  254 (706)
                           .+   ++...+....+.-..           ..++++        ++++|+..  +......+.+.|.   .+|+
T Consensus       302 -----gv---~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~V--------vVIGgG~~--g~e~A~~~~~~G~---~~Vt  360 (1025)
T 1gte_A          302 -----GF---YTSKDFLPLVAKSSKAGMCACHSPLPSIRGAV--------IVLGAGDT--AFDCATSALRCGA---RRVF  360 (1025)
T ss_dssp             -----TE---EEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEE--------EEECSSHH--HHHHHHHHHHTTC---SEEE
T ss_pred             -----CE---EEhHHHHHHHHhhcccccccccccccccCCcE--------EEECCChH--HHHHHHHHHHcCC---CEEE
Confidence                 00   011111111000000           011222        22344422  2223334556663   2599


Q ss_pred             EEeCCC-cCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE---EEe---CCC-------c--eEEeecEEEEC
Q psy8791         255 YCTGMG-VLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV---FKS---EDK-------T--ERLPYAIMHVT  318 (706)
Q Consensus       255 l~~~~~-~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~---~~~---~~~-------g--~~i~~D~vI~a  318 (706)
                      ++++.+ .+++.  .... .+.+++.||+++++..+.++..+++.+.   +..   .++       |  .++++|+||+|
T Consensus       361 vv~r~~~~~~~~--~~~e-~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A  437 (1025)
T 1gte_A          361 LVFRKGFVNIRA--VPEE-VELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISA  437 (1025)
T ss_dssp             EECSSCGGGCCS--CHHH-HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEEC
T ss_pred             EEEecChhhCCC--CHHH-HHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEEC
Confidence            999887 34431  1111 2467789999999999998875444332   211   011       2  47999999999


Q ss_pred             CCCCch--hhhhc-CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHc
Q psy8791         319 PPMGPV--PELAT-SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       319 ~G~~~~--~~~~~-~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~  388 (706)
                      +|++|+  .++.. .++ .+++|+|.||+.+++ |+.|+|||+|||+..  +.++..|..||+.+|++|...+.
T Consensus       438 ~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~-Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~i~~~L~  508 (1025)
T 1gte_A          438 FGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQ-TSEPWVFAGGDIVGM--ANTTVESVNDGKQASWYIHKYIQ  508 (1025)
T ss_dssp             SCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCB-CSSTTEEECSGGGCS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchhhhhcccCceECCCCCEEECCCCCc-cCCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence            999874  44455 477 778999999974577 899999999999986  44788999999999999998876

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.88  E-value=3.1e-23  Score=226.58  Aligned_cols=299  Identities=15%  Similarity=0.120  Sum_probs=180.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-hcC----CCeEEEEcCCCCcccCcccccccCccccCccccccccccc-CCCcEEEEc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTS-KLG----KGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD  103 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~-~~~----~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~  103 (706)
                      .++|+|||||+||++||..|++ ..+    +++|+|||+.+..+..+. ..+.........+...+.+.+ ..+++|+.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~-~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR-SGVAPDHPKIKSISKQFEKTAEDPRFRFFGN   81 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH-HTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc-cccCCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence            4689999999999999999999 644    789999999986432221 111111222233333333333 468888775


Q ss_pred             eeEEEEcCCCEEEeCCCeEEEecEEEEccccc-cccCCCCCCcccccccccccccccccccCccCCccccccccCccchh
Q psy8791         104 KIVSFDPENNRVRTQAGSEISYEYMIVASGIQ-MYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQ  182 (706)
Q Consensus       104 ~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (706)
                      . . +   .+.|+++++ ++.||+||+|||+. +..+++||.+    ..|             .+..+.         +.
T Consensus        82 v-~-v---~~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~----~~g-------------v~~~~~---------~~  129 (456)
T 1lqt_A           82 V-V-V---GEHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGED----LPG-------------SIAAVD---------FV  129 (456)
T ss_dssp             C-C-B---TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTT----STT-------------EEEHHH---------HH
T ss_pred             E-E-E---CCEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCC----CCC-------------cEEHHH---------HH
Confidence            2 1 3   234666555 47899999999996 6777889831    000             000000         00


Q ss_pred             hhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhH--HHHHHHH----------------HHHHH
Q psy8791         183 EALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPM--KAVLIGD----------------EYLRK  244 (706)
Q Consensus       183 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~--~~~~~~~----------------~~l~~  244 (706)
                      ..+...         ++.    ...+..+.+.++        ++++|+..  +++....                +.+++
T Consensus       130 ~~~~~~---------~d~----~~~~~~~~~~~v--------vVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~  188 (456)
T 1lqt_A          130 GWYNAH---------PHF----EQVSPDLSGARA--------VVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP  188 (456)
T ss_dssp             HHHTTC---------GGG----TTCCCCCCSSEE--------EEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred             hhhhcC---------ccc----ccchhhcCCCEE--------EEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHH
Confidence            000000         000    000001111112        22333322  2222111                11111


Q ss_pred             cCCCCCcEEEEEeCCCcCCC---c------------------hhH------------------HHHHHHHHHh------C
Q psy8791         245 HKKRDAAKLTYCTGMGVLFP---S------------------PFY------------------AEKIHDILIG------R  279 (706)
Q Consensus       245 ~g~~~~~~v~l~~~~~~~~~---~------------------~~~------------------~~~~~~~l~~------~  279 (706)
                      .+.   .+|+++.+...+..   +                  +++                  .+.+.+.+++      +
T Consensus       189 ~g~---~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (456)
T 1lqt_A          189 RGI---QEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHR  265 (456)
T ss_dssp             CCC---CEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSE
T ss_pred             CCC---cEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCc
Confidence            221   26999988765421   1                  121                  2344455555      7


Q ss_pred             CceEEcCCceEEEeCCCC--EEEEEeC-------------CCc--eEEeecEEEECCCCCchhhhhcCCC-CCCCCceee
Q psy8791         280 GVDVHKGKALVEIDLANK--EAVFKSE-------------DKT--ERLPYAIMHVTPPMGPVPELATSRL-VDQSGYVNV  341 (706)
Q Consensus       280 gV~v~~~~~v~~i~~~~~--~v~~~~~-------------~~g--~~i~~D~vI~a~G~~~~~~~~~~~l-~~~~G~i~v  341 (706)
                      ||++++++.+.+|..+++  .+.+...             .+|  ++++||+||+++|++|++.   .++ .+++|++.+
T Consensus       266 gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l---~gl~~d~~g~i~v  342 (456)
T 1lqt_A          266 RMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPT---PGLPFDDQSGTIP  342 (456)
T ss_dssp             EEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCC---TTSCCBTTTTBCC
T ss_pred             eEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCC---CCCcccCCCCeeE
Confidence            999999999999987643  2444321             134  5799999999999999983   355 577889999


Q ss_pred             CccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         342 DKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       342 d~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      |+ .+++++.|+|||+|||+..|.. ....|..||..+|.||...+.+.
T Consensus       343 n~-~~rvt~~pgvya~GD~~~gp~~-~i~~a~~~g~~~a~~i~~~l~~~  389 (456)
T 1lqt_A          343 NV-GGRINGSPNEYVVGWIKRGPTG-VIGTNKKDAQDTVDTLIKNLGNA  389 (456)
T ss_dssp             EE-TTEETTCSSEEECTHHHHCSCS-CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCcCCCCCCEEEEeccCCCCch-hHHHHHHHHHHHHHHHHHHHHhC
Confidence            99 6888899999999999976432 34468999999999999988654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.88  E-value=3.9e-22  Score=236.75  Aligned_cols=282  Identities=15%  Similarity=0.118  Sum_probs=179.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc-c-cccCccccCcccccc-cccccC-CCcEEEE-ce
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF-T-LIGGGMKKLSDSRRP-MKSVLP-SGATWVK-DK  104 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~-~-~~~~~~~~~~~~~~~-~~~~~~-~~v~~i~-~~  104 (706)
                      .+||||||||+||++||.+|++.  +++|+|||+++.....+.. + ....+.. ..++... ..++.. .+++++. .+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~--G~~V~lie~~~~~GG~~~~~~k~~i~~~~-~~~~~~~~~~~l~~~~~v~~~~~~~  204 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRS--GARVMLLDERAEAGGTLLDTAGEQIDGMD-SSAWIEQVTSELAEAEETTHLQRTT  204 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSSGGGGGSSCCEETTEE-HHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCCCceeccCCccccCCCC-HHHHHHHHHHHHhhcCCcEEEeCCE
Confidence            46899999999999999999998  8999999999865422221 0 0011100 1111111 122223 3788776 47


Q ss_pred             eEEEEcCCCEEE---------e--------CCCeEEEecEEEEccccccccCCCCCCcccccccccccccccccccCccC
Q psy8791         105 IVSFDPENNRVR---------T--------QAGSEISYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFF  167 (706)
Q Consensus       105 v~~id~~~~~v~---------~--------~~g~~~~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  167 (706)
                      |.+++.++....         +        .++.++.||+||+|||+.+..+++||.+                      
T Consensus       205 V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~----------------------  262 (965)
T 2gag_A          205 VFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENND----------------------  262 (965)
T ss_dssp             EEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCC----------------------
T ss_pred             EEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCC----------------------
Confidence            888876543211         1        1123689999999999999888888832                      


Q ss_pred             CccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCC
Q psy8791         168 PRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKK  247 (706)
Q Consensus       168 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~  247 (706)
                                   .      +  .+   +....+....+......+.+++|        ++|++.  ++.....+.+.|.
T Consensus       263 -------------~------~--gv---~~~~~~~~~l~~~~~~~gk~vvV--------iGgG~~--g~E~A~~L~~~G~  308 (965)
T 2gag_A          263 -------------R------P--GI---MLAGAVRSYLNRYGVRAGARIAV--------ATTNDS--AYELVRELAATGG  308 (965)
T ss_dssp             -------------S------T--TE---EEHHHHHHHHHTTCEESCSSEEE--------EESSTT--HHHHHHHHGGGTC
T ss_pred             -------------C------C--CE---EEhHHHHHHHHhcCCCCCCeEEE--------EcCCHH--HHHHHHHHHHcCC
Confidence                         0      0  11   11111211111111122233322        233321  2233344666664


Q ss_pred             CCCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeC--CCC--EEEEEe--CC--Cc--eEEeecEEEE
Q psy8791         248 RDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDL--ANK--EAVFKS--ED--KT--ERLPYAIMHV  317 (706)
Q Consensus       248 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~--~v~~~~--~~--~g--~~i~~D~vI~  317 (706)
                      .    |+++++.+.+++  .     .+.+++.||++++++.+.++..  +++  .+++..  ..  +|  +++++|.||+
T Consensus       309 ~----Vtvv~~~~~~~~--~-----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~  377 (965)
T 2gag_A          309 V----VAVIDARSSISA--A-----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAV  377 (965)
T ss_dssp             C----SEEEESCSSCCH--H-----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEE
T ss_pred             c----EEEEECCCccch--h-----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEE
Confidence            3    889998887652  2     5678899999999999999986  333  344432  10  24  6899999999


Q ss_pred             CCCCCchhhhhcCCCCCCCCceeeCccccc----cCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         318 TPPMGPVPELATSRLVDQSGYVNVDKATLQ----HVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       318 a~G~~~~~~~~~~~l~~~~G~i~vd~~~l~----~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      ++|.+|+..+..    ..+|.+.+|+ .++    .|+.|+|||+|||+..+.  . ..|..||+.+|.||...+..
T Consensus       378 a~G~~P~~~l~~----~~~g~i~vd~-~~~~~v~~ts~p~IyAaGD~a~~~~--l-~~A~~~G~~aA~~i~~~lg~  445 (965)
T 2gag_A          378 AGGFNPVVHLHS----QRQGKLDWDT-TIHAFVPADAVANQHLAGAMTGRLD--T-ASALSTGAATGAAAATAAGF  445 (965)
T ss_dssp             ECCEEECCHHHH----HTTCCEEEET-TTTEEEECSCCTTEEECGGGGTCCS--H-HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcCcChHHHH----hCCCcEEEcC-cccccccCCCCCCEEEEEecCCchh--H-HHHHHHHHHHHHHHHHHcCC
Confidence            999999954432    1257899998 565    378999999999998743  4 48999999999999988743

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.88  E-value=4.2e-23  Score=238.67  Aligned_cols=310  Identities=13%  Similarity=0.097  Sum_probs=181.7

Q ss_pred             cccccccccccccc--ccccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccc
Q psy8791           4 LKLCPLKSYNLLSS--SFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK   81 (706)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~   81 (706)
                      ..+|..+.......  .+.+....+....++|+|||||+|||+||..|+++  +++|+|||+++.............+..
T Consensus       361 ~~~C~~n~~~g~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~--G~~Vtlie~~~~~GG~~~~~~~~pg~~  438 (729)
T 1o94_A          361 PMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKIGGHLNQVAALPGLG  438 (729)
T ss_dssp             CCCCSSCTTTTTHHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTTTHHHHTTSTTCG
T ss_pred             ceeeccCccccccccccccccccccccCCceEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCeeeecccCCChH
Confidence            34566655443211  12122223344568999999999999999999998  899999999986432211111101110


Q ss_pred             cCcccccccccccCCCcEEE---EceeEEEEcCCCEEEeCCCeEEEecEEEEcccccc--------ccCCCCCCcccccc
Q psy8791          82 KLSDSRRPMKSVLPSGATWV---KDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQM--------YYDRVKGPSALINA  150 (706)
Q Consensus        82 ~~~~~~~~~~~~~~~~v~~i---~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~--------~~~~~~g~~~~~~~  150 (706)
                      .....    .++....++.+   ...++.++. ++.++++++.++.||+||+|||+.+        ..+++||.+     
T Consensus       439 ~~~~~----~~~~~~~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~-----  508 (729)
T 1o94_A          439 EWSYH----RDYRETQITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGAD-----  508 (729)
T ss_dssp             GGHHH----HHHHHHHHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCC-----
T ss_pred             HHHHH----HHHHHHHHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCcc-----
Confidence            00000    00110011110   012333433 3345555555688999999999984        456677721     


Q ss_pred             cccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHHHhccCCCEEEecCCCCeeeCCh
Q psy8791         151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGA  230 (706)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~  230 (706)
                                                      +..  .  .+   ++...+   .+ .....+.+++|. |     ++|+
T Consensus       509 --------------------------------~~~--~--~v---~~~~~~---l~-~~~~~gk~VvVI-G-----~GgG  539 (729)
T 1o94_A          509 --------------------------------ASL--P--DQ---LTPEQV---MD-GKKKIGKRVVIL-N-----ADTY  539 (729)
T ss_dssp             --------------------------------TTS--T--TE---ECHHHH---HH-CCSCCCSEEEEE-E-----CCCS
T ss_pred             --------------------------------ccC--C--CE---EEHHHH---hc-CCCCCCCeEEEE-c-----CCCC
Confidence                                            000  0  11   111111   11 001122222221 1     1133


Q ss_pred             hHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC-CC
Q psy8791         231 PMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE-DK  306 (706)
Q Consensus       231 ~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~-~~  306 (706)
                      .  .+......+.+.|.    +|+++++.+ +++   .+.....+.+.|++.||++++++.+.+|+.++  +.+... .+
T Consensus       540 ~--~g~e~A~~l~~~G~----~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--v~~~~~~~~  610 (729)
T 1o94_A          540 F--MAPSLAEKLATAGH----EVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR--MEIYNIWGD  610 (729)
T ss_dssp             S--HHHHHHHHHHHTTC----EEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE--EEEEETTCS
T ss_pred             c--hHHHHHHHHHHcCC----EEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe--EEEEEecCC
Confidence            2  12333445666664    599999988 543   11125678888999999999999999998754  443321 22


Q ss_pred             c-eE------------------EeecEEEECCCCCchhhhhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCc
Q psy8791         307 T-ER------------------LPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK  367 (706)
Q Consensus       307 g-~~------------------i~~D~vI~a~G~~~~~~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~  367 (706)
                      + ++                  +++|.||+|+|.+|+..+.. ++.     ..+|+ +++ |+.|+|||+|||+.   ++
T Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~-~l~-----~~vd~-~~~-t~~~~VyAiGD~~~---~~  679 (729)
T 1o94_A          611 GSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN-ELK-----ARESE-WAE-NDIKGIYLIGDAEA---PR  679 (729)
T ss_dssp             CSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHH-HHH-----HTGGG-TGG-GTCCEEEECGGGTS---CC
T ss_pred             ceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHH-HHh-----hhccc-ccc-cCCCCeEEEeCccc---hh
Confidence            2 33                  99999999999999954432 110     13677 677 89999999999997   35


Q ss_pred             hHHHHHHhHHHHHHHHHHHHcCCCCCC
Q psy8791         368 TAAAVAGQCKVVYDNLSAVMKNRALPH  394 (706)
Q Consensus       368 ~~~~a~~qg~~~a~ni~~~l~g~~~~~  394 (706)
                      ++..|..||+.+|.||...+.+.+.|+
T Consensus       680 ~~~~A~~~G~~aA~~i~~~l~~~~~p~  706 (729)
T 1o94_A          680 LIADATFTGHRVAREIEEANPQIAIPY  706 (729)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCTTSCCCC
T ss_pred             hHHHHHHHHHHHHHHhhhhcccCCCCe
Confidence            677899999999999987776666555

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.87  E-value=2.8e-21  Score=212.14  Aligned_cols=269  Identities=16%  Similarity=0.151  Sum_probs=165.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---hcCCCe---EEEEcCCCCcccCccc------------------ccc----cCc---
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTS---KLGKGQ---VSIVEPTDDHYYQPMF------------------TLI----GGG---   79 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~---~~~~~~---Vtlie~~~~~~~~p~~------------------~~~----~~~---   79 (706)
                      ++|+|||||+||++||..|++   .  |.+   |+|||+++........                  ...    ...   
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~--G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~   80 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK--GAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE   80 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT--TCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc--CCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence            689999999999999999999   6  888   9999998753211000                  000    000   


Q ss_pred             ----------------cccCcccccccccccC-CCcE--EE-EceeEEEEcCCC----EEEeCC---C--eEEEecEEEE
Q psy8791          80 ----------------MKKLSDSRRPMKSVLP-SGAT--WV-KDKIVSFDPENN----RVRTQA---G--SEISYEYMIV  130 (706)
Q Consensus        80 ----------------~~~~~~~~~~~~~~~~-~~v~--~i-~~~v~~id~~~~----~v~~~~---g--~~~~yd~lvi  130 (706)
                                      ......+...+..+.. .+++  +. .++|+.|+...+    .|++.+   |  .++.||+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVv  160 (464)
T 2xve_A           81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVC  160 (464)
T ss_dssp             BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEE
Confidence                            0000001111111111 2454  43 478899987655    676654   4  5789999999


Q ss_pred             ccc--cccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChhHHHHHHHHH
Q psy8791         131 ASG--IQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNL  208 (706)
Q Consensus       131 AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~l  208 (706)
                      |||  +.+..|.+||.+                    .|+++.+++..    +              .+.          
T Consensus       161 AtG~~s~p~~p~ipG~~--------------------~~~g~~~hs~~----~--------------~~~----------  192 (464)
T 2xve_A          161 CTGHFSTPYVPEFEGFE--------------------KFGGRILHAHD----F--------------RDA----------  192 (464)
T ss_dssp             CCCSSSSBCCCCCBTTT--------------------TCCSEEEEGGG----C--------------CCG----------
T ss_pred             CCCCCCCCccCCCCCcc--------------------cCCceEEehhh----h--------------CCH----------
Confidence            999  788888888832                    12222222111    0              000          


Q ss_pred             HhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCc
Q psy8791         209 QHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKA  288 (706)
Q Consensus       209 ~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~  288 (706)
                      ..+.+.+++|        ++|+.. ...++ ..+.+.+.    +|+++++.+.+++.. +         ..||+++  ..
T Consensus       193 ~~~~~k~VvV--------VG~G~s-g~eiA-~~l~~~g~----~V~li~~~~~~~~~~-~---------~~~V~~~--~~  246 (464)
T 2xve_A          193 LEFKDKTVLL--------VGSSYS-AEDIG-SQCYKYGA----KKLISCYRTAPMGYK-W---------PENWDER--PN  246 (464)
T ss_dssp             GGGTTSEEEE--------ECCSTT-HHHHH-HHHHHTTC----SEEEEECSSCCCCCC-C---------CTTEEEC--SC
T ss_pred             hHcCCCEEEE--------EcCCCC-HHHHH-HHHHHhCC----eEEEEEECCCCCCCC-C---------CCceEEc--CC
Confidence            0122222222        222221 12222 23455554    389999887776521 1         2588888  68


Q ss_pred             eEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhc-CCC-CCCCCceeeCcc-ccccCCCCCEEEccccCCCC
Q psy8791         289 LVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELAT-SRL-VDQSGYVNVDKA-TLQHVKYSNVFAIGDCSNLP  364 (706)
Q Consensus       289 v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~-~~l-~~~~G~i~vd~~-~l~~~~~~~Ifa~GD~~~~~  364 (706)
                      |++++.+  .|++.   +|+++++|.||+|||++|+ +++.. .++ .+++|++ ++.+ ....++.|+|||+|||+.. 
T Consensus       247 V~~i~~~--~V~~~---dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-  319 (464)
T 2xve_A          247 LVRVDTE--NAYFA---DGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQW-  319 (464)
T ss_dssp             EEEECSS--EEEET---TSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCS-
T ss_pred             eEEEeCC--EEEEC---CCCEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-ccccceEecCCCCCEEEEeCcccc-
Confidence            8999753  46553   7889999999999999999 66665 466 4444465 4431 1223889999999998874 


Q ss_pred             CCchHHHHHHhHHHHHHHHH
Q psy8791         365 TSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       365 ~~~~~~~a~~qg~~~a~ni~  384 (706)
                        .....|..||+.+|+++.
T Consensus       320 --~~~~~a~~qa~~~a~~l~  337 (464)
T 2xve_A          320 --YSFNMFDAQAWYARDVIM  337 (464)
T ss_dssp             --SCHHHHHHHHHHHHHHHT
T ss_pred             --cchHHHHHHHHHHHHHHc
Confidence              356788999999999994

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.85  E-value=6.8e-21  Score=209.89  Aligned_cols=111  Identities=6%  Similarity=-0.026  Sum_probs=76.5

Q ss_pred             CCceEEcCCceEEEeCCCCE--EEEEeCCCce--EEeecEEEECCCCCch---hhhhcCCCCCCCCceeeCccccccCC-
Q psy8791         279 RGVDVHKGKALVEIDLANKE--AVFKSEDKTE--RLPYAIMHVTPPMGPV---PELATSRLVDQSGYVNVDKATLQHVK-  350 (706)
Q Consensus       279 ~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g~--~i~~D~vI~a~G~~~~---~~~~~~~l~~~~G~i~vd~~~l~~~~-  350 (706)
                      .||++++++.|++++.+++.  +.+....+|+  ++++|.||+|+|++|+   +++......  .|++.||+ ++++.. 
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~--~g~i~v~~-~~~~~~~  405 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEY--LGDHEIGR-DYRLQTD  405 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGG--BC--CCCT-TSBCCBC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHH--hCCcccCc-ccccccC
Confidence            69999999999999876554  3333333454  5999999999999998   444443221  18899998 688654 


Q ss_pred             ---CCCEEEccccCCC---CCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         351 ---YSNVFAIGDCSNL---PTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       351 ---~~~Ifa~GD~~~~---~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                         .|+|||+|||...   ..|.....|.+++++++..+.+...+.++
T Consensus       406 ~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~~~~~~~~~  453 (463)
T 3s5w_A          406 ERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQHLKPGTAA  453 (463)
T ss_dssp             TTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHhhcCCchhH
Confidence               4569999999752   34567778999999988888766555443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.84  E-value=1.2e-20  Score=216.70  Aligned_cols=261  Identities=18%  Similarity=0.159  Sum_probs=165.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccc-cCCCcEEEEcee
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVKDKI  105 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~v  105 (706)
                      ....++|+|||||+||++||..|+++  +++|+|||+++++.+.+.+.....+..........+... ...+++++.++.
T Consensus       370 ~~~~~~vvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~  447 (671)
T 1ps9_A          370 AVQKKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT  447 (671)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcE
Confidence            34568999999999999999999998  899999999987655443322211111111111112222 235788877553


Q ss_pred             EEEEcCCCEEEeCCCeEE-EecEEEEccccccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhh
Q psy8791         106 VSFDPENNRVRTQAGSEI-SYEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEA  184 (706)
Q Consensus       106 ~~id~~~~~v~~~~g~~~-~yd~lviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  184 (706)
                      +..            ..+ .||+||+|||+.+..|++||.+                                     . 
T Consensus       448 v~~------------~~~~~~d~lviAtG~~p~~~~i~G~~-------------------------------------~-  477 (671)
T 1ps9_A          448 VTA------------DQLQAFDETILASGIVPRTPPIDGID-------------------------------------H-  477 (671)
T ss_dssp             CCS------------SSSCCSSEEEECCCEEECCCCCBTTT-------------------------------------S-
T ss_pred             ecH------------HHhhcCCEEEEccCCCcCCCCCCCCC-------------------------------------C-
Confidence            211            123 8999999999999988899832                                     0 


Q ss_pred             hcCCCCCcccCCChhHHHHHHHHHHh-ccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCC---------------
Q psy8791         185 LDQPDSGVSTNYSPQYVEKTLRNLQH-FQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKR---------------  248 (706)
Q Consensus       185 ~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~---------------  248 (706)
                         .  .+.+   ..      +.+.. ...++.+       +.++|+..  ++.....+.+.|..               
T Consensus       478 ---~--~v~~---~~------~~l~~~~~~~~~V-------vVIGgG~~--g~E~A~~l~~~G~~vtv~~~~~~~~~g~~  534 (671)
T 1ps9_A          478 ---P--KVLS---YL------DVLRDKAPVGNKV-------AIIGCGGI--GFDTAMYLSQPGESTSQNIAGFCNEWGID  534 (671)
T ss_dssp             ---T--TEEE---HH------HHHTSCCCCCSEE-------EEECCHHH--HHHHHHHHTCCSSCGGGCHHHHHHHTTBC
T ss_pred             ---C--cEee---HH------HHhhCCCCCCCeE-------EEECCChh--HHHHHHHHHhcCCCcccchhhhhhhhccc
Confidence               0  0110   00      01111 1112222       22344432  12222233333311               


Q ss_pred             ------------------CCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc
Q psy8791         249 ------------------DAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT  307 (706)
Q Consensus       249 ------------------~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g  307 (706)
                                        ...+++++++.+..++   ++.....+++.|++.||++++++.+++++.++  +++.  .+|
T Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--v~~~--~~G  610 (671)
T 1ps9_A          535 SSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG--LHVV--ING  610 (671)
T ss_dssp             TTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE--EEEE--ETT
T ss_pred             ccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCe--EEEe--cCC
Confidence                              1246888888766553   45667778899999999999999999998653  5543  255


Q ss_pred             --eEEeecEEEECCCCCchhhhhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         308 --ERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       308 --~~i~~D~vI~a~G~~~~~~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                        +++++|.||+|+|++|+..+..               .++ ...++||++|||+... ++.+..|++||..+|.||
T Consensus       611 ~~~~i~~D~Vi~a~G~~p~~~l~~---------------~l~-~~g~~v~aiGD~~~~~-~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          611 ETQVLAVDNVVICAGQEPNRALAQ---------------PLI-DSGKTVHLIGGCDVAM-ELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             EEEEECCSEEEECCCEEECCTTHH---------------HHH-TTTCCEEECGGGTCCS-SCCHHHHHHHHHHHHHHC
T ss_pred             eEEEEeCCEEEECCCccccHHHHH---------------HHH-hcCCCEEEECCcCccC-chhHHHHHHHHHHHHHhC
Confidence              6899999999999999954332               012 1237899999999875 346889999999999985

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.84  E-value=2e-20  Score=208.36  Aligned_cols=104  Identities=11%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             hCCceEEc--CCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCCCCCCCce---------eeCccc
Q psy8791         278 GRGVDVHK--GKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRLVDQSGYV---------NVDKAT  345 (706)
Q Consensus       278 ~~gV~v~~--~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l~~~~G~i---------~vd~~~  345 (706)
                      +.||+++.  +..|++|++++  +++   .||+++++|+||+|||+.++. ++...++...+|..         .+-. .
T Consensus       342 ~~nV~lv~~~~~~I~~it~~g--v~~---~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~-g  415 (540)
T 3gwf_A          342 RPNVEAVAIKENPIREVTAKG--VVT---EDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYL-G  415 (540)
T ss_dssp             STTEEEEETTTSCEEEECSSE--EEE---TTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBHHHHTSSSCCCBT-T
T ss_pred             CCCEEEEeCCCCCccEEecCe--EEc---CCCCEEECCEEEECCccCccccCcCcceEECCCCcCHHHhhccChhhcc-c
Confidence            45899985  67999998765  554   489999999999999999986 66655444444422         1222 3


Q ss_pred             cccCCCCCEEEc-cccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         346 LQHVKYSNVFAI-GDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       346 l~~~~~~~Ifa~-GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      +.+.++||+|++ |..+.  .......+..|++++++.|.....+
T Consensus       416 ~~v~gfPN~f~~~Gp~~~--~~s~~~~~e~q~~~i~~~i~~~~~~  458 (540)
T 3gwf_A          416 VSTANFPNWFMVLGPNGP--FTNLPPSIETQVEWISDTIGYAERN  458 (540)
T ss_dssp             TBCTTCTTEEESSCSSCB--CSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCceEEEecCCCC--CccHHHHHHHHHHHHHHHHHHHHHC
Confidence            667899999999 87665  2335567889999999999777654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.83  E-value=8.2e-20  Score=200.03  Aligned_cols=274  Identities=15%  Similarity=0.136  Sum_probs=162.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC--eEEEEcCCCCcc----cCcccc---ccc---------------------C
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG--QVSIVEPTDDHY----YQPMFT---LIG---------------------G   78 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~--~Vtlie~~~~~~----~~p~~~---~~~---------------------~   78 (706)
                      ..++|+|||||++|+++|..|++.  +.  +|+|||+++...    +.+...   .++                     .
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~--G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAE--KAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc--CCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            357999999999999999999998  77  999999986421    111000   000                     0


Q ss_pred             cccc------------C------c---------ccccccccccC-CCcEEE-EceeEEEEcCCC--EEEeCC---Ce---
Q psy8791          79 GMKK------------L------S---------DSRRPMKSVLP-SGATWV-KDKIVSFDPENN--RVRTQA---GS---  121 (706)
Q Consensus        79 ~~~~------------~------~---------~~~~~~~~~~~-~~v~~i-~~~v~~id~~~~--~v~~~~---g~---  121 (706)
                      ..+.            .      .         .+...+.++.. .+..+. ..+|++|+...+  .|++.+   |.   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence            0000            0      0         00000011111 122232 478888887655  566654   65   


Q ss_pred             EEEecEEEEcccc--ccccCCCCCCcccccccccccccccccccCccCCccccccccCccchhhhhcCCCCCcccCCChh
Q psy8791         122 EISYEYMIVASGI--QMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQ  199 (706)
Q Consensus       122 ~~~yd~lviAtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~  199 (706)
                      ++.||+||+|||.  .+..|.+||.+  ++.              ..|+.+.+++..                  ..+..
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p~i~G~~--~~~--------------~~~~g~v~~~~~------------------~~~~~  208 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIPNIKGLD--EYA--------------KAVPGSVLHSSL------------------FREPE  208 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBCCCBTHH--HHH--------------HHSTTSEEEGGG------------------CCCGG
T ss_pred             EEEeCEEEECCCCCCCCCCCCCCChh--hhh--------------ccCCccEEEecc------------------cCChh
Confidence            7899999999998  77778888831  000              000111111100                  00110


Q ss_pred             HHHHHHHHHHhccCCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCCchhHHHHHHHHHHhC
Q psy8791         200 YVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGR  279 (706)
Q Consensus       200 ~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~~~~~~~~~~~~l~~~  279 (706)
                                .+.+.+++        +++|+.. ...++. .+.+.+..   .|+++++.+.+             +++.
T Consensus       209 ----------~~~~k~Vv--------VvG~G~s-g~e~A~-~l~~~~~~---~V~l~~r~~~~-------------l~~~  252 (447)
T 2gv8_A          209 ----------LFVGESVL--------VVGGASS-ANDLVR-HLTPVAKH---PIYQSLLGGGD-------------IQNE  252 (447)
T ss_dssp             ----------GGTTCCEE--------EECSSHH-HHHHHH-HHTTTSCS---SEEEECTTCCS-------------CBCS
T ss_pred             ----------hcCCCEEE--------EEccCcC-HHHHHH-HHHHHhCC---cEEEEeCCCCc-------------CCCC
Confidence                      12233322        2344422 222222 34444421   28888887655             3456


Q ss_pred             CceEEcCCceEEEeCCCCEEEEEeCCCceE-EeecEEEECCCCCch-hh-----hhcC--CCCCCCCceeeCcccccc--
Q psy8791         280 GVDVHKGKALVEIDLANKEAVFKSEDKTER-LPYAIMHVTPPMGPV-PE-----LATS--RLVDQSGYVNVDKATLQH--  348 (706)
Q Consensus       280 gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~-i~~D~vI~a~G~~~~-~~-----~~~~--~l~~~~G~i~vd~~~l~~--  348 (706)
                      ||.+  ...|+++..+++.|++.   +|++ +++|.||+|+|++|+ ++     +...  ++. .++++.++. +.++  
T Consensus       253 ~i~~--~~~v~~~~~~~~~v~~~---dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~-~~~~~~~~~-~~~v~~  325 (447)
T 2gv8_A          253 SLQQ--VPEITKFDPTTREIYLK---GGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLI-DDGSHVHNV-YQHIFY  325 (447)
T ss_dssp             SEEE--ECCEEEEETTTTEEEET---TTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCC-SSSSSCCSE-ETTTEE
T ss_pred             CeEE--ecCeEEEecCCCEEEEC---CCCEeccCCEEEECCCCCcCCCCCcccccccccCcee-cCCCccccc-cccccc
Confidence            7764  46789997655556653   6776 799999999999999 66     5443  332 245566665 3442  


Q ss_pred             CCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         349 VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       349 ~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      ++.|+||++||+....   ++..|..||+.+|++|.
T Consensus       326 ~~~p~l~~~G~~~~~~---~~~~a~~qa~~~a~~~~  358 (447)
T 2gv8_A          326 IPDPTLAFVGLALHVV---PFPTSQAQAAFLARVWS  358 (447)
T ss_dssp             TTCTTEEESSCCBSSC---HHHHHHHHHHHHHHHHT
T ss_pred             CCCCcEEEEecccccc---CchHHHHHHHHHHHHHc
Confidence            7899999999998763   67889999999999994

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.79  E-value=3.3e-18  Score=162.79  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC-CCCCCceeeCcc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL-VDQSGYVNVDKA  344 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l-~~~~G~i~vd~~  344 (706)
                      +.+.+.+.+.+++.||+++.+ +|++++.+++.+.+ .+++| ++++|.||+|+|.+|+ .....++ .+ +|++.||+ 
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v-~~~~g-~i~ad~vI~A~G~~~~-~~~~~g~~~~-~g~i~vd~-  129 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEV-ETEEG-VEKAERLLLCTHKDPT-LPSLLGLTRR-GAYIDTDE-  129 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEE-ECSSC-EEEEEEEEECCTTCCH-HHHHHTCCEE-TTEECCCT-
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEE-EECCC-EEEECEEEECCCCCCC-ccccCCCCcc-CceEEeCC-
Confidence            345566777888899999999 99999865544443 34466 8999999999999985 3455566 55 89999999 


Q ss_pred             ccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         345 TLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       345 ~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      +++ |+.|+|||+|||+..+. +++..|..||+.+|.||...+.+++.
T Consensus       130 ~~~-t~~~~i~a~GD~~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~  175 (180)
T 2ywl_A          130 GGR-TSYPRVYAAGVARGKVP-GHAIISAGDGAYVAVHLVSDLRGEPY  175 (180)
T ss_dssp             TCB-CSSTTEEECGGGGTCCS-CCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCC-cCCCCEEEeecccCcch-hhHHHHHHhHHHHHHHHHHHhhhccc
Confidence            688 79999999999999754 37788999999999999999988764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.79  E-value=2.2e-18  Score=192.31  Aligned_cols=105  Identities=13%  Similarity=0.186  Sum_probs=70.9

Q ss_pred             hCCceEE--cCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-hhhcCCCCCCCCceeeCc---------cc
Q psy8791         278 GRGVDVH--KGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-ELATSRLVDQSGYVNVDK---------AT  345 (706)
Q Consensus       278 ~~gV~v~--~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-~~~~~~l~~~~G~i~vd~---------~~  345 (706)
                      +.+|+++  ....|++|++++  +..   ++| ++++|+||+|||+.+++ ++...++...+| +.+++         ..
T Consensus       355 ~~~V~lvd~~~~~I~~it~~g--v~~---~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G-~~l~~~w~~~~~~y~g  427 (549)
T 4ap3_A          355 RDNVELVDLRSTPIVGMDETG--IVT---TGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGG-RTLKETWAAGPRTYLG  427 (549)
T ss_dssp             STTEEEEETTTSCEEEEETTE--EEE---SSC-EEECSEEEECCCEEESSTTGGGSEEECGGG-CBHHHHTTTSCCCBTT
T ss_pred             CCCEEEEeCCCCCceEEeCCc--EEe---CCC-ceecCEEEECCcccccccccCceeEECCCC-cCHHHhhccchhhccc
Confidence            3488888  347899998755  544   378 99999999999999986 666554444444 33331         13


Q ss_pred             cccCCCCCEEEc-cccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         346 LQHVKYSNVFAI-GDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       346 l~~~~~~~Ifa~-GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      +.+.++||+|.+ |-.+..........+..|++++++.|.....+
T Consensus       428 ~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~  472 (549)
T 4ap3_A          428 LGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDAR  472 (549)
T ss_dssp             TBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHHHHHC
Confidence            456789999998 43322112234556788999999988766544

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.78  E-value=6.9e-19  Score=196.24  Aligned_cols=108  Identities=12%  Similarity=0.090  Sum_probs=71.5

Q ss_pred             HHhCCceEEc--CCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCceeeCc--------c
Q psy8791         276 LIGRGVDVHK--GKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVNVDK--------A  344 (706)
Q Consensus       276 l~~~gV~v~~--~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~vd~--------~  344 (706)
                      |.+.||+++.  +..|++|++++  +..   ++| ++++|+||+|||+.++ ..+....+...+|....+.        .
T Consensus       348 l~~~nV~lv~~~~~~I~~it~~g--v~~---~dG-~~~~D~IV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~  421 (545)
T 3uox_A          348 YNRDNVHLVDIREAPIQEVTPEG--IKT---ADA-AYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWAEGPSTYL  421 (545)
T ss_dssp             TTSTTEEEEETTTSCEEEEETTE--EEE---SSC-EEECSEEEECCCCBSSSCSCTTSEEECGGGCBHHHHTTTSCCCBT
T ss_pred             hcCCCEEEEecCCCCceEEccCe--EEe---CCC-eeecCEEEECCccccccccCCCceEECCCCccHHHhhccccceee
Confidence            3345889986  78899998765  554   378 9999999999999986 3443333444445332211        1


Q ss_pred             ccccCCCCCEEEcc-ccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         345 TLQHVKYSNVFAIG-DCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       345 ~l~~~~~~~Ifa~G-D~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      .+.+.++||+|.+. .............+..|++++++.|.....+
T Consensus       422 g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~  467 (545)
T 3uox_A          422 GLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYMKDN  467 (545)
T ss_dssp             TTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHHHHC
Confidence            34567899999984 2221111234557789999999999776654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.78  E-value=1e-19  Score=200.98  Aligned_cols=170  Identities=18%  Similarity=0.253  Sum_probs=120.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      +++|||||||+||+++|++|++.  +.+|+|||++++|.|+|+++.+.+|......+..|++.++               
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~--~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~---------------  104 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTK--KYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFA---------------  104 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTT--TCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHH---------------
T ss_pred             CCCEEEECCcHHHHHHHHHhhhC--CCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHH---------------
Confidence            45899999999999999999876  7899999999999999998877777654444433321110               


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEeceEEEEEcCCCeEEcC---------
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ---------  617 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~---------  617 (706)
                                                                  .....+++|++++|+.||+++++|++.         
T Consensus       105 --------------------------------------------~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~  140 (502)
T 4g6h_A          105 --------------------------------------------LKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLY  140 (502)
T ss_dssp             --------------------------------------------TTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECS
T ss_pred             --------------------------------------------HhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeec
Confidence                                                        011247899999999999999998753         


Q ss_pred             -----------CCcEEeeCEEEEecCcccCccCCCCchhh------hcccccccccc-cCccchhh-------hccCccE
Q psy8791         618 -----------AGSEISYEYMIVASGIQMYYDRVKGGTTS------LEDRGKMRGVS-DGFSTVTW-------EQKHKQY  672 (706)
Q Consensus       618 -----------~g~~i~yd~lViAtGs~~~~p~i~G~~~~------~~~~~~~~~~~-~~~~~~~~-------~~~~k~v  672 (706)
                                 ++.+++||+||||||++|+.+++||+.+.      ++++..++... ..++....       .....++
T Consensus       141 ~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~v  220 (502)
T 4g6h_A          141 QPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI  220 (502)
T ss_dssp             SSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEE
T ss_pred             ccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccce
Confidence                       45689999999999999999999998642      22222222211 11111110       0122368


Q ss_pred             EEE-----cHHHHHHHHHHHhhhhhhhccc
Q psy8791         673 QLV-----SPEIRAKAYDLTKRKMKKEAQW  697 (706)
Q Consensus       673 vVi-----G~E~A~~l~~~~~~~~~~~~~~  697 (706)
                      +||     |+|+|++|+++..+.+++.++.
T Consensus       221 vVvGgG~tGvE~A~~l~~~~~~~l~~~~~~  250 (502)
T 4g6h_A          221 VVVGGGPTGVEAAGELQDYVHQDLRKFLPA  250 (502)
T ss_dssp             EEECCSHHHHHHHHHHHHHHHHTHHHHCHH
T ss_pred             EEECCCcchhhhHHHHHHHHHHHHHhhccc
Confidence            888     8999999999987766655443

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.78  E-value=6.5e-18  Score=189.21  Aligned_cols=107  Identities=13%  Similarity=0.141  Sum_probs=79.7

Q ss_pred             hCCceEE--cCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCCCCCCCceeeC-------c-ccc
Q psy8791         278 GRGVDVH--KGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRLVDQSGYVNVD-------K-ATL  346 (706)
Q Consensus       278 ~~gV~v~--~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l~~~~G~i~vd-------~-~~l  346 (706)
                      +.+|+++  .+..|++|+.++  |++.   | +++++|+||||||++++ ..+...++.+.+|....+       . ..+
T Consensus       350 ~~~v~lv~~~~~~i~~i~~~g--v~~~---d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~~~  423 (542)
T 1w4x_A          350 RDNVHLVDTLSAPIETITPRG--VRTS---E-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGL  423 (542)
T ss_dssp             STTEEEEETTTSCEEEECSSE--EEES---S-CEEECSEEEECCCCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTT
T ss_pred             CCCEEEEecCCCCceEEcCCe--EEeC---C-eEEecCEEEEcCCccccccCcCceeeECCCCCCHHHhhcCchheeccc
Confidence            3568877  367899998654  6553   6 88999999999999996 566655556666655553       1 136


Q ss_pred             ccCCCCCEEEc-cccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         347 QHVKYSNVFAI-GDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       347 ~~~~~~~Ifa~-GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      .+.++||+|++ ||.+....+.....+..|++++|++|....++.
T Consensus       424 ~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~  468 (542)
T 1w4x_A          424 STAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNG  468 (542)
T ss_dssp             BCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCC
Confidence            67889999998 998754334456789999999999999887654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.75  E-value=2.9e-19  Score=194.45  Aligned_cols=114  Identities=26%  Similarity=0.542  Sum_probs=95.4

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSS  548 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  548 (706)
                      +|||||||+||+++|.+|++..++.+|+|||+++++.|.|+++.+.+|.....++                         
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i-------------------------   58 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDI-------------------------   58 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGS-------------------------
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHh-------------------------
Confidence            6999999999999999999987789999999999999888877666665443333                         


Q ss_pred             ceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEeeCEE
Q psy8791         549 YTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEISYEYM  627 (706)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd~l  627 (706)
                                                           ..++..+++ .||+|++++|++||+++++|++++|++++||+|
T Consensus        59 -------------------------------------~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~L  101 (430)
T 3hyw_A           59 -------------------------------------SVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYL  101 (430)
T ss_dssp             -------------------------------------EEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEE
T ss_pred             -------------------------------------hhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEE
Confidence                                                 233334443 489999999999999999999999999999999


Q ss_pred             EEecCcccCccCCCCchh
Q psy8791         628 IVASGIQMYYDRVKGGTT  645 (706)
Q Consensus       628 ViAtGs~~~~p~i~G~~~  645 (706)
                      |||||+++. +++||+++
T Consensus       102 ViAtG~~~~-~~i~G~~e  118 (430)
T 3hyw_A          102 VIATGPKLV-FGAEGQEE  118 (430)
T ss_dssp             EECCCCEEE-CCSBTHHH
T ss_pred             EEeCCCCcc-CCccCccc
Confidence            999999874 57999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.70  E-value=1.6e-17  Score=177.52  Aligned_cols=156  Identities=18%  Similarity=0.204  Sum_probs=109.4

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCC-cceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~-~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      .+..+|||||||+||++||..|+.  ++.+|+|||++++..|. +.++.                               
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~~~~y~~~~l~~-------------------------------   53 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALG--KCDDITMINSEKYLPYYRPRLNE-------------------------------   53 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSSSCCBCGGGHHH-------------------------------
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCCCCCcccChhhH-------------------------------
Confidence            345689999999999999999943  47999999998876542 22211                               


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEe-ceEEEEEcCCCeEEcCCCcE
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVK-DKIVSFDPENNRVRTQAGSE  621 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~-~~v~~id~~~~~V~~~~g~~  621 (706)
                                                     +..+....+++.....+++ +.+++++. .+|++||+++++|++++|++
T Consensus        54 -------------------------------~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~  102 (385)
T 3klj_A           54 -------------------------------IIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEK  102 (385)
T ss_dssp             -------------------------------HHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCE
T ss_pred             -------------------------------HHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCE
Confidence                                           1111112223333333333 36899965 48999999999999999999


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++|+.|++||.+    .+..++...+..........+++++||     |+|+|..|++...
T Consensus       103 ~~yd~lvlAtG~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~  170 (385)
T 3klj_A          103 IKYEKLIIASGSIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGT  170 (385)
T ss_dssp             EECSEEEECCCEEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTC
T ss_pred             EECCEEEEecCCCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            99999999999999999999976    233333322222222222347899999     8999999988754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.69  E-value=5.9e-17  Score=174.88  Aligned_cols=118  Identities=29%  Similarity=0.489  Sum_probs=98.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      ++|||||||+||+++|.+|++..++.+|+|||+++++.|.|+++.+.+|.                              
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~------------------------------   52 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGD------------------------------   52 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTS------------------------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCC------------------------------
Confidence            57999999999999999999987778999999988776666554444433                              


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEeeCEE
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYM  627 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd~l  627 (706)
                                                      ...+++..+++.+.+.|++|++++|++||+++++|++.+|+++.||+|
T Consensus        53 --------------------------------~~~~~~~~~~~~~~~~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~L  100 (401)
T 3vrd_B           53 --------------------------------RELASLRVGYDGLRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRC  100 (401)
T ss_dssp             --------------------------------SCGGGGEECSHHHHHTTCEEECSCEEEEETTTTEEEETTSCEEECSEE
T ss_pred             --------------------------------CCHHHHhhCHHHHHHCCCEEEEeEEEEEEccCcEEEecccceeeccee
Confidence                                            333444455556666799999999999999999999999999999999


Q ss_pred             EEecCcccCccCCCCchhhh
Q psy8791         628 IVASGIQMYYDRVKGGTTSL  647 (706)
Q Consensus       628 ViAtGs~~~~p~i~G~~~~~  647 (706)
                      |||||+++.++++||+++..
T Consensus       101 viAtG~~~~~~~i~G~~e~~  120 (401)
T 3vrd_B          101 VVAPGIDLLYDKIEGYSEAL  120 (401)
T ss_dssp             EECCCEEECGGGSBTCCSGG
T ss_pred             eeccCCccccCCccCchhhc
Confidence            99999999999999987544

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.65  E-value=2.3e-16  Score=170.43  Aligned_cols=159  Identities=14%  Similarity=0.172  Sum_probs=109.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      ++|||||||+||+++|..|+++..+.+|+|||+++++.|...                |+                    
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~----------------~l--------------------   46 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP----------------SL--------------------   46 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG----------------GG--------------------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc----------------cc--------------------
Confidence            489999999999999999999855567999999887665321                00                    


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEec-eEEEEEcCCCeEEcCCCcEEeeCE
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVSFDPENNRVRTQAGSEISYEY  626 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~yd~  626 (706)
                                              +..+..+....+++......+.+.+++++.+ +|+.+|++.++|.+.+|+++.||+
T Consensus        47 ------------------------~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~  102 (410)
T 3ef6_A           47 ------------------------SKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADA  102 (410)
T ss_dssp             ------------------------GTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSE
T ss_pred             ------------------------cHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCE
Confidence                                    0001111111111211111222368999777 999999999999999999999999


Q ss_pred             EEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         627 MIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       627 lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||||||++|+.|++||.+  ...+..++...+..........+++++||     |+|+|..+.++..
T Consensus       103 lvlAtG~~p~~~~ipG~~--~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  167 (410)
T 3ef6_A          103 IVIATGSRARTMALPGSQ--LPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGL  167 (410)
T ss_dssp             EEECCCEEECCCCCTTTT--STTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEccCCcccCCCCCCcc--ccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            999999999999999976  33333333332222222223357889999     8999999877643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.65  E-value=9.4e-17  Score=175.13  Aligned_cols=162  Identities=16%  Similarity=0.310  Sum_probs=112.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhh-cCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSR-LGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~-~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      .|++|||||||+||+++|..|++. .++.+|+|||+++++.|.|+++.+..|.                           
T Consensus         3 ~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~---------------------------   55 (437)
T 3sx6_A            3 GSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGW---------------------------   55 (437)
T ss_dssp             TSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTS---------------------------
T ss_pred             CCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCc---------------------------
Confidence            478999999999999999999982 2378999999988776666543332222                           


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                         ...+++...+..+++ .|++++.++|++||+++++|++++|+++.
T Consensus        56 -----------------------------------~~~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~  100 (437)
T 3sx6_A           56 -----------------------------------KERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVH  100 (437)
T ss_dssp             -----------------------------------SCHHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEE
T ss_pred             -----------------------------------cCHHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEE
Confidence                                               222233344444443 68999999999999999999999998999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchh-hh--ccCccEEEE-c----------HHHHHHHHHHHhh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVT-WE--QKHKQYQLV-S----------PEIRAKAYDLTKR  689 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~-~~--~~~k~vvVi-G----------~E~A~~l~~~~~~  689 (706)
                      ||+||||||++|+.|++||+++..+....+....+...... +.  ...++++|| |          +|+|..+++.+++
T Consensus       101 ~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~  180 (437)
T 3sx6_A          101 YDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKK  180 (437)
T ss_dssp             CSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999998743122222222222111111 11  113455666 2          9999888777654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.63  E-value=5.5e-16  Score=167.94  Aligned_cols=160  Identities=18%  Similarity=0.158  Sum_probs=109.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .+++|||||||+||+++|..|+++..+.+|+|||+++.+.|...                |+                  
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~----------------~l------------------   53 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP----------------PL------------------   53 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG----------------GG------------------
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc----------------cC------------------
Confidence            46799999999999999999999855566999999887654321                00                  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhh-ccCCcEEEec-eEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVKD-KIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                +..+..+....+++......+ .+.+++++.+ +|+.+|++.++|.+.+|+++.
T Consensus        54 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~  107 (415)
T 3lxd_A           54 --------------------------SKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIE  107 (415)
T ss_dssp             --------------------------GTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTSCEEE
T ss_pred             --------------------------CHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEE
Confidence                                      000111111112222222222 2368999776 899999999999999999999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhcc-CccEEEE-----cHHHHHHHHHHH
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQK-HKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      ||+||||||++|+.|++||.+  ...+..++...+.......... +++++||     |+|+|..+.++.
T Consensus       108 ~d~lvlAtG~~~~~~~i~g~~--~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g  175 (415)
T 3lxd_A          108 YGKLIWATGGDPRRLSCVGAD--LAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFG  175 (415)
T ss_dssp             EEEEEECCCEECCCCBTTSSC--CBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             eeEEEEccCCccCCCCCCCcc--ccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcC
Confidence            999999999999999999976  3333333322222222222233 7899999     899998887764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.62  E-value=1.2e-15  Score=164.67  Aligned_cols=159  Identities=17%  Similarity=0.191  Sum_probs=109.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      ++|||||||+||+++|..|++...+.+|+|||++++..|...                |+                    
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~----------------~l--------------------   45 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP----------------PL--------------------   45 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG----------------GG--------------------
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc----------------cC--------------------
Confidence            479999999999999999999855559999999886654321                00                    


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhh-hccCCcEEEeceEEEEEcCCCeEEcCCCcEEeeCE
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEY  626 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd~  626 (706)
                                              +..+..+....+++...... +.+.+++++.++|+.+|++.++|.+.+|+++.||+
T Consensus        46 ------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g~~~~~d~  101 (404)
T 3fg2_P           46 ------------------------SKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGH  101 (404)
T ss_dssp             ------------------------GTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEEEETTTTEEEESSSCEEECSE
T ss_pred             ------------------------CHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEEEECCCCEEEECCCCEEECCE
Confidence                                    00001111111222222222 22368999779999999999999999999999999


Q ss_pred             EEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         627 MIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       627 lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+|||++|+.|++||.+  ...+..++...+..........+++++||     |+|+|..+.++..
T Consensus       102 lvlAtG~~p~~~~i~g~~--~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  166 (404)
T 3fg2_P          102 LVLATGARNRMLDVPNAS--LPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGL  166 (404)
T ss_dssp             EEECCCEEECCCCSTTTT--STTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEeeCCCccCCCCCCCC--CCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            999999999999999975  33333333332222222333457889999     8999988876643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.59  E-value=1.1e-15  Score=162.30  Aligned_cols=150  Identities=15%  Similarity=0.207  Sum_probs=99.5

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCC-cceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~-~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      |++|||||+||+++|..|++.  + +|+|||+++...|. ++++....                                
T Consensus        10 ~vvIIGgG~AGl~aA~~l~~~--g-~V~lie~~~~~~~~~~~l~~~~~--------------------------------   54 (367)
T 1xhc_A           10 KVVIVGNGPGGFELAKQLSQT--Y-EVTVIDKEPVPYYSKPMLSHYIA--------------------------------   54 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT--S-EEEEECSSSSCCCCSTTHHHHHT--------------------------------
T ss_pred             cEEEECCcHHHHHHHHHHhhc--C-CEEEEECCCCCccccchhHHHHh--------------------------------
Confidence            899999999999999999887  5 99999998765432 11110000                                


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEec-eEEEEEcCCCeEEcCCCcEEeeC
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD-KIVSFDPENNRVRTQAGSEISYE  625 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~yd  625 (706)
                                                    +....+++.....+++ +.|++++.+ +|+++|+++++|. .+|+++.||
T Consensus        55 ------------------------------g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d  103 (367)
T 1xhc_A           55 ------------------------------GFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYD  103 (367)
T ss_dssp             ------------------------------TSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETTTTEEE-ESSCEEECS
T ss_pred             ------------------------------CCCCHHHhccCCHHHHHhCCcEEEECCEEEEEECCCCEEE-ECCcEEECC
Confidence                                          0011111112222222 258999877 6999999998888 778899999


Q ss_pred             EEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         626 YMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       626 ~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +||||||++|+.|++||.+    .+..++...+..........+++++||     |+|+|..|+++..
T Consensus       104 ~lViATGs~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  167 (367)
T 1xhc_A          104 TLVLATGARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGY  167 (367)
T ss_dssp             EEEECCCEEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            9999999999999999932    222122211111111111235889999     8999999887653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.59  E-value=1.3e-15  Score=166.73  Aligned_cols=160  Identities=18%  Similarity=0.259  Sum_probs=104.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      |+++||||||||+||+++|..|++..++.+|+|||+++...|.+. ++....+                           
T Consensus         1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~---------------------------   53 (449)
T 3kd9_A            1 MSLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEG---------------------------   53 (449)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---------------------------------------
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCC---------------------------
Confidence            346799999999999999999999877889999999887654432 1111110                           


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCccccccccccccccccc-chhhhc-cCCcEEEec-eEEEEEcCCCeEEcCCC-
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR-PMKSVL-PSGATWVKD-KIVSFDPENNRVRTQAG-  619 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~gv~~~~~-~v~~id~~~~~V~~~~g-  619 (706)
                                                         ....+++.. ....+. ..+++++.+ +|+++|++.+.|.+.++ 
T Consensus        54 -----------------------------------~~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~   98 (449)
T 3kd9_A           54 -----------------------------------LSTPDKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGE   98 (449)
T ss_dssp             -----------------------------------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSSE
T ss_pred             -----------------------------------CCCHHHhhhcCHHHHHHhcCcEEEecCEEEEEecCCCEEEECCce
Confidence                                               000111111 112221 258899776 89999998888888777 


Q ss_pred             cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhc--cCccEEEE-----cHHHHHHHHHHHh
Q psy8791         620 SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQ--KHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       620 ~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .++.||+||||||++|..|++||.+  ...+...+...+.........  .+++++||     |+|+|..++++..
T Consensus        99 ~~~~~d~lviAtG~~p~~p~i~G~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  172 (449)
T 3kd9_A           99 KSYEWDYLVFANGASPQVPAIEGVN--LKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGK  172 (449)
T ss_dssp             EEEECSEEEECCCEEECCCSCBTTT--STTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEcCEEEECCCCCCCCCCCCCCC--CCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            4899999999999999999999976  222222222222222222222  56789999     8999998887654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.58  E-value=2.5e-15  Score=164.54  Aligned_cols=158  Identities=16%  Similarity=0.238  Sum_probs=106.6

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcce-EEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMF-TLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~-~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      +||||||||+||+++|.+|+++.++.+|+|||+++...|.+.. +...++.                             
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~-----------------------------   53 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHT-----------------------------   53 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCC-----------------------------
Confidence            5899999999999999999998778999999998876654421 1111100                             


Q ss_pred             CCceEEEeeecceecCCCcccccCccccccccccccccccc-chhhhccCCcEE-EeceEEEEEcCCCeEEc---CCCcE
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR-PMKSVLPSGATW-VKDKIVSFDPENNRVRT---QAGSE  621 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gv~~-~~~~v~~id~~~~~V~~---~~g~~  621 (706)
                                                      ....+++.. ....+.+.++++ ++.+|+.+|++.+.|.+   .++++
T Consensus        54 --------------------------------~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~  101 (452)
T 3oc4_A           54 --------------------------------INELHEARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQW  101 (452)
T ss_dssp             ---------------------------------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEE
T ss_pred             --------------------------------CCCHHHhhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEE
Confidence                                            000111111 112222358888 56799999999998866   35678


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++|..|++||.+.  ..+...+...+..........+++++||     |+|+|..++++..
T Consensus       102 ~~~d~lviAtG~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  171 (452)
T 3oc4_A          102 YSYDKLILATGASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKK  171 (452)
T ss_dssp             EECSEEEECCCCCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEcCEEEECCCcccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            999999999999999999999762  2333333333333334445578999999     8999998887654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.58  E-value=3.3e-15  Score=155.31  Aligned_cols=155  Identities=18%  Similarity=0.151  Sum_probs=97.5

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeecccccccccc--ccccccCCCCccccccccccc
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSR--RPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |||+|||||+||++||.+|+++  +.+|+|||++..           ||.|....+.  .|.+.                
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~--g~~V~liE~~~~-----------gG~~~~~~~i~~~p~~~----------------   57 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRA--NLKTVMIERGIP-----------GGQMANTEEVENFPGFE----------------   57 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-----------TGGGGGCSCBCCSTTCS----------------
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC-----------CCeeecccccCCcCCcc----------------
Confidence            8999999999999999999998  899999997431           3333211110  01000                


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccc-hhhhccCCcEE-EeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP-MKSVLPSGATW-VKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~-~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                  .     ....++... .....+.+..+ ....+...+.....+...+++++.
T Consensus        58 ----------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (312)
T 4gcm_A           58 ----------------------------M-----ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELT  104 (312)
T ss_dssp             ----------------------------S-----BCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEE
T ss_pred             ----------------------------c-----cchHHHHHHHHHHHhhccccccceeeeeeeeeecceeeccCCeEEE
Confidence                                        0     000111111 11122234445 334455566666667777888999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ||+||||||++|+.|++||.++....     ..............+|+|+||     |+|+|..|++++.+
T Consensus       105 ~d~liiAtGs~~~~~~ipG~~~~~~~-----~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~  170 (312)
T 4gcm_A          105 AKAVIIATGAEYKKIGVPGEQELGGR-----GVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADK  170 (312)
T ss_dssp             EEEEEECCCEEECCCCCTTTTTTBTT-----TEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSE
T ss_pred             eceeEEcccCccCcCCCCChhhhCCc-----cEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCE
Confidence            99999999999999999998743221     111111122233467899999     89999998876643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.57  E-value=5.3e-15  Score=159.60  Aligned_cols=156  Identities=19%  Similarity=0.232  Sum_probs=103.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++||+|||||+||+++|..|++...+.+|+|||+++...|...                ++.                  
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~----------------~~~------------------   52 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP----------------PLS------------------   52 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG----------------GGG------------------
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC----------------CCC------------------
Confidence            4799999999999999999999855557999999776543210                000                  


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEec-eEEEEEcCCCeEEcCCCcEEeeC
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVSFDPENNRVRTQAGSEISYE  625 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~yd  625 (706)
                                                ..+..+.. .+++...  .+.+.+++++.+ +|+++|++.++|++.+|+++.||
T Consensus        53 --------------------------~~~~~~~~-~~~~~~~--~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d  103 (408)
T 2gqw_A           53 --------------------------KDFMAHGD-AEKIRLD--CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYG  103 (408)
T ss_dssp             --------------------------THHHHHCC-GGGSBCC--CTTSCSCEEEETCCEEEEETTTTEEEETTSCEEECS
T ss_pred             --------------------------HHHhCCCc-hhhhhHH--HHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECC
Confidence                                      00000000 0000011  222358999777 49999999999999999999999


Q ss_pred             EEEEecCcccCccCC-CCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         626 YMIVASGIQMYYDRV-KGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       626 ~lViAtGs~~~~p~i-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +||||||++|..|++ ||.+   ..+..++...+..........+++++||     |+|+|..|+++..
T Consensus       104 ~lviAtG~~~~~~~i~~G~~---~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  169 (408)
T 2gqw_A          104 TLVLATGAAPRALPTLQGAT---MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGV  169 (408)
T ss_dssp             EEEECCCEEECCCGGGTTCS---SCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCCCCCccCCCC---CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            999999999999999 9975   2222222211111111112247899999     8999999887654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.56  E-value=4.6e-15  Score=161.23  Aligned_cols=159  Identities=14%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeecccccccccccccc-ccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK-SVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~  545 (706)
                      .+||||||||+||+++|..|++...+.+|+|||+++...|..                .++. .++..            
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~----------------~~l~~~~~~~------------   55 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL----------------PPLSKAYLAG------------   55 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS----------------GGGGTTTTTT------------
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcC----------------CCCcHHHhCC------------
Confidence            469999999999999999999984445899999877544321                0110 00000            


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhh-hccCCcEEEec-eEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKD-KIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                       ....+++.....+ +.+.|++++.+ +|+++|++.++|.+.+|+++.
T Consensus        56 ---------------------------------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~  102 (431)
T 1q1r_A           56 ---------------------------------KATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALD  102 (431)
T ss_dssp             ---------------------------------CSCSGGGBSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEE
T ss_pred             ---------------------------------CCChHHhcccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEE
Confidence                                             0001111111112 22368998764 789999998999999998999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcc---cccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLED---RGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||+|||++|..|++||.+  ...   +..++...+..........+++++||     |+|+|..|.++..
T Consensus       103 ~d~lviAtG~~p~~~~i~G~~--~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~  173 (431)
T 1q1r_A          103 YDRLVLATGGRPRPLPVASGA--VGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANM  173 (431)
T ss_dssp             CSEEEECCCEEECCCGGGTTH--HHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEcCCCCccCCCCCCcc--cCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            999999999999999999976  222   22222221211122222357899999     8999999887654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.56  E-value=3.8e-15  Score=154.87  Aligned_cols=168  Identities=15%  Similarity=0.172  Sum_probs=103.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      ..||||+|||||+||++||.+++++  +.+|+|||++..           +|.|..  .+.|.++++..           
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~--g~~v~liE~~~~-----------gg~~~~--G~~~~~~~i~~-----------   55 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRS--SLKPVMYEGFMA-----------GGVAAG--GQLTTTTIIEN-----------   55 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSG-----------GGCCTT--CGGGGSSEECC-----------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC-----------CCcccC--CCcCChHHhhh-----------
Confidence            4589999999999999999999998  889999998543           122211  11222221110           


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEeceEEEEEcCCC--eEEcCCCcE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENN--RVRTQAGSE  621 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~~--~V~~~~g~~  621 (706)
                                              .+.++.   + ....++........ ..++++...++..+.....  .+.+.++.+
T Consensus        56 ------------------------~~g~~~---~-i~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (314)
T 4a5l_A           56 ------------------------FPGFPN---G-IDGNELMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKE  107 (314)
T ss_dssp             ------------------------STTCTT---C-EEHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCE
T ss_pred             ------------------------ccCCcc---c-CCHHHHHHHHHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeE
Confidence                                    000000   0 01112222222222 2577888888887776554  456778889


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +.||+||||||++|+.|++||.+......  +..... .........+++++||     |+|+|..|++++.+
T Consensus       108 ~~~~~liiATG~~~~~~~ipG~~~~~~~~--~~~~~~-~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~  177 (314)
T 4a5l_A          108 VLTKSVIIATGATAKRMHVPGEDKYWQNG--VSACAI-CDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSK  177 (314)
T ss_dssp             EEEEEEEECCCEEECCCCCTTHHHHBTTT--EESCHH-HHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSE
T ss_pred             EEEeEEEEcccccccccCCCccccccccc--eeeehh-hhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCe
Confidence            99999999999999999999987432211  111101 0111122356889999     99999998877654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.54  E-value=2.8e-14  Score=147.64  Aligned_cols=146  Identities=12%  Similarity=0.196  Sum_probs=88.7

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI  542 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~  542 (706)
                      .+|+.|||+|||||+||++||.++++.  +.+|+|||++..           ||....+....+                
T Consensus         2 n~M~~yDVvIIGaGpAGlsAA~~lar~--g~~v~lie~~~~-----------gg~~~~~~~~~~----------------   52 (304)
T 4fk1_A            2 NAMKYIDCAVIGAGPAGLNASLVLGRA--RKQIALFDNNTN-----------RNRVTQNSHGFI----------------   52 (304)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSCC-----------GGGGSSCBCCST----------------
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCC-----------CCeeeeecCCcc----------------
Confidence            467889999999999999999999987  789999998542           121110000000                


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCccccccccccccccccc-chhhhcc-CCcEEEeceEEEEEcCC---CeEEcC
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR-PMKSVLP-SGATWVKDKIVSFDPEN---NRVRTQ  617 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~gv~~~~~~v~~id~~~---~~V~~~  617 (706)
                                        .          .+    + ....++.. ...+..+ .++.++..++..++...   .+|.+.
T Consensus        53 ------------------~----------~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   99 (304)
T 4fk1_A           53 ------------------T----------RD----G-IKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTK   99 (304)
T ss_dssp             ------------------T----------CT----T-BCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEET
T ss_pred             ------------------C----------CC----C-CCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEEC
Confidence                              0          00    0 00011111 1222233 35677888887776543   367888


Q ss_pred             CCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE
Q psy8791         618 AGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV  675 (706)
Q Consensus       618 ~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi  675 (706)
                      +|+++.||+||||||++|+.|++||.++....     ..............+++++||
T Consensus       100 ~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~-----~v~~~~~~~~~~~~~~~~~VI  152 (304)
T 4fk1_A          100 DHTKYLAERVLLATGMQEEFPSIPNVREYYGK-----SLFSCPYCDGWELKDQPLIII  152 (304)
T ss_dssp             TCCEEEEEEEEECCCCEEECCSCTTHHHHBTT-----TEESCHHHHSGGGTTSCEEEE
T ss_pred             CCCEEEeCEEEEccCCccccccccCccccccc-----eeeeccccchhHhcCCceeee
Confidence            99999999999999999999999998753321     222222222333456777777

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.53  E-value=1.3e-14  Score=160.46  Aligned_cols=189  Identities=19%  Similarity=0.226  Sum_probs=109.2

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      ++.+++|||||||+||+++|..|++..++.+|+|||+++++.|...               .+.|.++........... 
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~---------------~lsk~l~~~~~~~~~~~~-   71 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP---------------PLSKELWFSDDPNVTKTL-   71 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG---------------GGGTGGGCC--CTHHHHC-
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC---------------CCCHHhhcCCccchhhcc-
Confidence            3456899999999999999999998877899999999877654221               112222221100000000 


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEec-eEEEEEcCCCeEEcCCCcEE
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVSFDPENNRVRTQAGSEI  622 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i  622 (706)
                      .+ ..+.          .......+.+. .++.    ..    ..+....+.|++++.+ +|+.||++.++|.+.+|+++
T Consensus        72 ~~-~~~~----------~~~~~~~~~~~-~~~~----~~----~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i  131 (493)
T 1m6i_A           72 RF-KQWN----------GKERSIYFQPP-SFYV----SA----QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQI  131 (493)
T ss_dssp             EE-ECTT----------SCEEESBSSCG-GGSB----CT----TTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEE
T ss_pred             cc-cccc----------cccccccccch-Hhhc----ch----hhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEE
Confidence            00 0000          00000000000 0000    00    0111112358999776 89999999999999999999


Q ss_pred             eeCEEEEecCcccCccCCCCch--hhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGT--TSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|+.|+++|..  ...+.+..++...+..........+++|+||     |+|+|..|++.++
T Consensus       132 ~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~  204 (493)
T 1m6i_A          132 TYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKAR  204 (493)
T ss_dssp             EEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHH
T ss_pred             ECCEEEECCCCCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhh
Confidence            9999999999999877765531  1122222222222211122223357899999     9999999988654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.53  E-value=1.8e-15  Score=167.59  Aligned_cols=196  Identities=13%  Similarity=0.087  Sum_probs=121.2

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      ||+||||+|+||+.+|.++++.  +.+|+|||++....+..  ....||.| ++..|+|.|.|+.++..+......+...
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~--G~kValIE~~~~~~~~~--k~~lGGtC-ln~GCIPsK~L~~aa~~~~~~~~~~~~~  117 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAH--GARVLLFDYVKPSSQGT--KWGIGGTC-VNVGCVPKKLMHYAGHMGSIFKLDSKAY  117 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT--TCCEEEECCCCCCTTCC--CCCSSHHH-HHHSHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccccccccc--cCCCCCcc-cccchHHHHHHHHHHHHHHHHHhhhHhc
Confidence            8999999999999999999998  89999999754321100  01124444 4566678888777654332221111111


Q ss_pred             CceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcC----CCcE
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQ----AGSE  621 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~----~g~~  621 (706)
                      ++.+.        ...      ..|..+.... ...+.+...+...++ .+|+++.+.+.++++....|...    ++++
T Consensus       118 Gi~~~--------~~~------~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~  183 (542)
T 4b1b_A          118 GWKFD--------NLK------HDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEET  183 (542)
T ss_dssp             TEEEE--------EEE------ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEE
T ss_pred             CcccC--------ccc------ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEE
Confidence            11111        000      0000000000 011122223333333 69999999999999875555433    3467


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhhh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKRK  690 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~~  690 (706)
                      +.+|++||||||+|..|+.++.+..        ...++...+.+...|++++||     |+|+|..++++..++
T Consensus       184 i~a~~iiIATGs~P~~P~~~~~~~~--------~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~V  249 (542)
T 4b1b_A          184 VTGKYILIATGCRPHIPDDVEGAKE--------LSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDV  249 (542)
T ss_dssp             EEEEEEEECCCEEECCCSSSBTHHH--------HCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCE
T ss_pred             EeeeeEEeccCCCCCCCCcccCCCc--------cccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeE
Confidence            9999999999999998865554321        123444455666789999999     999999999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.52  E-value=1.5e-14  Score=159.31  Aligned_cols=165  Identities=15%  Similarity=0.165  Sum_probs=95.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      ++++|+|||||+||+++|..|+++.++.+|+|||+++.+.|.+. ++...+|.........                   
T Consensus         2 ~~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~-------------------   62 (472)
T 3iwa_A            2 SLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQ-------------------   62 (472)
T ss_dssp             --CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--------------------------------------------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhc-------------------
Confidence            35699999999999999999999877899999999988766542 2222222110000000                   


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEE-EeceEEEEEcCCCeEEcCC---C
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATW-VKDKIVSFDPENNRVRTQA---G  619 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~-~~~~v~~id~~~~~V~~~~---g  619 (706)
                                       +                  ...++......+.+ .++++ ++.+|+.+|++.+.+.+.+   |
T Consensus        63 -----------------~------------------~~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g  107 (472)
T 3iwa_A           63 -----------------A------------------TPYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTG  107 (472)
T ss_dssp             -----------------------------------------------------CEEECSEEEEEEETTTTEEEEEETTTC
T ss_pred             -----------------c------------------ccchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCC
Confidence                             0                  00001111222222 47887 5689999999999887654   6


Q ss_pred             c--EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhh--ccCccEEEE-----cHHHHHHHHHH
Q psy8791         620 S--EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWE--QKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       620 ~--~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                      +  ++.||+||||||++|..|++||.+  ...+..++...+........  ..+++++||     |+|+|..+.++
T Consensus       108 ~~~~~~~d~lviAtG~~p~~p~i~G~~--~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~  181 (472)
T 3iwa_A          108 ERRTLKYDKLVLALGSKANRPPVEGMD--LAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADM  181 (472)
T ss_dssp             CEEEEECSEEEECCCEEECCCSCTTTT--SBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECCEEEEeCCCCcCCCCCCCCC--CCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence            5  799999999999999999999986  23222222211111111111  347899999     89999988877

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.52  E-value=9.7e-15  Score=158.80  Aligned_cols=156  Identities=16%  Similarity=0.165  Sum_probs=102.1

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCc-ceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~-~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      ||||||||+||++||.+|++..++.+|+|||+++++.|.. +++...++...                            
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~----------------------------   53 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVE----------------------------   53 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSC----------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCcc----------------------------
Confidence            7999999999999999999987778999999988766532 11111111000                            


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEE-eceEEEEEcCCCeEEcCC-----Cc
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWV-KDKIVSFDPENNRVRTQA-----GS  620 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~-~~~v~~id~~~~~V~~~~-----g~  620 (706)
                                   +.                   ...+......+++ .++++. ..+|+.||++.+.+.+.+     +.
T Consensus        54 -------------~~-------------------~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~  101 (437)
T 4eqs_A           54 -------------DR-------------------RYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQF  101 (437)
T ss_dssp             -------------CG-------------------GGTBCCCHHHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -------------ch-------------------hhhhhcCHHHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceE
Confidence                         00                   0001111222222 588884 568999999999876532     24


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchh--hhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVT--WEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ++.||+||||||++|+.|++||...     ..++...+......  ....+++++||     |+|+|..++++..+
T Consensus       102 ~~~yd~lVIATGs~p~~p~i~g~~~-----~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~  172 (437)
T 4eqs_A          102 EESYDKLILSPGASANSLGFESDIT-----FTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLH  172 (437)
T ss_dssp             EEECSEEEECCCEEECCCCCCCTTE-----ECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCE
T ss_pred             EEEcCEEEECCCCccccccccCceE-----EeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCc
Confidence            6899999999999999999988542     11222222222111  12357889999     99999999888754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.51  E-value=1.7e-14  Score=155.84  Aligned_cols=117  Identities=20%  Similarity=0.363  Sum_probs=89.9

Q ss_pred             cccccccCcchhHHHHHHHHHh-hcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTS-RLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~-~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |++|||||||+||+++|..|++ ..++.+|+|||+++.+.|.+.++....                              
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~------------------------------   50 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAI------------------------------   50 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCS------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhccc------------------------------
Confidence            5689999999999999999998 334789999999887665554322211                              


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcE---
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSE---  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~---  621 (706)
                                                      +....+++...+.+.++ .|++++.++|+.++++.++|++.+++.   
T Consensus        51 --------------------------------~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~   98 (409)
T 3h8l_A           51 --------------------------------GVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMA   98 (409)
T ss_dssp             --------------------------------SCCCCCCEEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEE
T ss_pred             --------------------------------CCcCHHHHHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccc
Confidence                                            11222333444555544 589999999999999999998887754   


Q ss_pred             -EeeCEEEEecCcccCccCCCCchh
Q psy8791         622 -ISYEYMIVASGIQMYYDRVKGGTT  645 (706)
Q Consensus       622 -i~yd~lViAtGs~~~~p~i~G~~~  645 (706)
                       +.||+||+|||++|..|++||+++
T Consensus        99 ~~~~d~lViAtG~~~~~~~ipG~~~  123 (409)
T 3h8l_A           99 EEEYDYVIVGIGAHLATELVKGWDK  123 (409)
T ss_dssp             EEECSEEEECCCCEECGGGSBTHHH
T ss_pred             eeeCCEEEECCCCCcCccCCCChhh
Confidence             999999999999999999999874

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.50  E-value=5.2e-14  Score=144.87  Aligned_cols=153  Identities=14%  Similarity=0.170  Sum_probs=101.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      |+||+|||||+||+++|..|++.  +.+|+|||+++.....+..           ..                       
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~~~~~~~-----------~~-----------------------   45 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA--RKNILLVDAGERRNRFASH-----------SH-----------------------   45 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCCGGGGCSC-----------CC-----------------------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCcccccchh-----------hc-----------------------
Confidence            47999999999999999999998  7899999986532100000           00                       


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-C-CcEEEeceEEEEEcCCC--eEEcCCCcEE
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-S-GATWVKDKIVSFDPENN--RVRTQAGSEI  622 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-gv~~~~~~v~~id~~~~--~V~~~~g~~i  622 (706)
                                                .+.........++...+.+.+. . +++++.++|++++++..  .|.+.+|+++
T Consensus        46 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~   99 (297)
T 3fbs_A           46 --------------------------GFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRE   99 (297)
T ss_dssp             --------------------------SSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTSCEE
T ss_pred             --------------------------CCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCCEE
Confidence                                      0000000111222233333333 3 78999999999998754  6778888899


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                      .||+||+|||+.|..|++||.+.....     ..............+++++||     |+|+|..|.++
T Consensus       100 ~~d~vviAtG~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~  163 (297)
T 3fbs_A          100 TAGRLILAMGVTDELPEIAGLRERWGS-----AVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDW  163 (297)
T ss_dssp             EEEEEEECCCCEEECCCCBTTGGGBTT-----TEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGT
T ss_pred             EcCEEEECCCCCCCCCCCCCchhhcCC-----eeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhc
Confidence            999999999999999999998753321     112221222233467899999     88998887654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.49  E-value=2.7e-14  Score=159.30  Aligned_cols=192  Identities=18%  Similarity=0.171  Sum_probs=112.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||||||||+||+++|.+|++.  +.+|+|||+++...          |.+..+..  |-          ..-++.+.
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~--G~~v~iiE~~~~~G----------Gtw~~~~y--pg----------~~~dv~s~   75 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQ--GLTVRAFEAASGVG----------GVWYWNRY--PG----------ARCDVESI   75 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC----------THHHHCCC--TT----------CBCSSCTT
T ss_pred             CCCCEEEECchHHHHHHHHHHHhC--CCCEEEEeCCCCCC----------CccccCCC--CC----------ceeCCCch
Confidence            457999999999999999999986  78999999976532          22111100  00          00000000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCc--EE-EeceEEEEEcCCC----eEEcC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGA--TW-VKDKIVSFDPENN----RVRTQ  617 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv--~~-~~~~v~~id~~~~----~V~~~  617 (706)
                      ...+.+         .+.  ....+.+..   ......++...+....+ .++  ++ ++.+|+.++.+..    +|++.
T Consensus        76 ~y~~~f---------~~~--~~~~~~~~~---~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~  141 (549)
T 4ap3_A           76 DYSYSF---------SPE--LEQEWNWSE---KYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTD  141 (549)
T ss_dssp             TSSCCS---------CHH--HHHHCCCSS---SSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEET
T ss_pred             hccccc---------ccc--cccCCCCcc---CCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEEC
Confidence            000000         000  000000000   00111222222222222 344  44 5678999987665    78888


Q ss_pred             CCcEEeeCEEEEecC--cccCccCCCCchhhhcccccccccccCccc-hhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         618 AGSEISYEYMIVASG--IQMYYDRVKGGTTSLEDRGKMRGVSDGFST-VTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       618 ~g~~i~yd~lViAtG--s~~~~p~i~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      +|+++.||+||+|||  +.|..|++||++.+...     .+++..+. ...+..+|+|+||     |+|+|.+|++.+.+
T Consensus       142 ~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~-----~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~  216 (549)
T 4ap3_A          142 RGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGD-----IVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQ  216 (549)
T ss_dssp             TCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSE-----EEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSE
T ss_pred             CCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCc-----eEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCE
Confidence            999999999999999  89999999998754332     12222222 2334578999999     99999999988765


Q ss_pred             --hhhhhcccccc
Q psy8791         690 --KMKKEAQWIRF  700 (706)
Q Consensus       690 --~~~~~~~~~~~  700 (706)
                        .+.+..+|+-+
T Consensus       217 Vtv~~r~~~~ilp  229 (549)
T 4ap3_A          217 LFVFQRSANYSIP  229 (549)
T ss_dssp             EEEEESSCCCEEE
T ss_pred             EEEEECCCCcccc
Confidence              35566666543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.49  E-value=2.3e-14  Score=156.92  Aligned_cols=160  Identities=15%  Similarity=0.143  Sum_probs=104.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcce-EEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMF-TLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~-~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      +||||||||+||+++|..|++..++.+|+|||+++...|.+.. +...++..                            
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~----------------------------   52 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEI----------------------------   52 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCB----------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCc----------------------------
Confidence            4899999999999999999998778999999998765432210 00000000                            


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEE-EeceEEEEEcCCCeEEcCC-----C
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATW-VKDKIVSFDPENNRVRTQA-----G  619 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~-~~~~v~~id~~~~~V~~~~-----g  619 (706)
                                    .                 ....+++.......+ +.|+++ ...+|.++|++.++|.+.+     +
T Consensus        53 --------------~-----------------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~  101 (452)
T 2cdu_A           53 --------------K-----------------NNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEE  101 (452)
T ss_dssp             --------------G-----------------GGCGGGGBSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCE
T ss_pred             --------------c-----------------cCCHHHhhhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCce
Confidence                          0                 000111111112222 358998 5557999998888887753     4


Q ss_pred             cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         620 SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       620 ~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +++.||+||||||++|..|++||.+  ...+..++.+.+..........+++++||     |+|+|..++++..
T Consensus       102 ~~~~~d~lviAtGs~p~~p~i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  173 (452)
T 2cdu_A          102 KTEAYDKLIMTTGSKPTVPPIPGID--SSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNY  173 (452)
T ss_dssp             EEEECSEEEECCCEEECCCCCTTTT--STTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             EEEECCEEEEccCCCcCCCCCCCCC--CCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCC
Confidence            6799999999999999999999976  22232233322222333344568899999     8999998876543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.49  E-value=8.3e-15  Score=161.18  Aligned_cols=187  Identities=17%  Similarity=0.167  Sum_probs=109.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|.+|++.  +.+|+|||++. .          ||.|. +..+.|.|.++.+...+.......+
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~-~----------GG~~~-~~g~ip~k~l~~~~~~~~~~~~~~~   68 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQ--GAQVTLIERGT-I----------GGTCV-NVGCVPSKIMIRAAHIAHLRRESPF   68 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS-T----------THHHH-HHSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCC-C----------Ccccc-CCCccchHHHHHHHHHHHHHhhhhh
Confidence            467999999999999999999997  78999999862 1          33332 2333555544433211100000000


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccccc-cccccc-chhhhcc-C-CcEEEeceEEEEEcCCCeEEcCCC--
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKK-LSDSRR-PMKSVLP-S-GATWVKDKIVSFDPENNRVRTQAG--  619 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~-gv~~~~~~v~~id~~~~~V~~~~g--  619 (706)
                      ..++           ....   ....+..+...... .+.+.. .+..+++ . +++++.+++..+|+...+|.+.+|  
T Consensus        69 ~~g~-----------~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~  134 (467)
T 1zk7_A           69 DGGI-----------AATV---PTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGE  134 (467)
T ss_dssp             TTTS-----------CCCC---CCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSE
T ss_pred             cCCc-----------cCCC---CccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCce
Confidence            0000           0000   00000000000000 000110 1223333 4 899999999999987677777788  


Q ss_pred             cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         620 SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       620 ~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +++.||+||||||++|..|++||++..        .+.+..........+++++||     |+|+|..++++..
T Consensus       135 ~~~~~d~lviAtGs~p~~p~i~G~~~~--------~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  200 (467)
T 1zk7_A          135 RVVMFDRCLVATGASPAVPPIPGLKES--------PYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGS  200 (467)
T ss_dssp             EEEECSEEEECCCEEECCCCCTTTTTS--------CCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEeCEEEEeCCCCCCCCCCCCCCcC--------ceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            689999999999999999999997531        112222222333457899999     8999999887654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.49  E-value=2.3e-14  Score=161.65  Aligned_cols=159  Identities=18%  Similarity=0.188  Sum_probs=105.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |++|+|||||+||+++|..|++..++.+|+|||+++.+.|.+. ++...++                             
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~-----------------------------   51 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISG-----------------------------   51 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTS-----------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcC-----------------------------
Confidence            5689999999999999999999877899999999887665432 1000000                             


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccc-cccchhhhcc-CCcEE-EeceEEEEEcCCCeEEcCC---C
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSD-SRRPMKSVLP-SGATW-VKDKIVSFDPENNRVRTQA---G  619 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~gv~~-~~~~v~~id~~~~~V~~~~---g  619 (706)
                                                      ......+ +......+.+ .++++ ++++|+.||++.+.|.+.+   |
T Consensus        52 --------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g   99 (565)
T 3ntd_A           52 --------------------------------EIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDG   99 (565)
T ss_dssp             --------------------------------SSCCGGGGBCCCHHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTC
T ss_pred             --------------------------------CcCChHHhhccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCC
Confidence                                            0000111 1122222323 48888 4689999999999887643   5


Q ss_pred             c--EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchh--hhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         620 S--EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVT--WEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       620 ~--~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +  ++.||+||||||++|..|++||.+  ...+..++...+......  ....+++++||     |+|+|..++++..
T Consensus       100 ~~~~~~~d~lviAtG~~p~~p~ipG~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  175 (565)
T 3ntd_A          100 SEYQESYDTLLLSPGAAPIVPPIPGVD--NPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGI  175 (565)
T ss_dssp             CEEEEECSEEEECCCEEECCCCCTTCC--STTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCEEEECCCCCCCCCCCCCCC--CCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4  789999999999999999999985  222222222211111111  12357899999     8999998877653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.49  E-value=3.6e-14  Score=155.19  Aligned_cols=159  Identities=14%  Similarity=0.195  Sum_probs=102.5

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      +||||||||+||+++|..|++..++.+|+|||+++...|.+..              .|.                    
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~--------------~~~--------------------   46 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAG--------------MQL--------------------   46 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGG--------------HHH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCccccc--------------chh--------------------
Confidence            4899999999999999999998778999999998765432210              000                    


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEE-EeceEEEEEcCCCeEEcCC---Cc--
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATW-VKDKIVSFDPENNRVRTQA---GS--  620 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~-~~~~v~~id~~~~~V~~~~---g~--  620 (706)
                                                +........+++.....+.+ +.|+++ ...+|.++|++.++|.+.+   |+  
T Consensus        47 --------------------------~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~  100 (447)
T 1nhp_A           47 --------------------------YLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEER  100 (447)
T ss_dssp             --------------------------HHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             --------------------------hhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceE
Confidence                                      00000000111111112222 358998 5678899999988887753   65  


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhc--cCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQ--KHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ++.||+||||||++|..|++||.+  ...+..++...+.........  .+++++||     |+|+|..++++..
T Consensus       101 ~~~~d~lviAtG~~p~~p~i~G~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~  173 (447)
T 1nhp_A          101 VENYDKLIISPGAVPFELDIPGKD--LDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK  173 (447)
T ss_dssp             EEECSEEEECCCEEECCCCSTTTT--SBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEeCCEEEEcCCCCcCCCCCCCCC--CCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            489999999999999999999975  222222222211111112122  67899999     8999988877654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.49  E-value=6.8e-15  Score=161.70  Aligned_cols=184  Identities=19%  Similarity=0.183  Sum_probs=111.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..+||+|||||+||+++|..|++.  +.+|+|||+++..          ||.|. +..+.|.+.++.....+......  
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~--G~~V~liEk~~~~----------GG~~~-~~gciPsk~l~~~a~~~~~~~~~--   67 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKA--KYNVLMADPKGEL----------GGNCL-YSGCVPSKTVREVIQTAWRLTNI--   67 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECTTSSS----------SHHHH-HHSHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccceEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCC----------CCccc-ccCCCchHHHHHHHHHHHHHHhc--
Confidence            358999999999999999999988  8899999976543          34333 22234554444332111110000  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccc--cchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcE-
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSR--RPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSE-  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~-  621 (706)
                                     ..   ......+..+........++.  ..+...+. .+++++.+++..+|++...|.+.+|++ 
T Consensus        68 ---------------~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~  129 (466)
T 3l8k_A           68 ---------------AN---VKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEI  129 (466)
T ss_dssp             ---------------HC---SCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEE
T ss_pred             ---------------cc---CCCCcCHHHHHHHHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEE
Confidence                           00   000000110000000000111  22333333 689999999999998877888888888 


Q ss_pred             -EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 -ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 -i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                       +.||+||||||++|..|++||.+.    ...........  ..+...+++++||     |+|+|..++++..
T Consensus       130 ~~~~d~lviAtG~~p~~p~i~G~~~----~~t~~~~~~~~--~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~  196 (466)
T 3l8k_A          130 EAETRYMIIASGAETAKLRLPGVEY----CLTSDDIFGYK--TSFRKLPQDMVIIGAGYIGLEIASIFRLMGV  196 (466)
T ss_dssp             EEEEEEEEECCCEEECCCCCTTGGG----SBCHHHHHSTT--CSCCSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEecCEEEECCCCCccCCCCCCccc----eEeHHHHHHHH--HHHhhCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence             999999999999999999999762    11111111000  0223457899999     8999998887653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.49  E-value=2.8e-14  Score=152.82  Aligned_cols=159  Identities=15%  Similarity=0.169  Sum_probs=101.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||||||||+||+++|..|++...+.+|++||+++...|...                    ++..            
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~--------------------~l~~------------   50 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKP--------------------MLST------------   50 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGG--------------------GGGG------------
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcc--------------------cccH------------
Confidence            45799999999999999999999855578999998653221100                    0000            


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccccccccccc-chhhhc-cCCcEEEe-ceEEEEEcCCCeEEcCCCcEE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR-PMKSVL-PSGATWVK-DKIVSFDPENNRVRTQAGSEI  622 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~gv~~~~-~~v~~id~~~~~V~~~~g~~i  622 (706)
                                                   ........+++.. ....+. ..+++++. .+|+++|++.++|.+.++ ++
T Consensus        51 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~  100 (384)
T 2v3a_A           51 -----------------------------GFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEE-EV  100 (384)
T ss_dssp             -----------------------------TTTTTCCHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETTE-EE
T ss_pred             -----------------------------HHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECCc-EE
Confidence                                         0000001111211 223332 36899874 579999998888988654 79


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|..|++||.+  ...+...+...+..........+++++||     |+|+|..++++..
T Consensus       101 ~~d~lviAtG~~p~~p~i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~  169 (384)
T 2v3a_A          101 RYRDLVLAWGAEPIRVPVEGDA--QDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGY  169 (384)
T ss_dssp             ECSEEEECCCEEECCCCCBSTT--TTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ECCEEEEeCCCCcCCCCCCCcC--cCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999975  12222222222211111122347899999     8999999887654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.48  E-value=5e-14  Score=159.54  Aligned_cols=162  Identities=16%  Similarity=0.228  Sum_probs=107.8

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      +.+++|||||||+||++||.+|++..++.+|+|||+++.+.|.+. ++...++.                          
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~--------------------------   87 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGV--------------------------   87 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTS--------------------------
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCc--------------------------
Confidence            346799999999999999999999877899999999887665431 11111110                          


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccc-cccchhhhc-cCCcEE-EeceEEEEEcCCCeEEcC---
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSD-SRRPMKSVL-PSGATW-VKDKIVSFDPENNRVRTQ---  617 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~gv~~-~~~~v~~id~~~~~V~~~---  617 (706)
                                                         ....++ +...+..+. ..++++ ++.+|+.++++.+++.+.   
T Consensus        88 -----------------------------------~~~~~~~~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~  132 (588)
T 3ics_A           88 -----------------------------------ITERQKLLVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVT  132 (588)
T ss_dssp             -----------------------------------SCCGGGGBSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETT
T ss_pred             -----------------------------------CCChHHhhccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecC
Confidence                                               000111 122233333 258888 578999999999988763   


Q ss_pred             CCc--EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhh--hccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         618 AGS--EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTW--EQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       618 ~g~--~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +|+  ++.||+||||||++|..|++||.++ ...+...+...+.......  ...+++++||     |+|+|..++++..
T Consensus       133 ~g~~~~~~~d~lviAtG~~p~~p~i~G~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~  211 (588)
T 3ics_A          133 TNETYNEAYDVLILSPGAKPIVPSIPGIEE-AKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGI  211 (588)
T ss_dssp             TCCEEEEECSEEEECCCEEECCCCCTTTTT-CTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCEEEECCCCCCCCCCCCCccc-CCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            565  7899999999999999999999832 2222222222211111111  2357899999     8999999887654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.48  E-value=5.3e-14  Score=155.09  Aligned_cols=159  Identities=17%  Similarity=0.243  Sum_probs=102.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcc-eEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPM-FTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |+||||||||+||+++|..|++..++.+|+|||+++...|.+. ++...++                             
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~-----------------------------   86 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISG-----------------------------   86 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTT-----------------------------
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcC-----------------------------
Confidence            6799999999999999999998766789999999876543221 0000000                             


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccc-hhhhcc-CCcEEEe-ceEEEEEcCCCeEEcC---CC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP-MKSVLP-SGATWVK-DKIVSFDPENNRVRTQ---AG  619 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~gv~~~~-~~v~~id~~~~~V~~~---~g  619 (706)
                                                      .....+++... ...+.+ .+++++. .+|++||++.++|.+.   +|
T Consensus        87 --------------------------------~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g  134 (480)
T 3cgb_A           87 --------------------------------AIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTK  134 (480)
T ss_dssp             --------------------------------SSSCGGGGBSSCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTC
T ss_pred             --------------------------------CcCCHHHhhhcCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCC
Confidence                                            00001111111 122223 4899875 6899999988888765   36


Q ss_pred             c--EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhh--ccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         620 S--EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWE--QKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       620 ~--~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +  ++.||+||||||++|..|++||.+.  ..+..++...+........  ..+++++||     |+|+|..++++..
T Consensus       135 ~~~~~~~d~lviAtG~~p~~p~i~G~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  210 (480)
T 3cgb_A          135 DVFEFSYDRLLIATGVRPVMPEWEGRDL--QGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGK  210 (480)
T ss_dssp             CEEEEECSEEEECCCEEECCCCCBTTTS--BTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCEEEECCCCcccCCCCCCccC--CCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            6  7999999999999999999999752  2222222111111111111  167899999     8999988877653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.47  E-value=1.5e-14  Score=161.09  Aligned_cols=192  Identities=14%  Similarity=0.119  Sum_probs=108.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||||||||+||+++|.+|++.  +.+|+|||+++...          |.+..+.  .|-.. +         +..++
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~--g~~v~iiE~~~~~G----------Gtw~~~~--yPg~~-~---------d~~~~   63 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQA--GMKVLGIEAGEDVG----------GTWYWNR--YPGCR-L---------DTESY   63 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC----------THHHHCC--CTTCB-C---------SSCHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC--CCCEEEEeCCCCCC----------CccccCC--CCcee-e---------cCchh
Confidence            457999999999999999999986  78999999977542          2221111  11000 0         00000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCc--EE-EeceEEEEEcCCC----eEEcC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGA--TW-VKDKIVSFDPENN----RVRTQ  617 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv--~~-~~~~v~~id~~~~----~V~~~  617 (706)
                      ..++.+         .+...  ..+.+..   ......++...+....+ .++  ++ ++.+|+.++.+..    +|+++
T Consensus        64 ~y~~~f---------~~~~~--~~~~~~~---~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~  129 (545)
T 3uox_A           64 AYGYFA---------LKGII--PEWEWSE---NFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLD  129 (545)
T ss_dssp             HHCHHH---------HTTSS--TTCCCSB---SSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEET
T ss_pred             hccccc---------Ccccc--cCCCccc---cCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEEC
Confidence            000000         00000  0000000   00111122222222222 233  33 5678888876554    78888


Q ss_pred             CCcEEeeCEEEEecC--cccCccCCCCchhhhcccccccccccCccchh-------hhccCccEEEE-----cHHHHHHH
Q psy8791         618 AGSEISYEYMIVASG--IQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVT-------WEQKHKQYQLV-----SPEIRAKA  683 (706)
Q Consensus       618 ~g~~i~yd~lViAtG--s~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~~k~vvVi-----G~E~A~~l  683 (706)
                      +|+++.||+||+|||  +.|..|++||++.+...     .+++..+...       .+..+|+|+||     |+|+|.+|
T Consensus       130 ~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~-----~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~l  204 (545)
T 3uox_A          130 NEEVVTCRFLISATGPLSASRMPDIKGIDSFKGE-----SFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIA  204 (545)
T ss_dssp             TTEEEEEEEEEECCCSCBC---CCCTTGGGCCSE-----EEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEeCEEEECcCCCCCCcCCCCCCccccCCC-----eEEcccccccccccccccccCCCeEEEECCCccHHHHHHHH
Confidence            999999999999999  89999999998754332     1222222222       44578899999     99999999


Q ss_pred             HHHHhh--hhhhhcccccc
Q psy8791         684 YDLTKR--KMKKEAQWIRF  700 (706)
Q Consensus       684 ~~~~~~--~~~~~~~~~~~  700 (706)
                      ++.+.+  .+.+..+|+.+
T Consensus       205 a~~~~~Vtv~~r~~~~i~p  223 (545)
T 3uox_A          205 AETAKELYVFQRTPNWCTP  223 (545)
T ss_dssp             TTTBSEEEEEESSCCCCEE
T ss_pred             HhhCCEEEEEEcCCCcccc
Confidence            887654  35566666543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.46  E-value=2.9e-14  Score=158.65  Aligned_cols=101  Identities=10%  Similarity=0.079  Sum_probs=73.0

Q ss_pred             CCc--EE-EeceEEEEEcCCC----eEEcCCCcEEeeCEEEEecC--cccCccCCCCchhhhcccccccccccCccchhh
Q psy8791         595 SGA--TW-VKDKIVSFDPENN----RVRTQAGSEISYEYMIVASG--IQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTW  665 (706)
Q Consensus       595 ~gv--~~-~~~~v~~id~~~~----~V~~~~g~~i~yd~lViAtG--s~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~  665 (706)
                      .++  ++ ++.+|++++.+..    +|++.+|+++.||+||+|||  +.|..|++||++.+...     .+++..+....
T Consensus       100 ~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~-----~~~~~~~~~~~  174 (540)
T 3gwf_A          100 FDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGE-----TIHTAAWPEGK  174 (540)
T ss_dssp             TTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSE-----EEEGGGCCSSC
T ss_pred             cCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCC-----EEEeecCCCcc
Confidence            355  44 6778999987655    68888998999999999999  79999999998754332     22333333344


Q ss_pred             hccCccEEEE-----cHHHHHHHHHHHhh--hhhhhcccccc
Q psy8791         666 EQKHKQYQLV-----SPEIRAKAYDLTKR--KMKKEAQWIRF  700 (706)
Q Consensus       666 ~~~~k~vvVi-----G~E~A~~l~~~~~~--~~~~~~~~~~~  700 (706)
                      ...+|+|+||     |+|+|.+|++.+.+  .+.+..+|+-+
T Consensus       175 ~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p  216 (540)
T 3gwf_A          175 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVP  216 (540)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEE
T ss_pred             ccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCcccc
Confidence            5578999999     89999999877654  34555665543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.46  E-value=3e-13  Score=133.90  Aligned_cols=118  Identities=10%  Similarity=0.032  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHhC-CceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh------------------
Q psy8791         266 PFYAEKIHDILIGR-GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE------------------  326 (706)
Q Consensus       266 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~------------------  326 (706)
                      ..+.+.+.+.+++. |++++ +++|+++..+++.+..+.+++|+++++|.||+|+|..++..                  
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~  146 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASY  146 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECC
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccch
Confidence            45667788888887 99999 46899998665555444455788999999999999954421                  


Q ss_pred             ------hhcCCCCCCC---------Cc-------eeeC-----ccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHH
Q psy8791         327 ------LATSRLVDQS---------GY-------VNVD-----KATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVV  379 (706)
Q Consensus       327 ------~~~~~l~~~~---------G~-------i~vd-----~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~  379 (706)
                            +.+.++.-.+         |.       ..+.     ..++..|++|+|||+|||+ ...  +...+..||+.+
T Consensus       147 ~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g--~~~~~~~~g~~~  223 (232)
T 2cul_A          147 PDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG--DYARMSEEGKRL  223 (232)
T ss_dssp             SHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC--CHHHHHHHHHHH
T ss_pred             hhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc--cHHHHHHHHHHH
Confidence                  2223331000         10       1111     0123336899999999999 533  778899999999


Q ss_pred             HHHHHHHH
Q psy8791         380 YDNLSAVM  387 (706)
Q Consensus       380 a~ni~~~l  387 (706)
                      |+||.+.+
T Consensus       224 a~~i~~~l  231 (232)
T 2cul_A          224 AEHLLHEL  231 (232)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhc
Confidence            99998765

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.45  E-value=2e-13  Score=141.67  Aligned_cols=157  Identities=18%  Similarity=0.175  Sum_probs=100.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCC-cEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |+||+|||||+||+++|..|++.  +. +|+|||++..           ||.+......                     
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~v~lie~~~~-----------gg~~~~~~~~---------------------   46 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRG--GVKNAVLFEKGMP-----------GGQITGSSEI---------------------   46 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCSSEEEECSSST-----------TCGGGGCSCB---------------------
T ss_pred             CceEEEECccHHHHHHHHHHHHC--CCCcEEEEcCCCC-----------Cccccccccc---------------------
Confidence            57999999999999999999987  78 9999998421           2221110000                     


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEeceEEEEEcCCC--eEEcCCCcEE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENN--RVRTQAGSEI  622 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~~--~V~~~~g~~i  622 (706)
                                     ..      .+.++.    .....++...+.+.+ +.+++++.++|+.++.+.+  +|.+.+|+++
T Consensus        47 ---------------~~------~~~~~~----~~~~~~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~  101 (311)
T 2q0l_A           47 ---------------EN------YPGVKE----VVSGLDFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTF  101 (311)
T ss_dssp             ---------------CC------STTCCS----CBCHHHHHHHHHHHHHTTSCEEECSCEEEEEEETTEEEEEETTSCEE
T ss_pred             ---------------cc------CCCCcc----cCCHHHHHHHHHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEE
Confidence                           00      000000    001112222222222 2588988799999998776  6667888899


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      .||+||+|||+.|..|++||.+++...     ..............+++|+||     |+|+|..|+++.
T Consensus       102 ~~~~vv~AtG~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g  166 (311)
T 2q0l_A          102 EAKSVIIATGGSPKRTGIKGESEYWGK-----GVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANIC  166 (311)
T ss_dssp             EEEEEEECCCEEECCCCCBTHHHHBTT-----TEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTS
T ss_pred             ECCEEEECCCCCCCCCCCCChhhccCC-----cEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            999999999999999999997643221     111111111223356889999     889888877654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.45  E-value=2.1e-14  Score=159.75  Aligned_cols=197  Identities=12%  Similarity=0.070  Sum_probs=114.5

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccc-cc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KI  542 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~-~~  542 (706)
                      ++..+||+|||||+||+++|..|++.  +.+|+|||+++......  ....||.|. +..|.|.|.++.+...+... ..
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~--G~~V~liEk~~~~~~~~--~~~~GGtc~-~~GciPsk~l~~~~~~~~~~~~~  103 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQY--GKKVMVLDFVTPTPLGT--RWGLGGTCV-NVGCIPKKLMHQAALLGQALQDS  103 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTCC--CCCTTCHHH-HHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCcccccc--CCCcccccC-CcCccchHHHHHHHHHHHHHHHH
Confidence            34468999999999999999999998  88999999865221110  011244443 33345655444332111110 00


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS  620 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~  620 (706)
                      ..++  +..         ....    ...+..+... ....+.+...+...+. .+|+++.+++..+|+....|.+.+|+
T Consensus       104 ~~~g--~~~---------~~~~----~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~  168 (519)
T 3qfa_A          104 RNYG--WKV---------EETV----KHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK  168 (519)
T ss_dssp             HHTT--BCC---------CSSC----CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCC
T ss_pred             HhcC--ccc---------CCcC----ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCC
Confidence            0000  000         0000    0000000000 0001111112222233 69999999999999987777777774


Q ss_pred             --EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 --EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 --~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                        ++.||+||||||++|..|++||.++..         .+..........+++++||     |+|+|..|+++..+
T Consensus       169 ~~~i~~d~lViATGs~p~~p~i~G~~~~~---------~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~  235 (519)
T 3qfa_A          169 EKIYSAERFLIATGERPRYLGIPGDKEYC---------ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLD  235 (519)
T ss_dssp             CCEEEEEEEEECCCEEECCCCCTTHHHHC---------BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCEEEEECCCCcCCCCCCCccCce---------EcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence              799999999999999999999975321         1111222233467889999     89999999887543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.43  E-value=3.5e-13  Score=140.81  Aligned_cols=159  Identities=18%  Similarity=0.154  Sum_probs=100.8

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +.++||+|||||+||+++|..|++.  +.+|+|||++. .          ||.+......                    
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~-~----------gg~~~~~~~~--------------------   52 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRA--QLSTLILEKGM-P----------GGQIAWSEEV--------------------   52 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-T----------TGGGGGCSCB--------------------
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHc--CCcEEEEeCCC-C----------Cccccccccc--------------------
Confidence            4568999999999999999999997  78999999862 1          2222111000                    


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcC--C---CeEEcCC
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPE--N---NRVRTQA  618 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~--~---~~V~~~~  618 (706)
                                      ..     + +.++.   . ....++...+.+.+. .|++++.++|++++++  .   .+|.+.+
T Consensus        53 ----------------~~-----~-~~~~~---~-~~~~~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~  106 (325)
T 2q7v_A           53 ----------------EN-----F-PGFPE---P-IAGMELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGY  106 (325)
T ss_dssp             ----------------CC-----S-TTCSS---C-BCHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEES
T ss_pred             ----------------cc-----C-CCCCC---C-CCHHHHHHHHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECC
Confidence                            00     0 00000   0 001112222222222 5889988999999876  4   3677778


Q ss_pred             CcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         619 GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       619 g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      |+++.||+||+|||+.|..|++||.++....     ..............+++++||     |+|+|..|+++.
T Consensus       107 g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g  175 (325)
T 2q7v_A          107 NGEYRAKAVILATGADPRKLGIPGEDNFWGK-----GVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFA  175 (325)
T ss_dssp             SCEEEEEEEEECCCEEECCCCCTTTTTTBTT-----TEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTC
T ss_pred             CCEEEeCEEEECcCCCcCCCCCCChhhccCc-----eEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            8899999999999999999999997643211     111111111223356889999     888888876553

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.43  E-value=2.9e-14  Score=157.27  Aligned_cols=186  Identities=14%  Similarity=0.130  Sum_probs=109.8

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI  542 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~  542 (706)
                      .++.++||+|||||+||+++|..|++.  +.+|+|||++..           ||.| .+..|.|.|.++...........
T Consensus        16 ~~~~~~dVvIIGgG~aGl~aA~~la~~--G~~V~liE~~~~-----------GG~~-~~~gc~p~k~l~~~~~~~~~~~~   81 (478)
T 3dk9_A           16 GAVASYDYLVIGGGSGGLASARRAAEL--GARAAVVESHKL-----------GGTC-VNVGCVPKKVMWNTAVHSEFMHD   81 (478)
T ss_dssp             -CEEECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-----------THHH-HHHSHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC-----------CCcc-cccCccchHHHHHHHHHHHHHHH
Confidence            344578999999999999999999998  889999997531           3443 23334555554443211110000


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS  620 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~  620 (706)
                         ...+.+.        ....    ...+..+.... ...+.+...+...+. .+++++.+++..+++...+|. .+++
T Consensus        82 ---~~~~g~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~  145 (478)
T 3dk9_A           82 ---HADYGFP--------SCEG----KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGK  145 (478)
T ss_dssp             ---TTTTTSC--------CCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTE
T ss_pred             ---HHhcCcc--------CCCC----ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCE
Confidence               0000000        0000    00000000000 000111111222222 689999999999998877787 4677


Q ss_pred             EEeeCEEEEecCcccCcc---CCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 EISYEYMIVASGIQMYYD---RVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p---~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ++.||+||||||++|..|   ++||.+..          .+..........+++++||     |+|+|..|+++..
T Consensus       146 ~~~~d~lviAtG~~p~~p~~~~i~G~~~~----------~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  211 (478)
T 3dk9_A          146 KYTAPHILIATGGMPSTPHESQIPGASLG----------ITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGS  211 (478)
T ss_dssp             EEECSCEEECCCEEECCCCTTTSTTGGGS----------BCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEeeEEEEccCCCCCCCCcCCCCCCcee----------EchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCC
Confidence            899999999999999999   89997511          1111112223457899999     8999999887654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.42  E-value=1.7e-13  Score=143.85  Aligned_cols=165  Identities=15%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      +..++||+|||||+||+++|..|++.  +.+|+|||+++.....+      ||.......                  . 
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~vie~~~~~~~~~------gg~~~~~~~------------------~-   71 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARA--EIKPILYEGMMANGIAA------GGQLTTTTE------------------I-   71 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCT------TCGGGGSSE------------------E-
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCCCCCCc------Ccccccchh------------------h-
Confidence            33468999999999999999999998  88999999965222111      222110000                  0 


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEc-----C
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRT-----Q  617 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~-----~  617 (706)
                                       .     .+ +.++.    .....++...+...+. .+++++.++|+.++++.+.+.+     .
T Consensus        72 -----------------~-----~~-~~~~~----~~~~~~~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~  124 (338)
T 3itj_A           72 -----------------E-----NF-PGFPD----GLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNE  124 (338)
T ss_dssp             -----------------C-----CS-TTCTT----CEEHHHHHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCS
T ss_pred             -----------------c-----cc-CCCcc----cCCHHHHHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecC
Confidence                             0     00 00000    0011122222333333 6899988889999998876654     4


Q ss_pred             CCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhh--hccCccEEEE-----cHHHHHHHHHHH
Q psy8791         618 AGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTW--EQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       618 ~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      ++.++.||+||+|||++|..|++||.+.....     ...........  ...+++++||     |+|+|..|.++.
T Consensus       125 ~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g  196 (338)
T 3itj_A          125 DAEPVTTDAIILATGASAKRMHLPGEETYWQK-----GISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYG  196 (338)
T ss_dssp             SSCCEEEEEEEECCCEEECCCCCTTHHHHBTT-----TEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTS
T ss_pred             CCcEEEeCEEEECcCCCcCCCCCCCchhccCc-----cEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            67789999999999999999999997643221     11111111111  2357889999     788888776553

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.42  E-value=2.8e-14  Score=156.01  Aligned_cols=182  Identities=13%  Similarity=0.179  Sum_probs=104.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +++||+|||||+||+++|.+|++.  +.+|+|||+++           .||.|. +..|.|.|.++.+.........  .
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~-----------~GG~~~-~~gciP~k~l~~~a~~~~~~~~--~   66 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMY--GQKCALIEAKE-----------LGGTCV-NVGCVPKKVMWHAAQIREAIHM--Y   66 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSC-----------TTHHHH-HHSHHHHHHHHHHHHHHHHHHT--T
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCeEEEEcCCC-----------CCCccc-ccCccChHHHHHHHHHHHHHHH--H
Confidence            468999999999999999999987  88999999863           133332 2233455443332211000000  0


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      ...+.+.        .....    ..+..+... ....+.+...+...+. .+++++.++++.+|+  ++|.+ +|+++.
T Consensus        67 ~~~~g~~--------~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~-~g~~~~  131 (450)
T 1ges_A           67 GPDYGFD--------TTINK----FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV-NGETIT  131 (450)
T ss_dssp             GGGGTEE--------EEEEE----ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE-TTEEEE
T ss_pred             HHhcCcc--------CCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE-CCEEEE
Confidence            0000000        00000    000000000 0001111112222223 689999999999986  46777 777899


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|++||.+..          .+..........+++++||     |+|+|..|+++..
T Consensus       132 ~d~lviAtGs~p~~p~i~g~~~~----------~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  191 (450)
T 1ges_A          132 ADHILIATGGRPSHPDIPGVEYG----------IDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGA  191 (450)
T ss_dssp             EEEEEECCCEEECCCCSTTGGGS----------BCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eCEEEECCCCCCCCCCCCCccce----------ecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            99999999999999999997421          1111112223457899999     8999999887653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.41  E-value=6.7e-14  Score=154.23  Aligned_cols=189  Identities=11%  Similarity=0.046  Sum_probs=108.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|||+++..          ||.|. +..+.|.|.++.+...+...... .
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~~----------GG~~~-~~g~~Psk~l~~~~~~~~~~~~~-~   70 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQL--GFKTVCIEKNETL----------GGTCL-NVGCIPSKALLNNSHYYHMAHGT-D   70 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSS----------SHHHH-HHSHHHHHHHHHHHHHHHHHHSS-H
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCc----------CCccc-ccCccchHHHHHHHHHHHHhhhh-h
Confidence            468999999999999999999998  7899999997643          33332 22335555544432111100000 0


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCC-C-cE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQA-G-SE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~-g-~~  621 (706)
                      ...+.+.         ....   ...+..+.... ...+.+...+...+. .+++++.++++.+|++..+|.+.+ + ++
T Consensus        71 ~~~~g~~---------~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~  138 (474)
T 1zmd_A           71 FASRGIE---------MSEV---RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQV  138 (474)
T ss_dssp             HHHTTEE---------ESCE---EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEE
T ss_pred             HhhCccc---------cCCC---ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEE
Confidence            0000000         0000   00000000000 000011111223333 689999999989987766677766 4 57


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++|..|++||.+..  .      +.+..........+++++||     |+|+|..|+++..
T Consensus       139 ~~~d~lViAtGs~p~~p~i~g~~~~--~------v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  202 (474)
T 1zmd_A          139 IDTKNILIATGSEVTPFPGITIDED--T------IVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGA  202 (474)
T ss_dssp             EEEEEEEECCCEEECCCTTCCCCSS--S------EECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEeCEEEECCCCCCCCCCCCCCCcC--c------EEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCC
Confidence            9999999999999999999997521  1      11111112223357899999     8999998877653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.41  E-value=2.8e-14  Score=157.69  Aligned_cols=195  Identities=15%  Similarity=0.119  Sum_probs=112.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccc-ccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDK-IVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  544 (706)
                      ..+||+|||||+||+++|..+++.  +.+|+|||+++...+..  ....||.|. +..|.|.|.++.+...+.... ...
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~--G~~V~liEk~~~~~~~~--~~~~GGtc~-~~gciPsk~l~~~~~~~~~~~~~~~   79 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQL--GKKVAVADYVEPSPRGT--KWGLGGTCV-NVGCIPKKLMHQAALLGGMIRDAHH   79 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTSC--CCCTTCHHH-HHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEEecccccccc--cCCcCCeec-ccCCcccHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999998  78999999743211100  011244443 333456655444332111100 000


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--c
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--S  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~  620 (706)
                      ++  +..         ....    ...+..+.... ...+.+...+...+. .+|+++.+++..+|+....|.+.+|  .
T Consensus        80 ~g--~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~  144 (488)
T 3dgz_A           80 YG--WEV---------AQPV----QHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKAT  144 (488)
T ss_dssp             TT--CCC---------CSSC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEE
T ss_pred             cC--ccc---------CCcC----ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceE
Confidence            00  000         0000    00000000000 001111111222222 6899999999999988777777777  4


Q ss_pred             EEeeCEEEEecCcccCccC-CCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         621 EISYEYMIVASGIQMYYDR-VKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      ++.||+||||||++|..|+ +||.++..         .+..........+++++||     |+|+|..|+++..+
T Consensus       145 ~~~~d~lViATGs~p~~p~~i~G~~~~~---------~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~  210 (488)
T 3dgz_A          145 LLSAEHIVIATGGRPRYPTQVKGALEYG---------ITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLD  210 (488)
T ss_dssp             EEEEEEEEECCCEEECCCSSCBTHHHHC---------BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             EEECCEEEEcCCCCCCCCCCCCCccccc---------CcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence            7999999999999999998 99975321         1111222233467889999     89999999877543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.40  E-value=5.4e-14  Score=155.31  Aligned_cols=195  Identities=13%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCc-CCcceEEeeccccccccccccccccCCCCcccccccc-
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHY-YQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI-  542 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~-  542 (706)
                      +..+||+|||||+||+++|.+|++.  +.+|+|||+..... -..  ....||.|. +..|.|.|.++.+...+..... 
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~~~~~~--~~~~GG~c~-~~gciPsk~l~~~~~~~~~~~~~   81 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLN--GARVACLDFVKPTPTLGT--KWGVGGTCV-NVGCIPKKLMHQASLLGEAVHEA   81 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTTTC--CCCSSCHHH-HHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC--CCEEEEEEeccccccccc--cCCcCCeec-ccCchhhHHHHHHHHHHHHHHHH
Confidence            3468999999999999999999998  88999999522110 000  001244443 3344565554443311111000 


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS  620 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~  620 (706)
                      ..+  ++.+         .....    ..+..+... ....+.+...+...+. .+++++.+++..+++....|.+.+|+
T Consensus        82 ~~~--g~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~  146 (483)
T 3dgh_A           82 AAY--GWNV---------DDKIK----PDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE  146 (483)
T ss_dssp             HHT--TBCC---------CCCCC----BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCC
T ss_pred             Hhc--Cccc---------CCcCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCe
Confidence            000  0000         00000    000000000 0000111111222222 68999999999999887777777774


Q ss_pred             -EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         621 -EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       621 -~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                       ++.||+||||||++|..|++||.++..         .+..........+++++||     |+|+|..++++..
T Consensus       147 ~~~~~d~lviATGs~p~~p~i~G~~~~~---------~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  211 (483)
T 3dgh_A          147 RTITAQTFVIAVGGRPRYPDIPGAVEYG---------ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGY  211 (483)
T ss_dssp             EEEEEEEEEECCCEEECCCSSTTHHHHC---------BCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEcCEEEEeCCCCcCCCCCCCccccc---------CcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence             799999999999999999999976321         1111122233467899999     8999999987754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.40  E-value=7.9e-13  Score=137.65  Aligned_cols=156  Identities=15%  Similarity=0.067  Sum_probs=100.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++||+|||||+||+++|..|++.  +.+|+|||++  .          ||.+......                      
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~--~----------gg~~~~~~~~----------------------   58 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARY--MLKTLVIGET--P----------GGQLTEAGIV----------------------   58 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS--T----------TGGGGGCCEE----------------------
T ss_pred             ccCEEEECccHHHHHHHHHHHHC--CCcEEEEecc--C----------CCeecccccc----------------------
Confidence            57999999999999999999998  7899999985  1          2221110000                      


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCC--eEEcCCCcEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENN--RVRTQAGSEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~--~V~~~~g~~i~  623 (706)
                                          +..+.++.     ....++...+.+.+. .+++++.++|+.++++.+  .|.+.+++++.
T Consensus        59 --------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~  113 (323)
T 3f8d_A           59 --------------------DDYLGLIE-----IQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFK  113 (323)
T ss_dssp             --------------------CCSTTSTT-----EEHHHHHHHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSSCEEE
T ss_pred             --------------------cccCCCCC-----CCHHHHHHHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCCCEEE
Confidence                                00000000     011122223333332 588887799999998754  56778888999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||+|||+.|..|++||.+.+...     ..............+++++||     |+|+|..|.+...
T Consensus       114 ~d~lvlAtG~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~  178 (323)
T 3f8d_A          114 ADSVILGIGVKRRKLGVPGEQEFAGR-----GISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYST  178 (323)
T ss_dssp             EEEEEECCCCEECCCCCTTTTTTBTT-----TEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSS
T ss_pred             cCEEEECcCCCCccCCCCchhhhcCC-----ceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCC
Confidence            99999999999999999998743221     111111112233457889999     8899888877643

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.40  E-value=7e-13  Score=140.12  Aligned_cols=172  Identities=12%  Similarity=0.083  Sum_probs=102.5

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      |+++||+|||||++|+++|..|+++  +.+|+|||+++...          |.+..   +.|...+..            
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g----------g~~~~---~~~~~~~~~------------   53 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRS--GLSYVILDAEASPG----------GAWQH---AWHSLHLFS------------   53 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHS--SCCEEEECCSSSSS----------GGGGG---SCTTCBCSS------------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCC----------CcccC---CCCCcEecC------------
Confidence            3578999999999999999999998  78999999976532          21110   011100000            


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccc--ccccccccccccchhhhcc-CCcEEE-eceEEEEEcCCCe---EEcC
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLI--GGGMKKLSDSRRPMKSVLP-SGATWV-KDKIVSFDPENNR---VRTQ  617 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~gv~~~-~~~v~~id~~~~~---V~~~  617 (706)
                                       +...+ ..+.++..  .......+++...+.+..+ .++++. +.+|+.++++.+.   |.+.
T Consensus        54 -----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~  115 (357)
T 4a9w_A           54 -----------------PAGWS-SIPGWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARD  115 (357)
T ss_dssp             -----------------CGGGS-CCSSSCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETT
T ss_pred             -----------------chhhh-hCCCCCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeC
Confidence                             00000 00000000  0000111222222333333 588884 4689999987776   6677


Q ss_pred             CCcEEeeCEEEEecC--cccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         618 AGSEISYEYMIVASG--IQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       618 ~g~~i~yd~lViAtG--s~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      +| ++.||+||+|||  +.|..|++||.++.....     .............+++|+||     |+|+|..|.+.+
T Consensus       116 ~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~  186 (357)
T 4a9w_A          116 GR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQ-----LHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA  186 (357)
T ss_dssp             SC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEE-----EEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS
T ss_pred             CC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcE-----EEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC
Confidence            77 899999999999  577778999976432221     11111111223357889999     899999987765

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.40  E-value=5.9e-14  Score=154.72  Aligned_cols=190  Identities=16%  Similarity=0.123  Sum_probs=106.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|.+|++.  +.+|+|||+++           .||.|. +..|.|.|.++.+...+.....   
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~--g~~V~liE~~~-----------~GG~~~-n~gciP~k~l~~~~~~~~~~~~---   72 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY--GAKTLLVEAKA-----------LGGTCV-NVGCVPKKVMWYASDLATRVSH---   72 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--SCCEEEEESSC-----------TTHHHH-HHSHHHHHHHHHHHHHHHHHTT---
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC--CCcEEEEeCCC-----------cCCcCc-ccCcHHHHHHHHHHHHHHHHHh---
Confidence            468999999999999999999997  89999999863           133332 2233454443322111000000   


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc--E
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS--E  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~--~  621 (706)
                      ...+.+.      ...+.........+..+.... ...+.+...+...+. .+++++.++++.+|+....|.+.+|+  +
T Consensus        73 ~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~  146 (479)
T 2hqm_A           73 ANEYGLY------QNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEV  146 (479)
T ss_dssp             TTTTTBS------TTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEE
T ss_pred             HHhcCcc------cccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEE
Confidence            0000000      000000000000000000000 000111112222232 68999999999988776667767776  8


Q ss_pred             EeeCEEEEecCcccCcc-CCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYD-RVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p-~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++|..| ++||.+..          .+..........+++++||     |+|+|..|+++..
T Consensus       147 ~~~d~lviAtGs~p~~p~~i~g~~~~----------~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~  209 (479)
T 2hqm_A          147 YSANHILVATGGKAIFPENIPGFELG----------TDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGS  209 (479)
T ss_dssp             EEEEEEEECCCEEECCCTTSTTGGGS----------BCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             EEeCEEEEcCCCCCCCCCCCCCcccc----------cchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            99999999999999999 89997421          1111112223467899999     8999999887653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.39  E-value=5.8e-13  Score=138.06  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=98.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      +||+|||||+||+++|..|++.  +.+|+|||+..            ||.+..... .                      
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~--g~~v~li~~~~------------gG~~~~~~~-~----------------------   44 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARK--GIRTGLMGERF------------GGQILDTVD-I----------------------   44 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT--TCCEEEECSST------------TGGGGGCCE-E----------------------
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC------------Cceeccccc-c----------------------
Confidence            6899999999999999999987  78999997531            222110000 0                      


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEec-eEEEEEcC-----CCeEEcCCCc
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKD-KIVSFDPE-----NNRVRTQAGS  620 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~-~v~~id~~-----~~~V~~~~g~  620 (706)
                                   ..           +.........++...+.+.+. .+++++.+ +|++++++     ...|.+++|+
T Consensus        45 -------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~  100 (310)
T 1fl2_A           45 -------------EN-----------YISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGA  100 (310)
T ss_dssp             -------------CC-----------BTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSC
T ss_pred             -------------cc-----------ccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCC
Confidence                         00           000000011122223333333 58999877 89999875     3467788888


Q ss_pred             EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      ++.||+||+|||++|..|++||.+++...     ..............+++|+||     |+|+|..|++..
T Consensus       101 ~~~~~~lv~AtG~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g  167 (310)
T 1fl2_A          101 VLKARSIIVATGAKWRNMNVPGEDQYRTK-----GVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIV  167 (310)
T ss_dssp             EEEEEEEEECCCEEECCCCCTTTTTTBTT-----TEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTB
T ss_pred             EEEeCEEEECcCCCcCCCCCCChhhcccc-----eeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            99999999999999999999997643211     111111111223457899999     889998887654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.39  E-value=4.7e-14  Score=156.16  Aligned_cols=190  Identities=13%  Similarity=0.148  Sum_probs=110.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|||+++..          ||.|. +..+.|.+.++.....+......  
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~----------GG~~~-~~gciP~k~l~~~~~~~~~~~~~--   88 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQL--GMKVAVVEKRSTY----------GGTCL-NVGCIPSKALLHASEMFHQAQHG--   88 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS----------SHHHH-HHSHHHHHHHHHHHHHHHHHHHS--
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCC----------CCccc-cccchhhHHHHHHHHHHHHHHhh--
Confidence            357999999999999999999998  8899999986543          34332 23344555544433222111000  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--cE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~~  621 (706)
                      ...+.+.        ......    .+..+... ....+.+...+...+. .+++++.+++..+++....|.+.+|  ++
T Consensus        89 ~~~~g~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~  156 (491)
T 3urh_A           89 LEALGVE--------VANPKL----NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQV  156 (491)
T ss_dssp             SGGGTEE--------CCCCEE----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEE
T ss_pred             HhhcCcc--------cCCCcc----CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEE
Confidence            0000000        000000    00000000 0001111112222233 6899999999999887777777777  57


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++|  +++||+++....    ....+..........+++++||     |+|+|..|+++..
T Consensus       157 ~~~d~lViATGs~p--~~ipg~~~~~~~----~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  222 (491)
T 3urh_A          157 LEAKNVVIATGSDV--AGIPGVEVAFDE----KTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGA  222 (491)
T ss_dssp             EECSEEEECCCEEC--CCBTTBCCCCCS----SSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             EEeCEEEEccCCCC--CCCCCcccccCC----eeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            99999999999986  478887532222    1222333333344568899999     8999999987754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.39  E-value=9.4e-14  Score=152.32  Aligned_cols=180  Identities=17%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccc-cccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~-~~~~  544 (706)
                      +++||+|||||+||+++|.+|++.  +.+|+|||+++           .||.|. +..|.|.|.++.+...+... ....
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~-----------~GG~~~-~~gciP~k~l~~~a~~~~~~~~~~~   68 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF--GKRVALIESKA-----------LGGTCV-NVGCVPKKVMWYASHLAEAVRDAPG   68 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-----------TTHHHH-HHSHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC--CCcEEEEcCCC-----------CCCcCc-CcCchhHHHHHHHHHHHHHHhhhhh
Confidence            468999999999999999999987  88999999863           133332 22234544433222110000 0000


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEI  622 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i  622 (706)
                      +  ++..          ...    ...+..+.... ...+.+...+...+. .+++++.++++.+|+  ++|.+ +|+++
T Consensus        69 ~--g~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~-~g~~~  129 (463)
T 2r9z_A           69 F--GVQA----------SGG----TLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV-EGQRL  129 (463)
T ss_dssp             G--TBCC----------C-------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE-TTEEE
T ss_pred             c--Cccc----------CCC----CcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE-CCEEE
Confidence            0  0000          000    00000000000 001111112222222 689999999988875  47777 67789


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|..|++||.+..          .+..........+++++||     |+|+|..|+++..
T Consensus       130 ~~d~lviAtGs~p~~p~i~G~~~~----------~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~  190 (463)
T 2r9z_A          130 SADHIVIATGGRPIVPRLPGAELG----------ITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGS  190 (463)
T ss_dssp             EEEEEEECCCEEECCCSCTTGGGS----------BCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EcCEEEECCCCCCCCCCCCCccce----------ecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            999999999999999999997411          1111112223357899999     8999998887653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.38  E-value=4.1e-14  Score=155.65  Aligned_cols=188  Identities=14%  Similarity=0.079  Sum_probs=109.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++||+|||||+||+++|.+|++.  +.+|+|||+++..          ||.|. +..+.|.|.++.....+.....  ..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~~----------GG~~~-~~g~~psk~l~~~~~~~~~~~~--~~   66 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL--GMKTACVEKRGAL----------GGTCL-NVGCIPSKALLHATHLYHDAHA--NF   66 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS----------SHHHH-HHSHHHHHHHHHHHHHHHHHHH--TH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCc----------CCcCC-CcCcHhHHHHHHHHHHHHHHHH--HH
Confidence            47999999999999999999998  7899999997643          33332 2234565554433211111000  00


Q ss_pred             CCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--cEE
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SEI  622 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~~i  622 (706)
                      ..+.+.       ......    ..+..+.... ...+.+...+...++ .+++++.++++.+|++..+|.+.+|  +++
T Consensus        67 ~~~g~~-------~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~  135 (468)
T 2qae_A           67 ARYGLM-------GGEGVT----MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEML  135 (468)
T ss_dssp             HHHTEE-------CGGGCE----ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             HhcCcc-------cCCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEE
Confidence            000000       000000    0000000000 000011112222333 5899999988889887667777777  789


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|..|+++|.+.  ..      ..+..+.......+++++||     |+|+|..++++..
T Consensus       136 ~~d~lviAtG~~p~~p~~~g~~~--~~------v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  198 (468)
T 2qae_A          136 ETKKTIIATGSEPTELPFLPFDE--KV------VLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGA  198 (468)
T ss_dssp             EEEEEEECCCEEECCBTTBCCCS--SS------EECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EcCEEEECCCCCcCCCCCCCCCc--Cc------eechHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCC
Confidence            99999999999999999998652  11      11211222223367899999     8999999887653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.38  E-value=1.1e-13  Score=153.32  Aligned_cols=189  Identities=15%  Similarity=0.141  Sum_probs=108.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcC-CCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLG-KGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~-~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ++||||||||+||+++|.+|++..| +.+|+|||+++ .          ||.|. +..+.|.|.++.....+.....   
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~----------GG~~~-~~g~~psk~l~~~a~~~~~~~~---   66 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-I----------GGAAV-LDDCVPSKTFIASTGLRTELRR---   66 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-T----------THHHH-HTSHHHHHHHHHHHHHHHHHTT---
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-c----------CCccc-CcCccchHHHHHHHHHHHHHHH---
Confidence            3799999999999999999999866 78999999865 2          33332 2233565554443221111000   


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEc------CCCeEEcC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDP------ENNRVRTQ  617 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~------~~~~V~~~  617 (706)
                      ...+.+.     ......     ...+..+.... ...+.+...+...++ .|++++.++++++|+      ....|.+.
T Consensus        67 ~~~~g~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~  136 (499)
T 1xdi_A           67 APHLGFH-----IDFDDA-----KISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAA  136 (499)
T ss_dssp             TTTTTBC----------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECT
T ss_pred             HHhCCCc-----cccCCC-----ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeC
Confidence            0000000     000000     00000000000 000011112233333 689999999999988      33345666


Q ss_pred             CCc--EEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         618 AGS--EISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       618 ~g~--~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +|+  ++.||+||||||++|..|++||.+..  .      +.+..........+++++||     |+|+|..+.++..
T Consensus       137 ~g~~~~~~~d~lviATGs~p~~p~i~g~~~~--~------v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~  206 (499)
T 1xdi_A          137 DGSTSEHEADVVLVATGASPRILPSAQPDGE--R------ILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGV  206 (499)
T ss_dssp             TSCEEEEEESEEEECCCEEECCCGGGCCCSS--S------EEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEEeCEEEEcCCCCCCCCCCCCCCcC--c------EEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            776  79999999999999999999997521  1      11222222333457899999     8999998887653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.36  E-value=2.3e-13  Score=150.39  Aligned_cols=191  Identities=13%  Similarity=0.140  Sum_probs=104.5

Q ss_pred             ccccccccCcchhHHHHHHHHHh-hcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTS-RLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~-~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      .++||+|||||+||+++|.+|++ .  +.+|+|||+.... -.+.-.. .||.|.. ..|.|.|.++.+...+.....  
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~--G~~V~liE~~~~~-~~~~~~~-~GG~~~~-~gciP~k~l~~~a~~~~~~~~--   78 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLY--GKRVAVVDVQTSH-GPPFYAA-LGGTCVN-VGCVPKKLMVTGAQYMDHLRE--   78 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEESCSSS-BTTTBCB-TTHHHHH-HSHHHHHHHHHHHHHHHHHHH--
T ss_pred             cccCEEEECCChhHHHHHHHHHHhc--CCeEEEEeccccc-ccccCCC-CCCeeec-CCcchHHHHHHHHHHHHHHhH--
Confidence            46899999999999999999999 7  8899999931100 0000001 2444332 223465544332211100000  


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-C-CcEEEeceEEEEEcCCCeEEcC---C
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-S-GATWVKDKIVSFDPENNRVRTQ---A  618 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-gv~~~~~~v~~id~~~~~V~~~---~  618 (706)
                       ...+.+.        .... . ....+..+.... ...+.+...+...+. . +|+++.++++.+|+  ++|.+.   +
T Consensus        79 -~~~~g~~--------~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~  145 (495)
T 2wpf_A           79 -SAGFGWE--------FDGS-S-VKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESK--NVVVVRETAD  145 (495)
T ss_dssp             -HHTTTEE--------CCGG-G-CEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEET--TEEEEESSSS
T ss_pred             -HHhcCcc--------cCCc-c-cccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeC--CEEEEeecCC
Confidence             0000000        0000 0 000000000000 001111122223333 5 89999999999985  467665   4


Q ss_pred             -----CcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         619 -----GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       619 -----g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                           ++++.||+||||||++|..|++||.+...          +..........+++++||     |+|+|..|+++
T Consensus       146 ~~~~~~~~~~~d~lViATGs~p~~p~i~G~~~~~----------~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~  213 (495)
T 2wpf_A          146 PKSAVKERLQADHILLATGSWPQMPAIPGIEHCI----------SSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAY  213 (495)
T ss_dssp             TTSCEEEEEEEEEEEECCCEEECCCCCTTGGGCE----------EHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEcCEEEEeCCCCcCCCCCCCccccc----------cHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhh
Confidence                 67899999999999999999999974211          111111223357899999     89999999877

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.36  E-value=1.5e-12  Score=135.10  Aligned_cols=158  Identities=18%  Similarity=0.139  Sum_probs=97.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEE-ECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSI-VEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~v-id~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      ..|+||+|||||+||+++|..|++.  +.+|+| +|++. .          ||.+......                   
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~li~e~~~-~----------gG~~~~~~~~-------------------   49 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKGM-P----------GGQITSSSEI-------------------   49 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSS-T----------TGGGGGCSCB-------------------
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCC-C----------Cceeeeecee-------------------
Confidence            3578999999999999999999998  789999 99832 1          2221111000                   


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCC--CeEE--cCC
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPEN--NRVR--TQA  618 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~--~~V~--~~~  618 (706)
                                       .      ..|.++    ......++...+...+. .+++++.++|+.+ ++.  +.+.  +.+
T Consensus        50 -----------------~------~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i-~~~~~~~~~v~~~~  101 (315)
T 3r9u_A           50 -----------------E------NYPGVA----QVMDGISFMAPWSEQCMRFGLKHEMVGVEQI-LKNSDGSFTIKLEG  101 (315)
T ss_dssp             -----------------C------CSTTCC----SCBCHHHHHHHHHHHHTTTCCEEECCCEEEE-EECTTSCEEEEETT
T ss_pred             -----------------c------cCCCCC----CCCCHHHHHHHHHHHHHHcCcEEEEEEEEEE-ecCCCCcEEEEEec
Confidence                             0      000000    00011222233333333 5899988899999 444  3333  433


Q ss_pred             CcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         619 GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       619 g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      +.++.||+||+|||+.|..|++||.+.....     ..............+++++||     |+|+|..|.+..
T Consensus       102 ~~~~~~d~lvlAtG~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g  170 (315)
T 3r9u_A          102 GKTELAKAVIVCTGSAPKKAGFKGEDEFFGK-----GVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANIC  170 (315)
T ss_dssp             SCEEEEEEEEECCCEEECCCCCBTTTTTBTT-----TEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTS
T ss_pred             CCEEEeCEEEEeeCCCCCCCCCCChhhcCCC-----eEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhC
Confidence            3399999999999999999999998743221     122222222333467889999     788888876653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.36  E-value=6.3e-13  Score=138.43  Aligned_cols=159  Identities=16%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      |.++||+|||||+||+++|..|++.  +.+|+|||+...           ||.+......                    
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~-----------gg~~~~~~~~--------------------   49 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEK-----------GGQLTTTTEV--------------------   49 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTT--TCCCEEECCSST-----------TGGGGGCSBC--------------------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEccCCC-----------CceEecchhh--------------------
Confidence            4568999999999999999999987  789999996321           2211100000                    


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEeceEEEEEcCCCeEE-cCCCcEE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENNRVR-TQAGSEI  622 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~~~V~-~~~g~~i  622 (706)
                                      .      ..+.++.   . ....++...+.... +.+++++.++|+.++++.+.+. +.+++++
T Consensus        50 ----------------~------~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~~~~  103 (320)
T 1trb_A           50 ----------------E------NWPGDPN---D-LTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEY  103 (320)
T ss_dssp             ----------------C------CSTTCCS---S-CBHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEE
T ss_pred             ----------------h------hCCCCCC---C-CCHHHHHHHHHHHHHHCCCEEEEeeeeEEEecCCEEEEEeCCCEE
Confidence                            0      0000000   0 00111122222222 2589998889999998776554 5677899


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      .||+||+|||++|..|++||.+.....     ..............+++|+||     |+|+|..|+++.
T Consensus       104 ~~~~lv~AtG~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g  168 (320)
T 1trb_A          104 TCDALIIATGASARYLGLPSEEAFKGR-----GVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIA  168 (320)
T ss_dssp             EEEEEEECCCEEECCCCCHHHHHTBTT-----TEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTS
T ss_pred             EcCEEEECCCCCcCCCCCCChHHhCCc-----eeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcC
Confidence            999999999999998889887542111     111111112223467889999     888888876553

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.35  E-value=1.3e-13  Score=151.10  Aligned_cols=184  Identities=15%  Similarity=0.147  Sum_probs=107.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++||+|||||+||+++|.+|++.  +.+|+|||++. .          ||.|. +..+.|.|.++.....+.....   .
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~-~----------gG~~~-~~g~~p~k~l~~~~~~~~~~~~---~   65 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKGN-L----------GGVCL-NVGCIPSKALISASHRYEQAKH---S   65 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-T----------THHHH-HTSHHHHHHHHHHHHHHHHHHT---C
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCC-C----------CCcCc-CcCchhhHHHHHHHHHHHHHHH---H
Confidence            57999999999999999999998  78999999862 1          33332 2234555554433221111000   0


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC-cEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG-SEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g-~~i~  623 (706)
                      ..+.+.        -....    ..+..+... ....+.+...+...+. .+++++.+++..+|++...|.+.+| +++.
T Consensus        66 ~~~g~~--------~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~  133 (455)
T 1ebd_A           66 EEMGIK--------AENVT----IDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYT  133 (455)
T ss_dssp             GGGTEE--------CCSCE----ECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEE
T ss_pred             HhcCcc--------cCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEE
Confidence            000000        00000    000000000 0000111112223333 6899999998888876666777777 6899


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|+++|.+..         ..+..........+++++||     |+|+|..|+++..
T Consensus       134 ~d~lViATGs~p~~~~~~g~~~~---------v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  194 (455)
T 1ebd_A          134 FKNAIIATGSRPIELPNFKFSNR---------ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGT  194 (455)
T ss_dssp             CSEEEECCCEEECCBTTBCCCSS---------EECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eCEEEEecCCCCCCCCCCCccce---------EecHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            99999999999999999886521         11111122223357899999     8999999887654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.35  E-value=9.7e-14  Score=152.82  Aligned_cols=188  Identities=16%  Similarity=0.146  Sum_probs=108.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|||+++..          ||.|. +..+.|.|.++.....+.....  .
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~--g~~V~liE~~~~~----------GG~~~-~~g~~p~k~l~~~~~~~~~~~~--~   69 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGAL----------GGTCL-NVGCIPSKALLHSSHMYHEAKH--S   69 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSS----------CCSHH-HHSHHHHHHHHHHHHHHHHHHH--T
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCc----------ccccc-CcCccchHHHHHHHHHHHHHHH--H
Confidence            468999999999999999999998  7899999997643          33332 2223455544333211111000  0


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--cE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~~  621 (706)
                      ...+.+.        .....    ..+..+.... ...+.+...+...+. .+++++.++++.+|++..+|.+.+|  ++
T Consensus        70 ~~~~g~~--------~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~  137 (470)
T 1dxl_A           70 FANHGVK--------VSNVE----IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTV  137 (470)
T ss_dssp             HHHHTEE--------ESCEE----ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEE
T ss_pred             HHhcCcc--------cCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEE
Confidence            0000000        00000    0000000000 000111111222222 5899999888888876556666677  68


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||+|||++|..|+++|.+.  ..      ..+..........+++++||     |+|+|..|+++..
T Consensus       138 i~~d~lIiAtGs~p~~p~~~g~~~--~~------v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  201 (470)
T 1dxl_A          138 VKGKHIIIATGSDVKSLPGVTIDE--KK------IVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGS  201 (470)
T ss_dssp             EECSEEEECCCEEECCBTTBCCCS--SS------EECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTC
T ss_pred             EEcCEEEECCCCCCCCCCCCCCCc--cc------EEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            999999999999999999998652  11      11111222223357899999     8999999887653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.35  E-value=1.6e-12  Score=136.41  Aligned_cols=159  Identities=20%  Similarity=0.178  Sum_probs=99.3

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +.++||+|||||+||+++|..|++.  +.+|+|||++..           ||.+.....                     
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~-----------gg~~~~~~~---------------------   57 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARA--QLAPLVFEGTSF-----------GGALMTTTD---------------------   57 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHT--TCCCEEECCSSC-----------SCGGGSCSC---------------------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC-----------CCceeccch---------------------
Confidence            3468999999999999999999987  789999996421           222110000                     


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEeceEEEEEcCC-CeE-EcCCCcE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPEN-NRV-RTQAGSE  621 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~-~~V-~~~~g~~  621 (706)
                                     +..      .+.++.   . ....++...+.+.. +.+++++.++|+.++..+ .+| .+.+|++
T Consensus        58 ---------------~~~------~~~~~~---~-~~~~~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~  112 (335)
T 2a87_A           58 ---------------VEN------YPGFRN---G-ITGPELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQT  112 (335)
T ss_dssp             ---------------BCC------STTCTT---C-BCHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTSCE
T ss_pred             ---------------hhh------cCCCCC---C-CCHHHHHHHHHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCE
Confidence                           000      000000   0 00111222222222 258999888899999732 357 7778889


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      +.||+||+|||+.|..|++||.+.+...     ..............+++|+||     |+|+|..|+++.
T Consensus       113 ~~~d~lviAtG~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g  178 (335)
T 2a87_A          113 HRARAVILAMGAAARYLQVPGEQELLGR-----GVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFA  178 (335)
T ss_dssp             EEEEEEEECCCEEECCCCCTHHHHTBTT-----TEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTC
T ss_pred             EEeCEEEECCCCCccCCCCCchHhccCC-----ceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            9999999999999999999987643211     111111112222457899999     888888876553

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.34  E-value=3.2e-13  Score=148.20  Aligned_cols=179  Identities=19%  Similarity=0.237  Sum_probs=102.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +++||+|||||+||+++|.+|++.  +.+|+|||+++.           ||.|. +..+.|.|.++.+...+......  
T Consensus         5 ~~~dvvIIG~G~aG~~aA~~l~~~--g~~V~lie~~~~-----------GG~~~-~~g~iP~k~l~~~~~~~~~~~~~--   68 (464)
T 2eq6_A            5 KTYDLIVIGTGPGGYHAAIRAAQL--GLKVLAVEAGEV-----------GGVCL-NVGCIPTKALLHAAETLHHLKVA--   68 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-----------THHHH-HTSHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCC-----------CCCCC-CcChHHHHHHHHHHHHHHHHHhH--
Confidence            358999999999999999999987  789999998651           33332 22334555444332111110000  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                       ..+.+         .....    ..+..+... ....+.+...+...++ .|++++.++++.+|+  ++|.+. |++++
T Consensus        69 -~~~g~---------~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~-g~~~~  131 (464)
T 2eq6_A           69 -EGFGL---------KAKPE----LDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGP--KEVEVG-GERYG  131 (464)
T ss_dssp             -GGGTE---------ECCCE----ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET-TEEEE
T ss_pred             -HhcCC---------CCCCC----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccC--CEEEEc-cEEEE
Confidence             00000         00000    000000000 0000111111222333 689999999888875  477776 67899


Q ss_pred             eCEEEEecCcccCccC-CCCchhhhcccccccccccCccchhhhc-cCccEEEE-----cHHHHHHHHHHH
Q psy8791         624 YEYMIVASGIQMYYDR-VKGGTTSLEDRGKMRGVSDGFSTVTWEQ-KHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       624 yd~lViAtGs~~~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      ||+||||||++|..|+ +||..    .      +.+......... .+++++||     |+|+|..|+++.
T Consensus       132 ~d~lViATGs~p~~p~gi~~~~----~------v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g  192 (464)
T 2eq6_A          132 AKSLILATGSEPLELKGFPFGE----D------VWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLG  192 (464)
T ss_dssp             EEEEEECCCEEECCBTTBCCSS----S------EECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             eCEEEEcCCCCCCCCCCCCCCC----c------EEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCC
Confidence            9999999999999886 66621    1      111111122222 57899999     899998887764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.34  E-value=3.5e-13  Score=147.66  Aligned_cols=184  Identities=14%  Similarity=0.087  Sum_probs=103.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|.++++.  +.+|+|||++. .          ||.|. +..+.|.|.++.+...+........
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~-~----------GG~~~-~~g~~Psk~l~~~~~~~~~~~~~~~   69 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQA-L----------GGTCL-NIGCIPSKALIHVAEQFHQASRFTE   69 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSC-T----------THHHH-HHSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEccCC-C----------CCcCC-CcCcHhHHHHHHHHHHHHHHhhccc
Confidence            468999999999999999999998  78999999832 1          34443 2334566555443321111000000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      ...+.+.        ....    ...+..+... ....+.+...+..+++ .|++++.+++..++.  ++|.+++ +++.
T Consensus        70 ~~~~g~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~~-~~~~  134 (458)
T 1lvl_A           70 PSPLGIS--------VASP----RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG--KQVEVDG-QRIQ  134 (458)
T ss_dssp             CCTTCCC--------CCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEET--TEEEETT-EEEE
T ss_pred             ccccCcc--------cCCC----ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccC--CEEEEee-EEEE
Confidence            0000000        0000    0000000000 0000111111223333 689999999888874  5787766 7899


Q ss_pred             eCEEEEecCcccCccC-CCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDR-VKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|+ +|. +.   .      ..+..+.......+++++||     |+|+|..|+++..
T Consensus       135 ~d~lviATGs~p~~~~~~~~-~~---~------v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~  195 (458)
T 1lvl_A          135 CEHLLLATGSSSVELPMLPL-GG---P------VISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGA  195 (458)
T ss_dssp             CSEEEECCCEEECCBTTBCC-BT---T------EECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             eCEEEEeCCCCCCCCCCCCc-cC---c------EecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCC
Confidence            9999999999998775 552 21   1      11111112222357899999     9999999887754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.34  E-value=1.6e-10  Score=127.73  Aligned_cols=75  Identities=13%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             CCceEEeecEEEECCCCCch--hhhhc-C-CC-CCCCCceeeCccccccC-------CCCCEEEccccCC---CCCCchH
Q psy8791         305 DKTERLPYAIMHVTPPMGPV--PELAT-S-RL-VDQSGYVNVDKATLQHV-------KYSNVFAIGDCSN---LPTSKTA  369 (706)
Q Consensus       305 ~~g~~i~~D~vI~a~G~~~~--~~~~~-~-~l-~~~~G~i~vd~~~l~~~-------~~~~Ifa~GD~~~---~~~~~~~  369 (706)
                      ++|+++++|.||+|||++++  .++.. . .+ .+.+|...|+. .+++.       ..++||+.|=+-.   ...|.+.
T Consensus       391 ~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~r-dy~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls  469 (501)
T 4b63_A          391 DVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHR-DYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLS  469 (501)
T ss_dssp             -CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCT-TSBBCCCTTTBCTTCEEEECSCCHHHHCTTTTSST
T ss_pred             CCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCC-CcEEeecCCccCCCceEEecCCCcccCCcchhhHH
Confidence            47889999999999999987  34433 2 23 56778888876 34432       2467999984321   2234344


Q ss_pred             HHHHHhHHHHH
Q psy8791         370 AAVAGQCKVVY  380 (706)
Q Consensus       370 ~~a~~qg~~~a  380 (706)
                      ..|.+.++++.
T Consensus       470 ~~a~R~~~I~~  480 (501)
T 4b63_A          470 VLAVRGGEMVQ  480 (501)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            45677665443

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.34  E-value=2e-12  Score=134.57  Aligned_cols=156  Identities=19%  Similarity=0.167  Sum_probs=96.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..+||+|||||+||+++|..|++.  +.+|+|||++..           ||.+......                     
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~-----------gg~~~~~~~~---------------------   60 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARS--GFSVAILDKAVA-----------GGLTAEAPLV---------------------   60 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSST-----------TGGGGGCSCB---------------------
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCC-----------Cccccccchh---------------------
Confidence            357999999999999999999998  789999998421           2221110000                     


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEeceEEEEEcCCC--eEEcCCCcEE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENN--RVRTQAGSEI  622 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~~--~V~~~~g~~i  622 (706)
                                     ..     + +.+.     .....++...+.+.. +.+++++.++|+.++.+.+  +|.+ +++++
T Consensus        61 ---------------~~-----~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~  113 (319)
T 3cty_A           61 ---------------EN-----Y-LGFK-----SIVGSELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIET-NDDTY  113 (319)
T ss_dssp             ---------------CC-----B-TTBS-----SBCHHHHHHHHHHHHHTTSEEEETCCEEEEEEETTEEEEEE-SSSEE
T ss_pred             ---------------hh-----c-CCCc-----ccCHHHHHHHHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEE-CCCEE
Confidence                           00     0 0000     000011112222222 2588988889999997666  4555 56789


Q ss_pred             eeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         623 SYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       623 ~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      .||+||+|||+.|..|++||.+.....     ..............+++++||     |+|+|..|+++.
T Consensus       114 ~~~~li~AtG~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g  178 (319)
T 3cty_A          114 HAKYVIITTGTTHKHLGVKGESEYFGK-----GTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYV  178 (319)
T ss_dssp             EEEEEEECCCEEECCCCCBTTTTTBTT-----TEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTB
T ss_pred             EeCEEEECCCCCcccCCCCChHHhCCc-----eEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhC
Confidence            999999999999999999987542211     111111111223356889999     788888876553

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.34  E-value=1.5e-12  Score=136.11  Aligned_cols=158  Identities=13%  Similarity=0.134  Sum_probs=100.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|||+++...          |....   ..|...+               
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~g----------G~~~~---~~~~~~~---------------   55 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMR--QASVKIIESLPQLG----------GQLSA---LYPEKYI---------------   55 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC----------HHHHH---HCTTSEE---------------
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCCC----------ceehh---cCCCceE---------------
Confidence            468999999999999999999997  78999999977532          21100   0000000               


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEE-eceEEEEEcCCC---eEEcCCCc
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWV-KDKIVSFDPENN---RVRTQAGS  620 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~-~~~v~~id~~~~---~V~~~~g~  620 (706)
                                           ...+.++     ....+++...+.+.+. .+++++ +.+|+.++++.+   .|.+.+|+
T Consensus        56 ---------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~  109 (332)
T 3lzw_A           56 ---------------------YDVAGFP-----KIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET  109 (332)
T ss_dssp             ---------------------CCSTTCS-----SEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE
T ss_pred             ---------------------eccCCCC-----CCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE
Confidence                                 0000000     0011222233333333 578885 689999999876   67888875


Q ss_pred             EEeeCEEEEecCc---ccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         621 EISYEYMIVASGI---QMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       621 ~i~yd~lViAtGs---~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                       +.||+||+|||+   .|..|++||.+.+...     .....+ .......+++++||     |+|+|..|.+.
T Consensus       110 -~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~-----~~~~~~-~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~  176 (332)
T 3lzw_A          110 -HYSKTVIITAGNGAFKPRKLELENAEQYEGK-----NLHYFV-DDLQKFAGRRVAILGGGDSAVDWALMLEPI  176 (332)
T ss_dssp             -EEEEEEEECCTTSCCEECCCCCTTGGGGBTT-----TEESSC-SCGGGGBTCEEEEECSSHHHHHHHHHHTTT
T ss_pred             -EEeCEEEECCCCCcCCCCCCCCCChhhccCc-----eEEEec-CCHHHcCCCEEEEECCCHhHHHHHHHHHhh
Confidence             999999999999   8999999998753221     111111 11122357889999     78888777654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.33  E-value=5.9e-13  Score=146.98  Aligned_cols=191  Identities=16%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             ccccccccCcchhHHHHHHHHHh-hcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTS-RLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~-~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      .++||+|||||+||+++|.+|++ .  +.+|+|||+.... -.+.-.. .||.|. +..|.|.|.++.++........  
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~--G~~V~liE~~~~~-~~~~~~~-~GG~c~-~~gciPsk~l~~~a~~~~~~~~--   74 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH--KKRVAVIDLQKHH-GPPHYAA-LGGTCV-NVGCVPKKLMVTGANYMDTIRE--   74 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEESCSSS-BTTTBSC-TTCHHH-HHSHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc--CCEEEEEeccccc-ccccCCC-cCcccc-CCCcchhhHHHHHHHHHHHHHH--
Confidence            36899999999999999999999 7  8899999931100 0000000 144433 2233465544433211100000  


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-C-CcEEEeceEEEEEcCCCeEEc-----
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-S-GATWVKDKIVSFDPENNRVRT-----  616 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-gv~~~~~~v~~id~~~~~V~~-----  616 (706)
                       ...+.+.        .... . ....+..+... ....+.+...+...+. . +|+++.++++.+|+.  +|.+     
T Consensus        75 -~~~~g~~--------~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~--~v~v~~~~~  141 (490)
T 1fec_A           75 -SAGFGWE--------LDRE-S-VRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNH--TVLVRESAD  141 (490)
T ss_dssp             -GGGGTEE--------CCGG-G-CEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETT--EEEEESSSS
T ss_pred             -HHhcCcc--------cCCc-c-cccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCC--EEEEEeecc
Confidence             0000000        0000 0 00000000000 0000111122233333 5 899999999999864  5555     


Q ss_pred             CCC---cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         617 QAG---SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       617 ~~g---~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                      .+|   +++.||+||||||++|..|++||.+..          .+..........+++++||     |+|+|..|+++
T Consensus       142 ~~g~~~~~~~~d~lviAtGs~p~~p~i~g~~~~----------~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~  209 (490)
T 1fec_A          142 PNSAVLETLDTEYILLATGSWPQHLGIEGDDLC----------ITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAY  209 (490)
T ss_dssp             TTSCEEEEEEEEEEEECCCEEECCCCSBTGGGC----------BCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEcCEEEEeCCCCCCCCCCCCccce----------ecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhh
Confidence            266   689999999999999999999997421          1111112223457899999     89999999877

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.32  E-value=6.7e-12  Score=139.46  Aligned_cols=157  Identities=15%  Similarity=0.130  Sum_probs=101.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+++|||+..            ||.+..... .                    
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~--G~~v~lie~~~------------GG~~~~~~~-~--------------------  255 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARK--GIRTGLMGERF------------GGQVLDTVD-I--------------------  255 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSST------------TGGGTTCSC-B--------------------
T ss_pred             CcccEEEECCcHHHHHHHHHHHhC--CCeEEEEECCC------------CCccccccc-c--------------------
Confidence            467999999999999999999997  78999998621            222110000 0                    


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEec-eEEEEEcC-----CCeEEcCC
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD-KIVSFDPE-----NNRVRTQA  618 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~-~v~~id~~-----~~~V~~~~  618 (706)
                                     +.   +   +..+     .....++...+...+ +.|++++.+ +|++++++     ..+|.+.+
T Consensus       256 ---------------~~---~---~~~~-----~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~  309 (521)
T 1hyu_A          256 ---------------EN---Y---ISVP-----KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETAS  309 (521)
T ss_dssp             ---------------CC---B---TTBS-----SBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETT
T ss_pred             ---------------cc---c---CCCC-----CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECC
Confidence                           00   0   0000     001112222233333 368999877 89999874     34678888


Q ss_pred             CcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         619 GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       619 g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      |+++.||+||+|||++|..|++||.+++...     ..............+++|+||     |+|+|..|++...
T Consensus       310 g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~-----~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~  379 (521)
T 1hyu_A          310 GAVLKARSIIIATGAKWRNMNVPGEDQYRTK-----GVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVE  379 (521)
T ss_dssp             SCEEEEEEEEECCCEEECCCCCTTTTTTTTT-----TEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBS
T ss_pred             CCEEEcCEEEECCCCCcCCCCCCChhhhcCc-----eEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCC
Confidence            9899999999999999999999997643221     111111111223467899999     8999998887653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.32  E-value=4.1e-13  Score=147.45  Aligned_cols=185  Identities=14%  Similarity=0.076  Sum_probs=105.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +++||+|||||+||+++|..|++.  +.+|+|||++. .          ||.|. +..+.|.+.++.....|....  ..
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~-~----------gG~~~-~~g~~psk~ll~~~~~~~~~~--~~   65 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQL--GLSTAIVEPKY-W----------GGVCL-NVGCIPSKALLRNAELVHIFT--KD   65 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC-T----------THHHH-HHSHHHHHHHHHHHHHHHHHH--HH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCC-C----------CCccc-ccCchhhHHHHHHHHHHHHHH--HH
Confidence            357999999999999999999998  78999999862 1          23332 222345554443322221110  00


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--cE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~~  621 (706)
                      ...+.+         .....    ..+...... ....+.+...+...+. .+++++.+++..+|.+..+|.+.+|  ++
T Consensus        66 ~~~~g~---------~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~  132 (464)
T 2a8x_A           66 AKAFGI---------SGEVT----FDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTES  132 (464)
T ss_dssp             TTTTTE---------EECCE----ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEE
T ss_pred             HHhcCC---------CCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEE
Confidence            000110         00000    000000000 0000111111222222 6899988887777665556666777  68


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||+|||++|..|+++|.+..         ..+..........+++++||     |+|+|..|+++..
T Consensus       133 ~~~d~lViAtG~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  195 (464)
T 2a8x_A          133 VTFDNAIIATGSSTRLVPGTSLSAN---------VVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGV  195 (464)
T ss_dssp             EEEEEEEECCCEEECCCTTCCCBTT---------EECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEcCEEEECCCCCCCCCCCCCCCce---------EEecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCC
Confidence            9999999999999999999886521         11111122223357899999     8999999887653

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.32  E-value=1.8e-12  Score=145.04  Aligned_cols=97  Identities=11%  Similarity=0.120  Sum_probs=67.2

Q ss_pred             cEE-EeceEEEEEcCC----CeEEcCCCcEEeeCEEEEecC--cccCccCCCCchhhhcccccccccccCccc-hhhhcc
Q psy8791         597 ATW-VKDKIVSFDPEN----NRVRTQAGSEISYEYMIVASG--IQMYYDRVKGGTTSLEDRGKMRGVSDGFST-VTWEQK  668 (706)
Q Consensus       597 v~~-~~~~v~~id~~~----~~V~~~~g~~i~yd~lViAtG--s~~~~p~i~G~~~~~~~~~~~~~~~~~~~~-~~~~~~  668 (706)
                      +++ ++.+|++++.+.    .+|++++|+++.||+||+|||  +.|..|++||++.+.+.     .+++..+. ...+..
T Consensus       111 ~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~-----~~hs~~~~~~~~~~~  185 (542)
T 1w4x_A          111 SGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGN-----LYHTGNWPHEPVDFS  185 (542)
T ss_dssp             GGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSE-----EEEGGGCCSSCCCCB
T ss_pred             ceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCc-----eEECCCCCCchhccC
Confidence            444 467888887643    267778888999999999999  57888999998643221     12222222 123346


Q ss_pred             CccEEEE-----cHHHHHHHHHHHhh--hhhhhcccc
Q psy8791         669 HKQYQLV-----SPEIRAKAYDLTKR--KMKKEAQWI  698 (706)
Q Consensus       669 ~k~vvVi-----G~E~A~~l~~~~~~--~~~~~~~~~  698 (706)
                      +|+|+||     |+|+|..+++.+.+  .+.+...|+
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~  222 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFA  222 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCE
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCccc
Confidence            8999999     79999999887654  355666664

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.32  E-value=3e-12  Score=140.21  Aligned_cols=90  Identities=16%  Similarity=0.221  Sum_probs=62.2

Q ss_pred             CCcE--E-EeceEEEEEcCCC----eEEcCC---C--cEEeeCEEEEecC--cccCccCCCCchhhhcccccccccccCc
Q psy8791         595 SGAT--W-VKDKIVSFDPENN----RVRTQA---G--SEISYEYMIVASG--IQMYYDRVKGGTTSLEDRGKMRGVSDGF  660 (706)
Q Consensus       595 ~gv~--~-~~~~v~~id~~~~----~V~~~~---g--~~i~yd~lViAtG--s~~~~p~i~G~~~~~~~~~~~~~~~~~~  660 (706)
                      .+++  + ++++|+.|+++..    +|++.+   |  .++.||+||+|||  +.|+.|++||++.+.+.......+.   
T Consensus       114 ~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~---  190 (464)
T 2xve_A          114 AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFR---  190 (464)
T ss_dssp             HTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCC---
T ss_pred             cCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhC---
Confidence            3665  4 5678999987655    666654   4  5789999999999  8999999999874322211111111   


Q ss_pred             cchhhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         661 STVTWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       661 ~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                        ......+|+|+||     |+|+|.+|++.+++
T Consensus       191 --~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~  222 (464)
T 2xve_A          191 --DALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK  222 (464)
T ss_dssp             --CGGGGTTSEEEEECCSTTHHHHHHHHHHTTCS
T ss_pred             --CHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCe
Confidence              1112367899999     99999999887654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.32  E-value=1.4e-13  Score=150.93  Aligned_cols=183  Identities=16%  Similarity=0.174  Sum_probs=104.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      +||+|||||+||+++|.+|++.  +.+|+|||+++..          ||.|. +..+.|.|.++.....+.....    .
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~----------GG~~~-~~g~~p~k~l~~~~~~~~~~~~----~   64 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQL--GMKVGVVEKEKAL----------GGTCL-RVGCIPSKALLETTERIYEAKK----G   64 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS----------SHHHH-HHSHHHHHHHHHHHHHHHHHHH----C
T ss_pred             CCEEEECCChhHHHHHHHHHHC--CCeEEEEeCCCCC----------CCccc-eecchhHHHHHHHHHHHHHHhh----h
Confidence            6899999999999999999998  7899999987543          33322 2223455554443221111000    0


Q ss_pred             CceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEeeC
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEISYE  625 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd  625 (706)
                      .+.+.       .. ...    ..+..+.... ...+.+...+...+. .+++++.+++..+|++...|.+ +|+++.||
T Consensus        65 ~~g~~-------~~-~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~-~g~~~~~d  131 (455)
T 2yqu_A           65 LLGAK-------VK-GVE----LDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEE-TGEELEAR  131 (455)
T ss_dssp             CTTEE-------EC-CEE----ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETT-TCCEEEEE
T ss_pred             cCCcc-------cC-CCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEee-CCEEEEec
Confidence            11110       00 000    0000000000 000111111222333 5899999988887664334444 67889999


Q ss_pred             EEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         626 YMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       626 ~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +||||||++|..|+++|.+.  ..      ..+..........+++++||     |+|+|..|+++..
T Consensus       132 ~lviAtG~~p~~~~~~g~~~--~~------v~~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~  191 (455)
T 2yqu_A          132 YILIATGSAPLIPPWAQVDY--ER------VVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGA  191 (455)
T ss_dssp             EEEECCCEEECCCTTBCCCS--SS------EECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCCCCCCCCCCc--Cc------EechHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            99999999999999888652  11      11111112223357899999     8999998877653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.31  E-value=1.6e-13  Score=151.41  Aligned_cols=194  Identities=14%  Similarity=0.091  Sum_probs=110.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..+||+|||||+||+++|..|++.  +.+|+|||+++...-    ....||.|. +..+.|.+.++.....+.....  .
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~gG----~~~~GG~~~-~~gciPsk~l~~~~~~~~~~~~--~   72 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEG----KTALGGTCL-NVGCIPSKALLDSSYKFHEAHE--S   72 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTS----SBCCSHHHH-HHSHHHHHHHHHHHHHHHHHHT--T
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCccCC----CCCcCCccc-cccHHHHHHHHHHHHHHHHHHH--H
Confidence            358999999999999999999998  889999999763221    111244432 3334565554443321111000  0


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--cE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~~  621 (706)
                      ...+.+.        .....    ..+....... ...+.+...+...+. .+++++.+++..+|+....|.+.+|  ++
T Consensus        73 ~~~~g~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~  140 (476)
T 3lad_A           73 FKLHGIS--------TGEVA----IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQV  140 (476)
T ss_dssp             SGGGTEE--------CSCCE----ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEE
T ss_pred             HHhcCcc--------cCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEE
Confidence            0000000        00000    0000000000 000111112222232 5899999999999888777887777  57


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      +.||+||||||++|..|+.++.+.  .      ...+..........+++++||     |+|+|..++++..
T Consensus       141 ~~~d~lvlAtG~~p~~~~~~~~~~--~------~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~  204 (476)
T 3lad_A          141 LDTENVILASGSKPVEIPPAPVDQ--D------VIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGA  204 (476)
T ss_dssp             ECCSCEEECCCEEECCCTTSCCCS--S------SEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEcCEEEEcCCCCCCCCCCCCCCc--c------cEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            999999999999998766555331  1      112222222333467899999     8999998877653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.29  E-value=3.4e-12  Score=133.78  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=97.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|||+++.+.          |.+...   .|.+.+               
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~g----------g~~~~~---~~~~~~---------------   53 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMR--GLSFRFVDPLPEPG----------GQLTAL---YPEKYI---------------   53 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSC----------HHHHHT---CTTSEE---------------
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCC----------Ceeecc---CCCcee---------------
Confidence            468999999999999999999987  78999999976542          211100   110000               


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEE-EeceEEEEEcCCC--eEEcCCCcE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATW-VKDKIVSFDPENN--RVRTQAGSE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~-~~~~v~~id~~~~--~V~~~~g~~  621 (706)
                                           +..+.++.+     ...++...+.+.. +.++++ ++.+|+.++.+..  +|.+.+|++
T Consensus        54 ---------------------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~  107 (335)
T 2zbw_A           54 ---------------------YDVAGFPKV-----YAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNA  107 (335)
T ss_dssp             ---------------------CCSTTCSSE-----EHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCE
T ss_pred             ---------------------eccCCCCCC-----CHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCE
Confidence                                 000000000     0111222222222 246777 5678999987653  466778888


Q ss_pred             EeeCEEEEecCc---ccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         622 ISYEYMIVASGI---QMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       622 i~yd~lViAtGs---~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      +.||+||+|||+   .|..|++||.+.....     .....+... ....+++|+||     |+|+|..|.+..
T Consensus       108 ~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~-----~~~~~~~~~-~~~~~~~v~viG~G~~g~e~a~~l~~~g  175 (335)
T 2zbw_A          108 YTAKAVIIAAGVGAFEPRRIGAPGEREFEGR-----GVYYAVKSK-AEFQGKRVLIVGGGDSAVDWALNLLDTA  175 (335)
T ss_dssp             EEEEEEEECCTTSEEEECCCCCTTTTTTBTT-----TEESSCSCG-GGGTTCEEEEECSSHHHHHHHHHTTTTS
T ss_pred             EEeCEEEECCCCCCCCCCCCCCCChhhccCc-----EEEEecCch-hhcCCCEEEEECCCHHHHHHHHHHHhhC
Confidence            999999999999   5777788887542211     111111111 12257889999     788888876543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.29  E-value=6.7e-13  Score=146.44  Aligned_cols=185  Identities=16%  Similarity=0.178  Sum_probs=102.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|||+++..          ||.|. +..+.|.+.++.....+......  
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~~~----------GG~~~-~~g~~psk~ll~~~~~~~~~~~~--   69 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTL----------GGVCL-NVGCIPSKALLHNAAVIDEVRHL--   69 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSCS----------SHHHH-HHSHHHHHHHHHHHHHHHHHHHG--
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCC----------CCcee-eecccchHHHHHHHHHHHHHHHH--
Confidence            468999999999999999999997  7899999986543          23222 22344555544432222111000  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC----
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG----  619 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g----  619 (706)
                       ..+.+.       ... .    ...+..+... ....+.+...+...+. .|++++.+++..++.....|.+.+|    
T Consensus        70 -~~~gi~-------~~~-~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~  136 (482)
T 1ojt_A           70 -AANGIK-------YPE-P----ELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYE  136 (482)
T ss_dssp             -GGGTCC-------CCC-C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred             -HhCCcc-------cCC-C----ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccc
Confidence             000000       000 0    0000000000 0000111111222223 6899998888777764334444455    


Q ss_pred             --------cEEeeCEEEEecCcccCccC-CCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHH
Q psy8791         620 --------SEISYEYMIVASGIQMYYDR-VKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYD  685 (706)
Q Consensus       620 --------~~i~yd~lViAtGs~~~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~  685 (706)
                              .++.||+||+|||++|..|+ +| .+.   .      ..+..........+++++||     |+|+|..|++
T Consensus       137 ~~~~~g~~~~i~ad~lViAtGs~p~~~~~i~-~~~---~------v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~  206 (482)
T 1ojt_A          137 QAAPTGEKKIVAFKNCIIAAGSRVTKLPFIP-EDP---R------IIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYST  206 (482)
T ss_dssp             EEEEEEEEEEEEEEEEEECCCEEECCCSSCC-CCT---T------EECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHH
T ss_pred             cccccCcceEEEcCEEEECCCCCCCCCCCCC-ccC---c------EEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHH
Confidence                    67999999999999998876 55 221   1      11111112223357899999     9999999987


Q ss_pred             HHh
Q psy8791         686 LTK  688 (706)
Q Consensus       686 ~~~  688 (706)
                      +..
T Consensus       207 ~G~  209 (482)
T 1ojt_A          207 LGS  209 (482)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.29  E-value=2e-13  Score=151.16  Aligned_cols=178  Identities=16%  Similarity=0.188  Sum_probs=92.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccc-ccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~  545 (706)
                      ++||+|||||+||+++|.+|++.  +.+|+|||+++.           ||.|.. ..+.|.|.++.+....... ....+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~-----------GG~c~~-~gc~P~k~l~~~a~~~~~~~~~~~~   67 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH--NAKVALVEKSRL-----------GGTCVN-VGCVPKKIMFNAASVHDILENSRHY   67 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSST-----------THHHHH-TSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCc-----------Cccccc-cCCcchHHHHHHHHHHHHHHhhHhc
Confidence            37999999999999999999997  889999998641           333322 2223443332221000000 00000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCC-----
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQA-----  618 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~-----  618 (706)
                          .+         ....    ...++.+... ....+.+...+...+. .+++++.++++.+|+  ++|.+.+     
T Consensus        68 ----g~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~  128 (500)
T 1onf_A           68 ----GF---------DTKF----SFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNN  128 (500)
T ss_dssp             ----TC---------CCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------
T ss_pred             ----CC---------ccCC----ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccc
Confidence                00         0000    0000000000 0001111122223333 689999998888775  3555533     


Q ss_pred             --------CcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHH
Q psy8791         619 --------GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYD  685 (706)
Q Consensus       619 --------g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~  685 (706)
                              ++++.||+||||||++|..|++||.+...          +......... +++++||     |+|+|..|++
T Consensus       129 ~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G~~~~~----------~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~  197 (500)
T 1onf_A          129 NKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIENTI----------SSDEFFNIKE-SKKIGIVGSGYIAVELINVIKR  197 (500)
T ss_dssp             ------------CBSSEEECCCCCBCCCSCTTGGGCE----------EHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHT
T ss_pred             cccccCCCceEEEeCEEEECCCCCCCCCCCCCCCccc----------CHHHHhccCC-CCeEEEECChHHHHHHHHHHHH
Confidence                    66899999999999999999999974211          1011111222 7899999     8999999877


Q ss_pred             HHh
Q psy8791         686 LTK  688 (706)
Q Consensus       686 ~~~  688 (706)
                      +..
T Consensus       198 ~g~  200 (500)
T 1onf_A          198 LGI  200 (500)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.29  E-value=3e-12  Score=134.09  Aligned_cols=167  Identities=17%  Similarity=0.082  Sum_probs=98.7

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +.++||+|||||++|+++|..|++.  +.+|+|||+......      ..||.+.....                     
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~~~------~~gg~~~~~~~---------------------   56 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMANDI------APGGQLTTTTD---------------------   56 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTB------CTTCGGGGCSE---------------------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccCcccc------CCCceeeeccc---------------------
Confidence            3467999999999999999999987  789999997211000      01121110000                     


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCC--eEEcCCCcE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENN--RVRTQAGSE  621 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~--~V~~~~g~~  621 (706)
                                     +.      ..+.++.   . ....++...+.+.+. .+++++.++|+.++.+.+  +|++ ++++
T Consensus        57 ---------------~~------~~~~~~~---~-~~~~~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~~~  110 (333)
T 1vdc_A           57 ---------------VE------NFPGFPE---G-ILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKA  110 (333)
T ss_dssp             ---------------EC------CSTTCTT---C-EEHHHHHHHHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SSEE
T ss_pred             ---------------cc------cCCCCcc---C-CCHHHHHHHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CCcE
Confidence                           00      0000000   0 001122222223222 689998888999998766  5666 7788


Q ss_pred             EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhh--ccCccEEEE-----cHHHHHHHHHHH
Q psy8791         622 ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWE--QKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      +.||+||+|||++|..|++||.+.. ......+............  ..+++|+||     |+|+|..|.++.
T Consensus       111 ~~~~~vv~A~G~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g  182 (333)
T 1vdc_A          111 ILADAVILAIGAVAKRLSFVGSGEV-LGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYG  182 (333)
T ss_dssp             EEEEEEEECCCEEECCCCCBTCSSS-SSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTS
T ss_pred             EEcCEEEECCCCCcCCCCCCCcccc-ccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcC
Confidence            9999999999999999999997641 0000001111111111111  457889999     888888876543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.29  E-value=1.2e-12  Score=145.63  Aligned_cols=177  Identities=15%  Similarity=0.101  Sum_probs=105.3

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      ++.++||||||||+||+++|.+|++.  +.+|+|||+++..          ||.|.. ..+.|.+.++.....+..... 
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~----------GG~~~~-~g~~p~k~l~~~~~~~~~~~~-  105 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFL----------GGSCPH-NACVPHHLFSDCAAELMLART-  105 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS----------SCHHHH-HSHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCC----------CCcccc-cCcCchHHHHHHHHHHHHHhh-
Confidence            34568999999999999999999998  7899999997642          333322 222444433322211000000 


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccc----cchh---hhc------cCCcEEE-eceEEEEEc
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSR----RPMK---SVL------PSGATWV-KDKIVSFDP  609 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~------~~gv~~~-~~~v~~id~  609 (706)
                                        .. .  +. .++.........+++.    ..+.   ..+      ..+++++ .++++++|+
T Consensus       106 ------------------~~-~--~g-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~  163 (523)
T 1mo9_A          106 ------------------FS-G--QY-WFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN  163 (523)
T ss_dssp             ------------------TT-T--ST-TCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET
T ss_pred             ------------------hh-h--cC-cHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC
Confidence                              00 0  00 0000000000011111    1111   233      3689997 999999986


Q ss_pred             CCCeEEcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccch-hhhccC-ccEEEE-----cHHHHHH
Q psy8791         610 ENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTV-TWEQKH-KQYQLV-----SPEIRAK  682 (706)
Q Consensus       610 ~~~~V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~-k~vvVi-----G~E~A~~  682 (706)
                        ++|.+. ++++.||+||||||++|..|++||.+.  ..+      .+..... .....+ ++++||     |+|+|..
T Consensus       164 --~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~~--~~v------~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~  232 (523)
T 1mo9_A          164 --HTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVNA--KGV------FDHATLVEELDYEPGSTVVVVGGSKTAVEYGCF  232 (523)
T ss_dssp             --TEEEET-TEEEEBSCEEECCCEECCCCCSTTTTS--BTE------EEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHH
T ss_pred             --CEEEEC-CEEEEeCEEEECCCCCCCCCCCCCccc--CcE------eeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHH
Confidence              467765 778999999999999999999999763  111      1111122 222345 899999     8999998


Q ss_pred             HHHHH
Q psy8791         683 AYDLT  687 (706)
Q Consensus       683 l~~~~  687 (706)
                      ++++.
T Consensus       233 l~~~G  237 (523)
T 1mo9_A          233 FNATG  237 (523)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            87765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.28  E-value=1.4e-12  Score=143.96  Aligned_cols=180  Identities=19%  Similarity=0.194  Sum_probs=104.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccc-ccccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD-KIVSF  545 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~  545 (706)
                      ++||+|||||+||+++|..|+++  +.+|+|||++. .          ||.|. +..+.|.+.++......... ....+
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~-~----------GG~~~-~~gcip~k~l~~~a~~~~~~~~~~~~   91 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGAL--GKRVAIAEEYR-I----------GGTCV-IRGCVPKKLYFYASQYAQEFSKSIGF   91 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-T----------THHHH-HHSHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--cCEEEEEeCCC-C----------CCcee-ccCccccHHHHHHHHHHHHHHHHHhC
Confidence            57999999999999999999998  88999999832 1          33332 22334554444332111100 00000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcC-CCcEE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQ-AGSEI  622 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~-~g~~i  622 (706)
                      +  +..          ....    ..+..+... ....+.+...+...+. .+++++.+++..+++.  ++.+. +++++
T Consensus        92 g--~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~--~v~v~~~~~~~  153 (484)
T 3o0h_A           92 G--WKY----------ADPI----FNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEH--TLELSVTGERI  153 (484)
T ss_dssp             T--BCC----------CCCE----ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETT--EEEETTTCCEE
T ss_pred             C--ccc----------CCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCC--EEEEecCCeEE
Confidence            0  000          0000    000000000 0001111122222233 6899999999999864  67766 77899


Q ss_pred             eeCEEEEecCcccC-ccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         623 SYEYMIVASGIQMY-YDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       623 ~yd~lViAtGs~~~-~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      .||+||||||++|. .|++||.+..          .+..........+++++||     |+|+|..++++..
T Consensus       154 ~~d~lviAtG~~p~~~p~i~G~~~~----------~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~  215 (484)
T 3o0h_A          154 SAEKILIATGAKIVSNSAIKGSDLC----------LTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGV  215 (484)
T ss_dssp             EEEEEEECCCEEECCC--CBTGGGS----------BCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EeCEEEEccCCCcccCCCCCCcccc----------ccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCC
Confidence            99999999999999 8999997521          1222222333468899999     7899988877643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.27  E-value=6.2e-12  Score=133.25  Aligned_cols=162  Identities=16%  Similarity=0.138  Sum_probs=96.9

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV  543 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~  543 (706)
                      ++.++||+|||||+||+++|..|++.  +.+|+|||+++...          |.+...   .|.+.              
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~g----------g~~~~~---~~~~~--------------   61 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMN--NISCRIIESMPQLG----------GQLAAL---YPEKH--------------   61 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC----------HHHHHT---CTTSE--------------
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCC----------Cccccc---CCCcc--------------
Confidence            44568999999999999999999987  78999999876532          221100   01000              


Q ss_pred             ccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEE-eceEEEEEcCCC---eEEcCC
Q psy8791         544 SFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWV-KDKIVSFDPENN---RVRTQA  618 (706)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~-~~~v~~id~~~~---~V~~~~  618 (706)
                                            .+..+.++.     ....++...+.+.+ ..+++++ +.+|+.++++..   +|.+.+
T Consensus        62 ----------------------~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~  114 (360)
T 3ab1_A           62 ----------------------IYDVAGFPE-----VPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNT  114 (360)
T ss_dssp             ----------------------ECCSTTCSS-----EEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETT
T ss_pred             ----------------------cccCCCCCC-----CCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECC
Confidence                                  000000000     00111222222222 2478874 568999998654   677888


Q ss_pred             CcEEeeCEEEEecCc---ccCccCCCC-chhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         619 GSEISYEYMIVASGI---QMYYDRVKG-GTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       619 g~~i~yd~lViAtGs---~~~~p~i~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      |+++.||+||+|||+   .|..|++|| .++....     .....+.. .....+++|+||     |+|+|..|.+..
T Consensus       115 g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~-----~v~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g  186 (360)
T 3ab1_A          115 GNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGS-----SVYYAVKS-VEDFKGKRVVIVGGGDSALDWTVGLIKNA  186 (360)
T ss_dssp             SCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTT-----TEESSCSC-GGGGTTCEEEEECSSHHHHHHHHHTTTTS
T ss_pred             CcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCc-----eEEEecCC-HHHcCCCcEEEECCCHHHHHHHHHHHhcC
Confidence            889999999999999   566677888 5432211     11111111 112357889999     788888776543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.27  E-value=5.8e-13  Score=147.12  Aligned_cols=183  Identities=9%  Similarity=0.068  Sum_probs=106.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++||+|||||+||+++|.+|++.  +.+|+|||+++           .||.|. +..|.|.|.++.+...+.....   .
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~--G~~V~liE~~~-----------~GGtc~-~~gciPsk~l~~~a~~~~~~~~---~   70 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH--TDKVVLIEGGA-----------YGTTCA-RVGCMPSKLLIAAADASYHASQ---T   70 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--CSCEEEEESSC-----------SSCHHH-HHSHHHHHHHHHHHHHHHHHTC---G
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCC-----------CCCccc-ccChhcCHHHHHHHHHHHHHhh---h
Confidence            48999999999999999999998  88999999854           144432 3445676666554422111100   0


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhc-c-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVL-P-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      +.+.+.         ....   ...+..+..... ..+.....+.... . .+++++.+++.+++.  ++|.+.+++++.
T Consensus        71 ~~~g~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~--~~v~~~~~~~~~  136 (492)
T 3ic9_A           71 DLFGIQ---------VDRI---SVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDE--HTLQVDDHSQVI  136 (492)
T ss_dssp             GGGTEE---------CSEE---EECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEET--TEEEETTTEEEE
T ss_pred             hhcCcC---------CCCC---ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecC--CEEEEcCCcEEE
Confidence            000000         0000   000000000000 0000101111111 1 256788999888875  478888888999


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|+++|...  .      ...+..........+++++||     |+|+|..|+++..
T Consensus       137 ~d~lViATGs~p~~p~~~~~~~--~------~v~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~  198 (492)
T 3ic9_A          137 AKRIVIATGSRPNYPEFLAAAG--S------RLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGV  198 (492)
T ss_dssp             EEEEEECCCEECCCCHHHHTTG--G------GEECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTC
T ss_pred             eCEEEEccCCCCcCCCCCCccC--C------cEEcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            9999999999999887665321  1      122222233334468999999     8999999987654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.26  E-value=6.1e-13  Score=146.03  Aligned_cols=181  Identities=15%  Similarity=0.141  Sum_probs=105.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      ++||+|||||++|+++|..|++.  +.+|+|||++.           .||.|. +..+.|.+.++.....+....   ..
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~--G~~V~liEk~~-----------~GG~~~-~~gcip~k~l~~~~~~~~~~~---~~   67 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAAL--GKKVAIAEEFR-----------YGGTCV-IRGCVPKKLYVYASQFAEHFE---DA   67 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSC-----------TTHHHH-HHSHHHHHHHHHHHHHHHHHH---HG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCC-----------CCCccc-ccCchhhHHHHHHHHHHHHHH---HH
Confidence            58999999999999999999998  88999999832           133332 223345444333321111000   00


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEc-CCCcEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRT-QAGSEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~-~~g~~i~  623 (706)
                      +.+.+.        .....    ..+..+... ....+.+...+...+. .+++++.+++..+++  ++|.+ .+++++.
T Consensus        68 ~~~g~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~~~~~~~~~  133 (463)
T 4dna_A           68 AGFGWT--------VGESR----FDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGP--NTVKLLASGKTVT  133 (463)
T ss_dssp             GGGTEE--------ECCCE----ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSS--SEEEETTTTEEEE
T ss_pred             HhcCcc--------cCCCC----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEecCCeEEE
Confidence            001110        00000    000000000 0001111112222222 589999999998875  47777 5778999


Q ss_pred             eCEEEEecCcccC-ccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMY-YDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~-~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|. .|++||.+..          .+..........+++++||     |+|+|..++++..
T Consensus       134 ~d~lviAtG~~p~~~p~i~G~~~~----------~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~  194 (463)
T 4dna_A          134 AERIVIAVGGHPSPHDALPGHELC----------ITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGV  194 (463)
T ss_dssp             EEEEEECCCEEECCCTTSTTGGGC----------BCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eCEEEEecCCCcccCCCCCCcccc----------ccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            9999999999999 9999997621          1111122223457899999     8899998877643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.25  E-value=1.5e-12  Score=147.62  Aligned_cols=86  Identities=14%  Similarity=0.109  Sum_probs=64.1

Q ss_pred             CCcEEEeceEEEEEcCCCeEEcCCC--cEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccE
Q psy8791         595 SGATWVKDKIVSFDPENNRVRTQAG--SEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQY  672 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~~V~~~~g--~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v  672 (706)
                      .+|+++.+.+..+++....+...+|  +++.||+||||||++|+.|++||.++..-         +..........++++
T Consensus       219 ~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~~~---------~~~~~~~~~~~~~~v  289 (598)
T 2x8g_A          219 NQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGI---------TSDDLFSLPYFPGKT  289 (598)
T ss_dssp             TTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCCSSTTHHHHCE---------EHHHHTTCSSCCCSE
T ss_pred             CCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCCCCCCcccceE---------cHHHHhhCccCCCEE
Confidence            5899999999999987656666667  47999999999999999999999754211         111111222357889


Q ss_pred             EEE-----cHHHHHHHHHHHhh
Q psy8791         673 QLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       673 vVi-----G~E~A~~l~~~~~~  689 (706)
                      +||     |+|+|..|+++..+
T Consensus       290 vViGgG~~g~E~A~~l~~~g~~  311 (598)
T 2x8g_A          290 LVIGASYVALECAGFLASLGGD  311 (598)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCC
T ss_pred             EEECCCHHHHHHHHHHHHcCCE
Confidence            999     89999999887643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.25  E-value=2.1e-12  Score=142.41  Aligned_cols=189  Identities=15%  Similarity=0.167  Sum_probs=104.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +.++||+|||||+||+++|..|++.  +.+|+|||+++..          ||.|. +..+.|.|.++.....|....  .
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~----------GG~~~-~~g~~psk~l~~~~~~~~~~~--~   67 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKL----------GGTCL-NVGCIPSKALLNNSHLFHQMH--T   67 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS----------SHHHH-HHSHHHHHHHHHHHHHHHHHH--H
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCc----------CCccc-eeccHHHHHHHHHHHHHHHHH--H
Confidence            4568999999999999999999998  7899999986543          33332 223356555544332221110  0


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--c
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--S  620 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~  620 (706)
                      ....+.+.      . .....    ..+..+... ....+.+...+...+. .|++++.+++..+|.+..+|.+.+|  +
T Consensus        68 ~~~~~gi~------~-~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~  136 (478)
T 1v59_A           68 EAQKRGID------V-NGDIK----INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEG  136 (478)
T ss_dssp             TSGGGTEE------E-CSCEE----ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTT
T ss_pred             HHHhcCcc------c-CCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcc
Confidence            00001110      0 00000    000000000 0000111111222222 6899988887776655445666666  5


Q ss_pred             E------EeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHH
Q psy8791         621 E------ISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLT  687 (706)
Q Consensus       621 ~------i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~  687 (706)
                      +      +.||+||+|||++|.  .+||.+  ... .   ...+..........+++++||     |+|+|..|+++.
T Consensus       137 ~~~~~~~i~~d~lViAtGs~p~--~~~g~~--~~~-~---~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g  206 (478)
T 1v59_A          137 TVKEDHILDVKNIIVATGSEVT--PFPGIE--IDE-E---KIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLG  206 (478)
T ss_dssp             CCSSCEEEEEEEEEECCCEEEC--CCTTCC--CCS-S---SEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             cccccceEEeCEEEECcCCCCC--CCCCCC--CCC-c---eEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcC
Confidence            6      999999999999984  567764  211 1   111211222222357899999     899999988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.24  E-value=8.7e-12  Score=136.19  Aligned_cols=92  Identities=13%  Similarity=0.131  Sum_probs=59.9

Q ss_pred             CcEE-EeceEEEEEcCCC--eEEcCC---Cc---EEeeCEEEEecCc--ccCccCCCCchhhhccc-ccccccccCccch
Q psy8791         596 GATW-VKDKIVSFDPENN--RVRTQA---GS---EISYEYMIVASGI--QMYYDRVKGGTTSLEDR-GKMRGVSDGFSTV  663 (706)
Q Consensus       596 gv~~-~~~~v~~id~~~~--~V~~~~---g~---~i~yd~lViAtGs--~~~~p~i~G~~~~~~~~-~~~~~~~~~~~~~  663 (706)
                      +..+ ++++|+.|+.+..  +|++.+   |+   ++.||+||+|||+  .|+.|++||++++...- ..+ .+...+. .
T Consensus       129 ~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v-~~~~~~~-~  206 (447)
T 2gv8_A          129 LPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSV-LHSSLFR-E  206 (447)
T ss_dssp             GGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSE-EEGGGCC-C
T ss_pred             hCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccE-EEecccC-C
Confidence            3444 5778999987655  566554   66   7999999999999  88889999987432110 000 0111111 1


Q ss_pred             hhhccCccEEEE-----cHHHHHHHHHHHhh
Q psy8791         664 TWEQKHKQYQLV-----SPEIRAKAYDLTKR  689 (706)
Q Consensus       664 ~~~~~~k~vvVi-----G~E~A~~l~~~~~~  689 (706)
                      .....+++|+||     |+|+|.+|++.+++
T Consensus       207 ~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~  237 (447)
T 2gv8_A          207 PELFVGESVLVVGGASSANDLVRHLTPVAKH  237 (447)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCS
T ss_pred             hhhcCCCEEEEEccCcCHHHHHHHHHHHhCC
Confidence            112357899999     89999998877643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.16  E-value=3.1e-11  Score=132.49  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=36.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCC---CcEEEECCCCCCcCCc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGK---GQVSIVEPTDDHYYQP  508 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~---~~i~vid~~~~~~~~~  508 (706)
                      .++||||||||+||+++|..|++..+.   .+|+|||+++.+.|.+
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            467999999999999999999998322   8999999988766544

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.16  E-value=6.1e-11  Score=125.92  Aligned_cols=82  Identities=9%  Similarity=0.043  Sum_probs=54.6

Q ss_pred             CCcEEEe-ceEEEEEcCC--CeEEcCCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCcc
Q psy8791         595 SGATWVK-DKIVSFDPEN--NRVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQ  671 (706)
Q Consensus       595 ~gv~~~~-~~v~~id~~~--~~V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  671 (706)
                      .|++++. .+|+.++++.  ..|.+.++ ++.||+||+|||+.+. |.+|+ ..    ..    +...+.. ......++
T Consensus       101 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~ip~-~~----~~----~~~~~~~-~~~~~~~~  168 (369)
T 3d1c_A          101 YELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PKKPF-KY----GI----HYSEIED-FDNFNKGQ  168 (369)
T ss_dssp             TTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCCCS-SS----CE----EGGGCSC-GGGSCSSE
T ss_pred             cCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCCCC-Cc----ee----chhhcCC-hhhcCCCE
Confidence            6888865 4799999864  35666666 7999999999999875 66776 11    00    0011110 11124568


Q ss_pred             EEEE-----cHHHHHHHHHHHh
Q psy8791         672 YQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       672 vvVi-----G~E~A~~l~~~~~  688 (706)
                      |+||     |+|+|..|.+...
T Consensus       169 vvVvG~G~~g~e~a~~l~~~g~  190 (369)
T 3d1c_A          169 YVVIGGNESGFDAAYQLAKNGS  190 (369)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCcCHHHHHHHHHhcCC
Confidence            9999     8999999887653

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.10  E-value=1.9e-11  Score=133.25  Aligned_cols=150  Identities=13%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             ccccccccCcchhHHHHHHHHHh-hcC----CCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTS-RLG----KGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD  540 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~-~~~----~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~  540 (706)
                      ++++|+|||||+||+++|..|++ ..+    +.+|+|||+.+.++          |.+...  ..|              
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g----------g~~~~g--v~p--------------   55 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW----------GLVRSG--VAP--------------   55 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS----------THHHHT--SCT--------------
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC----------Cccccc--cCC--------------
Confidence            46799999999999999999998 655    78999999976532          111100  000              


Q ss_pred             cccccCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC
Q psy8791         541 KIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG  619 (706)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g  619 (706)
                                            .               .....++...+...+. .+++++.+. . +   .+.|+++++
T Consensus        56 ----------------------~---------------~~~~~~~~~~~~~~~~~~~v~~~~~v-~-v---~~~v~~~~~   93 (456)
T 1lqt_A           56 ----------------------D---------------HPKIKSISKQFEKTAEDPRFRFFGNV-V-V---GEHVQPGEL   93 (456)
T ss_dssp             ----------------------T---------------CTGGGGGHHHHHHHHTSTTEEEEESC-C-B---TTTBCHHHH
T ss_pred             ----------------------C---------------CCCHHHHHHHHHHHHhcCCCEEEeeE-E-E---CCEEEECCC
Confidence                                  0               0001122222333332 588887652 1 3   245666665


Q ss_pred             cEEeeCEEEEecCcc-cCccCCCCchhhhcccccccccccCc----cc-hhh-hccCccEEEE-----cHHHHHHHHHH
Q psy8791         620 SEISYEYMIVASGIQ-MYYDRVKGGTTSLEDRGKMRGVSDGF----ST-VTW-EQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       620 ~~i~yd~lViAtGs~-~~~p~i~G~~~~~~~~~~~~~~~~~~----~~-~~~-~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                       ++.||+||||||+. +..|++||.+  +..+...+.+...+    .. ..+ ...+++|+||     |+|+|..|.+.
T Consensus        94 -~~~~d~lViAtG~~~~~~~~ipG~~--~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~  169 (456)
T 1lqt_A           94 -SERYDAVIYAVGAQSDRMLNIPGED--LPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTD  169 (456)
T ss_dssp             -HHHSSEEEECCCCCEECCCCCTTTT--STTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSC
T ss_pred             -eEeCCEEEEeeCCCCCCCCCCCCCC--CCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhh
Confidence             58999999999997 6888999975  33322222221100    00 111 1257889999     89999998864

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.09  E-value=7.1e-11  Score=129.45  Aligned_cols=31  Identities=19%  Similarity=0.434  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT   64 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~   64 (706)
                      ||||||||+||++||..|++.  +.+|+|||+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~--G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRA--GKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEeCC
Confidence            699999999999999999998  8999999998

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.07  E-value=5.6e-11  Score=129.64  Aligned_cols=149  Identities=14%  Similarity=0.175  Sum_probs=89.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .+++|+|||||+||+++|..|++..++.+|+|||+++..+          |+....  +.|.                  
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g----------g~~~~g--~~p~------------------   54 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF----------GLVRFG--VAPD------------------   54 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC----------THHHHT--SCTT------------------
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC----------ceeecc--cCCC------------------
Confidence            3568999999999999999999985559999999876542          111000  0000                  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEee
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~y  624 (706)
                                                       ....+++...+...++ .|++++.+...     .+.|++.+. .+.|
T Consensus        55 ---------------------------------~~~~~~~~~~~~~~~~~~gv~~~~~~~v-----~~~V~~~~~-~~~~   95 (460)
T 1cjc_A           55 ---------------------------------HPEVKNVINTFTQTARSDRCAFYGNVEV-----GRDVTVQEL-QDAY   95 (460)
T ss_dssp             ---------------------------------CGGGGGHHHHHHHHHTSTTEEEEBSCCB-----TTTBCHHHH-HHHS
T ss_pred             ---------------------------------CccHHHHHHHHHHHHHhCCcEEEeeeEE-----eeEEEeccc-eEEc
Confidence                                             0001112222333333 58888665322     234555443 5789


Q ss_pred             CEEEEecCccc-CccCCCCchhhhcccccccccccCcc----chhh--hccCccEEEE-----cHHHHHHHHH
Q psy8791         625 EYMIVASGIQM-YYDRVKGGTTSLEDRGKMRGVSDGFS----TVTW--EQKHKQYQLV-----SPEIRAKAYD  685 (706)
Q Consensus       625 d~lViAtGs~~-~~p~i~G~~~~~~~~~~~~~~~~~~~----~~~~--~~~~k~vvVi-----G~E~A~~l~~  685 (706)
                      |+||||||+.+ +.|++||.+  ...+...+.+...+.    ...+  ...+++|+||     |+|+|..|.+
T Consensus        96 d~lVlAtGs~~~~~~~ipG~~--~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~  166 (460)
T 1cjc_A           96 HAVVLSYGAEDHQALDIPGEE--LPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLT  166 (460)
T ss_dssp             SEEEECCCCCEECCCCCTTTT--STTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHS
T ss_pred             CEEEEecCcCCCCCCCCCCCC--CCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhh
Confidence            99999999995 778999975  222222222211000    0011  1247889999     9999999873

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.00  E-value=1.2e-10  Score=126.69  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=33.5

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ...++|+|||||+||+++|..|++.  +.+|+|||+++..
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~--G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAK--GYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCC
Confidence            3567999999999999999999998  7899999987643

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.96  E-value=1.2e-10  Score=133.56  Aligned_cols=140  Identities=17%  Similarity=0.201  Sum_probs=86.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|+++  +.+|+|||+++...+          .+..... .|      ..           
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~gg----------~~~~~~~-~~------~~-----------  421 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIGG----------QFNIAKQ-IP------GK-----------  421 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSCT----------THHHHTT-ST------TC-----------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCC----------eeecccc-CC------CH-----------
Confidence            467999999999999999999987  789999999776432          1111000 00      00           


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cCCcEEEeceEEEEEcCCCeEEcCCCcEE-e
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEI-S  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~~~v~~id~~~~~V~~~~g~~i-~  623 (706)
                                                        ....++...+...+ +.|++++.++.+..            ..+ .
T Consensus       422 ----------------------------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~------------~~~~~  455 (671)
T 1ps9_A          422 ----------------------------------EEFYETLRYYRRMIEVTGVTLKLNHTVTA------------DQLQA  455 (671)
T ss_dssp             ----------------------------------TTHHHHHHHHHHHHHHHTCEEEESCCCCS------------SSSCC
T ss_pred             ----------------------------------HHHHHHHHHHHHHHHHcCCEEEeCcEecH------------HHhhc
Confidence                                              00001111122222 24788866543211            124 8


Q ss_pred             eCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      ||+||||||++|..|++||.+.  ..+......+.     .....+++|+||     |+|+|..|+++..
T Consensus       456 ~d~lviAtG~~p~~~~i~G~~~--~~v~~~~~~l~-----~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~  518 (671)
T 1ps9_A          456 FDETILASGIVPRTPPIDGIDH--PKVLSYLDVLR-----DKAPVGNKVAIIGCGGIGFDTAMYLSQPGE  518 (671)
T ss_dssp             SSEEEECCCEEECCCCCBTTTS--TTEEEHHHHHT-----SCCCCCSEEEEECCHHHHHHHHHHHTCCSS
T ss_pred             CCEEEEccCCCcCCCCCCCCCC--CcEeeHHHHhh-----CCCCCCCeEEEECCChhHHHHHHHHHhcCC
Confidence            9999999999999999999763  22211111111     112357899999     8999999886653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.95  E-value=3.7e-10  Score=134.10  Aligned_cols=156  Identities=12%  Similarity=0.064  Sum_probs=92.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||||||||+||++||..+++.  +.+|+|||+++..          ||.+. + +  + +..+.             
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~--G~~V~lie~~~~~----------GG~~~-~-~--~-k~~i~-------------  176 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRS--GARVMLLDERAEA----------GGTLL-D-T--A-GEQID-------------  176 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS----------SGGGG-G-S--S-CCEET-------------
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCC----------Cceec-c-C--C-ccccC-------------
Confidence            467999999999999999999998  7899999987653          22222 1 0  0 00000             


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccc-hhhhcc-CCcEEEe-ceEEEEEcCCCe---------
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP-MKSVLP-SGATWVK-DKIVSFDPENNR---------  613 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~gv~~~~-~~v~~id~~~~~---------  613 (706)
                                      .                . ...+.... ...+.+ .+++++. .+|..++.++..         
T Consensus       177 ----------------~----------------~-~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~  223 (965)
T 2gag_A          177 ----------------G----------------M-DSSAWIEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVH  223 (965)
T ss_dssp             ----------------T----------------E-EHHHHHHHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTT
T ss_pred             ----------------C----------------C-CHHHHHHHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeeccc
Confidence                            0                0 00001111 112222 3788764 478888765431         


Q ss_pred             --EEc------CCCcEEeeCEEEEecCcccCccCCCCchhhhcccccccccccCccchhhh-ccCccEEEE-----cHHH
Q psy8791         614 --VRT------QAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWE-QKHKQYQLV-----SPEI  679 (706)
Q Consensus       614 --V~~------~~g~~i~yd~lViAtGs~~~~p~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~vvVi-----G~E~  679 (706)
                        +.+      .++.++.||+||||||++|+.|++||.+  ...+.......+.  ...+. ...++++||     |+|+
T Consensus       224 ~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~--~~gv~~~~~~~~~--l~~~~~~~gk~vvViGgG~~g~E~  299 (965)
T 2gag_A          224 LDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENND--RPGIMLAGAVRSY--LNRYGVRAGARIAVATTNDSAYEL  299 (965)
T ss_dssp             CSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCC--STTEEEHHHHHHH--HHTTCEESCSSEEEEESSTTHHHH
T ss_pred             ccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCC--CCCEEEhHHHHHH--HHhcCCCCCCeEEEEcCCHHHHHH
Confidence              111      1123689999999999999999999976  2222111111010  00111 234789998     8999


Q ss_pred             HHHHHHHHh
Q psy8791         680 RAKAYDLTK  688 (706)
Q Consensus       680 A~~l~~~~~  688 (706)
                      |..|.++..
T Consensus       300 A~~L~~~G~  308 (965)
T 2gag_A          300 VRELAATGG  308 (965)
T ss_dssp             HHHHGGGTC
T ss_pred             HHHHHHcCC
Confidence            998877653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.94  E-value=2.8e-11  Score=126.35  Aligned_cols=72  Identities=10%  Similarity=-0.091  Sum_probs=48.1

Q ss_pred             EEeecEEEECCCCCchhhhhcCCCCCCCCceeeCccccccCCCCCEEEccccCCC--CCC---chHHHHHHhHHHHHHHH
Q psy8791         309 RLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNL--PTS---KTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       309 ~i~~D~vI~a~G~~~~~~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~--~~~---~~~~~a~~qg~~~a~ni  383 (706)
                      .+++|.++.+.|.++.....      ..+.+.+|. .++ |+.|+|||+||++..  +.+   ++...++..|+.+|+.|
T Consensus       249 ~~~~~~~~~~~g~~~~~~~~------~e~~iv~~~-~~~-t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I  320 (326)
T 3fpz_A          249 IVDIDQNQKLGGMKGLDMNH------AEHDVVIHS-GAY-AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQI  320 (326)
T ss_dssp             HHHHCTTCCCCCCCCBCHHH------HHHHHHHHC-EEC-TTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHH
T ss_pred             EEecCceeeecceecccccc------cCCeEEECC-CeE-ECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHH
Confidence            45677777778877753221      124566666 444 899999999999752  111   12234567899999999


Q ss_pred             HHHHc
Q psy8791         384 SAVMK  388 (706)
Q Consensus       384 ~~~l~  388 (706)
                      .+.|+
T Consensus       321 ~~~la  325 (326)
T 3fpz_A          321 LKHFA  325 (326)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98874

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.90  E-value=7.3e-10  Score=122.21  Aligned_cols=116  Identities=12%  Similarity=0.097  Sum_probs=76.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.   .+|+|||+++...+...         . ...                      
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~---------~-~~~----------------------  151 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMW---------L-KGI----------------------  151 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGG---------G-TCS----------------------
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeee---------c-ccc----------------------
Confidence            467999999999999999999986   89999999876532110         0 000                      


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEE-EeceEEEEEcCCCeEEc---CCCc-
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATW-VKDKIVSFDPENNRVRT---QAGS-  620 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~v~~id~~~~~V~~---~~g~-  620 (706)
                                         .  . +.++.      ...++...+.+.+..++++ ++.+|..|+.+.+.+.+   ++++ 
T Consensus       152 -------------------~--~-~g~~~------~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~  203 (493)
T 1y56_A          152 -------------------K--Q-EGFNK------DSRKVVEELVGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKL  203 (493)
T ss_dssp             -------------------E--E-TTTTE------EHHHHHHHHHHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEE
T ss_pred             -------------------c--c-CCCCC------CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeE
Confidence                               0  0 00000      0111112222222457887 45678888887765433   3453 


Q ss_pred             -EEeeCEEEEecCcccCccCCCCch
Q psy8791         621 -EISYEYMIVASGIQMYYDRVKGGT  644 (706)
Q Consensus       621 -~i~yd~lViAtGs~~~~p~i~G~~  644 (706)
                       .+.||+||||||+.|..|++||.+
T Consensus       204 ~~~~~d~lvlAtGa~~~~~~~~g~~  228 (493)
T 1y56_A          204 IEILAKRVVLATGAIDSTMLFENND  228 (493)
T ss_dssp             EEEEESCEEECCCEEECCCCCTTTT
T ss_pred             EEEECCEEEECCCCCccCCCCCCCC
Confidence             689999999999999999999976

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.89  E-value=2.2e-10  Score=132.23  Aligned_cols=37  Identities=16%  Similarity=0.241  Sum_probs=33.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+++|+|||||+||+++|..|+++  +.+|+|||+++..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~--G~~Vtlie~~~~~  424 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKI  424 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSST
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCc
Confidence            467999999999999999999998  7899999997653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.81  E-value=1.2e-09  Score=125.64  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||+||+++|..|+++  +.+|+|||+++..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~--G~~V~liE~~~~~  426 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVR--GYDVVLAEAGRDL  426 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence            467999999999999999999998  8999999997654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.78  E-value=2.9e-08  Score=109.90  Aligned_cols=59  Identities=5%  Similarity=0.026  Sum_probs=50.7

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCc
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      ...+.+.+.+.+++.|++|+++++|++|..++++++.+.+++|+++.||.||.+++...
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            46788899999999999999999999999888888877788999999999999877543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.76  E-value=1.7e-09  Score=129.38  Aligned_cols=151  Identities=15%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCC-cEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      ..+||+|||||+||+++|..|++.  +. +|+|||+.+..          ||....   ..|-                 
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~--G~~~Vtv~E~~~~~----------GG~~~~---~ip~-----------------  233 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYV----------GGLSTS---EIPQ-----------------  233 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSC----------STHHHH---TSCT-----------------
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc--CCCcEEEEeCCCCC----------Cccccc---cCCc-----------------
Confidence            467999999999999999999998  66 79999986543          222110   0000                 


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccc-cchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSR-RPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                                                 +.       ...+.. .....+.+.||+++.++++.    .+.|++++++++.
T Consensus       234 ---------------------------~~-------~~~~~~~~~~~~~~~~gv~~~~~~~v~----~~~v~~~~~~~~~  275 (1025)
T 1gte_A          234 ---------------------------FR-------LPYDVVNFEIELMKDLGVKIICGKSLS----ENEITLNTLKEEG  275 (1025)
T ss_dssp             ---------------------------TT-------SCHHHHHHHHHHHHTTTCEEEESCCBS----TTSBCHHHHHHTT
T ss_pred             ---------------------------cc-------CCHHHHHHHHHHHHHCCcEEEcccEec----cceEEhhhcCccC
Confidence                                       00       000011 11122233689987776542    1346666666688


Q ss_pred             eCEEEEecCc-ccCccCC-CCchhhhcccccccccccCcc---------ch-hhhccCccEEEE-----cHHHHHHHHHH
Q psy8791         624 YEYMIVASGI-QMYYDRV-KGGTTSLEDRGKMRGVSDGFS---------TV-TWEQKHKQYQLV-----SPEIRAKAYDL  686 (706)
Q Consensus       624 yd~lViAtGs-~~~~p~i-~G~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~k~vvVi-----G~E~A~~l~~~  686 (706)
                      ||+||||||+ +|+.+++ ||++.. ..+.....++....         .. .....+++|+||     |+|+|..+.++
T Consensus       276 ~d~vvlAtGa~~p~~l~~~~G~~~~-~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~  354 (1025)
T 1gte_A          276 YKAAFIGIGLPEPKTDDIFQGLTQD-QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRC  354 (1025)
T ss_dssp             CCEEEECCCCCEECCCGGGTTCCTT-TTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHT
T ss_pred             CCEEEEecCCCCCCCCCCCCCCCCC-CCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHc
Confidence            9999999999 5876654 465421 11111111111000         00 012235689999     89999888776


Q ss_pred             H
Q psy8791         687 T  687 (706)
Q Consensus       687 ~  687 (706)
                      .
T Consensus       355 G  355 (1025)
T 1gte_A          355 G  355 (1025)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.76  E-value=7.9e-09  Score=97.51  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      |++|+|||||++|+.+|..|++.  +.+|+|||+++.......            .                        
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~--g~~v~lie~~~~~~~~~~------------~------------------------   42 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARA--GLKVLVLDGGRSKVKGVS------------R------------------------   42 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSCCTTTTCS------------C------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCcccCch------------h------------------------
Confidence            57999999999999999999998  789999998653210000            0                        


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEEeceEEEEEcCCC--eEEcCCCcEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENN--RVRTQAGSEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~--~V~~~~g~~i~  623 (706)
                                   +...      +.++.    .....++...+.+.+. .|++++.++|++++.+..  .|++++| ++.
T Consensus        43 -------------~~~~------~~~~~----~~~~~~~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~   98 (180)
T 2ywl_A           43 -------------VPNY------PGLLD----EPSGEELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG-VEK   98 (180)
T ss_dssp             -------------CCCS------TTCTT----CCCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC-EEE
T ss_pred             -------------hhcc------CCCcC----CCCHHHHHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC-EEE
Confidence                         0000      00000    0001112222333332 689997669999987543  5677788 899


Q ss_pred             eCEEEEecCcccCccCCCCc
Q psy8791         624 YEYMIVASGIQMYYDRVKGG  643 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~  643 (706)
                      +|.||+|+|..|..+...|+
T Consensus        99 ad~vI~A~G~~~~~~~~~g~  118 (180)
T 2ywl_A           99 AERLLLCTHKDPTLPSLLGL  118 (180)
T ss_dssp             EEEEEECCTTCCHHHHHHTC
T ss_pred             ECEEEECCCCCCCccccCCC
Confidence            99999999999865433343

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.74  E-value=1.3e-08  Score=110.27  Aligned_cols=91  Identities=11%  Similarity=0.080  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCC--------CCch-hhhhc--CCCCC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPP--------MGPV-PELAT--SRLVD  334 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G--------~~~~-~~~~~--~~l~~  334 (706)
                      ..+...++..+++.| +++++++|++|+.+++.+.+. +++|+++.||.||+|+|        +.|+ +....  .+...
T Consensus       204 ~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~-~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~  281 (431)
T 3k7m_X          204 NGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVT-VKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGH  281 (431)
T ss_dssp             TCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEE-ETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCC
T ss_pred             CcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEE-ECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCC
Confidence            345566667777788 999999999998766656544 45778899999999999        7777 22111  12223


Q ss_pred             CCCceeeCccccccCCCCCEEEcccc
Q psy8791         335 QSGYVNVDKATLQHVKYSNVFAIGDC  360 (706)
Q Consensus       335 ~~G~i~vd~~~l~~~~~~~Ifa~GD~  360 (706)
                      ....++|+. .++ +..++||+.||+
T Consensus       282 ~~~~~kv~~-~~~-~~~~~i~~~~d~  305 (431)
T 3k7m_X          282 GGQGLKILI-HVR-GAEAGIECVGDG  305 (431)
T ss_dssp             CCCEEEEEE-EEE-SCCTTEEEEBSS
T ss_pred             CcceEEEEE-EEC-CCCcCceEcCCC
Confidence            334488998 566 678999999986

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.72  E-value=9.6e-08  Score=101.91  Aligned_cols=58  Identities=7%  Similarity=0.069  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE---eCCCceEEeecEEEECCCCCc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK---SEDKTERLPYAIMHVTPPMGP  323 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~---~~~~g~~i~~D~vI~a~G~~~  323 (706)
                      ..+...+.+.+.+.|++++.++++..+..+++.+..+   ..+++.++.+|+||-|.|...
T Consensus       102 ~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A          102 DKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence            3455666777778899999999999887666554332   222345789999999999765

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.68  E-value=4.5e-09  Score=112.49  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |+.+||+|||||++|+++|..++++  +.+|+|+|+++..
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~--G~~V~vlEk~~~~   39 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKI   39 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            4568999999999999999999998  7899999997754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.63  E-value=3e-07  Score=98.64  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=47.5

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.+++.||+++++++|+++..+++.+.+. +++| ++.+|.||+|+|..+.
T Consensus       131 ~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~-~~~g-~i~ad~VIlAtG~~S~  188 (417)
T 3v76_A          131 AKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVT-TSAG-TVDAASLVVASGGKSI  188 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEE-ETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEE-ECCc-EEEeeEEEECCCCccC
Confidence            35788888899999999999999999998766555543 3455 8999999999999874

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.62  E-value=3.8e-07  Score=96.26  Aligned_cols=76  Identities=5%  Similarity=-0.086  Sum_probs=57.0

Q ss_pred             EeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEEEeCCCc--eEEeecEEEECCCCCchhhhhcC-C
Q psy8791         256 CTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVFKSEDKT--ERLPYAIMHVTPPMGPVPELATS-R  331 (706)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~~~~~~g--~~i~~D~vI~a~G~~~~~~~~~~-~  331 (706)
                      ..+......+..+.+.+.+.+++.|++++++++|+++..+++. +.+ .+++|  .++.+|.||+|+|.+...++... |
T Consensus       140 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g  218 (369)
T 3dme_A          140 VSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFEL-DFGGAEPMTLSCRVLINAAGLHAPGLARRIEG  218 (369)
T ss_dssp             EETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEE-EECTTSCEEEEEEEEEECCGGGHHHHHHTEET
T ss_pred             ECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEE-EECCCceeEEEeCEEEECCCcchHHHHHHhcC
Confidence            3333333445788889999999999999999999999876443 433 34455  58999999999999987777655 4


Q ss_pred             C
Q psy8791         332 L  332 (706)
Q Consensus       332 l  332 (706)
                      +
T Consensus       219 ~  219 (369)
T 3dme_A          219 I  219 (369)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.61  E-value=9.4e-08  Score=105.41  Aligned_cols=44  Identities=18%  Similarity=0.326  Sum_probs=33.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhc------------CCCcEEEECCCCCCcCCc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRL------------GKGQVSIVEPTDDHYYQP  508 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~------------~~~~i~vid~~~~~~~~~  508 (706)
                      ..++||||||+|++||++|..|++..            +......+|+.+.+.|.+
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~   92 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHS   92 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSG
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCC
Confidence            35789999999999999999998752            123566778877665443

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.59  E-value=4.9e-07  Score=98.13  Aligned_cols=74  Identities=11%  Similarity=-0.034  Sum_probs=57.2

Q ss_pred             EEEeCCC-cCCCchhHHHHHHHHHHhCCceEEcCC---ceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhh
Q psy8791         254 TYCTGMG-VLFPSPFYAEKIHDILIGRGVDVHKGK---ALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPEL  327 (706)
Q Consensus       254 ~l~~~~~-~~~~~~~~~~~~~~~l~~~gV~v~~~~---~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~  327 (706)
                      .++.+.. ....+..+...+.+.+++.|+++++++   +|+++..+++.++.+.+.+|+++.+|.||+|+|......+
T Consensus       148 g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~  225 (438)
T 3dje_A          148 GYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFL  225 (438)
T ss_dssp             EEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTS
T ss_pred             EEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhc
Confidence            3344444 334456788889999999999999999   9999987666676455667889999999999999876554

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.59  E-value=1.2e-08  Score=109.45  Aligned_cols=158  Identities=18%  Similarity=0.266  Sum_probs=77.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      .++||+|||||+||+++|..|++.  +.+|+|+|+++......  ...++|.|+..........++.....+.......+
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~--G~~V~llEk~~~~g~~~--~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~  101 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKR--GRRVLVIDHARAPGEKI--RISGGGRCNFTNIHASPRNFLSGNPHFCKSALARY  101 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHH--HHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCcee--EEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhc
Confidence            467999999999999999999998  88999999987643111  01234555443332222222211111111000000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhcc-CCcEEE-eceEEEEEcCCC--eEEcCCCcE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWV-KDKIVSFDPENN--RVRTQAGSE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~-~~~v~~id~~~~--~V~~~~g~~  621 (706)
                      .+. ++     ...++.............+.. .....++...+.+.+. .|+++. +.+|+.|+.+..  .|.+.+| +
T Consensus       102 ~~~-~~-----~~~~~~~Gi~~~~~~~g~~~~-~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~  173 (417)
T 3v76_A          102 RPQ-DF-----VALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T  173 (417)
T ss_dssp             CHH-HH-----HHHHHHTTCCEEECSTTEEEE-SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred             CHH-HH-----HHHHHHcCCCcEEeeCCEEee-CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence            000 00     000000000000000000000 0011122222222222 589985 468998876554  4666777 8


Q ss_pred             EeeCEEEEecCccc
Q psy8791         622 ISYEYMIVASGIQM  635 (706)
Q Consensus       622 i~yd~lViAtGs~~  635 (706)
                      +.+|+||+|||+.+
T Consensus       174 i~ad~VIlAtG~~S  187 (417)
T 3v76_A          174 VDAASLVVASGGKS  187 (417)
T ss_dssp             EEESEEEECCCCSS
T ss_pred             EEeeEEEECCCCcc
Confidence            99999999999876

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.58  E-value=5.9e-08  Score=95.57  Aligned_cols=127  Identities=20%  Similarity=0.196  Sum_probs=75.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.+||+|||||++|+.+|..|++.  +.+|+|||++....          |. .    +.|.-.-+...     ...   
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~--g~~v~lie~~~~~~----------G~-~----~~~~~~~~~~~-----~~~---   56 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK--GVRVGLLTQSLDAV----------MM-P----FLPPKPPFPPG-----SLL---   56 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGT----------TC-C----SSCCCSCCCTT-----CHH---
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCCcC----------Cc-c----cCccccccchh-----hHH---
Confidence            457999999999999999999998  88999999864321          10 0    00000000000     000   


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc-cC-CcEEEeceEEEEEcCCC---eEEcCCCc
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PS-GATWVKDKIVSFDPENN---RVRTQAGS  620 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-gv~~~~~~v~~id~~~~---~V~~~~g~  620 (706)
                                 +. ++.             ..+. ....+...+.+.+ +. |+++++++|++++.+..   .|.+.+|+
T Consensus        57 -----------~~-~~d-------------~~g~-~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~  110 (232)
T 2cul_A           57 -----------ER-AYD-------------PKDE-RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGP  110 (232)
T ss_dssp             -----------HH-HCC-------------TTCC-CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSC
T ss_pred             -----------hh-hcc-------------CCCC-CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCC
Confidence                       00 000             0000 0111122222223 23 89998889999987554   35677888


Q ss_pred             EEeeCEEEEecCcccCccCCCCc
Q psy8791         621 EISYEYMIVASGIQMYYDRVKGG  643 (706)
Q Consensus       621 ~i~yd~lViAtGs~~~~p~i~G~  643 (706)
                      ++.+|+||+|+|..+.....+|.
T Consensus       111 ~i~a~~VV~A~G~~s~~~~~~G~  133 (232)
T 2cul_A          111 PARGEKVVLAVGSFLGARLFLGG  133 (232)
T ss_dssp             CEECSEEEECCTTCSSCEEEETT
T ss_pred             EEECCEEEECCCCChhhceecCC
Confidence            99999999999997665444554

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.57  E-value=8.3e-07  Score=94.32  Aligned_cols=75  Identities=8%  Similarity=-0.170  Sum_probs=56.3

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      .++.+....+.+..+...+.+.+++.|++++.+++|++++.+++.+..+.+++| ++.+|.||+|+|.........
T Consensus       137 ~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~  211 (382)
T 1y56_B          137 ASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAM  211 (382)
T ss_dssp             EEEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHH
T ss_pred             EEEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHH
Confidence            344444444456778888999999999999999999999876665552334455 799999999999987655443

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.55  E-value=1.3e-06  Score=93.60  Aligned_cols=78  Identities=5%  Similarity=-0.126  Sum_probs=58.8

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      -.++.+....+.+..+.+.+.+.+++.|++++.+++|+++..+++.+..+.+++| ++.+|.||+|+|...+......+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g  238 (405)
T 2gag_B          161 GATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAG  238 (405)
T ss_dssp             EEEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHT
T ss_pred             eEEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcC
Confidence            4455555555556788888999999999999999999999866554444444456 79999999999998865554443

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.53  E-value=1.4e-06  Score=92.84  Aligned_cols=79  Identities=9%  Similarity=0.002  Sum_probs=60.3

Q ss_pred             cEEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcC
Q psy8791         251 AKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       251 ~~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      ....++.+....+.+..+...+.+.+++.|++++.+++|++++.+++.+.+. +++| ++.+|.||+|+|.+++..+...
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~-~~~g-~~~a~~vV~A~G~~~~~l~~~~  212 (389)
T 2gf3_A          135 NYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIE-TANG-SYTADKLIVSMGAWNSKLLSKL  212 (389)
T ss_dssp             TEEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEE-ETTE-EEEEEEEEECCGGGHHHHGGGG
T ss_pred             CceEEEeCCCcEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEE-eCCC-EEEeCEEEEecCccHHHHhhhh
Confidence            4566666666555567888899999999999999999999998755545443 3344 7999999999999887665543


Q ss_pred             C
Q psy8791         331 R  331 (706)
Q Consensus       331 ~  331 (706)
                      +
T Consensus       213 g  213 (389)
T 2gf3_A          213 N  213 (389)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.51  E-value=1.4e-06  Score=93.88  Aligned_cols=57  Identities=12%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.+++.|++++++++|++|..+++.+ + . .+|+++++|.||+|+|....
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~-~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-T-RDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-E-TTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-E-eCCcEEEeCEEEECCCHHHH
Confidence            46788999999999999999999999999877776 3 3 36789999999999997654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.50  E-value=5.1e-07  Score=99.68  Aligned_cols=61  Identities=8%  Similarity=0.070  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE  326 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~  326 (706)
                      +.+.+.+.+.+++.|++++++++|+++..+++.+..+.+++|+++.+|.||+|+|..+.+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~~  280 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDT  280 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhH
Confidence            5677888888999999999999999998766656555566888999999999999999743

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.49  E-value=1.4e-07  Score=104.96  Aligned_cols=50  Identities=14%  Similarity=0.093  Sum_probs=40.5

Q ss_pred             CCcEEEeceEEEEEcCCC---eEEcCCCcEEeeCEEEEecCcccCccCCCCch
Q psy8791         595 SGATWVKDKIVSFDPENN---RVRTQAGSEISYEYMIVASGIQMYYDRVKGGT  644 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~---~V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~  644 (706)
                      .|+++++++|+++..++.   .|.+.+|.++.+|.||+|||+.+..+.++|..
T Consensus       138 ~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~G~~  190 (651)
T 3ces_A          138 PNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLD  190 (651)
T ss_dssp             TTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEECC--
T ss_pred             CCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCccccCcc
Confidence            489999999999976554   35677888899999999999998877777764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.48  E-value=4.6e-07  Score=98.51  Aligned_cols=59  Identities=14%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.||+++++++|+++..+++.+..+.+++|+++.+|.||+|+|..+.
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~  192 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSV  192 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCcC
Confidence            56778888889999999999999999985555544444557777999999999999884

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.48  E-value=1.9e-07  Score=99.33  Aligned_cols=105  Identities=19%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc-cc----------c------cc-C------------c
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM-FT----------L------IG-G------------G   79 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~-~~----------~------~~-~------------~   79 (706)
                      .++|+|||||++|+++|..|++.  |.+|+|||+++.....+. ..          .      +. .            +
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~--G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g   88 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQN--GWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN   88 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCC
Confidence            57999999999999999999998  899999999875422110 00          0      00 0            0


Q ss_pred             c----cc---Cccc-------cccc-ccccCCCcEEEE-ceeEEEEcCCCEEEeCCCeEEEecEEEEccccccc
Q psy8791          80 M----KK---LSDS-------RRPM-KSVLPSGATWVK-DKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus        80 ~----~~---~~~~-------~~~~-~~~~~~~v~~i~-~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                      .    ..   ....       ...+ +.+...++++.. .+|++++.+. .|++.+|.++.+|+||.|+|....
T Consensus        89 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           89 KSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             ceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence            0    00   0000       0001 111125788876 5788888755 888888888999999999998654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.47  E-value=3.2e-07  Score=102.78  Aligned_cols=59  Identities=15%  Similarity=0.213  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEEEEeCCCc--eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAVFKSEDKT--ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~~~~~~~g--~~i~~D~vI~a~G~~~~  324 (706)
                      ..+...+.+.+++.||+++.+++|+++..+ ++.+.+...++|  .++.+|+||.|+|..+.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~  189 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGP  189 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcch
Confidence            456677778888899999999999999864 332322222145  68999999999999764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.46  E-value=7.1e-07  Score=94.70  Aligned_cols=75  Identities=8%  Similarity=-0.122  Sum_probs=56.5

Q ss_pred             EEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         255 YCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      ++.+....+.+..+...+.+.+++.|++++.+++|+++..+++.+.+ .+++| ++.+|.||+|+|......+...+
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V-~t~~g-~i~a~~VV~A~G~~s~~l~~~~g  217 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEV-RCDAG-SYRAAVLVNAAGAWCDAIAGLAG  217 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEE-ECSSE-EEEESEEEECCGGGHHHHHHHHT
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEE-EeCCC-EEEcCEEEECCChhHHHHHHHhC
Confidence            33444333445778888999999999999999999999876665444 45455 89999999999998876655433

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.45  E-value=1.8e-07  Score=104.20  Aligned_cols=113  Identities=17%  Similarity=0.188  Sum_probs=74.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC-cccC---ccccc-----------ccCccc------------
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD-HYYQ---PMFTL-----------IGGGMK------------   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~-~~~~---p~~~~-----------~~~~~~------------   81 (706)
                      ..+||||||||+||++||..|++.  |.+|+|||+++. ....   |....           ..++..            
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~--G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~  104 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM--GQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFR  104 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC--CCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchh
Confidence            357999999999999999999998  899999999842 1110   11000           000000            


Q ss_pred             ------cCc-----------cccccccc-ccC-CCcEEEEceeEEEEcCCC---EEEeCCCeEEEecEEEEccccccccC
Q psy8791          82 ------KLS-----------DSRRPMKS-VLP-SGATWVKDKIVSFDPENN---RVRTQAGSEISYEYMIVASGIQMYYD  139 (706)
Q Consensus        82 ------~~~-----------~~~~~~~~-~~~-~~v~~i~~~v~~id~~~~---~v~~~~g~~~~yd~lviAtG~~~~~~  139 (706)
                            .+.           .+...+.+ +.. .++++..++|+.+..+++   .|.+.+|.++.+|.||+|||+.+..+
T Consensus       105 ~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~  184 (651)
T 3ces_A          105 ILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGK  184 (651)
T ss_dssp             EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCE
T ss_pred             hhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCc
Confidence                  000           00001111 223 489998899999976555   35677888899999999999877666


Q ss_pred             CCCC
Q psy8791         140 RVKG  143 (706)
Q Consensus       140 ~~~g  143 (706)
                      .++|
T Consensus       185 ~i~G  188 (651)
T 3ces_A          185 IHIG  188 (651)
T ss_dssp             EECC
T ss_pred             cccC
Confidence            6666

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.44  E-value=2.4e-06  Score=90.77  Aligned_cols=74  Identities=5%  Similarity=-0.046  Sum_probs=55.7

Q ss_pred             EeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         256 CTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      ..+....+.+..+.+.+.+.+++.|++++.+++|.+++.+++.+.+ .+++| ++.+|.||+|+|......+...+
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v-~~~~g-~~~a~~vV~A~G~~s~~l~~~~~  227 (382)
T 1ryi_A          154 FIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFI-KTPSG-DVWANHVVVASGVWSGMFFKQLG  227 (382)
T ss_dssp             EETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEE-EETTE-EEEEEEEEECCGGGTHHHHHHTT
T ss_pred             EeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEE-EcCCc-eEEcCEEEECCChhHHHHHHhcC
Confidence            3333334445778888999999999999999999999876655543 34455 89999999999998776655544

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.44  E-value=1.9e-07  Score=103.56  Aligned_cols=113  Identities=23%  Similarity=0.246  Sum_probs=74.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC-ccc---Ccccc---------cc--cCcc---------c---
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD-HYY---QPMFT---------LI--GGGM---------K---   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~-~~~---~p~~~---------~~--~~~~---------~---   81 (706)
                      ..+||||||||+||++||..|++.  |.+|+|||+++. ...   .|...         .+  .++.         .   
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~--G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~  103 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARM--GAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFK  103 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhccccee
Confidence            357999999999999999999998  899999999842 111   01100         00  0000         0   


Q ss_pred             ------cC-----------ccccccccc-ccC-CCcEEEEceeEEEEcCCCE---EEeCCCeEEEecEEEEccccccccC
Q psy8791          82 ------KL-----------SDSRRPMKS-VLP-SGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGIQMYYD  139 (706)
Q Consensus        82 ------~~-----------~~~~~~~~~-~~~-~~v~~i~~~v~~id~~~~~---v~~~~g~~~~yd~lviAtG~~~~~~  139 (706)
                            .+           ..+...+.+ +.. .+++++.++|++|..+.+.   |.+.+|.++.+|.+|+|||..+..+
T Consensus       104 ~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~  183 (637)
T 2zxi_A          104 MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGV  183 (637)
T ss_dssp             EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCE
T ss_pred             ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCc
Confidence                  00           000011111 223 4899988999998866553   6677888899999999999877666


Q ss_pred             CCCC
Q psy8791         140 RVKG  143 (706)
Q Consensus       140 ~~~g  143 (706)
                      .++|
T Consensus       184 ~~~G  187 (637)
T 2zxi_A          184 IYIG  187 (637)
T ss_dssp             EEET
T ss_pred             eecc
Confidence            6666

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.43  E-value=1.4e-06  Score=99.84  Aligned_cols=73  Identities=7%  Similarity=-0.008  Sum_probs=55.4

Q ss_pred             eCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcC
Q psy8791         257 TGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      .+....+.+..+...+.+.+++.|++++++++|+++..+++.+.+ .+.+|.++.+|.||+|+|.....+....
T Consensus       408 ~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V-~t~~G~~i~Ad~VVlAtG~~s~~l~~~~  480 (676)
T 3ps9_A          408 YPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLL-NFAGDQQATHSVVVLANGHQISRFSQTS  480 (676)
T ss_dssp             ETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEE-EETTSCEEEESEEEECCGGGGGCSTTTT
T ss_pred             ecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEE-EECCCCEEECCEEEECCCcchhcccccc
Confidence            333333345778888999999999999999999999876666644 3446778999999999999876544433

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.42  E-value=4.9e-07  Score=100.14  Aligned_cols=59  Identities=10%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE--EEeCCCc--eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV--FKSEDKT--ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~--~~~~~~g--~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.||+++.+++|+++..+++.+.  .....+|  .++.+|+||.|+|....
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence            45667777888889999999999999987666543  2223356  48999999999999764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.42  E-value=3.5e-06  Score=90.87  Aligned_cols=59  Identities=10%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.+++.|++++++++|++|..+++.++.+.+ +|+++.+|.||+|+|....
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence            4678889999999999999999999999876666654444 4789999999999987655

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.41  E-value=1.9e-06  Score=98.90  Aligned_cols=67  Identities=7%  Similarity=-0.026  Sum_probs=51.9

Q ss_pred             CCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCce-EEeecEEEECCCCCchhhhhcC
Q psy8791         263 FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTE-RLPYAIMHVTPPMGPVPELATS  330 (706)
Q Consensus       263 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~-~i~~D~vI~a~G~~~~~~~~~~  330 (706)
                      +.+..+...+.+.+++.|++++.+++|+++..+++.+.+. +++|+ ++.+|.||+|+|.....+....
T Consensus       409 v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~-t~~G~~~i~Ad~VVlAtG~~s~~l~~~~  476 (689)
T 3pvc_A          409 LCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLT-FGQSQAAKHHATVILATGHRLPEWEQTH  476 (689)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEE-EC-CCCCEEESEEEECCGGGTTCSTTTT
T ss_pred             ECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEE-eCCCcEEEECCEEEECCCcchhcccccc
Confidence            3457788889999999999999999999998766555443 44666 8999999999999876554433

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.40  E-value=1.7e-07  Score=102.10  Aligned_cols=78  Identities=12%  Similarity=-0.010  Sum_probs=58.4

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeC---------------CCCEEEEEeCCCceEE--eecEE
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDL---------------ANKEAVFKSEDKTERL--PYAIM  315 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---------------~~~~v~~~~~~~g~~i--~~D~v  315 (706)
                      ..++.+....+.+..+...+.+.+++.|++++.+++|+++..               +++.+..+.+++| ++  .+|.|
T Consensus       168 ~~~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~V  246 (448)
T 3axb_A          168 GAVLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKL  246 (448)
T ss_dssp             EEEEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEE
T ss_pred             EEEEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEE
Confidence            344555444455668889999999999999999999999976               4555544445566 68  99999


Q ss_pred             EECCCCCchhhhhcCC
Q psy8791         316 HVTPPMGPVPELATSR  331 (706)
Q Consensus       316 I~a~G~~~~~~~~~~~  331 (706)
                      |+|+|.....++...+
T Consensus       247 V~AtG~~s~~l~~~~g  262 (448)
T 3axb_A          247 VVAAGVWSNRLLNPLG  262 (448)
T ss_dssp             EECCGGGHHHHHGGGT
T ss_pred             EECCCcCHHHHHHHcC
Confidence            9999998776665544

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.39  E-value=2.9e-07  Score=102.04  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=41.2

Q ss_pred             CCcEEEeceEEEEEcCCCe---EEcCCCcEEeeCEEEEecCcccCccCCCCch
Q psy8791         595 SGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGIQMYYDRVKGGT  644 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~~---V~~~~g~~i~yd~lViAtGs~~~~p~i~G~~  644 (706)
                      .|+++++++|++|..+...   |.+.+|.++.+|.||+|||+.+..+.++|..
T Consensus       137 ~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~~G~~  189 (637)
T 2zxi_A          137 ENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDK  189 (637)
T ss_dssp             TTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEEEETTE
T ss_pred             CCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCceeccce
Confidence            4899999999999766553   6778888999999999999988877776643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.38  E-value=3.5e-07  Score=97.24  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +++||+|||||++|+++|..|++.  +.+|+|||+++..
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~--G~~v~viE~~~~~   46 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQN--GWDVRLHEKSSEL   46 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCC
Confidence            457999999999999999999998  8899999987654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.37  E-value=3.9e-06  Score=88.71  Aligned_cols=73  Identities=7%  Similarity=-0.079  Sum_probs=53.2

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhh
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~  328 (706)
                      .++.+....+.+..+...+.+.+++.|++++.+++|++++.+++.+.+. +++| ++.+|.||+|+|.....++.
T Consensus       137 ~~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~-~~~g-~~~a~~vV~a~G~~s~~l~~  209 (372)
T 2uzz_A          137 GLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIE-TADG-EYQAKKAIVCAGTWVKDLLP  209 (372)
T ss_dssp             EEEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEE-ESSC-EEEEEEEEECCGGGGGGTST
T ss_pred             EEEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEE-ECCC-eEEcCEEEEcCCccHHhhcc
Confidence            3344433333356788888899999999999999999998655545443 3455 59999999999988765554

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.32  E-value=8.2e-07  Score=94.87  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++||+|||||++|++||..|+++  |.+|+|||+++.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~--G~~V~vlEk~~~   38 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKK   38 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhC--CCCEEEEeCCCC
Confidence            47999999999999999999998  899999999875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.31  E-value=7.3e-07  Score=95.72  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             cccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          19 FSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        19 ~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+.+..+...+++|+|||||++|+++|..|+++  |++|+|||+.+.
T Consensus        12 ~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~E~~~~   57 (407)
T 3rp8_A           12 HSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQS--GIDCDVYEAVKE   57 (407)
T ss_dssp             -----------CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSC
T ss_pred             cCCCCcccCCCCCEEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCC
Confidence            3334444555678999999999999999999999  899999999875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.30  E-value=4.6e-07  Score=100.84  Aligned_cols=109  Identities=19%  Similarity=0.252  Sum_probs=71.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC-ccc---Cccccc-----------ccCccc------------
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD-HYY---QPMFTL-----------IGGGMK------------   81 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~-~~~---~p~~~~-----------~~~~~~------------   81 (706)
                      ..+||+|||||+||++||..|++.  |.+|+|||+++. ...   .|....           ..++..            
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~--G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~   97 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARG--GLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFR   97 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHC--CCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchh
Confidence            457999999999999999999999  899999999842 111   011000           000000            


Q ss_pred             ------cCc-----------cccccccc-ccC-CCcEEEEceeEEEEcCCCE---EEeCCCeEEEecEEEEccccccccC
Q psy8791          82 ------KLS-----------DSRRPMKS-VLP-SGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGIQMYYD  139 (706)
Q Consensus        82 ------~~~-----------~~~~~~~~-~~~-~~v~~i~~~v~~id~~~~~---v~~~~g~~~~yd~lviAtG~~~~~~  139 (706)
                            .+.           .+...+.+ +.. .+++++.++|+.+..+...   |.+.+|.++.+|.+|+|||+.+...
T Consensus        98 ~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~  177 (641)
T 3cp8_A           98 MLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGL  177 (641)
T ss_dssp             EECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCE
T ss_pred             hcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCcc
Confidence                  000           00001111 223 4899988999998766554   5677888899999999999875543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.30  E-value=1.2e-06  Score=97.42  Aligned_cols=38  Identities=29%  Similarity=0.498  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      .+++|+|||||+|||+||..|++.  |++|+|+|++++..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~G   40 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVG   40 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSSSB
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCC
Confidence            357999999999999999999998  89999999998743

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.30  E-value=5.4e-07  Score=99.24  Aligned_cols=114  Identities=18%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc---c-------cccC----ccc--------cCcc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF---T-------LIGG----GMK--------KLSD   85 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~---~-------~~~~----~~~--------~~~~   85 (706)
                      ...++|+|||||++||++|..|++.  |.+|+|||+++........   +       ....    +..        ....
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~--G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  167 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL--GARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQ  167 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHH
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC--CCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHH
Confidence            3467999999999999999999998  8999999998753211000   0       0000    000        0001


Q ss_pred             ccccccc-ccCCCcEEEE-ceeEEEEcCC-----CEEEe--C-CC--eEEEecEEEEccccccccCCCCC
Q psy8791          86 SRRPMKS-VLPSGATWVK-DKIVSFDPEN-----NRVRT--Q-AG--SEISYEYMIVASGIQMYYDRVKG  143 (706)
Q Consensus        86 ~~~~~~~-~~~~~v~~i~-~~v~~id~~~-----~~v~~--~-~g--~~~~yd~lviAtG~~~~~~~~~g  143 (706)
                      +...+.+ +...++++.. .+|+++..+.     -.|.+  . +|  .++.+|+||+|+|..+......+
T Consensus       168 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~  237 (497)
T 2bry_A          168 LQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTI  237 (497)
T ss_dssp             HHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEE
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccc
Confidence            1111111 1125788876 5888988631     25655  3 55  46899999999998775544333

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.30  E-value=5.2e-06  Score=88.64  Aligned_cols=75  Identities=8%  Similarity=-0.000  Sum_probs=54.1

Q ss_pred             EEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         255 YCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      ++.+....+.+..+...+.+.+++.|++++.+++|+++..+++.+.+. +++ .++.+|.||.|+|......+...+
T Consensus       142 ~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~-t~~-g~i~a~~VV~A~G~~s~~l~~~~g  216 (397)
T 2oln_A          142 FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVT-TDR-GTYRAGKVVLACGPYTNDLLEPLG  216 (397)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEE-ESS-CEEEEEEEEECCGGGHHHHHGGGT
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEE-ECC-CEEEcCEEEEcCCcChHHHhhhcC
Confidence            333333333345677788888899999999999999998665556543 334 479999999999998766655544

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.30  E-value=1.2e-06  Score=89.09  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCccc-----c-------------cccC-----ccc----c
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMF-----T-------------LIGG-----GMK----K   82 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~-----~-------------~~~~-----~~~----~   82 (706)
                      .+||+|||||++|+++|..|+++ ++.+|+|||+++........     .             ....     +.+    .
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~-~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  117 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  117 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             ccCEEEECccHHHHHHHHHHHHc-CCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecC
Confidence            46999999999999999999983 37899999998753211000     0             0000     000    0


Q ss_pred             Ccccccc-cccccC-CCcEEEE-ceeEEEEcCCCEE---EeC---------CC-----eEEEecEEEEcccccccc
Q psy8791          83 LSDSRRP-MKSVLP-SGATWVK-DKIVSFDPENNRV---RTQ---------AG-----SEISYEYMIVASGIQMYY  138 (706)
Q Consensus        83 ~~~~~~~-~~~~~~-~~v~~i~-~~v~~id~~~~~v---~~~---------~g-----~~~~yd~lviAtG~~~~~  138 (706)
                      ...+... .+.+.. .++++.. .+|++++.+.+.+   .+.         ++     .++.+|.+|+|+|..+..
T Consensus       118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~  193 (284)
T 1rp0_A          118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF  193 (284)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence            0001001 122333 5899877 5888988665533   331         22     578999999999987654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.29  E-value=9.7e-06  Score=95.17  Aligned_cols=77  Identities=9%  Similarity=-0.055  Sum_probs=58.0

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      .+..+....+.+..+...+.+.+++.|++++.+++|+++..+++.+..+.+++| ++.||.||+|+|.....+....+
T Consensus       139 g~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g  215 (830)
T 1pj5_A          139 GLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIG  215 (830)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTT
T ss_pred             EEEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhC
Confidence            344444444445688889999999999999999999999876565544445555 79999999999998876554443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.27  E-value=1e-06  Score=94.29  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=67.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcc---c-c-------------cc--------------cC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM---F-T-------------LI--------------GG   78 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~---~-~-------------~~--------------~~   78 (706)
                      +++|+|||||++|+++|..|+++  |++|+|||+++.......   + +             .+              ..
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   83 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQ--GHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD   83 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence            46999999999999999999998  899999999865311100   0 0             00              00


Q ss_pred             c----cccCcc-------cccc-------cc-cccCC-CcEEEE-ceeEEEEcCCC----EEEeCCCeEEEecEEEEccc
Q psy8791          79 G----MKKLSD-------SRRP-------MK-SVLPS-GATWVK-DKIVSFDPENN----RVRTQAGSEISYEYMIVASG  133 (706)
Q Consensus        79 ~----~~~~~~-------~~~~-------~~-~~~~~-~v~~i~-~~v~~id~~~~----~v~~~~g~~~~yd~lviAtG  133 (706)
                      +    ......       ...+       +. .+.+. ++++.. .+|++++.+..    .|++.+|+++.+|+||.|+|
T Consensus        84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG  163 (399)
T 2x3n_A           84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG  163 (399)
T ss_dssp             TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred             CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence            0    000000       0000       00 11123 788775 68888876544    57778888899999999999


Q ss_pred             cccc
Q psy8791         134 IQMY  137 (706)
Q Consensus       134 ~~~~  137 (706)
                      ....
T Consensus       164 ~~s~  167 (399)
T 2x3n_A          164 IASY  167 (399)
T ss_dssp             TTCH
T ss_pred             CChH
Confidence            7653

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.27  E-value=2.3e-06  Score=91.45  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=66.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-c-c--c-c-------cccCcc----ccCcc--cccc-
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-P-M--F-T-------LIGGGM----KKLSD--SRRP-   89 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p-~--~-~-------~~~~~~----~~~~~--~~~~-   89 (706)
                      ..++|+|||||++|+++|..|++.  |++|+|||+.+..... . .  + +       ......    .....  +... 
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   81 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL   81 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecC
Confidence            357999999999999999999998  8999999998752111 0 0  0 0       000000    00000  0000 


Q ss_pred             -------------------ccccc-C--CCcEEEE-ceeEEEEcCCC--EEEeCCCeEEEecEEEEccccccc
Q psy8791          90 -------------------MKSVL-P--SGATWVK-DKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus        90 -------------------~~~~~-~--~~v~~i~-~~v~~id~~~~--~v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                                         +.+.+ .  .++++.. .+|++++.+..  +|++.+|.++.+|+||.|+|....
T Consensus        82 ~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           82 TGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             TCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence                               00000 0  2455554 57888876544  567788888999999999997643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.23  E-value=2.7e-06  Score=90.97  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||++|+++|..|++.  |.+|+|||+++.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQN--GIDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT--TCEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            457999999999999999999998  899999999864

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.23  E-value=2.2e-06  Score=95.69  Aligned_cols=58  Identities=7%  Similarity=0.029  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHhC-CceEEcCCceEEEeCC-CCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGR-GVDVHKGKALVEIDLA-NKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~-~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++. ||+++.+ +|+++..+ ++.+..+.+++|+++.+|+||.|+|..+.
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            56788888888888 9999999 99999753 33333334457888999999999998764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.23  E-value=2.9e-06  Score=88.71  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---hcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTS---KLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~---~~~~~~Vtlie~~~~   66 (706)
                      +||+|||||++|+++|+.|++   .  |++|+|||+++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~--G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG--PLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C--CEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC--CceEEEEECCCC
Confidence            589999999999999999999   6  899999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.21  E-value=9.5e-07  Score=98.33  Aligned_cols=49  Identities=16%  Similarity=0.233  Sum_probs=38.6

Q ss_pred             CCcEEEeceEEEEEcCCCe---EEcCCCcEEeeCEEEEecCcccCccCCCCc
Q psy8791         595 SGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGIQMYYDRVKGG  643 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~~~---V~~~~g~~i~yd~lViAtGs~~~~p~i~G~  643 (706)
                      .|+++++++|+.+..+...   |.+.+|+++.+|.||+|||+.+..+.++|.
T Consensus       131 ~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i~~G~  182 (641)
T 3cp8_A          131 PNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGM  182 (641)
T ss_dssp             TTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEEEETT
T ss_pred             CCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccceeee
Confidence            3899999999998765554   667788899999999999998765544443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.20  E-value=1.2e-06  Score=94.32  Aligned_cols=35  Identities=31%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++||+|||||++|+++|..|+++  |.+|+|||+++.
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~--G~~V~v~E~~~~   39 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKS--GFKVKIVEKQKF   39 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCC
Confidence            47999999999999999999998  899999999863

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.19  E-value=4.6e-07  Score=98.49  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~--G~~V~llEk~~~~   61 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKL   61 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence            36999999999999999999987  7899999987653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.19  E-value=1.3e-05  Score=89.57  Aligned_cols=70  Identities=9%  Similarity=-0.122  Sum_probs=52.5

Q ss_pred             CCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCC---C--ceEEeecEEEECCCCCchhhhhcCC
Q psy8791         262 LFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED---K--TERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~---~--g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      ...+..+...+.+.+++.|++++.+++|+++..+++.+..+...   +  +.++.+|.||.|+|.+........+
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g  240 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDR  240 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTT
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcC
Confidence            34457788888888999999999999999998766654322221   2  3579999999999998876655443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.12  E-value=3.1e-06  Score=90.52  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ++||+|||||++|+++|..|++.  +.+|+|||+++..
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~--G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQ--GHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCC
Confidence            57999999999999999999998  8999999987653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.11  E-value=1.8e-06  Score=92.60  Aligned_cols=40  Identities=20%  Similarity=0.293  Sum_probs=33.0

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..++.+||+|||||++|+++|..|++.  +.+|+|+|+.+..
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~E~~~~~   58 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQS--GIDCDVYEAVKEI   58 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSCC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            344568999999999999999999998  8999999997654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.10  E-value=3.7e-06  Score=88.57  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .++||+|||||.+|+++|..|+++  +.+|+|||+++.
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~--G~~V~vlE~~~~   38 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEG   38 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCC
Confidence            457999999999999999999997  889999999753

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.09  E-value=2.6e-06  Score=91.76  Aligned_cols=36  Identities=28%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||++|+++|..|++.  +.+|+|+|+++..
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~--G~~V~v~E~~~~~   40 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKS--GFKVKIVEKQKFP   40 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            37999999999999999999987  8899999997643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.08  E-value=4.8e-06  Score=89.18  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ++|+|||||++||++|..|+++  |++|+|+|+.+..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~--G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH--GIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEecCCCC
Confidence            6899999999999999999999  9999999997653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.08  E-value=2.7e-06  Score=95.08  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+++|+|||||++|+++|..|+++  |++|+|||+.+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~--G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG--GVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT--TCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEcCCCC
Confidence            357999999999999999999999  999999999765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.07  E-value=2e-06  Score=94.70  Aligned_cols=37  Identities=24%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+++..
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~--G~~V~liEk~~~~  127 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALL--GARVVLVEKRIKF  127 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC--CCeEEEEEecccc
Confidence            467999999999999999999998  7899999987653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.07  E-value=2.7e-06  Score=88.96  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             cccccccCcchhHHHHHHHHHh-hcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTS-RLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~-~~~~~~i~vid~~~~  503 (706)
                      |+||+|||||++|+++|..|++ ...+.+|+|+|+++.
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            5799999999999999999998 112789999999764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.05  E-value=1.2e-05  Score=88.37  Aligned_cols=58  Identities=10%  Similarity=0.160  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc---eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT---ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g---~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.|++++.++++++++.+++.+++.. .++   .++.+|+||-|.|....
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEV-EGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEE-ECSSCEEEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEE-EcCCCcEEEEeCEEEEccCcccH
Confidence            45667777888888999999999999987665555432 233   27999999999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.05  E-value=3.3e-06  Score=93.19  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=31.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||||||||++|+++|..|++.  +.+|+|||+.+.
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~--G~kV~VlEr~~~  141 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKE  141 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHT--TCCCEEECSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCeEEEEEccCc
Confidence            47999999999999999999997  889999998764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.04  E-value=1.3e-05  Score=88.22  Aligned_cols=58  Identities=10%  Similarity=0.129  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc---eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT---ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g---~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.|++++.+++|++++.+++.+++.. .++   .++.+|+||.|.|....
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~~~g~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEV-RGPEGKHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEE-EETTEEEEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEE-EcCCCCEEEEeCEEEECCCcchH
Confidence            45667777888888999999999999987666555432 233   37999999999999864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.04  E-value=3e-06  Score=85.03  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      +.+|+|||||+|||+||..|+++  |++|+|||+++..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence            46899999999999999999999  9999999998853

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.04  E-value=2.9e-06  Score=91.94  Aligned_cols=37  Identities=27%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCC-cEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~~  503 (706)
                      +..+||||||||.+|+++|..|+++  +. +|+|+|+++.
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~~--G~~~V~vlE~~~~   41 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLARR--GYTNVTVLDPYPV   41 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSCS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHc--CCCcEEEEeCCCC
Confidence            3457999999999999999999998  77 9999999764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.04  E-value=9.9e-06  Score=86.52  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=33.7

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +..+||+|||||++|+++|..|++.  +.+|+|+|+++..
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~   61 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQN--GIDVSVYERDNDR   61 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTT--TCEEEEEECSSST
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCc
Confidence            3457999999999999999999997  8999999997654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.02  E-value=3.2e-05  Score=86.72  Aligned_cols=59  Identities=15%  Similarity=0.068  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEEE-EEeCC-----C---------ceEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEAV-FKSED-----K---------TERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v~-~~~~~-----~---------g~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.||+++.++++.++..++ +.+. +...+     +         |.++.+|+||.|.|..+.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            3566677778888899999999999997543 3343 22221     2         368999999999999886

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.02  E-value=6.2e-06  Score=88.10  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|+|+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence            357999999999999999999998  899999998765

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.01  E-value=5.1e-06  Score=88.59  Aligned_cols=35  Identities=14%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|+|||||++|+++|..|++.  |++|+|||+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            46899999999999999999999  899999999873

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.99  E-value=1.2e-05  Score=89.90  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+|+.+||||||||+||+++|..|++.  +.+|+|||+.+..
T Consensus        19 ~~M~~~DVvIVGgG~AGl~aA~~Lar~--G~~V~LiEr~~~~   58 (591)
T 3i3l_A           19 SHMTRSKVAIIGGGPAGSVAGLTLHKL--GHDVTIYERSAFP   58 (591)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCSS
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHcC--CCCEEEEcCCCCC
Confidence            344557999999999999999999998  8899999997643

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.98  E-value=1.2e-05  Score=89.60  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhc-CCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKL-GKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~-~~~~Vtlie~~~~   66 (706)
                      .++|||||||++|+++|..|++.. .|.+|+|||+.+.
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            579999999999999999999932 2899999999653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.98  E-value=6.6e-06  Score=91.01  Aligned_cols=37  Identities=30%  Similarity=0.488  Sum_probs=33.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+++..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~--G~~V~liE~~~~~   42 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMR--GHRVLLLEREAFP   42 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC--CCCEEEEccCCCC
Confidence            357999999999999999999987  8899999997643

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.98  E-value=5.9e-06  Score=89.92  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++||+|||||+||+++|..|++.  |++|+|||+.+.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~--G~~V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRR--GLKILLVDSKPW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSS--SCCEEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence            47999999999999999999998  899999999874

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.97  E-value=8.7e-06  Score=90.66  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||++||++|..|+++  |.+|+|||+++.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~--G~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ--GVRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            357999999999999999999999  899999999864

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.94  E-value=2.2e-05  Score=86.79  Aligned_cols=58  Identities=5%  Similarity=-0.119  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEEEEeC-CCc--eEEeec-EEEECCCCCch
Q psy8791         267 FYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAVFKSE-DKT--ERLPYA-IMHVTPPMGPV  324 (706)
Q Consensus       267 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~~~~~-~~g--~~i~~D-~vI~a~G~~~~  324 (706)
                      .+.+.+.+.+++.||+++++++++++..+ +++++.+.. +++  .++.+| .||+|+|-...
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~  265 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAY  265 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhh
Confidence            78888889999999999999999999865 444432221 133  268997 99999987664

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.94  E-value=1.1e-05  Score=90.61  Aligned_cols=35  Identities=31%  Similarity=0.443  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+||||||||+|||+||..|+++  |.+|+|||+.+.
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~--G~~V~vlEk~~~  160 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPV  160 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            57999999999999999999998  899999999875

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.93  E-value=0.00017  Score=77.84  Aligned_cols=58  Identities=10%  Similarity=-0.022  Sum_probs=47.9

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeC-CCCEEEEEeCCCceEEeecEEEECCCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDL-ANKEAVFKSEDKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~~v~~~~~~~g~~i~~D~vI~a~G~~  322 (706)
                      ...+.+.+.+.+++.|++++++++|++|.. ++++++.+.+.+|+++.||.||.+++..
T Consensus       255 ~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          255 LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            367889999999999999999999999986 5555666666678899999999999987

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.92  E-value=9.9e-06  Score=90.74  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+||||||||+|||+||..|++.  |.+|+|||+.+.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~--G~~V~vlEk~~~  155 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPF  155 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            456999999999999999999999  899999999875

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.89  E-value=1.3e-05  Score=85.02  Aligned_cols=38  Identities=18%  Similarity=0.432  Sum_probs=33.1

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +...++||+|||||.+|+++|..|+++  +.+|+|||+++
T Consensus        13 ~~~~~~dvvIIGgG~~Gl~~A~~La~~--G~~V~llE~~~   50 (382)
T 1ryi_A           13 AMKRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   50 (382)
T ss_dssp             -CCSEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCC
Confidence            334568999999999999999999997  88999999865

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.88  E-value=8e-06  Score=86.83  Aligned_cols=38  Identities=21%  Similarity=0.314  Sum_probs=34.5

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |+.|||+|||||+||+++|..|++.  +.+|+|+|+.+..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~--G~~V~v~Er~~~~   39 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKY--GLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            4679999999999999999999998  8999999987654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.87  E-value=5.9e-05  Score=76.37  Aligned_cols=122  Identities=8%  Similarity=0.003  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHHh-CCceEEcCCceEEEeCCCCEEEEEeC-------C--Cc-----eEEeecEEEECCCCCch--h----
Q psy8791         267 FYAEKIHDILIG-RGVDVHKGKALVEIDLANKEAVFKSE-------D--KT-----ERLPYAIMHVTPPMGPV--P----  325 (706)
Q Consensus       267 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~v~~~~~-------~--~g-----~~i~~D~vI~a~G~~~~--~----  325 (706)
                      .+...+.+.+.+ .||+++++++|.++..+++.+..+..       +  +|     .++++|.||.|+|..++  .    
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~  199 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK  199 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence            344455666655 69999999999999865554422211       1  22     67999999999997665  1    


Q ss_pred             hhhcC----CCCCCCCceeeCcc------ccccCCCCCEEEccccCCCC-----CCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         326 ELATS----RLVDQSGYVNVDKA------TLQHVKYSNVFAIGDCSNLP-----TSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       326 ~~~~~----~l~~~~G~i~vd~~------~l~~~~~~~Ifa~GD~~~~~-----~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      .+...    ++...+| +.++..      ..+ +.+|++|++||++...     ..++...+..+|+.+|.+|...+...
T Consensus       200 ~~~~~g~~~~v~~~~g-~~~~~~~~~~v~~~~-~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~~  277 (284)
T 1rp0_A          200 RLKSIGMIDHVPGMKA-LDMNTAEDAIVRLTR-EVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLP  277 (284)
T ss_dssp             HHHHTTSSSCCCCCEE-ECHHHHHHHHHHHCE-EEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HhhhccCCCCcCCcCC-chhhhhhHHHhhccc-cccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhhh
Confidence            12122    2223333 333310      112 4679999999987421     11245578899999999999988643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.87  E-value=2.1e-05  Score=86.56  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=34.1

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +..++||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~--G~~v~vlE~~~~~   46 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLA--GVEVVVLERLVER   46 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCCC-
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            44578999999999999999999998  8999999997654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.86  E-value=1.5e-05  Score=88.93  Aligned_cols=39  Identities=26%  Similarity=0.482  Sum_probs=33.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhc-CCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRL-GKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~-~~~~i~vid~~~~~  504 (706)
                      +++||||||||+||+++|..|++.. .+.+|+|||+.+..
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   63 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIP   63 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Confidence            4679999999999999999999943 48899999986643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.85  E-value=0.00016  Score=80.95  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEE---EEEeCCCce--EEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEA---VFKSEDKTE--RLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v---~~~~~~~g~--~i~~D~vI~a~G~~~~  324 (706)
                      ..+...+.+.+++.||+++++++|+++..++ +.+   .+.. .+|+  ++.+|.||+|+|..+.
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEe-CCCcEEEEEcCEEEEeCCCCcc
Confidence            4677888888999999999999999996544 433   3322 2454  6899999999997765

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.85  E-value=2e-05  Score=87.67  Aligned_cols=38  Identities=24%  Similarity=0.455  Sum_probs=32.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhc-CCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRL-GKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~-~~~~i~vid~~~~  503 (706)
                      +++||||||||++|+++|..|++.. .+.+|+|||+.+.
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            5689999999999999999999932 3789999998653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.83  E-value=1.6e-05  Score=88.76  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~--G~~V~VlEr~~~~   84 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAG--GVGALVLEKLVEP   84 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHT--TCCEEEEBSCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEcCCCCC
Confidence            46999999999999999999998  8999999997654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.81  E-value=2.2e-05  Score=83.16  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=31.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .++||+|||||.+|+++|..|+++  +.+|+|||++.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~--G~~V~lle~~~   38 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKR--GEEVTVIEKRF   38 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            367999999999999999999998  78999999874

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.80  E-value=3.2e-06  Score=87.69  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=33.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||+||++||.+|+++..+.+|+|||+++..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            356999999999999999999865558999999997653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.80  E-value=7.9e-06  Score=87.39  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             ccccccccCcchhHHHHHHHHHh-hcCC-CcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTS-RLGK-GQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~-~~~~-~~i~vid~~~  502 (706)
                      .++||+|||||.+|+++|..|++ +  + .+|+|||+++
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~--G~~~V~vlE~~~   56 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNH--GITNVAVLEKGW   56 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHH--CCCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhc--CCCcEEEEeCCC
Confidence            36799999999999999999999 7  7 8999999976

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.79  E-value=3.3e-05  Score=84.96  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~--G~~v~vlE~~~~~   47 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLG--GVDVMVLEQLPQR   47 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence            467999999999999999999998  8999999997654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.77  E-value=6.2e-05  Score=83.46  Aligned_cols=43  Identities=21%  Similarity=0.347  Sum_probs=33.3

Q ss_pred             CCcEEEEceeEEEEcCC--C--EEEeCCCeEEEecEEEEcccccccc
Q psy8791          96 SGATWVKDKIVSFDPEN--N--RVRTQAGSEISYEYMIVASGIQMYY  138 (706)
Q Consensus        96 ~~v~~i~~~v~~id~~~--~--~v~~~~g~~~~yd~lviAtG~~~~~  138 (706)
                      .++++..++|++++.+.  .  .|.+.+|.++.+|+||.|+|.....
T Consensus       189 ~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          189 LGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             SCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             CCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            57888888899987643  2  4666777779999999999986543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.72  E-value=1.3e-05  Score=84.78  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=33.0

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ...++||+|||||.+|+++|..|+ +  +.+|+|+|+++..
T Consensus         6 ~~~~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~~   43 (381)
T 3nyc_A            6 HPIEADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQP   43 (381)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSST
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCCc
Confidence            345789999999999999999999 5  7899999997643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.72  E-value=1.9e-05  Score=90.53  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=32.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||||||||.+|+++|..|+++  +.+|+|||+++..
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~--G~~V~vlEk~~~~  307 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRR--GWQVTLYCADEAP  307 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCcc
Confidence            47999999999999999999998  8899999986543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.72  E-value=1.8e-05  Score=90.86  Aligned_cols=37  Identities=16%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||||||||.+|+++|..|+++  +.+|+|||+++..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~--G~~V~vlEk~~~~  299 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRR--GAVVTLYCADAQP  299 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTT--TCCEEEEESSSST
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC--CCcEEEEeCCCcc
Confidence            357999999999999999999998  8899999996543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.71  E-value=2.5e-05  Score=84.90  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||+|||||+||+++|..|++.  +.+|+|+|+.+.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~--G~~V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRR--GLKILLVDSKPW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSS--SCCEEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence            47999999999999999999987  899999999764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.70  E-value=2.3e-05  Score=84.09  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCc-EEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQ-VSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~-i~vid~~~~~  504 (706)
                      |..+||+|||||++|+++|..|++.  +.+ |+|+|+.+..
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~--G~~~v~v~E~~~~~   40 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSEI   40 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCCCc
Confidence            3457999999999999999999998  889 9999997653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.68  E-value=0.00011  Score=83.50  Aligned_cols=59  Identities=5%  Similarity=0.030  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhCCc--eEEcCCceEEEeCCCC----EEEEEeC-----CCc--eEEeecEEEECCCCCch
Q psy8791         266 PFYAEKIHDILIGRGV--DVHKGKALVEIDLANK----EAVFKSE-----DKT--ERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~----~v~~~~~-----~~g--~~i~~D~vI~a~G~~~~  324 (706)
                      ..+.+.+.+.+++.|+  +++.++++++++.+++    .+.+...     .+|  +++.+|+||.|.|....
T Consensus       141 ~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~  212 (639)
T 2dkh_A          141 ARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN  212 (639)
T ss_dssp             HHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH
Confidence            4566777788888877  9999999999975531    2433211     134  67999999999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.65  E-value=2.7e-05  Score=82.21  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++||+|||||.+|+++|..|+++  +.+|+|||+.+.
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~--G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA--GLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            36999999999999999999998  789999998754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.65  E-value=4.9e-05  Score=84.27  Aligned_cols=43  Identities=21%  Similarity=0.347  Sum_probs=34.1

Q ss_pred             CCcEEEeceEEEEEcCC--C--eEEcCCCcEEeeCEEEEecCcccCc
Q psy8791         595 SGATWVKDKIVSFDPEN--N--RVRTQAGSEISYEYMIVASGIQMYY  637 (706)
Q Consensus       595 ~gv~~~~~~v~~id~~~--~--~V~~~~g~~i~yd~lViAtGs~~~~  637 (706)
                      .|++++.++|++++.+.  .  .|++.+|.++.+|+||.|+|.....
T Consensus       189 ~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          189 LGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             SCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             CCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            58999877899997653  2  4667787789999999999987654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.64  E-value=2.9e-05  Score=86.42  Aligned_cols=36  Identities=28%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||++|+++|..|++.  +.+|+|||+++..
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~--G~~v~viEr~~~~   40 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQ--GVRVLVVERRPGL   40 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSSSC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            47999999999999999999998  8899999997654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.62  E-value=4.4e-05  Score=84.42  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=29.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhc-CCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL-GKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~-~~~~i~vid~~~~  503 (706)
                      ++||||||||.+|+++|..|++.. .+.+|+|||+.+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            468999999999999999999922 2789999998653

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.61  E-value=6.3e-05  Score=80.34  Aligned_cols=36  Identities=25%  Similarity=0.482  Sum_probs=32.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCc
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHY  505 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~  505 (706)
                      ++|+|||||++|+++|..|++.  +.+|+|+|+++...
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~--G~~v~v~Er~~~~~   37 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH--GIKVTIYERNSAAS   37 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEecCCCCC
Confidence            3799999999999999999998  89999999876543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.58  E-value=5.4e-05  Score=82.57  Aligned_cols=31  Identities=19%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      ||||||+|.||+++|..|++.  +.+|+|||+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~--G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRA--GKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEeCC
Confidence            689999999999999999987  7899999997

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.55  E-value=7.5e-05  Score=83.72  Aligned_cols=38  Identities=26%  Similarity=0.307  Sum_probs=32.9

Q ss_pred             cccccccCcchhHHHHHHHHHhh----cCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSR----LGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~----~~~~~i~vid~~~~~  504 (706)
                      .+||||||||+||+++|..|++.    .++.+|+|||+.+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~   76 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   76 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence            37999999999999999999986    337899999997654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.54  E-value=4.3e-05  Score=84.47  Aligned_cols=54  Identities=9%  Similarity=0.076  Sum_probs=46.0

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM  321 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~  321 (706)
                      ...+.+.+.+.|.+.|++++++++|++|..+++.++.   .+|+++.||.||.+++.
T Consensus       221 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~---~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          221 TGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTL---QDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTEEEE---TTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHHHhcCeeeecceEEEEEEccCCEEEE---cCCCEEECCEEEECCCH
Confidence            4567778888888899999999999999998877654   38999999999999764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.53  E-value=0.00011  Score=82.32  Aligned_cols=37  Identities=30%  Similarity=0.340  Sum_probs=33.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||||||||.||+++|..|++.  +.+|+|+|+.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~--G~~V~vlEk~~~~  161 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPVI  161 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            357999999999999999999998  7899999997653

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.50  E-value=0.00011  Score=78.26  Aligned_cols=34  Identities=15%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +||+|||||++|+++|..|++.  +.+|+|+|+.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            6899999999999999999998  899999998763

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.48  E-value=0.00025  Score=77.95  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=31.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +++||+|||||.+|+++|..|+++  +.+|+|+|+++
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~--G~~V~llE~~~   36 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGR--GLSVLMLEAQD   36 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC--CCCEEEEECCC
Confidence            468999999999999999999998  88999999965

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.46  E-value=0.00015  Score=74.44  Aligned_cols=39  Identities=23%  Similarity=0.254  Sum_probs=33.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|+++.++.+|+|||+++..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            357999999999999999999986567899999987653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.46  E-value=0.00015  Score=81.17  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||||||||.||+++|..|++.  +.+|+|||+.+..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~--G~~V~vlEk~~~~  156 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFS  156 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            357999999999999999999998  7899999997654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.41  E-value=0.00012  Score=78.66  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~~~   67 (706)
                      .+++|+|||||++||+||++|++.  | ++|+|+|++++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~--g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA--GFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEECCCCC
Confidence            457999999999999999999998  8 899999998864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.37  E-value=0.00015  Score=76.07  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=34.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC-CC
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT-DD   66 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~-~~   66 (706)
                      +...++|+|||||++||+||+.|++.  |++|+|+|++ +.
T Consensus        41 ~~~~~~V~IIGAGiaGL~aA~~L~~~--G~~V~VlE~~~~~   79 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLLTRA--GHDVTILEANANR   79 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHHHHT--SCEEEEECSCSSC
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHC--CCcEEEEeccccc
Confidence            34567999999999999999999999  8999999999 64

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.35  E-value=0.00015  Score=78.75  Aligned_cols=59  Identities=8%  Similarity=-0.062  Sum_probs=48.5

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCC--CCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLA--NKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.+++.|++++++++|++|..+  +++++.+.+ +|+++.||.||+|+|..+.
T Consensus       241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            4678889999999999999999999999765  555544444 5788999999999998764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.35  E-value=0.00012  Score=80.17  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=44.6

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE-EEEEeCCCceEEeecEEEECCCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE-AVFKSEDKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-v~~~~~~~g~~i~~D~vI~a~G~~  322 (706)
                      ...+.+.+.+.+++.|++|+++++|++|+.+++. +.+ .+ ++.++.||.||+|++..
T Consensus       233 ~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v-~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          233 LEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKV-SL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEE-EC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEE-EE-CCeEEEcCEEEECCCHH
Confidence            3578888999999999999999999999865543 333 33 45689999999998754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.35  E-value=0.0002  Score=83.95  Aligned_cols=36  Identities=14%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCC-cEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~~  503 (706)
                      .++||||||||.+|+++|..|+++  +. +|+|||+++.
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~--G~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTR--GWNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCC
Confidence            467999999999999999999998  66 8999998764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.35  E-value=0.00033  Score=77.92  Aligned_cols=37  Identities=27%  Similarity=0.408  Sum_probs=33.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+.+..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~--G~~V~vlEr~~~~   61 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR--QVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            357999999999999999999998  8999999997654

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.35  E-value=8.4e-05  Score=81.03  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhc----CCCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKL----GKGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~----~~~~Vtlie~~~~~   67 (706)
                      +++|+|||||++||+||++|+++.    ++++|+|+|+++..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            479999999999999999999992    23999999998763

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.34  E-value=0.00016  Score=75.90  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++||+|||||++|+++|++|+++  |.+|+|||++.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~--G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCEEEEEeccC
Confidence            457999999999999999999998  89999999976

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.32  E-value=0.00012  Score=78.96  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .+++|+|||||++|+++|..|+++  |++|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~--G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHT--TCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence            347999999999999999999999  99999999987

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.32  E-value=0.00017  Score=76.45  Aligned_cols=37  Identities=32%  Similarity=0.520  Sum_probs=33.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ++|+|||||++|+++|..|++..+|.+|+|+|+++..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999998678999999998753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.31  E-value=0.00012  Score=73.07  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||+||++||..|+++  +.+|+|+|+++..
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSRGS   37 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence            5899999999999999999998  8999999997754

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.25  E-value=0.00021  Score=73.40  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+||+|||||++|+++|..|+++.++++|+|||+++.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            5799999999999999999999756899999999874

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.25  E-value=0.00023  Score=78.14  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ..++|+|||||++||+||+.|++.  |++|+|+|+++..
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~   46 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKA--GYKVTVLEARTRP   46 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeccCCC
Confidence            357999999999999999999998  8999999999863

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.23  E-value=0.00013  Score=82.67  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=33.0

Q ss_pred             ccccccccCcchhHHHHHHHHHh-hcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTS-RLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~-~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++ .  +.+|+|||+.+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~--G~~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFP--DIRTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCT--TSCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            35799999999999999999998 7  8999999997654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.23  E-value=0.00097  Score=68.08  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=33.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||+|++|+++|..|.+..++.+|+|+|+++..
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            56999999999999999999987667899999987653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.22  E-value=0.00015  Score=80.28  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~~~   67 (706)
                      .++|+|||||+|||+||+.|++.  | ++|+|+|+++..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~--G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQN--GIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHT--TCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc--CCCCEEEEeCCCCC
Confidence            46899999999999999999998  8 999999999863

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.22  E-value=0.00018  Score=75.11  Aligned_cols=63  Identities=13%  Similarity=0.110  Sum_probs=44.5

Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCCCCCCCce
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYV  339 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l~~~~G~i  339 (706)
                      .+..+...+.+.+++.|++++. ++|++++.+            ..+.+|.||.|+|.....++....+...+|++
T Consensus       140 ~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~------------~~~~a~~VV~A~G~~s~~l~~~~~l~p~rg~~  202 (351)
T 3g3e_A          140 EGKNYLQWLTERLTERGVKFFQ-RKVESFEEV------------AREGADVIVNCTGVWAGALQRDPLLQPGRGQI  202 (351)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH------------HHTTCSEEEECCGGGGGGTSCCTTCEEEEEEE
T ss_pred             cHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh------------hcCCCCEEEECCCcChHhhcCCCceeecCCcE
Confidence            3567888888999999999988 777766432            12679999999999887655433333334443

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.22  E-value=0.00024  Score=75.07  Aligned_cols=38  Identities=32%  Similarity=0.465  Sum_probs=34.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ...++|+|||||++|++||.+|++.  +.+|+|+|+++..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHC--CCceEEEeccCCC
Confidence            3467999999999999999999998  8999999998863

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.20  E-value=0.00026  Score=78.84  Aligned_cols=36  Identities=33%  Similarity=0.439  Sum_probs=32.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+||+|||||.+|+++|..|+++  +.+|+|+|+++.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~--G~~V~LlEk~d~   52 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVR--GIQTGLVEMNDF   52 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCCC
Confidence            358999999999999999999998  899999999753

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.19  E-value=0.00024  Score=76.04  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCe-EEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQ-VSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~-Vtlie~~~~   66 (706)
                      .++|+|||||++|+++|..|++.  |.+ |+|||+.+.
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~--G~~~v~v~E~~~~   39 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSE   39 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCCC
Confidence            47999999999999999999998  899 999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.16  E-value=0.00025  Score=77.49  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      .+++|+|||||++||+||..|++.  |++|+|+|+++...
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~--g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSR--GTDAVLLESSARLG   52 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCCC
Confidence            457999999999999999999998  89999999998643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.15  E-value=0.00026  Score=75.60  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=47.9

Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceE---------EEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhh-cCCC
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALV---------EIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA-TSRL  332 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~---------~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~-~~~l  332 (706)
                      .+..+...+.+.+++.|++++.+++|+         ++..+++.+. +.+++| ++.+|.||.|+|.....++. ..++
T Consensus       170 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~-v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~  246 (405)
T 3c4n_A          170 RPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQI-VVHETR-QIRAGVIIVAAGAAGPALVEQGLGL  246 (405)
T ss_dssp             CHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC--------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEE-EEECCc-EEECCEEEECCCccHHHHHHHhcCC
Confidence            346788888899999999999999999         8876555553 334455 79999999999998766655 4443

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.15  E-value=0.00036  Score=74.26  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      .++||+|||||++||+||+.|++. +|++|+|+|++++.
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~-~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQ-LDKRVLVLERRPHI   43 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHH-SCCCEEEECSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            357999999999999999999987 36899999999864

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.11  E-value=0.00037  Score=76.05  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      +++|+|||||++||+||++|++..++.+|+|+|+++..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            57999999999999999999999333999999998763

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.10  E-value=0.00027  Score=76.70  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      +++|+|||||++||+||.+|++.  |++|+|+|+++...
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKA--GLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCCC
Confidence            46899999999999999999998  89999999998643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.08  E-value=0.00036  Score=71.28  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=33.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||+|||||++|++||..|++..++++|+|+|+++.
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            489999999999999999999766799999999884

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.07  E-value=0.00036  Score=73.35  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+|||||++|++||.+|++.  |++|+|+|+++.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~   35 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNH   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence            5899999999999999999998  899999999885

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.06  E-value=0.00044  Score=71.61  Aligned_cols=45  Identities=13%  Similarity=0.003  Sum_probs=39.2

Q ss_pred             ccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCC
Q psy8791         345 TLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL  392 (706)
Q Consensus       345 ~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~  392 (706)
                      +|+.+..+|+|++|+.....   -...|..||-.++.|++..+.|++.
T Consensus       322 tle~k~~~~Lf~AGqi~G~~---Gy~eAaa~Gl~AG~naa~~~~g~~p  366 (443)
T 3g5s_A          322 TLEFREAEGLYAAGVLAGVE---GYLESAATGFLAGLNAARKALGLPP  366 (443)
T ss_dssp             TSEETTEEEEEECGGGGTBC---SHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             hceecCCCCEEECccccccH---HHHHHHHhHHHHHHHHHHHhcCCCC
Confidence            78988899999999998873   3457889999999999999999876

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.06  E-value=0.00039  Score=76.50  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ..++|+|||||++||+||+.|++.  |++|+|+|+++..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTT--SCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEEeCCCC
Confidence            457999999999999999999998  8999999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.04  E-value=0.00037  Score=76.50  Aligned_cols=57  Identities=12%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHHHhCC-ceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCC
Q psy8791         265 SPFYAEKIHDILIGRG-VDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMG  322 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~  322 (706)
                      ...+.+.+.+.+++.| ++++++++|++|+.+++.+.+. +++|+++.+|.||+|+|..
T Consensus       254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~-~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVT-ARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEE-ETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEE-ECCCCEEEcCEEEECCCHH
Confidence            4678888888999998 9999999999998655555543 3467789999999999863

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.02  E-value=0.00056  Score=75.16  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=34.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ...++|+|||||++||+||..|++.  |++|+|+|+++..
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~--g~~v~vlE~~~~~   68 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERP   68 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCC
Confidence            3457999999999999999999999  8999999999864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=96.97  E-value=0.0011  Score=74.15  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||+|.+|+++|..|++.  +.+|+|+|+.+..
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~--g~~v~~~e~~~~~  161 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPIP  161 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSS--SCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            56999999999999999999987  7899999997654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=96.96  E-value=0.00039  Score=76.72  Aligned_cols=59  Identities=8%  Similarity=-0.004  Sum_probs=45.8

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCC-CCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLA-NKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.+++.||+++.+ +|++++.+ ++.+..+.+++|+++.+|+||.|+|.+..
T Consensus       172 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          172 ADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3567788888888899999999 99999753 33333334457778999999999998764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.96  E-value=0.0005  Score=73.96  Aligned_cols=35  Identities=31%  Similarity=0.473  Sum_probs=32.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+||||||||.+|+++|..|++.  +.+|+|+|+++.
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~--G~~V~vlE~~~~   35 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNA--GKKVLLLEGGER   35 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCC
Confidence            57999999999999999999998  889999998664

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=96.96  E-value=0.00061  Score=72.08  Aligned_cols=36  Identities=33%  Similarity=0.557  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      +++|+|||||++|+++|..|++.  +++|+|+|+++..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEEecCCc
Confidence            36999999999999999999998  8999999998863

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.94  E-value=0.00035  Score=76.86  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |++|||||||.+||+||..|++.  +.+|+|+|+++..
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~--G~~V~VlEa~~~~   36 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAA--GIPVLLLEQRDKP   36 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHT--TCCEEEECCC---
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC--CCcEEEEccCCCC
Confidence            77999999999999999999998  8999999997753

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.94  E-value=0.00054  Score=76.25  Aligned_cols=35  Identities=29%  Similarity=0.551  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++|+|||||++||++|..|++.  |.+|+|||+.+.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~--G~~V~vlEr~~~   60 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHR--QVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            46899999999999999999998  899999999875

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=96.94  E-value=0.00053  Score=75.37  Aligned_cols=64  Identities=6%  Similarity=-0.104  Sum_probs=48.7

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeCCCce--EEeecEEEECCCCCchhhhh
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSEDKTE--RLPYAIMHVTPPMGPVPELA  328 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g~--~i~~D~vI~a~G~~~~~~~~  328 (706)
                      +..+...+.+.+++.|++++.+++|+++..+++.  +......+|+  ++.+|.||.|+|.+......
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~  215 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFD  215 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHH
Confidence            5677888888899999999999999999765542  3222213454  79999999999999876544

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=96.85  E-value=0.00081  Score=73.51  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~~~   67 (706)
                      ..++|+|||||++||+||++|++.  + .+|+|+|+++..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~--g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL--GYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEeCCCCC
Confidence            357999999999999999999998  6 799999999863

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.81  E-value=0.00094  Score=75.91  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             cccccccCcchhHHHHHHHHHh-----hcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTS-----RLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~-----~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||++|+++|..|++     .  +.+|+|||+.+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~--Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP--DLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST--TCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC--CCCEEEEeCCCCC
Confidence            5799999999999999999998     6  8999999987653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.80  E-value=0.00082  Score=75.04  Aligned_cols=66  Identities=8%  Similarity=-0.151  Sum_probs=49.2

Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe-----CCCceEEeecEEEECCCCCchhhhhc
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS-----EDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~-----~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      .+..+...+.+.+++.|++++.+++|+++..+++.+..+.     ++++.++.+|.||.|+|.+.......
T Consensus       186 ~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~  256 (571)
T 2rgh_A          186 NDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNL  256 (571)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTT
T ss_pred             chHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHh
Confidence            3566777777888899999999999999986655543222     22334799999999999987765543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=96.73  E-value=0.0012  Score=71.01  Aligned_cols=59  Identities=14%  Similarity=0.011  Sum_probs=48.9

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.+++.|++++++++|++|..+++.++.+.. +|+++.||.||+|+|..+.
T Consensus       233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCeEEECCEEEECCCCCcc
Confidence            3578888889999999999999999999876666654443 6889999999999988764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.70  E-value=0.00084  Score=75.14  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+||||||||.|||+||..|++.  |.+|+|||+.+.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~--G~~V~vlEK~~~   41 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            46999999999999999999998  899999999753

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.66  E-value=0.0018  Score=73.73  Aligned_cols=38  Identities=24%  Similarity=0.476  Sum_probs=34.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ....++|+|||||++||+||..|++.  |++|+|+|+++.
T Consensus       104 ~~~~~~v~viG~G~~gl~~a~~l~~~--g~~v~~~e~~~~  141 (662)
T 2z3y_A          104 TKKTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDR  141 (662)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            34568999999999999999999998  899999999985

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.65  E-value=0.0012  Score=74.63  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+||||||||.|||+||..|++.  |.+|+|||+.+.
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~--G~~V~vlEK~~~   39 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQK--GLSTIVLSLIPV   39 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCG
T ss_pred             cccEEEECchHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence            46999999999999999999998  899999999753

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.63  E-value=0.0011  Score=74.38  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .+||||||||.|||+||..|++.  |.+|+|||+.+
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~--G~~V~vlEK~~   51 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEA--GFNTACVTKLF   51 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred             cCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccC
Confidence            46999999999999999999998  89999999975

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.61  E-value=0.002  Score=74.74  Aligned_cols=37  Identities=24%  Similarity=0.475  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...++|+|||||++||+||+.|+++  |++|+|+|+++.
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~--g~~v~v~E~~~~  312 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDR  312 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCc
Confidence            4567999999999999999999998  899999999986

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.60  E-value=0.0013  Score=73.96  Aligned_cols=37  Identities=19%  Similarity=0.430  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      .+||||||||+||++||..|++.  |++|+|||+.+...
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~--G~~V~liE~~~~~g   82 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGA--GYKVAMFDIGEIDS   82 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhC--CCcEEEEeccCCCC
Confidence            46999999999999999999998  89999999988643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.59  E-value=0.002  Score=74.10  Aligned_cols=36  Identities=25%  Similarity=0.497  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||||++|++||..|++.  |++|+|+|+++.
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~  370 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNF--GIKVTVLEAKDR  370 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEecccc
Confidence            457999999999999999999999  899999999875

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.58  E-value=0.0015  Score=73.36  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCC--CeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGK--GQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~--~~Vtlie~~~~   66 (706)
                      .+||||||||+||++||..|++.  |  .+|+|||+.+.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~--G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQA--NPNAKIALISKVYP   41 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH--CTTCCEEEEESSCG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhc--CCCCcEEEEeCCCC
Confidence            46999999999999999999998  6  99999999753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.58  E-value=0.0024  Score=70.57  Aligned_cols=37  Identities=30%  Similarity=0.734  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+||||||.||+.+|.+|++. ++++|.|+|+++.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCC
Confidence            468999999999999999999984 4789999999975

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.58  E-value=0.0012  Score=74.92  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-----hcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTS-----KLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~-----~~~~~~Vtlie~~~~   66 (706)
                      .++|+|||||++||++|..|++     .  |++|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~--Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP--DLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST--TCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC--CCCEEEEeCCCC
Confidence            4689999999999999999999     7  899999999764

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.51  E-value=0.0014  Score=72.45  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .++||||||||.||++||..|++.  +.+|+|+|+++..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~   39 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRV   39 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            357999999999999999999998  7899999997754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.48  E-value=0.0018  Score=73.24  Aligned_cols=35  Identities=29%  Similarity=0.532  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHH---h-hcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFT---S-KLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~---~-~~~~~~Vtlie~~~~   66 (706)
                      .+||||||||.|||+||..|+   + .  |.+|+|||+.+.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~--G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLG--GLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTT--TCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhC--CCeEEEEeCcCC
Confidence            479999999999999999999   5 6  899999999863

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.47  E-value=0.0016  Score=69.79  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~~~  504 (706)
                      +.+||+|||||.+|++||..|++.  + .+|+|+|+++..
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~--g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA--GFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEECCCCC
Confidence            457999999999999999999998  7 899999987653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.47  E-value=0.0013  Score=69.89  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=32.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++||+|||||.+|+++|..|+++  +.+|+|||+.+.
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~--G~~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAER--GHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence            57999999999999999999998  889999998754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.43  E-value=0.002  Score=70.11  Aligned_cols=55  Identities=7%  Similarity=0.062  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHHHhC--------CceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC
Q psy8791         266 PFYAEKIHDILIGR--------GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM  321 (706)
Q Consensus       266 ~~~~~~~~~~l~~~--------gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~  321 (706)
                      ..+.+.+.+.+.+.        |++++++++|++|+.+++.+.+ .+.+|+++.+|.||+|++.
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v-~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTV-KTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEE-EETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEE-EECCCCEEEcCEEEEecCH
Confidence            45666666665544        7899999999999876666664 4457889999999999874

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.41  E-value=0.0022  Score=72.48  Aligned_cols=42  Identities=7%  Similarity=0.102  Sum_probs=33.4

Q ss_pred             CCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         349 VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       349 ~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      |+.|++||+|||+....-..+..+..+|.+++.++...+.+.
T Consensus       450 t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~  491 (662)
T 3gyx_A          450 TTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDH  491 (662)
T ss_dssp             CSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhC
Confidence            899999999999864333346677888999999998888654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.39  E-value=0.0017  Score=71.56  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=32.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~~~  504 (706)
                      ..+||+|||||.|||+||..|++.  + .+|+|+|+++..
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~--G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN--GIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT--TCCSEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc--CCCCEEEEeCCCCC
Confidence            457999999999999999999997  7 899999997753

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=96.36  E-value=0.0018  Score=69.41  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |||||||||.+|++||..|+++  +.+|+|+|+++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~--G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKA--GHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCceEEEeCCCCC
Confidence            4899999999999999999998  7999999997654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.34  E-value=0.0019  Score=69.19  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||.+|+++|..|+++  +.+|+|+|+++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~--G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARN--GHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence            4899999999999999999998  7899999997754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=96.34  E-value=0.002  Score=70.21  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=33.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .++||+|||||.+|+++|..|++..++.+|+|+|+++.
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            46799999999999999999999844489999999764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.32  E-value=0.0024  Score=70.64  Aligned_cols=34  Identities=35%  Similarity=0.646  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+||||||||.|||+||..|++   +.+|+|||+.+.
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~~   41 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGPV   41 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSCT
T ss_pred             CCCEEEECccHHHHHHHHHHhc---CCcEEEEECCCC
Confidence            4799999999999999999987   589999999874

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=96.31  E-value=0.0023  Score=69.22  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||||||||.+|+++|..|++.  +.+|+|+|+++..
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~--G~~V~vlE~~~~~   46 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVD--GKKVLHIDKQDHY   46 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence            457999999999999999999998  8899999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.31  E-value=0.0018  Score=67.74  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=31.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .++||+|||||.+|+++|..|+++  +.+|+|||+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~--G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCEEEEEeccC
Confidence            467999999999999999999987  78999999864

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.29  E-value=0.0026  Score=70.70  Aligned_cols=38  Identities=18%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ...+|+||||||++|+.+|.+|++.  +.+|+|+|+++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~--g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence            3568999999999999999999998  8999999998753

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.28  E-value=0.002  Score=70.29  Aligned_cols=36  Identities=22%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCC--cEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKG--QVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~--~i~vid~~~~~  504 (706)
                      |+||+|||||.+|+++|..|++.  +.  +|+|+|+++..
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~--G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRA--PCPPKVVLVESSERL   39 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTS--SSCCEEEEECSSSSS
T ss_pred             CceEEEECCcHHHHHHHHHHHhC--CCCCcEEEEeCCCCC
Confidence            46999999999999999999998  56  99999997654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.28  E-value=0.0022  Score=67.68  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||++|+++|..|++..|+.+|+|+|+++..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3799999999999999999998678999999997654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.27  E-value=0.0019  Score=71.08  Aligned_cols=38  Identities=21%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             CCcEE-EeceEEEEEcCCCeEEcCCCcEEeeCEEEEecC
Q psy8791         595 SGATW-VKDKIVSFDPENNRVRTQAGSEISYEYMIVASG  632 (706)
Q Consensus       595 ~gv~~-~~~~v~~id~~~~~V~~~~g~~i~yd~lViAtG  632 (706)
                      .|+++ ++.+|++|+.+++.|++.+|+++.||++|.++-
T Consensus       235 ~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          235 EKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             GGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSC
T ss_pred             cCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCC
Confidence            47777 677999999999999999999999999987665

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.27  E-value=0.0019  Score=72.91  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCC--------CeEEEEcCCC-Cc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGK--------GQVSIVEPTD-DH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~--------~~Vtlie~~~-~~   67 (706)
                      .++|+|||||++||+||+.|++.  +        ++|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~--g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL--AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH--HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc--CcccccCCCceEEEEeccCccc
Confidence            46899999999999999999998  5        8999999998 64

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.25  E-value=0.0018  Score=69.68  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++|+|||||++|+++|..|++.  +.+|+|||+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~--G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHT--TCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence            6899999999999999999998  89999999876

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.25  E-value=0.0024  Score=66.15  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=32.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+||+|||||+||+.+|..+++.  +.+|+|||+++.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~--G~~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRL--GVPVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence            57999999999999999999998  899999998763

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.21  E-value=0.0017  Score=70.54  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhc----CCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL----GKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~----~~~~i~vid~~~~~  504 (706)
                      ++||+|||||.+|++||..|++..    |+.+|+|+|+++..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            579999999999999999999984    34899999997653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.19  E-value=0.003  Score=66.08  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCC-CC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT-DD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~-~~  503 (706)
                      .+.++|+|||||.+|+++|..|++.  +.+|+|+|++ +.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~--G~~V~VlE~~~~~   79 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRA--GHDVTILEANANR   79 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHT--SCEEEEECSCSSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC--CCcEEEEeccccc
Confidence            3467999999999999999999998  7899999997 54

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.15  E-value=0.0029  Score=68.46  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||.+|++||..|++.  +.+|+|+|+++..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~   40 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA--GLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCC
Confidence            457999999999999999999997  7899999997654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=96.11  E-value=0.0034  Score=66.63  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=32.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .++||+|||||.+|+++|..|++. ++.+|+|+|+++..
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~-~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQ-LDKRVLVLERRPHI   43 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHH-SCCCEEEECSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            467999999999999999999986 35799999997653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.07  E-value=0.003  Score=66.61  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++||+|||||.+|+++|..|+++  +.+|+|||+++.
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~--G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCC
Confidence            46999999999999999999998  789999998653

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.06  E-value=0.0027  Score=66.10  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhc----CCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRL----GKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~----~~~~i~vid~~~  502 (706)
                      +||+|||||.+|+++|..|+++.    |+.+|+|+|++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            48999999999999999999984    458999999865

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=96.03  E-value=0.004  Score=65.71  Aligned_cols=37  Identities=30%  Similarity=0.422  Sum_probs=33.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||++|+++|..|++.  +.+|+|+|+++..
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~   64 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHI   64 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC--CCceEEEeccCCC
Confidence            467999999999999999999987  7899999997653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=96.02  E-value=0.0034  Score=66.86  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++||+|||||.+|+++|..|+++.|+.+|+|||+..
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            579999999999999999999986778999999864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=96.02  E-value=0.0023  Score=69.19  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTD  502 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~  502 (706)
                      |.++||||||||.+|+++|..|+++  + .+|+|||++.
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~--G~~~V~vlE~~~   57 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVW--SGGSVLVVDAGH   57 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHH--HCSCEEEEESSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEccCC
Confidence            4568999999999999999999998  5 7999999833

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=95.92  E-value=0.0044  Score=64.97  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++||+|||||.+|+++|..|.+.  +.+|+|+|+++.
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~   35 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNH   35 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence            36899999999999999999987  789999999764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.89  E-value=0.004  Score=65.76  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=32.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .++|+|||||.+|+++|..|.+.  +.+|+|+|+++..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEEecCCc
Confidence            46899999999999999999987  7899999997653

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=95.86  E-value=0.0053  Score=68.21  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...+|+||||||.||+.+|.+|++. ++.+|+|||+.++
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~~   54 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGSY   54 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSCC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence            3468999999999999999999875 5789999999983

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.85  E-value=0.0048  Score=67.42  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.+||+|||||.||++||..|++.  +.+|+|+|+++.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~--g~~v~v~E~~~~   45 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKA--GYKVTVLEARTR   45 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeccCC
Confidence            356999999999999999999987  789999999765

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.80  E-value=0.0058  Score=66.92  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||.||++||..|++.  +.+|+|+|+++..
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~   74 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVA--GFKTLLLEARDRI   74 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSBS
T ss_pred             CCEEEECCcHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            7999999999999999999997  7899999998653

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=95.79  E-value=0.0049  Score=67.08  Aligned_cols=37  Identities=27%  Similarity=0.475  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||.+|+++|..|++.  +.+|+|+|+++..
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~--g~~v~v~E~~~~~   51 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSR--GTDAVLLESSARL   51 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCC
Confidence            356999999999999999999987  7899999998753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.75  E-value=0.004  Score=68.83  Aligned_cols=36  Identities=33%  Similarity=0.597  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ..+|+||||||.||+.+|.+|++   +.+|+|+|+++..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc---CCcEEEEecCCCc
Confidence            45899999999999999999998   5899999999853

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=95.75  E-value=0.005  Score=67.58  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=32.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +++||+|||||.+|+++|..|++.  +.+|+|+|+++..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTT--SCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEEeCCCC
Confidence            457999999999999999999987  7899999998754

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=95.70  E-value=0.0065  Score=67.49  Aligned_cols=37  Identities=30%  Similarity=0.480  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+||||||.||+.+|.+|++. +..+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence            358999999999999999999987 3479999999986

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=95.70  E-value=0.0054  Score=67.46  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=33.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||||||+|.||+++|..|++.  +.+|+|||+.+..
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~--G~~V~vlEk~~~~   76 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARA--GADVLVLERTSGW   76 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            458999999999999999999998  7899999997653

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=95.61  E-value=0.0063  Score=66.36  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=32.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~~~  504 (706)
                      +++||+|||||.+|+++|..|.+.  + .+|+|+|+++..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~--g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL--GYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEeCCCCC
Confidence            457999999999999999999987  5 699999998654

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.38  E-value=0.01  Score=64.98  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .++||+|||||.+|+++|..|++.  +.+|+|+|+++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~--g~~v~vlE~~~~~   68 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERP   68 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCC
Confidence            356999999999999999999998  7899999997653

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.37  E-value=0.0096  Score=64.17  Aligned_cols=39  Identities=8%  Similarity=0.254  Sum_probs=34.6

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ++.++||+|||+|.+|+++|..|.+.  +.+|+++|++++.
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~--g~~v~~~e~~~~~   55 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHY--GKKILVLDRNPYY   55 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeccCCC
Confidence            44578999999999999999999987  8899999998753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=95.35  E-value=0.011  Score=63.52  Aligned_cols=37  Identities=14%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ...+||+|||+|.+|+++|..|.+.  +.+|+++|+++.
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~--g~~v~~~e~~~~   40 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVN--GKKVLHMDRNPY   40 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            3467999999999999999999987  789999999765

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.34  E-value=0.013  Score=64.21  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=34.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ...+|++|||||.+|+.+|.+|.+.  +.+|+|||+++..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~--~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCC
Confidence            3458999999999999999999997  8999999998753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=95.23  E-value=0.0093  Score=67.05  Aligned_cols=37  Identities=19%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||||||||+||+++|..|++.  +.+|+|||+.+..
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~--G~~V~liE~~~~~   81 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGA--GYKVAMFDIGEID   81 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhC--CCcEEEEeccCCC
Confidence            357999999999999999999997  8899999997654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=95.20  E-value=0.01  Score=66.32  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=31.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||||||||.||+++|..+++.  +.+|+|+|+.+.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~--G~~V~vlEK~~~   41 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            57999999999999999999987  789999999754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.20  E-value=0.0096  Score=66.77  Aligned_cols=36  Identities=25%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+||||||||.||++||..+++.  +.+|+|||+.+.
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~--G~~V~vlEK~~~   52 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEA--GFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence            457999999999999999999987  789999999653

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.07  E-value=0.014  Score=63.94  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      ..+|++|||||.+|+.+|.+|++.  +.+|+|||+++...
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~--~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCCC
Confidence            347999999999999999999997  89999999988543

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=95.05  E-value=0.011  Score=66.67  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=32.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+||||||||.||+++|..+++.  +.+|+|||+.+.
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~--G~~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQK--GLSTIVLSLIPV   39 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCG
T ss_pred             ccccEEEECchHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence            357999999999999999999987  789999999653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=94.88  E-value=0.016  Score=65.41  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             ccccccccCcchhHHHHHHHHH---h-hcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFT---S-RLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~---~-~~~~~~i~vid~~~~  503 (706)
                      ..+||||||||.||++||..++   + .  +.+|+|||+.+.
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~--G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLG--GLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT--TCCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhC--CCeEEEEeCcCC
Confidence            3479999999999999999998   4 5  789999999763

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=94.85  E-value=0.021  Score=63.74  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ..+|++|||||.+|+.+|.+|++. ++.+|+|||+++..
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCcc
Confidence            458999999999999999999992 38999999999754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=94.85  E-value=0.014  Score=64.94  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++||+|||||.+|+++|..|+++  +.+|+|||+++
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~r--G~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAAS--GIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            57999999999999999999998  89999999875

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=94.79  E-value=0.014  Score=65.42  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||||||||.||+++|..|++..++.+|+|||+.+.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            4799999999999999999999833389999999653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.75  E-value=0.032  Score=49.26  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+.+|+|+|+|.-|...|..|.+.  |++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHH
Confidence            346899999999999999999998  899999999873

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=94.58  E-value=0.014  Score=64.76  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      .+|+||||||.||+.+|.+|++. ++.+|.|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence            47999999999999999999983 48999999998754

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=94.55  E-value=0.023  Score=62.80  Aligned_cols=38  Identities=34%  Similarity=0.594  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ..+|++|||||.+|+.+|.+|++. ++.+|+|||+.+..
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCcC
Confidence            357999999999999999999985 57899999999753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.54  E-value=0.038  Score=49.77  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|+|+|..|...|..|.+.  +++|+++|+++.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence            346899999999999999999998  899999999863

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.51  E-value=0.03  Score=49.11  Aligned_cols=34  Identities=15%  Similarity=0.401  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|+|+|+|..|...|..|.+.  +++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence            46899999999999999999998  89999999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.47  E-value=0.031  Score=47.29  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~   65 (706)
                      .++|+|+|+|..|..++..|.+.  + ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCH
Confidence            46899999999999999999998  7 8999999975

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=94.45  E-value=0.021  Score=64.49  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=31.8

Q ss_pred             cccccccCcchhHHHHHHHHHhh----cCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSR----LGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~----~~~~~i~vid~~~~  503 (706)
                      .+||||||||.||++||..|++.    .|+.+|+|||+.+.
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            47999999999999999999885    24689999998653

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.41  E-value=0.023  Score=61.65  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCC-cEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~~  503 (706)
                      +.+||+|||||.+|+++|..|.+.  +. +|+|+|+++.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~--g~~~v~~~e~~~~   39 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEA--GITDLLILEATDH   39 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc--CCCceEEEeCCCC
Confidence            356899999999999999999987  66 8999999764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.38  E-value=0.034  Score=49.08  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++|+|+|+|.-|...|..|.+.  |++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCH
Confidence            46899999999999999999998  89999999976

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=94.37  E-value=0.021  Score=63.20  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+|+||||+|++|+.+|.+|.+.  +.+|+|+|+.+.
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~--g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCCC
Confidence            468999999999999999999987  789999998753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=94.25  E-value=0.028  Score=64.60  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=32.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||+|||||.+|+++|..|++.  +.+|+|+|+.+..
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~  371 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNF--GIKVTVLEAKDRI  371 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEecccce
Confidence            357999999999999999999998  7899999986643

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=94.22  E-value=0.021  Score=63.00  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=30.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||||||||.||+++|..|++   +.+|+|||+.+.
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~~   41 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGPV   41 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSCT
T ss_pred             CCCEEEECccHHHHHHHHHHhc---CCcEEEEECCCC
Confidence            5799999999999999999987   579999999764

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=94.08  E-value=0.023  Score=62.62  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=31.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .||+||||+|+||+.+|.+|.+ +++.+|+|+|..+
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse-~~~~~VLvLEaG~   51 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSE-DPDSRVLLIEAGE   51 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTT-STTSCEEEECSSB
T ss_pred             CeeEEEECccHHHHHHHHHHHh-CCCCeEEEEcCCC
Confidence            5899999999999999999987 3578999999864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=94.04  E-value=0.034  Score=63.09  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=33.4

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+.++|+|||||++|+++|..|.+.  +.+|+|+|+.+..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~--g~~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence            3467999999999999999999987  8899999987653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.98  E-value=0.062  Score=48.16  Aligned_cols=34  Identities=9%  Similarity=0.207  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +.+|+|+|+|..|...|..|.+.  +++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence            46899999999999999999998  89999999974

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=93.84  E-value=0.03  Score=62.17  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=32.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.||+||||||.||+.+|.+|.+. ++.+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence            358999999999999999999875 5579999998765

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=93.81  E-value=0.029  Score=62.21  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ..||+||||||.||+.+|.+|.+. ++.+|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence            468999999999999999999763 578999999876

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=93.68  E-value=0.043  Score=63.62  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ...++|+|||||++|+++|..|.+.  +.+|+|+|+.+..
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~--g~~v~v~E~~~~~  313 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRV  313 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCcC
Confidence            3467999999999999999999988  8899999987653

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=93.56  E-value=0.035  Score=61.43  Aligned_cols=36  Identities=33%  Similarity=0.369  Sum_probs=31.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .||+||||||.||+.+|.+|.+ +++.+|+|||+.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse-~~~~~VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTE-DPDVSVLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTT-STTCCEEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHh-CcCCcEEEEecCCc
Confidence            4799999999999999999987 35899999998654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.51  E-value=0.075  Score=53.76  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|.|||+|.-|.+.|..|++.  |++|+++|+++.
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~   49 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTED   49 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence            346899999999999999999998  899999999863

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=93.51  E-value=0.032  Score=61.51  Aligned_cols=35  Identities=31%  Similarity=0.598  Sum_probs=31.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+|+||||+|+||+.+|.+|.+   +.+|+|+|+.+.
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc---CCcEEEEecCCC
Confidence            46899999999999999999988   579999998754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.36  E-value=0.085  Score=50.42  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|||||-.|...|..|.+.  |.+|+||+++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence            457899999999999999999999  89999999864

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=93.09  E-value=0.035  Score=62.66  Aligned_cols=38  Identities=24%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCC------CcEEEECCCC-CC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGK------GQVSIVEPTD-DH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~------~~i~vid~~~-~~  504 (706)
                      +++|+|||||.||+++|..|.+..+.      .+|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            56899999999999999999987311      7899999987 54

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=92.79  E-value=0.073  Score=58.23  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=32.7

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ...+|++|||+|.+|+.+|.+|.+.  +.+|+|||+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~--~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence            3568999999999999999999985  889999998753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.73  E-value=0.055  Score=47.67  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .|++|+|+|+|.-|...|..|.+.  +.+|+++|.++
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~   39 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSK   39 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCH
Confidence            456899999999999999999987  78999999754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=92.60  E-value=0.1  Score=45.81  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++|+|+|+|..|...|..|.+.  +++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            35799999999999999999998  89999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.32  E-value=0.081  Score=50.61  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+|+|+|.-|...|..|.+.  +++|+++|+++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR--KYGVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence            4799999999999999999998  899999998863

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.16  E-value=0.087  Score=52.05  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|||||-.|...|..|.+.  |++|+||+++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~--Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhC--CCEEEEEcCCC
Confidence            357899999999999999999999  99999999865

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=92.16  E-value=0.078  Score=57.96  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=31.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+|++|||+|++|+.+|.+|.+.  +.+|+|||+.+.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~--~~~v~~~e~~~~   39 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQL   39 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCC
Confidence            357999999999999999999986  789999998763

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=91.61  E-value=0.092  Score=58.52  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+|+||||+|.+|+.+|.+|.+. ++.+|+|||+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCc
Confidence            458999999999999999999882 3789999998754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.37  E-value=0.19  Score=51.87  Aligned_cols=35  Identities=29%  Similarity=0.539  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~   65 (706)
                      ...+|||+|||.||+++|..|...  |. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~--Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAA--GATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHc--CCCeEEEEECCC
Confidence            457999999999999999999998  77 999999974

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=91.35  E-value=0.19  Score=52.38  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...+|+|||+|.+|+.+|..|+..  |.+|+++|+++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence            346899999999999999999988  899999999974

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.03  E-value=0.13  Score=55.04  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++|+|||.|.+|+++|..|.++  |++|+++|.++.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTT--TCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhC--CCEEEEEECCCC
Confidence            46899999999999999999998  999999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.02  E-value=0.21  Score=51.71  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...+|+|||+|..|+.+|..|+..  |.+|+++|+++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence            346899999999999999999998  899999999873

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.96  E-value=0.091  Score=56.51  Aligned_cols=36  Identities=22%  Similarity=0.606  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +.|+|+|+|+|-.|.+.|..|.+.  +++|++||+++.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~--~~~v~vId~d~~   37 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGE--NNDITIVDKDGD   37 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCST--TEEEEEEESCHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHH
Confidence            457899999999999999999988  899999999873

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=90.68  E-value=0.23  Score=50.76  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCCHHHHH-HHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCS-MAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~-aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +..++|.|||.|-+|++ +|..|.++  |++|++.|.++.
T Consensus         2 ~~~~~i~~iGiGg~Gms~~A~~L~~~--G~~V~~~D~~~~   39 (326)
T 3eag_A            2 NAMKHIHIIGIGGTFMGGLAAIAKEA--GFEVSGCDAKMY   39 (326)
T ss_dssp             -CCCEEEEESCCSHHHHHHHHHHHHT--TCEEEEEESSCC
T ss_pred             CCCcEEEEEEECHHHHHHHHHHHHhC--CCEEEEEcCCCC
Confidence            34678999999999997 77788888  999999999873

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=90.65  E-value=0.24  Score=55.08  Aligned_cols=62  Identities=3%  Similarity=-0.129  Sum_probs=49.6

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCC--CEEEEEeCCCceEEeecEEEECCCCCchhh
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN--KEAVFKSEDKTERLPYAIMHVTPPMGPVPE  326 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~  326 (706)
                      ...+.+.+.+.+++.|.+++++++|.+|..++  ++++.+.+.+|+++.||.||..+...|...
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~~~  440 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT  440 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCHhH
Confidence            46788899999999999999999999987554  556665555799999999998766655433

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=90.61  E-value=0.32  Score=51.52  Aligned_cols=39  Identities=26%  Similarity=0.237  Sum_probs=34.5

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +.+.+.+|.|||.|+.||..|..|++.  |++|+.+|-++.
T Consensus        17 ~~~~m~~IaViGlGYVGLp~A~~~A~~--G~~V~g~Did~~   55 (444)
T 3vtf_A           17 RGSHMASLSVLGLGYVGVVHAVGFALL--GHRVVGYDVNPS   55 (444)
T ss_dssp             TTCCCCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHH
T ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHhC--CCcEEEEECCHH
Confidence            444667999999999999999999999  999999998763

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.58  E-value=0.25  Score=50.95  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPT   64 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~   64 (706)
                      ...+|||+|||-+|+.+|..|...  |. +|+++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~--G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDL--GVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECC
Confidence            467999999999999999999998  76 89999998

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=90.34  E-value=0.2  Score=53.76  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|.|||.|.+|+++|..|+++  |++|++.|.++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~--G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKL--GAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEeCCc
Confidence            57899999999999999999999  99999999986

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.19  E-value=0.2  Score=44.78  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=30.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ..+++|+|+|.-|...+..|.+.  +.+|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence            45799999999999999999887  78999999853

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=90.14  E-value=0.27  Score=50.06  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC--eEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG--QVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~--~Vtlie~~~   65 (706)
                      .++|+|||+|..|...|..|.+.  ++  +|+++|+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~--g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCh
Confidence            46899999999999999999988  77  999999975

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=90.12  E-value=0.15  Score=56.22  Aligned_cols=36  Identities=39%  Similarity=0.594  Sum_probs=31.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+|++|||+|.+|+.+|.+|.+. ++.+|+|+|+.+.
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~   48 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPD   48 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCc
Confidence            58999999999999999999875 5689999998754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.80  E-value=0.34  Score=44.68  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..+|+|+|+|..|..+|..|.+.. +++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARY-GKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCH
Confidence            468999999999999999998751 57999999986

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=89.76  E-value=0.31  Score=50.61  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|+|||||.-|..+|+.+++.  |++|+++|+++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~--G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKA--GMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCC
Confidence            47899999999999999999998  999999998874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.53  E-value=0.2  Score=43.55  Aligned_cols=33  Identities=12%  Similarity=0.355  Sum_probs=29.2

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++|+|+|+|.-|...+..|.+.  +.+|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence            4799999999999999999887  78999998744

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=89.53  E-value=0.33  Score=49.42  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|.|||+|.-|.+.|..|++.  |++|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh
Confidence            6899999999999999999998  89999999976

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=89.46  E-value=0.43  Score=48.75  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      +++|.|||+|..|.+.|..|+..  ++ +|+|+|.++.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~--g~~~V~L~D~~~~   44 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKG   44 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECChh
Confidence            46899999999999999999998  76 8999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=89.45  E-value=0.19  Score=43.95  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=29.7

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +|.+|+|+|+|.-|..++..|.+.  +.+|+++|+++
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~   39 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINE   39 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            356799999999999999999987  68899998743

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.43  E-value=0.18  Score=42.35  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=29.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~  502 (706)
                      |++|+|+|+|..|..++..|.+.  + .+|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCH
Confidence            45899999999999999999987  5 7899998743

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=89.37  E-value=0.32  Score=52.51  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|.|||+|+.|+..|..|++.  |++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCH
Confidence            57999999999999999999998  89999999876

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.29  E-value=0.33  Score=48.43  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++|.|||+|.-|...|..|++.  |++|+++|+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence            46899999999999999999998  899999999863

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=89.19  E-value=0.41  Score=45.27  Aligned_cols=36  Identities=17%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|.|||+|..|.+.|..|.+.  +++|+++++++.
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~--g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIA--GHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence            356899999999999999999998  899999998864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=89.09  E-value=0.39  Score=48.58  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ...+++|.|||.|.-|...|..|.+.  |++|+++|+++
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~--G~~V~~~dr~~   54 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKN--GFKVTVWNRTL   54 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSG
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCH
Confidence            34467999999999999999999998  89999999986

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=88.84  E-value=0.39  Score=47.87  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|.|||+|..|...|..|.+.  |++|+++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCcc
Confidence            4799999999999999999998  899999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=88.61  E-value=0.33  Score=49.07  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|.|||+|.-|..-|..++..  |++|+|+|.++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence            45899999999999999999998  999999999863

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.59  E-value=0.4  Score=50.45  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|||+|.+|+.+|..++..  |.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence            56899999999999999999988  889999999863

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.57  E-value=0.4  Score=48.45  Aligned_cols=34  Identities=18%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++|.|||+|..|...|..|.+.  |++|+++++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~   36 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWP   36 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCH
Confidence            46899999999999999999998  89999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.48  E-value=0.39  Score=51.38  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|.|||+|+.|+..|..|++.  |++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHH
Confidence            6899999999999999999998  899999999863

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=88.48  E-value=0.51  Score=47.93  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      +++|.|||+|..|.+.|..|++.  ++ +|+++|+++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~--g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKD--NLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCch
Confidence            46899999999999999999998  77 9999999863

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=88.39  E-value=0.43  Score=47.41  Aligned_cols=35  Identities=11%  Similarity=0.122  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .+++|+|.|+|+-|-..+..|.++  |++|+++++++
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~   38 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQ--GWRIIGTSRNP   38 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGG--TCEEEEEESCG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHC--CCEEEEEEcCh
Confidence            357899999999999999999998  89999999876

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=88.39  E-value=0.61  Score=49.66  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...++|.|||+|.-|...|..|++.  |++|+++|+++.
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e   88 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQ   88 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHH
Confidence            3457899999999999999999998  999999999874

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=88.35  E-value=0.27  Score=44.01  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ..+|+|+|+|.-|..++..|++.  +.+|+++|+++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence            34799999999999999999887  78999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=88.17  E-value=0.3  Score=42.79  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+|+|+|+|.-|...|..|++.  +.+|+++|.++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRT   41 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHH
Confidence            4799999999999999999987  789999998653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=88.02  E-value=0.49  Score=46.01  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=32.5

Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          25 SSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        25 ~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ......++|.|||+|.-|.+.|..|.+.  |++|+++++++.
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~~   53 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDPK   53 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCChh
Confidence            3444568999999999999999999998  899999998863

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=87.95  E-value=0.5  Score=49.43  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...+|+|+|+|.+|+.+|..++..  |.+|+++|+++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence            456899999999999999999988  889999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=87.81  E-value=0.37  Score=48.86  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|.|||+|.-|.+.|..|++.  |++|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS--GEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT--SCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCc
Confidence            6899999999999999999998  89999999975

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.73  E-value=0.53  Score=47.59  Aligned_cols=36  Identities=19%  Similarity=0.409  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|.|||+|..|.+.|..|++...+++|+++|+++.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            479999999999999999998522689999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=87.68  E-value=0.26  Score=43.43  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|+|||+|..|...|..|.+.  +++|+++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYP--QYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTT--TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCH
Confidence            56899999999999999999886  78899999876

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=87.51  E-value=0.51  Score=47.57  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCC--eEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKG--QVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~--~Vtlie~~~   65 (706)
                      ++|.|||+|..|.+.|..|+..  ++  +|+++|.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCH
Confidence            4799999999999999999988  77  999999975

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=87.50  E-value=0.54  Score=47.72  Aligned_cols=34  Identities=18%  Similarity=0.403  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC--eEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG--QVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~--~Vtlie~~~   65 (706)
                      +++|+|||+|..|.+.|..|...  +.  +|+++|.++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~--~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALR--QTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCh
Confidence            46899999999999999999987  55  899999875

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=87.35  E-value=0.57  Score=47.10  Aligned_cols=35  Identities=23%  Similarity=0.424  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC--eEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG--QVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~--~Vtlie~~~   65 (706)
                      ..++|.|||+|..|.+.|..|...  ++  +|+|+|.++
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~--g~~~ev~L~Di~~   49 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAK--GIADRLVLLDLSE   49 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCc
Confidence            457899999999999999999888  66  999999986

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=87.18  E-value=0.64  Score=47.25  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      .++|.|||+|..|...|..|+..  ++ +|+|+|.++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCHH
Confidence            46899999999999999999988  66 8999998763

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=87.13  E-value=0.53  Score=50.70  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|.|||.|+.|+..|..|++..++++|+++|+++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            468999999999999999999885568999999876

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=87.09  E-value=0.57  Score=49.88  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|.|||.|+-|+..|..|++.  |++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence            35899999999999999999999  999999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.01  E-value=0.45  Score=50.22  Aligned_cols=35  Identities=14%  Similarity=0.248  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|||.|.-|...|..|.+.  +++|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHH
Confidence            46899999999999999999998  899999999974

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.99  E-value=0.47  Score=47.61  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++|.|||+|.-|.+.|..|.+.  +++|+++++++
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~--g~~V~~~~r~~   35 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQS--LPHTTLIGRHA   35 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHH--CTTCEEEESSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEecc
Confidence            36899999999999999999998  78999999985

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=86.92  E-value=0.65  Score=47.36  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      +++|.|||+|..|.+.|..|+..  ++ +|+|+|.++.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~--g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQK--DLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCHH
Confidence            36899999999999999999988  77 8999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.81  E-value=0.49  Score=50.70  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|+|||||-.|...|..|.+.  |.+|+|++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~--ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEA--GARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--cCEEEEEcCCC
Confidence            47899999999999999999998  89999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=86.74  E-value=0.65  Score=45.26  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~   65 (706)
                      ..+|+|||+|-.|..+|..|++.  |. +|+|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~--Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc--CCCeEEEEcCCC
Confidence            46899999999999999999999  75 899999986

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=86.71  E-value=0.7  Score=45.45  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++++|||+|-+|-++|..|.+.  |.+|+|++|+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~--G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ--GLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence            67999999999999999999998  689999999863

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=86.68  E-value=0.55  Score=48.51  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++|.|||+|.-|.+.|..|++.  |++|+++++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARK--GQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHH
Confidence            46899999999999999999998  899999999753

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=86.65  E-value=0.57  Score=50.60  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++|.|||.|+.|+..|..|++..++++|+++|+++.
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            4689999999999999999999855689999998763

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=86.41  E-value=0.58  Score=47.58  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|.|||.|..|...|..|.+.  |++|+++|+++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEA--GYALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhC--CCeEEEEcCCH
Confidence            457999999999999999999998  89999999886

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=86.41  E-value=0.61  Score=48.30  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..+|+|+|+|.+|+.++..|+..  |.+|+++|+++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence            36899999999999999999988  88999999986

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=86.31  E-value=0.63  Score=47.61  Aligned_cols=34  Identities=18%  Similarity=0.391  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|.|||+|.-|.+.|..|++.  +++|+++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~~   36 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALA--GEAINVLARGA   36 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHT--TCCEEEECCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC--CCEEEEEEChH
Confidence            36899999999999999999998  89999999853

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=86.28  E-value=0.8  Score=46.50  Aligned_cols=35  Identities=20%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC--eEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG--QVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~--~Vtlie~~~   65 (706)
                      ..++|.|||+|..|.+.|..|+..  +.  +|+++|.++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~--~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQ--GITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEecch
Confidence            356899999999999999999988  55  899999865

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.26  E-value=0.68  Score=43.98  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .++|.|||+|..|.+.|..|.+.  +++|+++++++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~--g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGS--GFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            46899999999999999999988  88999999875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=86.20  E-value=0.5  Score=50.36  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|.|||+|+.|+..|..|++.  |++|+++|+++.
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~--G~~V~~~d~~~~   34 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSST   34 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCHH
Confidence            4799999999999999999998  899999998763

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=86.13  E-value=0.66  Score=46.25  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|.|||.|..|...|..|.+.  |++|+++|+++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA--GCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCeEEEEcCCHH
Confidence            5899999999999999999998  899999999863

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=86.13  E-value=0.5  Score=47.42  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|.|||.|.-|...|..|.+.  |++|+++|+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS--TTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHH
Confidence            46899999999999999999998  899999999874

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=85.97  E-value=0.69  Score=47.68  Aligned_cols=34  Identities=26%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++|.|||+|..|...|..|.+.  +++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence            36899999999999999999998  89999999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=85.84  E-value=0.71  Score=44.33  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|.|| |.-|...+.+|.++  |++|+++++++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNK--GHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhC--CCeEEEEECCh
Confidence            4578999999 99999999999998  89999999976

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=85.81  E-value=0.77  Score=43.32  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|+|.|| |+-|...+..|.++  |++|++++|++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR--GHEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEEcCc
Confidence            47999997 99999999999998  89999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	706
d1fcda2	141	c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehy	5e-20
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	8e-10
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	6e-05
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	4e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.003
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	4e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.001
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.002
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	0.004

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 141

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 84.7 bits (209), Expect = 5e-20
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 203 KTLRN-LQHFQSGP-VLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG 260
             LR  L+    G  V+   PA P +C   P +       YL+ HK      +   +   
Sbjct: 21  AILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTF 80

Query: 261 VLFPSPF--YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVT 318
                    +            ++ H G     + +   E + ++    +     ++++ 
Sbjct: 81  SKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAF-GDEFKADVINLI 139

Query: 319 PP 320
           PP
Sbjct: 140 PP 141

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 56.7 bits (135), Expect = 8e-10
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 1/178 (0%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           K++VVGGG  G + A          +V+++EP  D+Y   +   + GG +KL   +    
Sbjct: 4   KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63

Query: 92  SVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSA-LINA 150
            +   G   V D     DP+   V+T  G+E  Y+  +VA GI++ YD+++  +  +   
Sbjct: 64  GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123

Query: 151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNL 208
            G  +           F       +        A   P SG S N   +     +  L
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVVL 181

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 19/74 (25%), Positives = 30/74 (40%)

Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL 531
           VVGGG  G + A          +V+++EP  D+Y   +   + GG +KL   +     + 
Sbjct: 7   VVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLR 66

Query: 532 PSGATWVKDKIVSF 545
             G   V D     
Sbjct: 67  AHGIQVVHDSATGI 80

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           K++V+G    G     +  +     ++   E  D   +        G    L    + + 
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA-----GMQLYLEGKVKDVN 56

Query: 92  SVLPSGATWVKDKIVSF 108
           SV       ++ + V+ 
Sbjct: 57  SVRYMTGEKMESRGVNV 73

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL 531
           V+G    G     +  +     ++   E  D   +        G    L    + + SV 
Sbjct: 5   VLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA-----GMQLYLEGKVKDVNSVR 59

Query: 532 PSGATWVKDKIVSF 545
                 ++ + V+ 
Sbjct: 60  YMTGEKMESRGVNV 73

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
            ++V+G G A  S  A+   + G  Q  I    D+         +        D+ +   
Sbjct: 5   PVVVLGAGLASVSFVAEL-RQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62

Query: 92  SVL--PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQ 135
                P     +     SFDP+ + V    G  + Y  +++A+G  
Sbjct: 63  DCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAA 108

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 44/340 (12%), Positives = 90/340 (26%), Gaps = 37/340 (10%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
           +++VVG G +G S AAK  S+ G   + I+E TD          IGG M           
Sbjct: 2   RVIVVGAGMSGIS-AAKRLSEAGITDLLILEATDH---------IGGRMH----KTNFAG 47

Query: 92  SVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINAL 151
             +  GA WV            ++         +  +     ++ +       +  +   
Sbjct: 48  INVELGANWV------EGVNGGKM------NPIWPIVNSTLKLRNFRSDFDYLAQNVYKE 95

Query: 152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF 211
                   +V   +       +   + S    A  + D  +         +         
Sbjct: 96  DGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVD 155

Query: 212 QSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEK 271
                               ++  +    +                   V + +  Y + 
Sbjct: 156 MVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKT 215

Query: 272 IHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPP-------MGPV 324
                      +   K + EI  +      K+ED +      +M            +   
Sbjct: 216 DDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFK 275

Query: 325 PEL--ATSRLVDQSGYVNVDKATLQHVKYS--NVFAIGDC 360
           P+L     R + Q   V V++     ++     V+  G+ 
Sbjct: 276 PKLPTWKVRAIYQFWPVGVNRYEYDQLRAPVGRVYFTGEH 315

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR 525
           Q     ++G GAAG    A   ++LGK  V++ +            + GGG    ++   
Sbjct: 3   QYSENIIIGAGAAGL-FCAAQLAKLGK-SVTVFDNGKKI--GRKILMSGGGFCNFTNLEV 58

Query: 526 PMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDS 585
                L     +VK  +  + +    +++    I     +             ++ L   
Sbjct: 59  TPAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSE 118

Query: 586 RRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
                + +   +   + + +  D +   V     ++   + +IVA+G
Sbjct: 119 CDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG 165

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 32  KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM 90
           + L VGGG      A  F +   +G QV +    D         L     ++L  +   +
Sbjct: 20  RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINV 79

Query: 91  K-SVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
           +    P+  T   D           V  ++G+E  Y+ +++A G
Sbjct: 80  RTHENPAKVTKNADGTR-------HVVFESGAEADYDVVMLAIG 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	706
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.78
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.75
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.71
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.64
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.64
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.59
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.59
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.58
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.56
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.53
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.5
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.5
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.5
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.48
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.47
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.42
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.42
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.37
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.32
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.31
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.28
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.27
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.24
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.23
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.2
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.19
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.17
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.17
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.16
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.15
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.14
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.05
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.01
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.01
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.98
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.97
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.96
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.94
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.94
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.93
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.93
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.92
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.92
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.92
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.91
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.9
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.89
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.88
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.85
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.85
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.83
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.82
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.81
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.79
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.78
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.78
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.77
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.77
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.77
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.77
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.76
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.74
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.74
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.73
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.7
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.7
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.68
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.68
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.68
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.67
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.67
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.67
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.66
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.64
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.62
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.62
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.62
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.61
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.61
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.57
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.56
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.56
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.55
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.53
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.53
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.53
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.52
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.51
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.49
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.49
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.47
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.46
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.44
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.42
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.38
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.38
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.38
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.37
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.35
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.3
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.3
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.3
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.28
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.26
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.25
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.24
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.24
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.23
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.15
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.14
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.13
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.12
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.07
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.02
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.0
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.98
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.94
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.94
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.89
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.89
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.88
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.79
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.77
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.74
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.74
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.71
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.67
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.59
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.54
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.54
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.53
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.48
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.46
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	97.42
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.42
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.32
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.27
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.26
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.26
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.25
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.25
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.23
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.21
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.2
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.18
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.18
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.17
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.11
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.08
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.07
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.04
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.03
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.99
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.96
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.95
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.92
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.89
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.82
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.77
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.76
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.76
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	96.73
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.71
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.7
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.7
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	96.68
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.62
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.59
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.57
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	96.49
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.49
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.48
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.38
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.37
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.33
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	96.33
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.27
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	96.18
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	96.01
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.94
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.9
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.77
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.72
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.68
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.63
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	95.6
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.58
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.55
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.36
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	95.34
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	95.25
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.21
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.14
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.03
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.92
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	94.89
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.85
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.8
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.8
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.78
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.77
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.28
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.28
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.12
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.98
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.66
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.62
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.56
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.51
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.47
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.24
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.12
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.05
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.01
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.66
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.64
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.58
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.4
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.39
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.36
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.16
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.15
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.05
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	91.58
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.48
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	91.36
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.02
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.95
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.89
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.85
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.46
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	90.4
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.2
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.15
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	90.02
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.92
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.86
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	89.73
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.69
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.68
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.34
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.29
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.26
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	89.02
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.86
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.76
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	88.74
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	88.71
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	88.66
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.41
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.23
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.2
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	87.59
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.21
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	87.12
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	87.1
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	87.04
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	87.02
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	86.93
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.88
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.5
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	86.37
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	86.15
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	86.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	85.91
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	85.86
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	85.82
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	85.6
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	85.53
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.47
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.39
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.37
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.11
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	84.92
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	84.91
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.89
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.7
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	84.45
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	84.43
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.99
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.99
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	83.46
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	82.81
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	82.48
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.48
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.45
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.22
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	82.15
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	82.08
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	81.92
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	81.73
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.65
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	81.63
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	81.47
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	81.34
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	80.53
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	80.17
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	80.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	80.12

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.78  E-value=1.4e-18  Score=163.51  Aligned_cols=113  Identities=29%  Similarity=0.508  Sum_probs=93.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEEEc
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDP  110 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~id~  110 (706)
                      ++|||||||++|+.+|..|++..++.+|||||+++.+...+..+......................++++..+++..++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   82 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDP   82 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECCT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeeee
Confidence            69999999999999999999986668999999999888777766555444444444444555556788999999999999


Q ss_pred             CCCEEEeCCCeEEEecEEEEccccccccCCCCC
Q psy8791         111 ENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG  143 (706)
Q Consensus       111 ~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g  143 (706)
                      ..+.+.+.++++++||+||+|||..++.+.+++
T Consensus        83 ~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~  115 (186)
T d1fcda1          83 DKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQ  115 (186)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCTTSTE
T ss_pred             ccceeecccceeeccceEEEEeccccchhhhhh
Confidence            999999999999999999999999887765554

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.75  E-value=5.5e-18  Score=161.58  Aligned_cols=108  Identities=19%  Similarity=0.323  Sum_probs=86.5

Q ss_pred             HHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCc--eEEeecEEEECCCCCch--------hhhhcCCC-CCCCCceeeC
Q psy8791         274 DILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT--ERLPYAIMHVTPPMGPV--------PELATSRL-VDQSGYVNVD  342 (706)
Q Consensus       274 ~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g--~~i~~D~vI~a~G~~~~--------~~~~~~~l-~~~~G~i~vd  342 (706)
                      +.++++||++++++.|.+|+.+++.+++....+|  .++++|.+|+++|.+|+        ..+.+.++ ++++|+|.||
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd  143 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTD  143 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCC
T ss_pred             HHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecC
Confidence            4566789999999999999998888877655544  45789999999987654        22223344 7889999999


Q ss_pred             ccccccCCCCCEEEccccCCCCCC--------chHHHHHHhHHHHHHHH
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTS--------KTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~--------~~~~~a~~qg~~~a~ni  383 (706)
                      + ++| |+.|+|||+|||+..+..        ..+..|.+||+.+|+||
T Consensus       144 ~-~~~-T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni  190 (198)
T d1nhpa1         144 E-YMR-TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL  190 (198)
T ss_dssp             T-TCB-CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTS
T ss_pred             C-ccc-ccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhh
Confidence            8 788 899999999999976431        35888999999999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.6e-18  Score=163.69  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=84.1

Q ss_pred             HHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch--hhhhcCCC--CCCCCceeeCccccccCCC
Q psy8791         276 LIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV--PELATSRL--VDQSGYVNVDKATLQHVKY  351 (706)
Q Consensus       276 l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~--~~~~~~~l--~~~~G~i~vd~~~l~~~~~  351 (706)
                      +++.||+++++++|++|+.+++.|+.   ++|++++||.+|||+|..|+  .+....++  .+..|.+.||+ +|| ++ 
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~~~V~l---~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~-~l~-~~-  166 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRDNMVKL---NDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNA-ELQ-AR-  166 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGGTEEEE---TTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCT-TCE-EE-
T ss_pred             HHHCCeEEEeCCEEEEeeccCceeee---ccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhH-hcC-cC-
Confidence            45689999999999999987766654   48999999999999998776  33344566  46678999999 688 55 


Q ss_pred             CCEEEccccCCCCC-------CchHHHHHHhHHHHHHHHH
Q psy8791         352 SNVFAIGDCSNLPT-------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       352 ~~Ifa~GD~~~~~~-------~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+|||+|||+..+.       +..++.|..||+++|+||+
T Consensus       167 ~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~  206 (213)
T d1m6ia1         167 SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT  206 (213)
T ss_dssp             TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhc
Confidence            99999999987643       2467899999999999994

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.64  E-value=1.3e-15  Score=147.59  Aligned_cols=118  Identities=21%  Similarity=0.319  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECC--------CCCchhh---hhcCCC-CCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTP--------PMGPVPE---LATSRL-VDQ  335 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~--------G~~~~~~---~~~~~l-~~~  335 (706)
                      +.+.++..++..||+++.+..  .+.... ........++.++.+|.+|+++        |.+|+..   +++.|+ +++
T Consensus        93 l~~~~~~~~~~~~V~~i~G~a--~f~~~~-~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~  169 (223)
T d1ebda1          93 LTGGVEGLLKGNKVEIVKGEA--YFVDAN-TVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTN  169 (223)
T ss_dssp             HHHHHHHHHHTTTCEEEESEE--EEEETT-EEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCT
T ss_pred             HHhhHHHhhhccceeeeccEE--EEccCc-ccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcCceECC
Confidence            445556677888999988742  233222 2333344566789999999986        6677732   456688 899


Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCCCCCcc
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRALPHEY  396 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~~~~~~  396 (706)
                      +|+|.||+ ++| |+.|+|||+|||+..+  .+...|..||+.+|++|    .|++.+..|
T Consensus       170 ~G~I~vd~-~~~-T~~~gvyA~GDv~~~~--~~~~~A~~~g~~aa~~i----~g~~~~~dy  222 (223)
T d1ebda1         170 RGLIEVDQ-QCR-TSVPNIFAIGDIVPGP--ALAHKASYEGKVAAEAI----AGHPSAVDY  222 (223)
T ss_dssp             TSCBCCCT-TCB-CSSTTEEECGGGSSSC--CCHHHHHHHHHHHHHHH----TSCCCCCCC
T ss_pred             CCCEeECC-CCC-CCCCCEEEEeccCCCc--ccHHHHHHHHHHHHHHH----cCCCCCCCC
Confidence            99999999 677 9999999999998874  47888999999999999    466654444

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.64  E-value=2.1e-16  Score=153.23  Aligned_cols=110  Identities=18%  Similarity=0.190  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC-----Cchh---hhhcCCC-CCCCCc
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM-----GPVP---ELATSRL-VDQSGY  338 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~-----~~~~---~~~~~~l-~~~~G~  338 (706)
                      +.+.+...++..+|+++.+... -..... ........++..+.+|.||+|||.     .|+.   .+++.|+ ++++|+
T Consensus        95 ~~~~~~~~~~~~~v~~i~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~  172 (221)
T d1dxla1          95 LTRGIEGLFKKNKVTYVKGYGK-FVSPSE-ISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGR  172 (221)
T ss_dssp             HHHHHHHHHHHHTCEEEESCEE-EEETTE-EEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSC
T ss_pred             HhhHHHHhhhcCCeEEEEeccc-cccccc-cccccccccccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCc
Confidence            4455666778889998876422 222211 122222335678999999999995     4552   2455677 889999


Q ss_pred             eeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         339 VNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       339 i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      |.||+ .+| |+.|+|||+|||...|  .+...|..+|+.+|++|
T Consensus       173 i~vd~-~~~-T~v~gi~A~GDv~~g~--~l~~~A~~~g~~aa~~i  213 (221)
T d1dxla1         173 ILVNE-RFS-TNVSGVYAIGDVIPGP--MLAHKAEEDGVACVEYL  213 (221)
T ss_dssp             BCCCT-TCB-CSSTTEEECSTTSSSC--CCHHHHHHHHHHHHHHH
T ss_pred             EEeCC-Ccc-cCCCCEEEEeccCCCc--ccHHHHHHHHHHHHHHH
Confidence            99999 677 9999999999999764  47889999999999998

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.59  E-value=2.2e-15  Score=146.53  Aligned_cols=111  Identities=19%  Similarity=0.265  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh----------hhhcCCC-CCCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP----------ELATSRL-VDQS  336 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~----------~~~~~~l-~~~~  336 (706)
                      +...+...++..||+++.+..... .... ........+...+.++.+++++|.+|..          .+.+.|+ ++++
T Consensus       101 ~~~~~~~~~~~~gV~vi~G~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~  178 (229)
T d3lada1         101 LTGGVASLIKANGVTLFEGHGKLL-AGKK-VEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDER  178 (229)
T ss_dssp             HHHHHHHHHHHHTCEEEESEEEEC-STTC-EEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTT
T ss_pred             hhhhHHHHhhcCCeEEEEeEEccc-ccce-eeccccCccceeeecccccccCCcccccccccccccccchHhcCeeecCC
Confidence            344556677888999987743322 1111 1112222245678899999999988752          3345576 8899


Q ss_pred             CceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         337 GYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       337 G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+|.||+ +++ |+.|+|||+|||...+  .+.+.|..+|+.+|++|.
T Consensus       179 G~i~vd~-~~~-T~vpgiyA~GDv~~g~--~l~~~A~~~G~~aa~~i~  222 (229)
T d3lada1         179 GFIYVDD-YCA-TSVPGVYAIGDVVRGA--MLAHKASEEGVVVAERIA  222 (229)
T ss_dssp             SCBCCCT-TSB-CSSTTEEECGGGSSSC--CCHHHHHHHHHHHHHHHH
T ss_pred             CcEEecc-ccc-CCCCCEEEEeCCcchH--HHHHHHHHHHHHHHHHHc
Confidence            9999999 677 9999999999998764  478889999999999985

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=3.8e-15  Score=145.68  Aligned_cols=111  Identities=13%  Similarity=0.084  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeC-CCceEEeecEEEECCCCCchhh-----------hhcCCC-CC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSE-DKTERLPYAIMHVTPPMGPVPE-----------LATSRL-VD  334 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~-~~g~~i~~D~vI~a~G~~~~~~-----------~~~~~l-~~  334 (706)
                      +...+...+++.+|+++.+...  +... +.+..... .+...+.+|.+++++|.+|...           +...++ ++
T Consensus       103 l~~g~~~~l~~~~V~vi~G~~~--~~~~-~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~  179 (235)
T d1h6va1         103 LNWGYRVALREKKVVYENAYGK--FIGP-HKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKIN  179 (235)
T ss_dssp             HHHHHHHHHHHHTCEEECCEEE--EEET-TEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCC
T ss_pred             ccchhhhhhhccCceEEEeEEe--eccc-cceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeec
Confidence            4445566788889999987543  2222 22332221 1234688999999999988621           233355 45


Q ss_pred             C-CCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         335 Q-SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       335 ~-~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      . .|+|.||+ ++| |+.|+|||+|||...+ +.+++.|..+|+++|++|.
T Consensus       180 ~~~g~I~vd~-~~~-TsvpgIyA~GDv~~g~-~~l~~~A~~eG~~aa~~~~  227 (235)
T d1h6va1         180 EKTGKIPVTD-EEQ-TNVPYIYAIGDILEGK-LELTPVAIQAGRLLAQRLY  227 (235)
T ss_dssp             SSSCCBCCCT-TSB-CSSTTEEECGGGBTTS-CCCHHHHHHHHHHHHHHHH
T ss_pred             cccCccccCC-ccc-cCCCCEEEEEeccCCC-cccHHHHHHHHHHHHHHHc
Confidence            4 69999999 677 9999999999999754 4577889999999999994

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.58  E-value=6.5e-15  Score=146.34  Aligned_cols=100  Identities=16%  Similarity=0.057  Sum_probs=75.0

Q ss_pred             HHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh-h----------hcCCC-CCCCCceeeC
Q psy8791         275 ILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE-L----------ATSRL-VDQSGYVNVD  342 (706)
Q Consensus       275 ~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~-~----------~~~~l-~~~~G~i~vd  342 (706)
                      .+...++....+....-++.  +.+..    +|++++||.||+|+|.+|+.. +          ...|+ ++++|+|.||
T Consensus       143 ~~~~~~~~~~~~g~~~~~d~--~~v~~----~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn  216 (261)
T d1mo9a1         143 SKEQLNLEYILNCPAKVIDN--HTVEA----AGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVN  216 (261)
T ss_dssp             HHHTSCCCEEESSCCEEEET--TEEEE----TTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCC
T ss_pred             hhhcccceeEeeeEEEEeee--ccccc----ccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeC
Confidence            34445555554444433332  22332    688999999999999999822 1          12367 7899999999


Q ss_pred             ccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         343 KATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       343 ~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      + ++| |+.|+|||+|||+..  |.++..|..||+++|.||.
T Consensus       217 ~-~~~-Ts~~~IyA~GDv~~~--~~l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         217 E-YLQ-TSVPNVYAVGDLIGG--PMEMFKARKSGCYAARNVM  254 (261)
T ss_dssp             T-TSB-CSSTTEEECGGGGCS--SCSHHHHHHHHHHHHHHHT
T ss_pred             C-Ccc-cCCCCEEEEEEeCCC--cccHHHHHHHHHHHHHHHC
Confidence            9 788 999999999999876  4588999999999999993

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=2.1e-14  Score=139.98  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=78.8

Q ss_pred             HHHHHHHHhCCceEEcCCceEEEeCC----CCEEEEEeCCCc--eEEeecEEEECCCCCchhh------------hhcCC
Q psy8791         270 EKIHDILIGRGVDVHKGKALVEIDLA----NKEAVFKSEDKT--ERLPYAIMHVTPPMGPVPE------------LATSR  331 (706)
Q Consensus       270 ~~~~~~l~~~gV~v~~~~~v~~i~~~----~~~v~~~~~~~g--~~i~~D~vI~a~G~~~~~~------------~~~~~  331 (706)
                      ..+...++..||+++.+... -++..    ...+... ..+|  .++++|.+|+++|..|...            ++..+
T Consensus        98 ~~~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~-~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~g  175 (233)
T d1xdia1          98 ADITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKAT-AADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVG  175 (233)
T ss_dssp             HHHHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEE-CTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTT
T ss_pred             cceehhhcccceeEEECccc-ccccccccccceEEEE-ecCCceeeeecceeeeecCcccccccccccccccccccchhh
Confidence            34566778889998877422 11111    1223333 2234  4799999999999988632            23345


Q ss_pred             C-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         332 L-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       332 l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      + ++++|+|.||+ ++| |+.|+|||+|||+..  +++++.|..+|+++|.||.
T Consensus       176 v~~~~~G~I~vd~-~~~-T~~~gIyA~GDv~~~--~~l~~~A~~~g~~aa~~~~  225 (233)
T d1xdia1         176 IQLGRGNYLTVDR-VSR-TLATGIYAAGDCTGL--LPLASVAAMQGRIAMYHAL  225 (233)
T ss_dssp             CCCBTTTBCCCCS-SSB-CSSTTEEECSGGGTS--CSCHHHHHHHHHHHHHHHT
T ss_pred             hcccCCCcCCcCC-Ccc-cCCCCEEEEEEeCCC--chhHHHHHHHHHHHHHHHc
Confidence            5 78899999999 677 999999999999876  4578889999999999994

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.1e-14  Score=137.57  Aligned_cols=109  Identities=12%  Similarity=0.183  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh-----------hhhcCCC-CCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP-----------ELATSRL-VDQ  335 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~-----------~~~~~~l-~~~  335 (706)
                      +.....+.+++.||+++.+..... ....  ++...  ...++.+|.+++++|..|.-           .+++.|+ +++
T Consensus        93 ~~~~~~~~~~~~gV~~i~G~a~~~-~~~~--~~~~~--~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~~~  167 (221)
T d3grsa1          93 LNAIYQNNLTKSHIEIIRGHAAFT-SDPK--PTIEV--SGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDD  167 (221)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEC-SCSS--CEEEE--TTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCBCT
T ss_pred             eccchhhhhccCceEEEEEeeeec-cccc--eeeee--eccccccceeEEecCccccCCCccccCCCCcCchhcCcEECC
Confidence            445556778889999988753321 1111  22221  44688899999999976551           2556677 789


Q ss_pred             CCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHH
Q psy8791         336 SGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSA  385 (706)
Q Consensus       336 ~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~  385 (706)
                      +|+|.||+ .+| |+.|+|||+|||+..  +.+...|..+|+.+|++|..
T Consensus       168 ~G~I~vd~-~~~-T~~~gvyA~GDv~~~--~~l~~~A~~~G~~aa~~~~~  213 (221)
T d3grsa1         168 KGHIIVDE-FQN-TNVKGIYAVGDVCGK--ALLTPVAIAAGRKLAHRLFE  213 (221)
T ss_dssp             TSCBCCCT-TCB-CSSTTEEECGGGGTS--SCCHHHHHHHHHHHHHHHHS
T ss_pred             CccEEeCC-Ccc-ccCCcEEEEEEccCC--cCcHHHHHHHHHHHHHHHcC
Confidence            99999999 577 999999999999875  34778899999999999853

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.50  E-value=2.3e-13  Score=128.23  Aligned_cols=116  Identities=16%  Similarity=0.232  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCC-----chhhhhcCCC-CCCCCceee
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMG-----PVPELATSRL-VDQSGYVNV  341 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~-----~~~~~~~~~l-~~~~G~i~v  341 (706)
                      +...+++.+++.|+++..+ .|.+++..++..... + +..+..+|.+++++|..     |+..+.+.++ ++++|+|.+
T Consensus        69 l~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~-~-~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~  145 (192)
T d1vdca1          69 LTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLF-T-DSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVT  145 (192)
T ss_dssp             HHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEE-C-SSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCC
T ss_pred             HHHHHHHHHHhhcceeeee-eEEecccccCcEEec-c-cceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEe
Confidence            4444556677789998876 577887665433332 2 45678999999999863     6655555566 889999999


Q ss_pred             CccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHc
Q psy8791         342 DKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       342 d~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~  388 (706)
                      |+.+++ |+.|+|||+|||...+. +.+..|..+|..+|.++.++|.
T Consensus       146 ~~~~~~-Ts~~GV~a~GDv~~~~~-r~~v~A~g~G~~aA~~~~~yl~  190 (192)
T d1vdca1         146 KPGTTQ-TSVPGVFAAGDVQDKKY-RQAITAAGTGCMAALDAEHYLQ  190 (192)
T ss_dssp             CTTSCB-CSSTTEEECGGGGCSSC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceE-ecCCCEEEeeecCCccc-ceEEEEEechHHHHHHHHHHHh
Confidence            974454 99999999999998754 4567888999999999988774

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.50  E-value=2.6e-14  Score=138.95  Aligned_cols=72  Identities=18%  Similarity=0.312  Sum_probs=58.4

Q ss_pred             eEEeecEEEECCCCCc-h---hhhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHH
Q psy8791         308 ERLPYAIMHVTPPMGP-V---PELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDN  382 (706)
Q Consensus       308 ~~i~~D~vI~a~G~~~-~---~~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~n  382 (706)
                      +...+|.++++.|.++ +   ..++..|+ ++++|+|.||+ ++| |+.|+|||+|||...+  .+...|..||+.+|+|
T Consensus       145 ~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~-~~~-TsvpgVyAaGDv~~~~--~l~~~A~~eG~~Aa~~  220 (229)
T d1ojta1         145 KIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDK-QMR-TNVPHIYAIGDIVGQP--MLAHKAVHEGHVAAEN  220 (229)
T ss_dssp             EEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCT-TSB-CSSTTEEECGGGTCSS--CCHHHHHHHHHHHHHH
T ss_pred             cceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCC-Ccc-CCCCCEEEEEecCCCc--chHHHHHHHHHHHHHH
Confidence            4566777777776654 3   34566788 89999999998 687 9999999999999764  4788899999999999


Q ss_pred             H
Q psy8791         383 L  383 (706)
Q Consensus       383 i  383 (706)
                      |
T Consensus       221 i  221 (229)
T d1ojta1         221 C  221 (229)
T ss_dssp             H
T ss_pred             H
Confidence            8

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=1.6e-13  Score=126.17  Aligned_cols=127  Identities=23%  Similarity=0.332  Sum_probs=98.5

Q ss_pred             cEEEEEeCCCcCCC-chhHH-------------HHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEE
Q psy8791         251 AKLTYCTGMGVLFP-SPFYA-------------EKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMH  316 (706)
Q Consensus       251 ~~v~l~~~~~~~~~-~~~~~-------------~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI  316 (706)
                      .+|+++++.+.+.. ++.+.             ....+.+++.++++++++.++.++.+.. +...   +++++++|.+|
T Consensus        23 ~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~~~~---~~~~i~~D~li   98 (167)
T d1xhca1          23 YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRK-VVIT---EKGEVPYDTLV   98 (167)
T ss_dssp             SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETTTT-EEEE---SSCEEECSEEE
T ss_pred             CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccccccc-cccc---cccccccceeE
Confidence            36999987765432 22222             2224577889999999999999987654 3332   67789999999


Q ss_pred             ECCCCCchhhhhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCC--CchHHHHHHhHHHHHHHHH
Q psy8791         317 VTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT--SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       317 ~a~G~~~~~~~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~--~~~~~~a~~qg~~~a~ni~  384 (706)
                      ||+|..|++++...++...++ +.||+ ++| |+.|+|||+|||+..+.  +..+..|..||+.+|+||.
T Consensus        99 ~a~G~~~~~~~~~~gl~~~~~-i~v~~-~~~-t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~i~  165 (167)
T d1xhca1          99 LATGAPNVDLARRSGIHTGRG-ILIDD-NFR-TSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK  165 (167)
T ss_dssp             ECCCEECCHHHHHTTCCBSSS-EECCT-TSB-CSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCchhhhcCceeCCc-eeecc-ccE-ecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHHHcC
Confidence            999999888888888855454 99998 788 89999999999987654  3578889999999999983

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=2.1e-13  Score=131.55  Aligned_cols=107  Identities=23%  Similarity=0.282  Sum_probs=78.4

Q ss_pred             HHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh----------hhcCCCCCCCCce
Q psy8791         270 EKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE----------LATSRLVDQSGYV  339 (706)
Q Consensus       270 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~----------~~~~~l~~~~G~i  339 (706)
                      ......+++.+++++.+... -.+.  ..+..    ++.++.+|.+|+|+|.+|...          +...++..++|++
T Consensus       100 ~~~~~~~~~~~v~~i~G~~~-~~~~--~~~~~----~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i  172 (220)
T d1lvla1         100 TGVAALLKKHGVKVVHGWAK-VLDG--KQVEV----DGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAI  172 (220)
T ss_dssp             HHHHHHHHHTTCEEECSCEE-EEET--TEEEE----TTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEE
T ss_pred             cchhhhhccCceEEEEeeec-ccCc--ccccc----cceeEeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcc
Confidence            34456677788988877432 2222  11222    568899999999999988632          1222344568999


Q ss_pred             eeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         340 NVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       340 ~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      .||+ .+| |+.|+|||+|||...+  .+++.|..+|+.+|++|    .|++
T Consensus       173 ~vd~-~~~-T~~~~I~A~GDv~~~~--~l~~~a~~~g~~~a~~i----~G~~  216 (220)
T d1lvla1         173 AIDE-RCQ-TSMHNVWAIGDVAGEP--MLAHRAMAQGEMVAEII----AGKA  216 (220)
T ss_dssp             CCCT-TCB-CSSTTEEECGGGGCSS--CCHHHHHHHHHHHHHHH----TTCC
T ss_pred             cccc-hhh-cCCCCEEEEEEeCCcc--cchhhhhhhHHHHHHHH----cCCC
Confidence            9999 577 9999999999999864  58899999999999998    5654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.47  E-value=7.2e-14  Score=130.71  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=83.4

Q ss_pred             HHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhh------cCCCCCCCCceeeCccccccC
Q psy8791         276 LIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA------TSRLVDQSGYVNVDKATLQHV  349 (706)
Q Consensus       276 l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~------~~~l~~~~G~i~vd~~~l~~~  349 (706)
                      +...+|+++++.++.+++.+...+.+   ++|+++++|.+|||+|..|+....      ..++. .+|.|.||+ ++| |
T Consensus        65 ~~~~~i~~~~~~~v~~i~~~~~~~~~---~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~-~~~-t  138 (183)
T d1d7ya1          65 KRAPEVEWLLGVTAQSFDPQAHTVAL---SDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDA-YGR-T  138 (183)
T ss_dssp             GGSTTCEEEETCCEEEEETTTTEEEE---TTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCT-TCB-C
T ss_pred             hhcCCeEEEEeccccccccccceeEe---cCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEecc-cee-c
Confidence            44679999999999999988765544   488999999999999999974332      34553 345699999 688 8


Q ss_pred             CCCCEEEccccCCCCCC--------chHHHHHHhHHHHHHHHH
Q psy8791         350 KYSNVFAIGDCSNLPTS--------KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       350 ~~~~Ifa~GD~~~~~~~--------~~~~~a~~qg~~~a~ni~  384 (706)
                      +.|+|||+|||+..+.+        .++..|..||+.+|+||+
T Consensus       139 s~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil  181 (183)
T d1d7ya1         139 TCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV  181 (183)
T ss_dssp             SSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHc
Confidence            99999999999976542        368899999999999996

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=1.7e-13  Score=133.33  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=55.7

Q ss_pred             cEEEECCCCCchh---hhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         313 AIMHVTPPMGPVP---ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       313 D~vI~a~G~~~~~---~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      +..+.++|.+|+.   .+++.|+ ++++|+|.||+ +++ |+.|+|||+|||...+  .+++.|..+|..+|++|.
T Consensus       155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~-~~~-T~~~~v~A~GD~~~g~--~l~~~a~~~G~~aa~~i~  226 (233)
T d1v59a1         155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDD-QFN-SKFPHIKVVGDVTFGP--MLAHKAEEEGIAAVEMLK  226 (233)
T ss_dssp             EEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCT-TSB-CSSTTEEECGGGSSSC--CCHHHHHHHHHHHHHHHH
T ss_pred             cccceecccccCCCCcCchhcCeEEcCCCcEEECC-eEe-cCCCCEEEEcCCcccH--HHHHHHHHHHHHHHHHHc
Confidence            3344488888883   2455677 78999999999 688 9999999999999875  478889999999999995

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.42  E-value=1e-12  Score=128.38  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=63.5

Q ss_pred             CceEEeecEEEECCCCCchhh-----------hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHH
Q psy8791         306 KTERLPYAIMHVTPPMGPVPE-----------LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA  373 (706)
Q Consensus       306 ~g~~i~~D~vI~a~G~~~~~~-----------~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~  373 (706)
                      ..+.+++|.+++++|.+|...           +++.++ ++++|+|.||+ ++| |+.|+|||+|||+..+  .++..|.
T Consensus       146 ~~e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~-~~~-Ts~~~iyA~GDv~~~~--~~~~~A~  221 (240)
T d1feca1         146 VLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDA-YSK-TNVDNIYAIGDVTDRV--MLTPVAI  221 (240)
T ss_dssp             EEEEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCT-TCB-CSSTTEEECGGGGCSC--CCHHHHH
T ss_pred             ceEEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCc-ccC-cCCCCEEEEEECCCCc--cchhhHH
Confidence            346789999999999988732           445677 88999999999 677 9999999999998764  4778899


Q ss_pred             HhHHHHHHHHH
Q psy8791         374 GQCKVVYDNLS  384 (706)
Q Consensus       374 ~qg~~~a~ni~  384 (706)
                      .||+.+|+++.
T Consensus       222 ~eg~~aa~~~~  232 (240)
T d1feca1         222 NEGAAFVDTVF  232 (240)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999994

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=8e-12  Score=117.21  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh-----hhcCCCCCCCCceeeC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE-----LATSRLVDQSGYVNVD  342 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~-----~~~~~l~~~~G~i~vd  342 (706)
                      +.+.+...+.+.++++..+ .|.++...++...+..  ....++++.+++++|..|...     +....+.-++|+|.+|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~--~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~  140 (190)
T d1trba1          64 LMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNG--DNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQ  140 (190)
T ss_dssp             HHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEE--SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCC
T ss_pred             HHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEE--eeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEe
Confidence            3444555667778888776 5777776655433332  457889999999999876421     1222232356899998


Q ss_pred             cc----ccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         343 KA----TLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       343 ~~----~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      +.    +++ |+.|+|||+|||+..+ .+.+..|..+|..+|.++.++|..
T Consensus       141 ~~~~~~~~~-T~v~gV~aaGDv~~~~-~~q~i~Aag~G~~AA~~a~~yl~~  189 (190)
T d1trba1         141 SGIHGNATQ-TSIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAERYLDG  189 (190)
T ss_dssp             CSSSSCTTB-CSSTTEEECGGGGCSS-SCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCcccccc-cccCeEEEeEEecCcc-eeEEEEEeccHHHHHHHHHHHHhh
Confidence            51    334 8999999999998754 356777888999999999888753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.32  E-value=5.5e-12  Score=124.20  Aligned_cols=119  Identities=10%  Similarity=0.066  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCC--EEEEEeCCCceEEeecEEEECCCCCchh----------hhhcCCC-
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSEDKTERLPYAIMHVTPPMGPVP----------ELATSRL-  332 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~v~~~~~~~g~~i~~D~vI~a~G~~~~~----------~~~~~~l-  332 (706)
                      ..+.+.+.+.+++.||+++++++|++++..++  .+.+....+++++.||.||+|+|-.+-+          ++++.++ 
T Consensus       109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~  188 (253)
T d2gqfa1         109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (253)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccc
Confidence            56778888999999999999999999865332  2333333477899999999999966433          2333333 


Q ss_pred             -CCC----CCce---eeCccccccCCCCCEEEccccCCCCCC---chHHHHHHhHHHHHHHHH
Q psy8791         333 -VDQ----SGYV---NVDKATLQHVKYSNVFAIGDCSNLPTS---KTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       333 -~~~----~G~i---~vd~~~l~~~~~~~Ifa~GD~~~~~~~---~~~~~a~~qg~~~a~ni~  384 (706)
                       .++    .|.+   .+|+.||+....|++|.+|-+.++...   -.-+.|...|..+++.|.
T Consensus       189 i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~  251 (253)
T d2gqfa1         189 VIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSIS  251 (253)
T ss_dssp             EEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHh
Confidence             111    1222   256568888889999999988876432   234578889999998885

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.31  E-value=1.5e-11  Score=120.68  Aligned_cols=122  Identities=11%  Similarity=0.084  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh----------hhhcCCC-CC
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP----------ELATSRL-VD  334 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~----------~~~~~~l-~~  334 (706)
                      ..+.+.+.+.+++.||+++.+++|++|..+++.+..+.+++|+++.+|.||+|+|-..-+          ++++.+. ..
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~  189 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTIT  189 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeee
Confidence            467778888999999999999999999877676666666789999999999999975432          2333333 11


Q ss_pred             C--CCceee---CccccccCCCCCEEEccccCCCCCC---chHHHHHHhHHHHHHHHHHHH
Q psy8791         335 Q--SGYVNV---DKATLQHVKYSNVFAIGDCSNLPTS---KTAAAVAGQCKVVYDNLSAVM  387 (706)
Q Consensus       335 ~--~G~i~v---d~~~l~~~~~~~Ifa~GD~~~~~~~---~~~~~a~~qg~~~a~ni~~~l  387 (706)
                      .  .+.+.+   ++.++..+..|++|++|++......   .....|...|++++..+....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~~~~  250 (251)
T d2i0za1         190 ELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENA  250 (251)
T ss_dssp             EEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHHHhc
Confidence            0  111112   2223445678999999999765322   234567889999998886653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.2e-12  Score=123.33  Aligned_cols=140  Identities=22%  Similarity=0.310  Sum_probs=83.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCc-ceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQP-MFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~-~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +++++||||||++|+.+|.+|+++.+..+|++|+++++..|.. .+.                +.++.....-.....  
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls----------------~~~~~~~~~~~~~~~--   64 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLS----------------KELWFSDDPNVTKTL--   64 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGG----------------TGGGCC--CTHHHHC--
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccc----------------eecccccCchhhhhh--
Confidence            4678999999999999999999998888999999988776643 111                000000000000000  


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEe-ceEEEEEcCCCeEEcCCCcEEe
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVK-DKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~v~~id~~~~~V~~~~g~~i~  623 (706)
                           .+     +............+. .++.        .......+.+.||++.. .+|++||.+.++|+++||+++.
T Consensus        65 -----~~-----~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~  125 (213)
T d1m6ia1          65 -----RF-----KQWNGKERSIYFQPP-SFYV--------SAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQIT  125 (213)
T ss_dssp             -----EE-----ECTTSCEEESBSSCG-GGSB--------CTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEE
T ss_pred             -----hh-----hhcccchhhhhcCCh-hhhh--------hhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeec
Confidence                 00     000000000000000 0000        00111122236899854 5799999999999999999999


Q ss_pred             eCEEEEecCcccCccCCCC
Q psy8791         624 YEYMIVASGIQMYYDRVKG  642 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G  642 (706)
                      ||+||+|||+.|..+.+++
T Consensus       126 ~d~lViAtG~~~~~~~l~~  144 (213)
T d1m6ia1         126 YEKCLIATGGTEPNVELAK  144 (213)
T ss_dssp             EEEEEECCCEEEECCTTHH
T ss_pred             cceEEEeeeeecchhhhhh
Confidence            9999999999887665544

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.27  E-value=3.5e-12  Score=118.74  Aligned_cols=115  Identities=28%  Similarity=0.472  Sum_probs=84.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      ++|||||||++|+.+|..|++..++.+|+|||+++.+...+..                                     
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~-------------------------------------   45 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS-------------------------------------   45 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH-------------------------------------
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc-------------------------------------
Confidence            4899999999999999999999777899999987765422211                                     


Q ss_pred             CceEEEeeecceecCCCcccccCcccccccccccccccccchhhhccCCcEEEeceEEEEEcCCCeEEcCCCcEEeeCEE
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYM  627 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~yd~l  627 (706)
                                               +......................++++..+++..++...+.+.+.++++++||+|
T Consensus        46 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~l  100 (186)
T d1fcda1          46 -------------------------NEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRC  100 (186)
T ss_dssp             -------------------------HHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECCTTTTEEEETTSCEEECSEE
T ss_pred             -------------------------ccccchhhhhhhhhhhhhhccccceeEeeeeeEeeeeccceeecccceeeccceE
Confidence                                     0000011111111222222333578889999999999999999999999999999


Q ss_pred             EEecCcccCccCCCCch
Q psy8791         628 IVASGIQMYYDRVKGGT  644 (706)
Q Consensus       628 ViAtGs~~~~p~i~G~~  644 (706)
                      |+|||++++.+.+++..
T Consensus       101 i~atG~~~~~~~i~~~~  117 (186)
T d1fcda1         101 VVAPGIELIYDKIEQRA  117 (186)
T ss_dssp             EECCCEEECCTTSTEEE
T ss_pred             EEEeccccchhhhhhhh
Confidence            99999999988888754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=5.9e-13  Score=128.01  Aligned_cols=196  Identities=14%  Similarity=0.180  Sum_probs=107.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      |+|||+|||||+||++||.++++.  +.+|+|||++.           .||.|. +..+.|.+.+...+..+.....  +
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~~-----------~GGtc~-~~gc~p~k~l~~~a~~~~~~~~--~   64 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY--GQKCALIEAKE-----------LGGTCV-NVGCVPKKVMWHAAQIREAIHM--Y   64 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSC-----------TTHHHH-HHSHHHHHHHHHHHHHHHHHHT--T
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEeccC-----------cCCeEe-cccccccccchhhHHHHHHHHh--h
Confidence            579999999999999999999998  88999999853           144443 2334565555444322211000  0


Q ss_pred             CCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                      ...+.+.      .....      ..+..+.... ...+.+...+..++. .||+++.......+..  .+ ..+++.+.
T Consensus        65 ~~~~g~~------~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~--~~-~~~~~~~~  129 (217)
T d1gesa1          65 GPDYGFD------TTINK------FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAK--TL-EVNGETIT  129 (217)
T ss_dssp             GGGGTEE------EEEEE------ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETT--EE-EETTEEEE
T ss_pred             hhhcCcc------CCccc------ccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceee--ee-cCCCceee
Confidence            0000000      00000      0000000000 001111222333333 6899888776666543  23 23677899


Q ss_pred             eCEEEEecCcccCccCCCCchhh-hcccccccccccCc-cch-hhhccCccEEEE-----cHHHHHHHHHHHhhhhhh
Q psy8791         624 YEYMIVASGIQMYYDRVKGGTTS-LEDRGKMRGVSDGF-STV-TWEQKHKQYQLV-----SPEIRAKAYDLTKRKMKK  693 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~G~~~~-~~~~~~~~~~~~~~-~~~-~~~~~~k~vvVi-----G~E~A~~l~~~~~~~~~~  693 (706)
                      ++++++|||+.|.+|++|+.+.. +.. ..+......+ ... .....+++|.||     |+|+|..+.+++.++...
T Consensus       130 ~~~~iiatG~~p~ip~ip~~~~l~l~~-~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~~~  206 (217)
T d1gesa1         130 ADHILIATGGRPSHPREPANDNINLEA-AGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSER  206 (217)
T ss_dssp             EEEEEECCCEEECCCEEESCTTSCHHH-HTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHH
T ss_pred             eeeeeeecCccccCCCCCCcCCccccc-ccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876521 111 0000000000 001 112245689998     899999999988766433

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.23  E-value=2.2e-11  Score=113.39  Aligned_cols=106  Identities=13%  Similarity=0.283  Sum_probs=84.9

Q ss_pred             HHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch----hhhhcCCCCCCCCceeeCcccccc
Q psy8791         273 HDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV----PELATSRLVDQSGYVNVDKATLQH  348 (706)
Q Consensus       273 ~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~----~~~~~~~l~~~~G~i~vd~~~l~~  348 (706)
                      .......++.+..+..+..++.+...+..   .++.++++|.++|++|.+|+    ..+...++ ..+|.+.||+ ++| 
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~-~~~~~i~Vd~-~~~-  139 (185)
T d1q1ra1          66 PDAYAAQNIQLLGGTQVTAINRDRQQVIL---SDGRALDYDRLVLATGGRPLIPNCELASAAGL-QVDNGIVINE-HMQ-  139 (185)
T ss_dssp             HHHHHHTTEEEECSCCEEEEETTTTEEEE---TTSCEEECSEEEECCCEEEEEECCHHHHHTTC-CBSSSEECCT-TSB-
T ss_pred             hhhhcccceeeeccceeeeecccccEEEe---eceeEEEeeeeeeeeecccCCCCchhHHhCCc-cccCccccCC-ccc-
Confidence            45667788999999999999887765554   37789999999999998875    23344455 3457799998 788 


Q ss_pred             CCCCCEEEccccCCCCC--------CchHHHHHHhHHHHHHHHH
Q psy8791         349 VKYSNVFAIGDCSNLPT--------SKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       349 ~~~~~Ifa~GD~~~~~~--------~~~~~~a~~qg~~~a~ni~  384 (706)
                      |+.|+|||+|||+..+.        ..+++.|.+||+.+|+||.
T Consensus       140 ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~  183 (185)
T d1q1ra1         140 TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC  183 (185)
T ss_dssp             CSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhcchhhhccccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence            89999999999988753        2478999999999999983

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=4.8e-11  Score=114.33  Aligned_cols=106  Identities=19%  Similarity=0.259  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCch-hh--------hhcCCC-CCCCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV-PE--------LATSRL-VDQSG  337 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~--------~~~~~l-~~~~G  337 (706)
                      +...++..+++.||++..+........   ....    ++..+.++.+++++|..|. +.        +...++ .+++|
T Consensus        93 ~~~~~~~~l~~~gV~v~~~~~~~~~~~---~~~~----~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~  165 (217)
T d1gesa1          93 IHTSYENVLGKNNVDVIKGFARFVDAK---TLEV----NGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKG  165 (217)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEETT---EEEE----TTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTS
T ss_pred             HHHHHHHHHhCCeEEEEeeecccceee---eecC----CCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCc
Confidence            445566778889999988765433221   1221    6788999999999998765 21        222355 78899


Q ss_pred             ceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         338 YVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       338 ~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      ++.+|+ .++ |+.|+||++||+.....  .++.+..+|+.++.++.
T Consensus       166 ~i~~d~-~~~-t~~~~i~~iG~g~~g~e--la~~~~~~G~~v~~~~~  208 (217)
T d1gesa1         166 YIVVDK-YQN-TNIEGIYAVGDNTGAVE--LTPVAVAAGRRLSERLF  208 (217)
T ss_dssp             CBCCCT-TSB-CSSTTEEECSGGGTSCC--CHHHHHHHHHHHHHHHH
T ss_pred             cEeeCc-hhc-cCCCcEEEECCCccHHH--HHHHHHHHHHHHHHHHh
Confidence            999998 566 88899999999988643  77888999999998763

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2.4e-10  Score=106.19  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=79.9

Q ss_pred             HHHHHhCCceEEcCCceEEEeCCC--CEEEEEeCCCceEEeecEEEECCCCCch-hhhhcCCC-CCCCCceeeCcccccc
Q psy8791         273 HDILIGRGVDVHKGKALVEIDLAN--KEAVFKSEDKTERLPYAIMHVTPPMGPV-PELATSRL-VDQSGYVNVDKATLQH  348 (706)
Q Consensus       273 ~~~l~~~gV~v~~~~~v~~i~~~~--~~v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~~l-~~~~G~i~vd~~~l~~  348 (706)
                      ++..++.+++......+..+....  .........+..+++++.++.++|..++ ......++ ....|.+.||. .++ 
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~-~~~-  140 (184)
T d1fl2a1          63 KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDA-KCE-  140 (184)
T ss_dssp             HHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCT-TCB-
T ss_pred             HHHhhheeceeeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCC-cee-
Confidence            334455666777666666664322  1122222335678999999999998766 44444444 67789999998 566 


Q ss_pred             CCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         349 VKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       349 ~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      ++.|+||++|||...+. +....|..+|..+|.++..+|..
T Consensus       141 t~~~gv~a~gd~~~~~~-~~~vva~g~G~~aA~~~~~~l~~  180 (184)
T d1fl2a1         141 TNVKGVFAAGDCTTVPY-KQIIIATGEGAKASLSAFDYLIR  180 (184)
T ss_dssp             CSSTTEEECSTTBSCSS-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCEEEEeeecCccc-CCcEEEEECcHHHHHHHHHHHhh
Confidence            89999999999998764 35667888999999999887753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.17  E-value=1.1e-10  Score=118.49  Aligned_cols=107  Identities=9%  Similarity=0.150  Sum_probs=69.5

Q ss_pred             CCceEEcCCceEEEeCCCC--------EEEEEe--CCCceEEeecEEEECCCCCchhhhhc--CC--C----------CC
Q psy8791         279 RGVDVHKGKALVEIDLANK--------EAVFKS--EDKTERLPYAIMHVTPPMGPVPELAT--SR--L----------VD  334 (706)
Q Consensus       279 ~gV~v~~~~~v~~i~~~~~--------~v~~~~--~~~g~~i~~D~vI~a~G~~~~~~~~~--~~--l----------~~  334 (706)
                      .+.+++++++|++|..+..        .+....  ..+++++++|.||+|++...-..+..  .+  +          .+
T Consensus       242 ~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~  321 (373)
T d1seza1         242 REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHN  321 (373)
T ss_dssp             CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTT
T ss_pred             ccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccC
Confidence            3788999999999864332        122221  22567899999999987532211110  00  0          11


Q ss_pred             CCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCC
Q psy8791         335 QSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR  390 (706)
Q Consensus       335 ~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~  390 (706)
                      .++.+.+++ +++ ++.|+||++||+...+   +...|..+|..+|+.|.+.|+..
T Consensus       322 ~~~~~~~~~-~~~-t~~pglf~aGd~~~g~---~~~~A~~~G~~aA~~i~~~L~~~  372 (373)
T d1seza1         322 YDSVLDAID-KME-KNLPGLFYAGNHRGGL---SVGKALSSGCNAADLVISYLESV  372 (373)
T ss_dssp             HHHHHHHHH-HHH-HHSTTEEECCSSSSCS---SHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEeeccc-ccC-CCCCCEEEEecCCCch---hHHHHHHHHHHHHHHHHHHHhcC
Confidence            112222334 344 6789999999998753   56789999999999999999765

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.17  E-value=5.9e-11  Score=115.25  Aligned_cols=73  Identities=23%  Similarity=0.296  Sum_probs=58.6

Q ss_pred             eEEeecEEEECCCCCchhh-----------hhcCCCCCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhH
Q psy8791         308 ERLPYAIMHVTPPMGPVPE-----------LATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQC  376 (706)
Q Consensus       308 ~~i~~D~vI~a~G~~~~~~-----------~~~~~l~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg  376 (706)
                      +.+++|.++++++.+|...           +.+.++..++|+|.||+ ++| |+.|+|||+|||...+  .+...|..+|
T Consensus       148 ~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde-~~~-T~~~~iyAvGDv~~~~--~l~~~A~~eg  223 (238)
T d1aoga1         148 ERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDE-YSR-TNVSNIYAIGDVTNRV--MLTPVAINEA  223 (238)
T ss_dssp             EEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCT-TCB-CSSTTEEECGGGGTSC--CCHHHHHHHH
T ss_pred             ccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecC-Cee-eccCCEEEEEEecCCc--cchhhHHHHH
Confidence            5677888888777766411           23457766789999999 687 9999999999998864  5778899999


Q ss_pred             HHHHHHHH
Q psy8791         377 KVVYDNLS  384 (706)
Q Consensus       377 ~~~a~ni~  384 (706)
                      +.+|++|.
T Consensus       224 ~~aa~~i~  231 (238)
T d1aoga1         224 AALVDTVF  231 (238)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999994

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.16  E-value=4.1e-11  Score=105.30  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=98.0

Q ss_pred             ChhHHHHHHHHHHhcc-CCCEEEecCCCCeeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHH
Q psy8791         197 SPQYVEKTLRNLQHFQ-SGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIH  273 (706)
Q Consensus       197 ~~~~~~~~~~~l~~~~-~g~~vv~~~~~~v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~  273 (706)
                      ....+..++++|.+++ ||++|++.++.++.|+|+|++++++++++++++|.++++.+++.++.+..++  .+.+.+.+.
T Consensus        16 ~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~   95 (141)
T d1fcda2          16 AGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYG   95 (141)
T ss_dssp             CSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHH
Confidence            3456789999999997 5689999999999999999999999999999999999877777776665554  244566677


Q ss_pred             HHHHhCCceEEcCC--ceEEEeCCCCEEEEEeCCCceEEeecEEEECCC
Q psy8791         274 DILIGRGVDVHKGK--ALVEIDLANKEAVFKSEDKTERLPYAIMHVTPP  320 (706)
Q Consensus       274 ~~l~~~gV~v~~~~--~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G  320 (706)
                      +.++++||+++.+.  .+.+++...+.+.+   .+|+++++|++++.++
T Consensus        96 ~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~---~~Ge~v~yD~l~vvPP  141 (141)
T d1fcda2          96 FGTENAMIEWHPGPDSAVVKVDGGEMMVET---AFGDEFKADVINLIPP  141 (141)
T ss_dssp             STTSSCSEEEECSSTTCEEEEEETTTEEEE---TTCCEEECSEEEECCC
T ss_pred             HHHHhcCceeeecCCceEEeecCCcEEEEe---CCCcEEeeeEEEeCCC
Confidence            77788999999875  47788877765554   3789999999998763

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.15  E-value=1e-12  Score=130.06  Aligned_cols=146  Identities=13%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc-cccC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI-VSFD  546 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  546 (706)
                      ||++|||||+||+.||.++++.  +.+|+|||++.           .||.| ++..|.|.|.|+.+......... ..++
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~--G~~V~liE~~~-----------~GGtc-~n~gciPsK~l~~~~~~~~~~~~~~~~G   67 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH--NAKVALVEKSR-----------LGGTC-VNVGCVPKKIMFNAASVHDILENSRHYG   67 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSS-----------TTHHH-HHTSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC-----------CCCeE-EeeCCcchHHHHhhhhcccchhcccccc
Confidence            7999999999999999999998  89999999743           24544 45566888888776543322111 0110


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcC-------
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQ-------  617 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~-------  617 (706)
                        ++.           ...    ..++.+... ......+...+...++ .||+++.+++.++++..-.|...       
T Consensus        68 --~~~-----------~~~----~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~  130 (259)
T d1onfa1          68 --FDT-----------KFS----FNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKD  130 (259)
T ss_dssp             --CCC-----------CCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC-----------------
T ss_pred             --ccc-----------hhh----hhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccc
Confidence              000           000    001100000 0011112222333333 69999999888877654433221       


Q ss_pred             ----CCcEEeeCEEEEecCcccC--ccCCCCch
Q psy8791         618 ----AGSEISYEYMIVASGIQMY--YDRVKGGT  644 (706)
Q Consensus       618 ----~g~~i~yd~lViAtGs~~~--~p~i~G~~  644 (706)
                          +++.+++|++|||||++|.  .+.+|++.
T Consensus       131 ~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~~  163 (259)
T d1onfa1         131 NGPLNEEILEGRNILIAVGNKPVGRSPDTENLK  163 (259)
T ss_dssp             ---------CBSSEEECCCCCBCCBCCTTTTSS
T ss_pred             cCccceEEEeeeeEEEecCCCCccccccccccc
Confidence                2356999999999999994  23455543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=5.4e-12  Score=115.63  Aligned_cols=105  Identities=20%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccc-ccCCCcEEEEce
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDK  104 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~  104 (706)
                      +....++|+|||||+|||+||..|+++  |++|+|||+.+....+..+.....+......+...+.+ +...++++..++
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~  116 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNH  116 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESC
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhh--ccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCC
Confidence            455678999999999999999999999  99999999999765443322222222222222222222 223578876643


Q ss_pred             eEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCC
Q psy8791         105 IVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG  143 (706)
Q Consensus       105 v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g  143 (706)
                      ..         +. + ....||.+|+|||+.++.+.+||
T Consensus       117 ~V---------t~-~-~~~~~d~vilAtG~~~~~~~~pg  144 (179)
T d1ps9a3         117 TV---------TA-D-QLQAFDETILASGIPNRALAQPL  144 (179)
T ss_dssp             CC---------CS-S-SSCCSSEEEECCCEECCTTHHHH
T ss_pred             EE---------cc-c-ccccceeEEEeecCCCcccccch
Confidence            21         11 1 13579999999999887766666

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.05  E-value=3.1e-10  Score=113.10  Aligned_cols=101  Identities=13%  Similarity=0.038  Sum_probs=72.6

Q ss_pred             EEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCC
Q psy8791         252 KLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSR  331 (706)
Q Consensus       252 ~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~  331 (706)
                      ...+..+......+..+...+.+.+++.|++++.+++|.+|+.+++.+.+. +++| ++.||.||+|+|.+.+.++...|
T Consensus       136 ~~~~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~-t~~g-~i~a~~VViAaG~~s~~l~~~lg  213 (281)
T d2gf3a1         136 YNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIE-TANG-SYTADKLIVSMGAWNSKLLSKLN  213 (281)
T ss_dssp             EEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEE-ETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             ceeeeccccccccccccccccccccccccccccCCcEEEEEEEECCEEEEE-ECCc-EEEcCEEEECCCCcchhhHHhcC
Confidence            345555555444567888899999999999999999999999877766554 4444 69999999999999998888888


Q ss_pred             CCCCCCceeeCccccccCCCCCEEE-cc
Q psy8791         332 LVDQSGYVNVDKATLQHVKYSNVFA-IG  358 (706)
Q Consensus       332 l~~~~G~i~vd~~~l~~~~~~~Ifa-~G  358 (706)
                      +..+.....+..   . +..++++. .|
T Consensus       214 ~~~~~~~~~~~~---~-P~~~~~~~~~g  237 (281)
T d2gf3a1         214 LDIPDEHFIIDL---H-PEHSNVVIAAG  237 (281)
T ss_dssp             EECCTSCCEEEE---E-TTEEEEEEEEC
T ss_pred             Cccccccceecc---c-cCCCCEEEEec
Confidence            744433333332   1 33456544 44

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.01  E-value=2.4e-10  Score=107.54  Aligned_cols=109  Identities=16%  Similarity=0.265  Sum_probs=74.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      |||+|||||++|+.+|..|++..++.+|+++++++...|.+..                                     
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~-------------------------------------   43 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAG-------------------------------------   43 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGG-------------------------------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccC-------------------------------------
Confidence            4799999999999999999999888899999987765433210                                     


Q ss_pred             CceEEEeeecceecCCCcccccCccccc-ccccccccccccch-hhhccCCcEE-EeceEEEEEcCCCeEEc---CCCc-
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLI-GGGMKKLSDSRRPM-KSVLPSGATW-VKDKIVSFDPENNRVRT---QAGS-  620 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~gv~~-~~~~v~~id~~~~~V~~---~~g~-  620 (706)
                                              .+.+ .......+++.... ..+.+.|+++ .+.+|.+||+++++|++   .+|+ 
T Consensus        44 ------------------------~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~   99 (198)
T d1nhpa1          44 ------------------------MQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEE   99 (198)
T ss_dssp             ------------------------HHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCE
T ss_pred             ------------------------cchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccc
Confidence                                    0000 00011111122211 2223368998 56789999999988764   3443 


Q ss_pred             -EEeeCEEEEecCcccCc
Q psy8791         621 -EISYEYMIVASGIQMYY  637 (706)
Q Consensus       621 -~i~yd~lViAtGs~~~~  637 (706)
                       ++.||+||+|+|+.+..
T Consensus       100 ~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1         100 RVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             EEEECSEEEECCCEEECC
T ss_pred             cccccceeeEeecceeec
Confidence             57999999999998763

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.01  E-value=5.2e-10  Score=95.59  Aligned_cols=90  Identities=21%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccc-ccccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~-~~v~~  107 (706)
                      .++|+|||||+.|+-+|..|+++  +.+|||||+.++....         ..+ +.....+ +.+.+.+++++. .+|++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~~l~~---------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~   97 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTA--GVHVSLVETQPRLMSR---------AAP-ATLADFVARYHAAQGVDLRFERSVTG   97 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTTTT---------TSC-HHHHHHHHHHHHTTTCEEEESCCEEE
T ss_pred             CCeEEEECcchhHHHHHHHhhcc--cceEEEEeeccccccc---------cCC-HHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence            47899999999999999999999  9999999999963211         111 1111122 233457999876 57777


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEccc
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG  133 (706)
                      +..  ..+.++||+++++|.+|+|+|
T Consensus        98 ~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          98 SVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             EET--TEEEETTSCEEECSEEEECSC
T ss_pred             EeC--CEEEECCCCEEECCEEEEeeC
Confidence            764  468899999999999999998

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.98  E-value=1.6e-09  Score=107.53  Aligned_cols=101  Identities=10%  Similarity=0.048  Sum_probs=73.6

Q ss_pred             EEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC
Q psy8791         253 LTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL  332 (706)
Q Consensus       253 v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l  332 (706)
                      -.++.+......+..+...+.+.+++.|++++.+++|++|+.+++.+.+ .+++| ++.||.||+|+|.+.+.++...|+
T Consensus       138 g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V-~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~  215 (276)
T d1ryia1         138 GASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFI-KTPSG-DVWANHVVVASGVWSGMFFKQLGL  215 (276)
T ss_dssp             EEEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEE-EETTE-EEEEEEEEECCGGGTHHHHHHTTC
T ss_pred             EEEEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEE-ecCCe-EEEcCEEEECCCccHHHHHhhcCC
Confidence            3444555545556778888899999999999999999999987664444 34444 799999999999999999999998


Q ss_pred             CCCCCceeeCccccccCCCCCEE-Eccc
Q psy8791         333 VDQSGYVNVDKATLQHVKYSNVF-AIGD  359 (706)
Q Consensus       333 ~~~~G~i~vd~~~l~~~~~~~If-a~GD  359 (706)
                      ...++...+..    .+..+++| +.|.
T Consensus       216 ~~~~~~p~~~~----~p~~~~~~~~~g~  239 (276)
T d1ryia1         216 NNADGKPYIGR----HPEDSRILFAAGH  239 (276)
T ss_dssp             CCCSSCCEEEE----ETTEEEEEEEECC
T ss_pred             Ccccccceecc----ccCCCCEEECCCC
Confidence            66666544333    23445655 5564

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.97  E-value=4.3e-11  Score=121.05  Aligned_cols=111  Identities=12%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeCCCceEEeecEEEECCCCCch-hhhhcC---------CCCCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSEDKTERLPYAIMHVTPPMGPV-PELATS---------RLVDQ  335 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g~~i~~D~vI~a~G~~~~-~~~~~~---------~l~~~  335 (706)
                      +...+++..++.|++++++++|++|+.+++.  ++....++.++++||.||+|+|.... ..+.+.         ++ ..
T Consensus       221 ~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~-~~  299 (347)
T d2ivda1         221 LQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGI-YN  299 (347)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTC-CB
T ss_pred             hHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcc-ee
Confidence            4455556666679999999999999876654  44433333467999999999985322 222211         11 11


Q ss_pred             CCce---eeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHH
Q psy8791         336 SGYV---NVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLS  384 (706)
Q Consensus       336 ~G~i---~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~  384 (706)
                      .|..   ...+  ...++.|++|++||.....   ....+..+|..+|+.|.
T Consensus       300 ~~~~~~~~~~~--~~~~~~p~~~~~G~~~~g~---~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         300 LGHLERVAAID--AALQRLPGLHLIGNAYKGV---GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             TTHHHHHHHHH--HHHHTSTTEEECSTTTSCC---SHHHHHHHHHHHHHHHC
T ss_pred             cCcccceeccc--ccccCCCCEEEecccccCC---CHHHHHHHHHHHHHHhh
Confidence            2211   1112  2346899999999987643   34457889999888874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=4.9e-10  Score=95.18  Aligned_cols=91  Identities=14%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccc-ccccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~-~~v~~  107 (706)
                      .++|+|||||+.|+.+|..|++.  |.+|||+++.+...  |.        .+ ..+...+ +.+.+.+++++. ..|+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~~l--~~--------~d-~~~~~~~~~~l~~~GV~~~~~~~v~~   87 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFDAPL--PS--------FD-PMISETLVEVMNAEGPQLHTNAIPKA   87 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSS--TT--------SC-HHHHHHHHHHHHHHSCEEECSCCEEE
T ss_pred             CCEEEEECCChhhHHHHHHhhcc--ccEEEEEeecchhh--hh--------cc-hhhHHHHHHHHHHCCCEEEeCCEEEE
Confidence            46899999999999999999998  89999999998632  11        11 1122222 233347899987 57778


Q ss_pred             EEcCCC---EEEeCCCeEEEecEEEEccc
Q psy8791         108 FDPENN---RVRTQAGSEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~~---~v~~~~g~~~~yd~lviAtG  133 (706)
                      +..+..   ++.+++|+++++|.+++|+|
T Consensus        88 i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          88 VVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            876543   67889999999999999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.94  E-value=2.5e-09  Score=99.08  Aligned_cols=107  Identities=20%  Similarity=0.324  Sum_probs=74.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccccccCccccCcccccccccccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRRPMKSVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~v~~  107 (706)
                      +.+|||||||++|+.+|..|++......|+++++.....|. |.+..........+.+.  .......+++++. .+++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~v~~   80 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR--LDCKRAPEVEWLLGVTAQS   80 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSB--CCGGGSTTCEEEETCCEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHH--HHHhhcCCeEEEEeccccc
Confidence            45799999999999999999998444566666666554333 22221111111111111  1122346888887 58899


Q ss_pred             EEcCCCEEEeCCCeEEEecEEEEcccccccc
Q psy8791         108 FDPENNRVRTQAGSEISYEYMIVASGIQMYY  138 (706)
Q Consensus       108 id~~~~~v~~~~g~~~~yd~lviAtG~~~~~  138 (706)
                      ++.+...+.+++|++++||++++|+|..++.
T Consensus        81 i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          81 FDPQAHTVALSDGRTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             cccccceeEecCCcEeeeeeEEEEEEEEccc
Confidence            9999999999999999999999999988764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.94  E-value=7.9e-10  Score=111.55  Aligned_cols=78  Identities=9%  Similarity=-0.043  Sum_probs=63.8

Q ss_pred             EEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcCCC
Q psy8791         254 TYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRL  332 (706)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~~l  332 (706)
                      .++.+......+..+...+.+.+++.|++++.+++|+++..++++++.+.+++| +++||.||+|+|.+.+.++...|+
T Consensus       136 ~~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~  213 (305)
T d1pj5a2         136 GLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGM  213 (305)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTC
T ss_pred             ceecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCC
Confidence            444455555556788888999999999999999999999988887776666555 799999999999999888887766

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.93  E-value=1.7e-10  Score=113.22  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |.+++||+|||||+||+.||..|+++  +.+|+|||+++..
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~--G~~V~vlEk~~~~   39 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKI   39 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            34678999999999999999999998  8899999998764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.92  E-value=7.4e-10  Score=96.43  Aligned_cols=92  Identities=16%  Similarity=0.296  Sum_probs=68.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccc-cCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~-~~v~~  107 (706)
                      .++|+|||||+.|+.+|..|++.  +.+|+|||++++..-         ... .+.+...+.+. ...+++++. .+|+.
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~--g~~Vtvie~~~~~l~---------~~~-~~~~~~~~~~~~~~~GV~i~~~~~v~~  102 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKA--NMHVTLLDTAARVLE---------RVT-APPVSAFYEHLHREAGVDIRTGTQVCG  102 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTT---------TTS-CHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhh--Ccceeeeeecccccc---------ccc-chhhhhhhhhcccccccEEEeCCeEEE
Confidence            57999999999999999999999  999999999996321         001 11122222233 347899987 57888


Q ss_pred             EEcCC--C---EEEeCCCeEEEecEEEEccc
Q psy8791         108 FDPEN--N---RVRTQAGSEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~--~---~v~~~~g~~~~yd~lviAtG  133 (706)
                      |+...  .   .+.+++|+++++|.+|+|+|
T Consensus       103 i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         103 FEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            87543  2   47789999999999999998

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.6e-10  Score=105.61  Aligned_cols=37  Identities=32%  Similarity=0.478  Sum_probs=33.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +.++|+|||||+||++||..|+++  +++|+|+|+.+..
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEI   78 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhh--ccceEEEeccCcc
Confidence            457899999999999999999998  8999999997754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=4.8e-09  Score=89.77  Aligned_cols=73  Identities=11%  Similarity=0.092  Sum_probs=61.7

Q ss_pred             HHHHHHcCCCCCcEEEEEeCCCcCCC-chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEE
Q psy8791         239 DEYLRKHKKRDAAKLTYCTGMGVLFP-SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHV  317 (706)
Q Consensus       239 ~~~l~~~g~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~  317 (706)
                      +..+.+.|.    +|+++++.+.+++ ++++.+.+++.|+++||++++++.+.+++.++  +..    +++++++|+|||
T Consensus        48 A~~l~~~g~----~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~--v~~----~~~~i~~D~vi~  117 (122)
T d1xhca2          48 AGNLAEAGY----HVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG--VLT----NSGFIEGKVKIC  117 (122)
T ss_dssp             HHHHHHTTC----EEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSE--EEE----TTEEEECSCEEE
T ss_pred             HHHhhcccc----eEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE--EEe----CCCEEECCEEEE
Confidence            344666764    5999999998887 78999999999999999999999999997654  322    778999999999


Q ss_pred             CCCC
Q psy8791         318 TPPM  321 (706)
Q Consensus       318 a~G~  321 (706)
                      |+|.
T Consensus       118 a~Gv  121 (122)
T d1xhca2         118 AIGI  121 (122)
T ss_dssp             ECCE
T ss_pred             EEEe
Confidence            9995

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.91  E-value=1.4e-09  Score=99.03  Aligned_cols=102  Identities=20%  Similarity=0.319  Sum_probs=72.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC-cccccccCccccCccccccccccc-CCCcEEEE-ceeEEE
Q psy8791          32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ-PMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVK-DKIVSF  108 (706)
Q Consensus        32 ~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~-~~v~~i  108 (706)
                      ||||||||++|+.+|..|++   +.+|||+++.+...+. |.+.....+....+.+.....++. ..+++++. .+|+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc---CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999976   4799999999876665 334443333333333322222222 36788876 578899


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEccccccc
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                      |...+.+.. ++.++.||++++|+|..+.
T Consensus        79 ~~~~~~~~~-~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          79 DRGRKVVIT-EKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             ETTTTEEEE-SSCEEECSEEEECCCEECC
T ss_pred             ccccccccc-cccccccceeEEEEEecCC
Confidence            987766554 4558999999999997653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.90  E-value=4.4e-11  Score=122.95  Aligned_cols=109  Identities=7%  Similarity=0.057  Sum_probs=69.1

Q ss_pred             HHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe---CCCceEEeecEEEECCCCCchhhhhcC----CC-----------
Q psy8791         271 KIHDILIGRGVDVHKGKALVEIDLANKEAVFKS---EDKTERLPYAIMHVTPPMGPVPELATS----RL-----------  332 (706)
Q Consensus       271 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~---~~~g~~i~~D~vI~a~G~~~~~~~~~~----~l-----------  332 (706)
                      ..+..+++.|++++++++|++|+.+++.+++..   ..++++++||.||+|++..   .+...    .+           
T Consensus       240 l~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~---~l~~i~~~p~l~~~~~~ai~~~  316 (370)
T d2iida1         240 LPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR---AVRLIKFNPPLLPKKAHALRSV  316 (370)
T ss_dssp             HHHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH---HHTTSEEESCCCHHHHHHHHHC
T ss_pred             HHHHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHH---HHhhCccCCCCCHHHHHHHHhc
Confidence            344556778999999999999987776554322   2356789999999998632   22111    11           


Q ss_pred             CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHH
Q psy8791         333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSA  385 (706)
Q Consensus       333 ~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~  385 (706)
                      ..+..+....+ .+. ....+||++||++..+. .....|+..|..+|.+|..
T Consensus       317 ~~~~~~~~~~~-~~~-~~~g~v~~aGd~~~~~~-~~~~~a~~sG~~aA~~i~~  366 (370)
T d2iida1         317 FTPYQFQHFSD-PLT-ASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNL  366 (370)
T ss_dssp             CCTTHHHHHHH-HHH-CCBTTEEECSGGGSSSS-SCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccch-hhh-cccCCEEEecccccCCC-cccHHHHHHHHHHHHHHHh
Confidence            01111111112 122 23457999999887652 3356789999999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.89  E-value=1.7e-11  Score=118.89  Aligned_cols=37  Identities=16%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..++|+|||||+||+++|..|+++  +.+++|+|+++..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~~   84 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKI   84 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSST
T ss_pred             CCceEEEEcccHHHHHHHHHHHHh--ccceeeEeecccc
Confidence            457899999999999999999998  8999999987754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.88  E-value=5.7e-09  Score=103.09  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=76.5

Q ss_pred             HHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhh-hhc--CCC-------CCCCCceeeCc--
Q psy8791         276 LIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE-LAT--SRL-------VDQSGYVNVDK--  343 (706)
Q Consensus       276 l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~-~~~--~~l-------~~~~G~i~vd~--  343 (706)
                      .+..+..+..++.+..+...+..+.+ .+.+|+.+++|.++++.+...... ...  -.+       ....++..++.  
T Consensus       220 ~~~~~~~i~~~~~v~~i~~~~~~v~v-~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~  298 (347)
T d1b5qa1         220 GKIVDPRLQLNKVVREIKYSPGGVTV-KTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYE  298 (347)
T ss_dssp             CCBCCTTEESSCCEEEEEECSSCEEE-EETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHH
T ss_pred             hhhcccccccccccccccccCccEEE-EECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccc
Confidence            34567889999999999877766654 355889999999999875422100 000  001       11223333332  


Q ss_pred             -cccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         344 -ATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       344 -~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                       ..++ ++.++||++||++....|..++.|..+|..+|+.|+..++.
T Consensus       299 ~~~~~-~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         299 YDQLR-APVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             HHHHH-CCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcc-cccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence             1233 56789999999998767778888999999999999988764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.87  E-value=5.6e-09  Score=104.26  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHhCCc--eEEcCCceEEEe--CCCCEEEEEeCCCceEEeecEEEECCCCCchh---hhhcCCCCCCCCc
Q psy8791         266 PFYAEKIHDILIGRGV--DVHKGKALVEID--LANKEAVFKSEDKTERLPYAIMHVTPPMGPVP---ELATSRLVDQSGY  338 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV--~v~~~~~v~~i~--~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~---~~~~~~l~~~~G~  338 (706)
                      +.+.+++++..++.++  .++++++|+++.  .+.+. ..+.+.+++++.+|.+|.|+|+...+   .+....+...+|.
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~-W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~  163 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT-WTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNV  163 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTE-EEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGC
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCc-eeeccccccccccceEEEeecccccccCCcccccccccCCCe
Confidence            5678888888888888  599999999986  33332 22344578899999999999975442   2222221222221


Q ss_pred             ---------eeeCccccccCCCCCEEEcc-ccCCCCCCchHHHHHHhHHHHHHHHHHHHc
Q psy8791         339 ---------VNVDKATLQHVKYSNVFAIG-DCSNLPTSKTAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       339 ---------i~vd~~~l~~~~~~~Ifa~G-D~~~~~~~~~~~~a~~qg~~~a~ni~~~l~  388 (706)
                               ...-. .+.+.++||.|.++ --+..........+..|++++++.|.....
T Consensus       164 ~l~~~W~~~p~ty~-G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~~  222 (298)
T d1w4xa1         164 ALKEKWAAGPRTYL-GLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFK  222 (298)
T ss_dssp             BHHHHTTTSCCCBT-TTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhchhhHHHHH-HHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHHh
Confidence                     11111 35567899999984 222211112334567888888887766543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.85  E-value=8.5e-09  Score=87.83  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=61.3

Q ss_pred             HHHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEE
Q psy8791         240 EYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMH  316 (706)
Q Consensus       240 ~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI  316 (706)
                      ..++++|.    +|+++++.+.+++   ++.+++.+++.|+++||++++++.|+++..+  .+++   +||++++||+||
T Consensus        47 ~~l~~~g~----~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~--~v~l---~dg~~i~~D~vi  117 (121)
T d1d7ya2          47 ATARTAGV----HVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG--VVLL---DDGTRIAADMVV  117 (121)
T ss_dssp             HHHHHTTC----EEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETT--EEEE---TTSCEEECSEEE
T ss_pred             HHhhcccc----eEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC--EEEE---CCCCEEECCEEE
Confidence            45666664    5999999999886   6899999999999999999999999998764  3443   489999999999


Q ss_pred             ECCC
Q psy8791         317 VTPP  320 (706)
Q Consensus       317 ~a~G  320 (706)
                      +|+|
T Consensus       118 ~a~G  121 (121)
T d1d7ya2         118 VGIG  121 (121)
T ss_dssp             ECSC
T ss_pred             EeeC
Confidence            9998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.85  E-value=5.3e-10  Score=111.90  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=32.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..||+|||||++||++|++|++.  +.+++|+|+++..
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~--G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLREL--GRSVHVIETAGDV   42 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhC--CCCEEEEEcCCCc
Confidence            57999999999999999999987  7899999997764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.9e-08  Score=87.91  Aligned_cols=111  Identities=5%  Similarity=-0.011  Sum_probs=79.2

Q ss_pred             CChhHHHHHHHHHHhccCCCEEEecCCCCeeeCChhH--HHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC---chhHHH
Q psy8791         196 YSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPM--KAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAE  270 (706)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~g~~vv~~~~~~v~~~g~~~--~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~  270 (706)
                      .+.+++.++.+.+...   +.+       +.++|++.  |++.......+..|.    +|+++++.+.+++   ++++.+
T Consensus        22 r~~~d~~~l~~~~~~~---k~i-------~IvGgG~~G~E~A~~l~~~~~~~g~----~Vt~i~~~~~~l~~~~~~~~~~   87 (137)
T d1m6ia2          22 RKIGDFRSLEKISREV---KSI-------TIIGGGFLGSELACALGRKARALGT----EVIQLFPEKGNMGKILPEYLSN   87 (137)
T ss_dssp             CSHHHHHHHHHHHHHC---SEE-------EEECCSHHHHHHHHHHHHHHHHHTC----EEEEECSSSSTTTTTSCHHHHH
T ss_pred             cCHHHHHHHHHHhhcC---CEE-------EEECCCHHHHHHHHHHHHHHHhcCC----EEEEecccccCCcccCCHHHHH
Confidence            3455566555555432   222       22344432  344444444455553    5999999998875   688999


Q ss_pred             HHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC
Q psy8791         271 KIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM  321 (706)
Q Consensus       271 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~  321 (706)
                      .+.+.|+++||++++++.|++++.+++.+.+ .+++|+++++|+||||+|+
T Consensus        88 ~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v-~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          88 WTMEKVRREGVKVMPNAIVQSVGVSSGKLLI-KLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHHTTTCEEECSCCEEEEEEETTEEEE-EETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHhCCcEEEeCCEEEEEEecCCEEEE-EECCCCEEECCEEEEeecC
Confidence            9999999999999999999999887766654 4568999999999999994

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=112.37  Aligned_cols=119  Identities=10%  Similarity=0.011  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchh----------hhhc-CCCCCCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP----------ELAT-SRLVDQS  336 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~----------~~~~-~~l~~~~  336 (706)
                      .....+..+++.|++++++++|.+|..+++.+.+ .+.+|++++||.||+|++...-.          ...+ ..-....
T Consensus       209 ~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v-~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~  287 (383)
T d2v5za1         209 SGQVSERIMDLLGDRVKLERPVIYIDQTRENVLV-ETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPP  287 (383)
T ss_dssp             THHHHHHHHHHHGGGEEESCCEEEEECSSSSEEE-EETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCT
T ss_pred             hhHHHHHHHHHcCCeEEecCcceEEEecCCeEEE-EECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccC
Confidence            3444555667789999999999999988777765 45588999999999998642111          0000 0001112


Q ss_pred             Cce-eeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcC
Q psy8791         337 GYV-NVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN  389 (706)
Q Consensus       337 G~i-~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g  389 (706)
                      |.. ....  .......+|+.+|+......+.....|..+|+.+|..|...+..
T Consensus       288 ~~~~~~~~--~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~~~  339 (383)
T d2v5za1         288 GILTQYGR--VLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGK  339 (383)
T ss_dssp             THHHHHGG--GTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             Cccchhhh--hhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            211 1111  12234567999998766544555667889999999999877643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.81  E-value=4.1e-09  Score=107.73  Aligned_cols=41  Identities=17%  Similarity=0.283  Sum_probs=34.8

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHY  505 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~  505 (706)
                      ..|++|+|||||+||++||..|++.....+|+|+|+++...
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG   42 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   42 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            45789999999999999999998874346999999988653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.79  E-value=5.8e-10  Score=107.79  Aligned_cols=118  Identities=11%  Similarity=0.111  Sum_probs=68.9

Q ss_pred             ccccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccc----ccccccc
Q psy8791          18 SFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDS----RRPMKSV   93 (706)
Q Consensus        18 ~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~   93 (706)
                      .+.+....++...++|+|||||+|||+||.+|+++  |++|+|+|+++....+........+.......    ...+..+
T Consensus        37 ~~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (233)
T d1djqa3          37 GWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKL  114 (233)
T ss_dssp             CCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHH
T ss_pred             CCCCCccCcccCCceEEEEcccHHHHHHHHHHHHh--ccceeeEeeccccCCccccccccceeecccccchhHHHHHHHH
Confidence            34444555666778999999999999999999999  99999999999754332211111111111110    0011111


Q ss_pred             cCCCcEEEEceeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCC
Q psy8791          94 LPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG  143 (706)
Q Consensus        94 ~~~~v~~i~~~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g  143 (706)
                      ...++.      ..++...+.+...+..++.||++|+|||+.+..+.+++
T Consensus       115 ~~~~~~------~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~  158 (233)
T d1djqa3         115 LKKNKE------SQLALGQKPMTADDVLQYGADKVIIATGASECTLWNEL  158 (233)
T ss_dssp             HTTCTT------CEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHH
T ss_pred             hhccee------eeeecccccccchhhhhhccceeeeccCCCcccccccc
Confidence            111111      12233333344434445789999999999876554443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.79  E-value=1.7e-07  Score=94.69  Aligned_cols=120  Identities=13%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CE---EEEEeCCCc-eEEeecEEEECCCCC-chhhh-h---------
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KE---AVFKSEDKT-ERLPYAIMHVTPPMG-PVPEL-A---------  328 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~---v~~~~~~~g-~~i~~D~vI~a~G~~-~~~~~-~---------  328 (706)
                      ...+...+.+.+.++|+++++++++.++..++ ++   +.....+++ ..+.++.||+|+|-- .|..+ .         
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~  230 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF  230 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccc
Confidence            35677778888889999999999999986543 33   333322222 358999999999832 22110 0         


Q ss_pred             -----------------cCC----------C-CCCCCceeeCccccccCCCCCEEEccccCCCC--CC----chHHHHHH
Q psy8791         329 -----------------TSR----------L-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP--TS----KTAAAVAG  374 (706)
Q Consensus       329 -----------------~~~----------l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~--~~----~~~~~a~~  374 (706)
                                       ..|          + .+..+.+..+.   .-+..|++||+|+|+..-  ..    .....+.-
T Consensus       231 ~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~~---~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v  307 (322)
T d1d4ca2         231 KATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKSEK---TGKPITGLYAAGEVTGGVHGANRLGGNAISDIVT  307 (322)
T ss_dssp             CBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEBTT---TSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHH
T ss_pred             cccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEECC---CCCEeCceEEchhhcCCccccccchhhHHHHHHH
Confidence                             001          1 23344444333   125679999999997431  11    12344556


Q ss_pred             hHHHHHHHHHHHH
Q psy8791         375 QCKVVYDNLSAVM  387 (706)
Q Consensus       375 qg~~~a~ni~~~l  387 (706)
                      .|+.++++++...
T Consensus       308 ~g~~ag~~aa~~~  320 (322)
T d1d4ca2         308 YGRIAGASAAKFA  320 (322)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6888888887664

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.3e-08  Score=86.07  Aligned_cols=78  Identities=8%  Similarity=0.077  Sum_probs=65.0

Q ss_pred             HHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-EEEEEeCCCceEEeecE
Q psy8791         238 GDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-EAVFKSEDKTERLPYAI  314 (706)
Q Consensus       238 ~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~v~~~~~~~g~~i~~D~  314 (706)
                      .+..+++.|.    +|+++++.+++++  ++.+.+.+++.|+++||++++++.|+++..+++ .+.+ .+++|+++++|+
T Consensus        36 ~A~~l~~~G~----~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~D~  110 (116)
T d1gesa2          36 LGGVINGLGA----KTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDGRSETVDC  110 (116)
T ss_dssp             HHHHHHHTTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEE-EETTSCEEEESE
T ss_pred             HHHHhhcccc----EEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEE-EECCCCEEEcCE
Confidence            3345677774    5999999999987  789999999999999999999999999986543 3433 455889999999


Q ss_pred             EEECCC
Q psy8791         315 MHVTPP  320 (706)
Q Consensus       315 vI~a~G  320 (706)
                      ||||+|
T Consensus       111 vi~a~G  116 (116)
T d1gesa2         111 LIWAIG  116 (116)
T ss_dssp             EEECSC
T ss_pred             EEEecC
Confidence            999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.78  E-value=2.1e-08  Score=84.99  Aligned_cols=71  Identities=6%  Similarity=0.107  Sum_probs=60.7

Q ss_pred             cEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC
Q psy8791         251 AKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM  321 (706)
Q Consensus       251 ~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~  321 (706)
                      .+|+++++.+.+++  ++++++.+++.|+++||++++++.|++|+.+++.+..+.+++|++++||+||||+|.
T Consensus        45 ~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          45 GQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             cccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence            46999999999987  789999999999999999999999999975443333345568999999999999983

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.77  E-value=7.3e-09  Score=88.66  Aligned_cols=91  Identities=13%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccc-ccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~-~~v~~  107 (706)
                      .++|+|||||+.|+.+|..|+++  |.+|||||+.++..         ....++ .+...+.+ +...+++++. .++++
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~--g~~Vtlie~~~~~l---------~~~~d~-~~~~~~~~~l~~~gv~~~~~~~v~~   97 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILDRPL---------GVYLDK-EFTDVLTEEMEANNITIATGETVER   97 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTT---------TTTCCH-HHHHHHHHHHHTTTEEEEESCCEEE
T ss_pred             CCEEEEECChHHHHHHHHHhhcc--ceEEEEEEecCccc---------ccccch-hhHHHHHHHhhcCCeEEEeCceEEE
Confidence            46899999999999999999999  99999999998531         111111 12222333 3347899987 68888


Q ss_pred             EEcCCC-EEEeCCCeEEEecEEEEcc
Q psy8791         108 FDPENN-RVRTQAGSEISYEYMIVAS  132 (706)
Q Consensus       108 id~~~~-~v~~~~g~~~~yd~lviAt  132 (706)
                      ++.+.+ ...+.+|+++++|.+++|.
T Consensus        98 i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          98 YEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             EECSSBCCEEEESSCEEECSEEEECS
T ss_pred             EEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            987654 3446788899999999973

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.77  E-value=7e-10  Score=108.47  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .|||+|||||+||++||..|+++  +.+|+|||+++..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~--G~~V~liEk~~~~   37 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKL   37 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            47999999999999999999998  8999999997754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.77  E-value=8.7e-10  Score=108.55  Aligned_cols=153  Identities=18%  Similarity=0.113  Sum_probs=84.3

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccc
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKI  542 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~  542 (706)
                      ...+.||+||||||++|+.+|..+++.  +.++++||+.+..          ||.| .+..|.|.|.++..+........
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~~--G~kv~vve~~~~l----------GG~c-~n~GcvP~k~l~~~a~~~~~~~~  104 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFL----------GGSC-PHNACVPHHLFSDCAAELMLART  104 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS----------SCHH-HHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCcc----------cccc-ccccccchHHHHhhHHhHHHHHH
Confidence            344678999999999999999999998  8899999986653          3443 24445566554443311111000


Q ss_pred             cccCCCceEEEeeecceecCCCcccccCccccccccccccccccc---chhhhccC-CcEEEeceEEEEEcCCCeEEcCC
Q psy8791         543 VSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR---PMKSVLPS-GATWVKDKIVSFDPENNRVRTQA  618 (706)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-gv~~~~~~v~~id~~~~~V~~~~  618 (706)
                        +.....+.        .....   ...+...............   ........ ...++.+.+..+|..  +|.. +
T Consensus       105 --~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~--~v~~-~  168 (261)
T d1mo9a1         105 --FSGQYWFP--------DMTEK---VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNH--TVEA-A  168 (261)
T ss_dssp             --TTTSTTCC--------CCTTC---CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETT--EEEE-T
T ss_pred             --hhhhcccc--------ccccc---cccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeec--cccc-c
Confidence              00000000        00000   0000000000000000000   01111122 344577888888865  4543 6


Q ss_pred             CcEEeeCEEEEecCcccCccCCCCch
Q psy8791         619 GSEISYEYMIVASGIQMYYDRVKGGT  644 (706)
Q Consensus       619 g~~i~yd~lViAtGs~~~~p~i~G~~  644 (706)
                      |+++++|++++|||++|+.|++|+.+
T Consensus       169 g~~i~ad~viiAtG~~P~~~~i~~~~  194 (261)
T d1mo9a1         169 GKVFKAKNLILAVGAGPGTLDVPEQP  194 (261)
T ss_dssp             TEEEEBSCEEECCCEECCCCCSTCEE
T ss_pred             cceEeeeeeeeccCCCCCcCcccccc
Confidence            78999999999999999999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.5e-09  Score=90.52  Aligned_cols=94  Identities=16%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhc--CCCeEEEEcCCCCcccCcccccccCccccCcccccc-cccccCCCcEEEE-cee
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKL--GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP-MKSVLPSGATWVK-DKI  105 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~--~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~-~~v  105 (706)
                      .++++|||||+.|+-+|..|++..  .+.+|++|++++....         ...+ +.+... .+.+...+++++. ..|
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~---------~~~~-~~~~~~~~~~l~~~GV~~~~~~~V  106 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG---------KILP-EYLSNWTMEKVRREGVKVMPNAIV  106 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT---------TTSC-HHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc---------ccCC-HHHHHHHHHHHHhCCcEEEeCCEE
Confidence            358999999999999999996531  2789999999986321         1111 111111 2334457999987 578


Q ss_pred             EEEEcCCC--EEEeCCCeEEEecEEEEccc
Q psy8791         106 VSFDPENN--RVRTQAGSEISYEYMIVASG  133 (706)
Q Consensus       106 ~~id~~~~--~v~~~~g~~~~yd~lviAtG  133 (706)
                      ++++.++.  .+++++|+++.+|.+++|+|
T Consensus       107 ~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             EEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            88887655  57888999999999999999

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=3.9e-09  Score=89.34  Aligned_cols=91  Identities=22%  Similarity=0.336  Sum_probs=65.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccc-cCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~-~~v~~  107 (706)
                      .++++|||||+.|+.+|..|++.  |.+|||+|+.+...  |.        .+ .++...+.+. .+.++++.. .+|++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~~il--~~--------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~   87 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARERIL--PT--------YD-SELTAPVAESLKKLGIALHLGHSVEG   87 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSS--TT--------SC-HHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHhhc--ccceEEEeeecccc--cc--------cc-chhHHHHHHHHHhhcceEEcCcEEEE
Confidence            46899999999999999999999  99999999998632  11        11 1122223333 346899877 57888


Q ss_pred             EEcCCCEEEeCCC--eEEEecEEEEccc
Q psy8791         108 FDPENNRVRTQAG--SEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~~~v~~~~g--~~~~yd~lviAtG  133 (706)
                      ++.....+...++  .++++|.+++|+|
T Consensus        88 i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          88 YENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            8754433333333  5799999999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=4.9e-09  Score=98.77  Aligned_cols=119  Identities=20%  Similarity=0.210  Sum_probs=71.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .|||||||||+||+.||..+++.  +.++.||+++....        +..+|+.... .+.+.++..             
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~--G~ktllit~~~~~i--------g~~~cnp~~g-g~~kg~l~r-------------   57 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK--GVRVGLLTQSLDAV--------MMPFLPPKPP-FPPGSLLER-------------   57 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGT--------TCCSSCCCSC-CCTTCHHHH-------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC--CCcEEEEEeccchh--------cccccCCccc-cCCCcceee-------------
Confidence            58999999999999999999998  89999998764321        1111111111 111110000             


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccccccccccccchhhhc--cCCcEEEeceEEEEEcCCCe---EEcCCCcE
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL--PSGATWVKDKIVSFDPENNR---VRTQAGSE  621 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gv~~~~~~v~~id~~~~~---V~~~~g~~  621 (706)
                                  .+.....               .....+...++.+  ..++++++++|+.+..++..   |++.+|.+
T Consensus        58 ------------eid~kG~---------------av~a~raQ~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~  110 (230)
T d2cula1          58 ------------AYDPKDE---------------RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPP  110 (230)
T ss_dssp             ------------HCCTTCC---------------CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCC
T ss_pred             ------------eeeccch---------------hhhhHHHHHHHHHhhhcCHHHHhccceeeEecccceeeEEeccccE
Confidence                        0000000               0000111111121  14899999999988766553   67889999


Q ss_pred             EeeCEEEEecCcccC
Q psy8791         622 ISYEYMIVASGIQMY  636 (706)
Q Consensus       622 i~yd~lViAtGs~~~  636 (706)
                      +.++.||||||...+
T Consensus       111 ~~AkaVILtTGTFL~  125 (230)
T d2cula1         111 ARGEKVVLAVGSFLG  125 (230)
T ss_dssp             EECSEEEECCTTCSS
T ss_pred             EEEeEEEEccCccee
Confidence            999999999997543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.74  E-value=3.2e-09  Score=104.27  Aligned_cols=94  Identities=20%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhCCceEEcCCc-eE-----EEeCCCCE-EEEEeCCCceEEeecEEEECCCCCch------hh--hhcCCC
Q psy8791         268 YAEKIHDILIGRGVDVHKGKA-LV-----EIDLANKE-AVFKSEDKTERLPYAIMHVTPPMGPV------PE--LATSRL  332 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~-v~-----~i~~~~~~-v~~~~~~~g~~i~~D~vI~a~G~~~~------~~--~~~~~l  332 (706)
                      +.+.+.+.|++.||+++.+.. +.     .+...... .......+++++.+|.||+|||.+|.      +.  +...++
T Consensus        90 ~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i  169 (259)
T d1onfa1          90 LNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV  169 (259)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTSSCTTTTC
T ss_pred             cccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccccccccccee
Confidence            445566677778888887632 11     11111100 11111114467999999999999982      11  233455


Q ss_pred             CCCCCceeeCccccccCCCCCEEEccccCCC
Q psy8791         333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNL  363 (706)
Q Consensus       333 ~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~  363 (706)
                      .++++++.+|. ..+ +...++|++||++..
T Consensus       170 ~ts~~~~~~d~-~~~-t~Vig~gaiGdv~~~  198 (259)
T d1onfa1         170 ETNNNYIVVDE-NQR-TSVNNIYAVGDCCMV  198 (259)
T ss_dssp             CBSSSCEEECT-TCB-CSSSSEEECSTTEEE
T ss_pred             eeccccccccc-CCc-eeEeeEEEEEEeeeh
Confidence            67788899997 454 688999999998764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.73  E-value=1.4e-08  Score=86.16  Aligned_cols=94  Identities=20%  Similarity=0.284  Sum_probs=68.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhc-CCCeEEEEcCCCCcccCcccccccCccccCccccccccc-ccCCCcEEEE-ceeE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKL-GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVK-DKIV  106 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~-~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~-~~v~  106 (706)
                      .++++|||||+.|+-+|..|++.. .+.+|+++++.+...  |.        .++ ++...+.+ +.+.+++++. .+++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--~~--------~d~-~~~~~~~~~l~~~GI~v~~~~~v~   86 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--RG--------FDS-ELRKQLTEQLRANGINVRTHENPA   86 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--TT--------SCH-HHHHHHHHHHHHTTEEEEETCCEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--cc--------ccc-hhhHHHHHHHhhCcEEEEcCCEEE
Confidence            368999999999999998877652 278999999988532  11        111 12222333 3347999987 6788


Q ss_pred             EEEcCCC---EEEeCCCeEEEecEEEEcccc
Q psy8791         107 SFDPENN---RVRTQAGSEISYEYMIVASGI  134 (706)
Q Consensus       107 ~id~~~~---~v~~~~g~~~~yd~lviAtG~  134 (706)
                      +|..+.+   .+.+++|+++++|.+++|+|.
T Consensus        87 ~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          87 KVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             EEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence            9975432   578899999999999999993

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.70  E-value=1.8e-08  Score=85.63  Aligned_cols=91  Identities=19%  Similarity=0.365  Sum_probs=67.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccc-cCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~-~~v~~  107 (706)
                      ..+++|||||+.|+-+|..|++.  |.+||+++++++..  |.        .+ .++...+.+. .+.++++.. .++++
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~--G~~Vtiv~~~~~ll--~~--------~d-~ei~~~l~~~l~~~Gv~i~~~~~v~~   88 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARL--GAEVTVLEAMDKFL--PA--------VD-EQVAKEAQKILTKQGLKILLGARVTG   88 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSS--TT--------SC-HHHHHHHHHHHHHTTEEEEETCEEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCceEEEEeecccC--Cc--------cc-chhHHHHHHHHHhcCceeecCcEEEE
Confidence            47899999999999999999999  99999999998632  11        11 1222223333 347899887 57888


Q ss_pred             EEcCCC--EEEeCCC---eEEEecEEEEccc
Q psy8791         108 FDPENN--RVRTQAG---SEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~~--~v~~~~g---~~~~yd~lviAtG  133 (706)
                      ++....  ++++.++   +++.+|++++|+|
T Consensus        89 i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          89 TEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            987666  3554443   5789999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.70  E-value=1.7e-09  Score=103.38  Aligned_cols=144  Identities=17%  Similarity=0.142  Sum_probs=79.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .+||||||||+||+.||..+++.  +.+|+|||++.           .||.|. +..+.|.|.++.....+.........
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~~-----------~GG~c~-~~gc~p~k~~~~~~~~~~~~~~~~~~   70 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQA-----------LGGTCL-NIGCIPSKALIHVAEQFHQASRFTEP   70 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSC-----------TTHHHH-HHSHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC-----------CCCccc-ccccccchhhhhhHHHHhhhhhcccc
Confidence            57999999999999999999999  89999999854           144443 33455666555443221111110000


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEee
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEISY  624 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~y  624 (706)
                      ....+.      .-+...      .+...... ....+........+.. .+++++.++...++..  .+. .++.++.+
T Consensus        71 ~~~g~~------~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~--~~~-~~~~~i~a  135 (220)
T d1lvla1          71 SPLGIS------VASPRL------DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGK--QVE-VDGQRIQC  135 (220)
T ss_dssp             CTTCCC------CCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETT--EEE-ETTEEEEC
T ss_pred             ccceEE------ecccee------hHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcc--ccc-ccceeEee
Confidence            000000      000000      00000000 0000001111122222 6899999999998865  333 35678999


Q ss_pred             CEEEEecCcccCccC
Q psy8791         625 EYMIVASGIQMYYDR  639 (706)
Q Consensus       625 d~lViAtGs~~~~p~  639 (706)
                      |++|||||++|..+|
T Consensus       136 ~~viiAtG~~p~~lp  150 (220)
T d1lvla1         136 EHLLLATGSSSVELP  150 (220)
T ss_dssp             SEEEECCCEEECCBT
T ss_pred             ceeeEcCCCCccccc
Confidence            999999999987643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.68  E-value=6.2e-08  Score=81.96  Aligned_cols=77  Identities=9%  Similarity=0.239  Sum_probs=61.9

Q ss_pred             HHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-EEEEEeCCCceEEeecEEEE
Q psy8791         241 YLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-EAVFKSEDKTERLPYAIMHV  317 (706)
Q Consensus       241 ~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~v~~~~~~~g~~i~~D~vI~  317 (706)
                      .+...+. ...+|+++++.+.+++  ++.+.+.+++.|+++||++++++++++++.+++ .+. +.+++|++++||+|||
T Consensus        38 ~l~~l~~-~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~-v~~~~G~~i~~D~Vi~  115 (117)
T d1aoga2          38 IFNAYKP-KDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKS-VTFESGKKMDFDLVMM  115 (117)
T ss_dssp             HHHHHCC-TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEE-EEETTSCEEEESEEEE
T ss_pred             Hhhhccc-CCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEE-EEECCCcEEEeCEEEE
Confidence            4455543 2347999999999987  789999999999999999999999999975433 333 4456899999999999


Q ss_pred             CC
Q psy8791         318 TP  319 (706)
Q Consensus       318 a~  319 (706)
                      |.
T Consensus       116 AI  117 (117)
T d1aoga2         116 AI  117 (117)
T ss_dssp             CS
T ss_pred             eC
Confidence            84

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.68  E-value=1.2e-07  Score=98.01  Aligned_cols=118  Identities=12%  Similarity=0.109  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhCCceEEcCCceEEEeCCCC-EEEEEeCC---------------CceEEeecEEEECCCCCch---hhhhc
Q psy8791         269 AEKIHDILIGRGVDVHKGKALVEIDLANK-EAVFKSED---------------KTERLPYAIMHVTPPMGPV---PELAT  329 (706)
Q Consensus       269 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~v~~~~~~---------------~g~~i~~D~vI~a~G~~~~---~~~~~  329 (706)
                      ...+.+..++.|+++..+..+.++..++. .+......               .+....++..+++.|....   ..+..
T Consensus       144 ~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~  223 (380)
T d2gmha1         144 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKK  223 (380)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhh
Confidence            33444455556666666666655543221 11111110               2234568888999998876   23333


Q ss_pred             CCC----CCCCCceeeCccccccCCCCCEEEccccCCCCCC---chHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         330 SRL----VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTS---KTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       330 ~~l----~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~---~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      ..+    ....|+ .    .+.....|++..+||++..-.|   +-...|+..|+.||+.+...+....
T Consensus       224 ~~l~~~~~~~~G~-~----sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~  287 (380)
T d2gmha1         224 FDLRANCEPQGGF-Q----SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSEN  287 (380)
T ss_dssp             TTTTTTSCCCCGG-G----GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hhhcccccccccc-c----cccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHHHHHHcCC
Confidence            222    222332 1    1112346899999999987554   4467899999999999999886554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.68  E-value=1.1e-08  Score=104.43  Aligned_cols=39  Identities=21%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH   67 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~   67 (706)
                      ..++|+|||||++||+||+.|++...+++|+|+||++..
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            457899999999999999999887445799999999753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.67  E-value=1.5e-09  Score=104.52  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=62.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccc-cccccCCCcEEEEceeEEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP-MKSVLPSGATWVKDKIVSF  108 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~v~~i  108 (706)
                      +++|+|||||+|||+||.+|++...+++|||||+.+.......+ ..+........+... ...+...++++....... 
T Consensus         1 ~~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-   78 (230)
T d1cjca2           1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF-GVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   78 (230)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH-TSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh-hccccccccccchhhhhhhhhcCCeeEEeeEEeC-
Confidence            36999999999999999999988668899999999863321111 111112222222222 223334677776543221 


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEccccccc-cCCCCC
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGIQMY-YDRVKG  143 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~~~~-~~~~~g  143 (706)
                       .+   +...+ -.-.||.+++|||+... .+.+++
T Consensus        79 -~~---~~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~  109 (230)
T d1cjca2          79 -RD---VTVQE-LQDAYHAVVLSYGAEDKSRPIDPS  109 (230)
T ss_dssp             -TT---BCHHH-HHHHSSEEEECCCCCEECCCCCTT
T ss_pred             -cc---ccHHH-HHhhhceEEEEeeccccccccccc
Confidence             11   11110 01259999999998653 344555

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=2e-08  Score=94.57  Aligned_cols=106  Identities=21%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccC----cccccccCccc----cCc-c-cccc---cccc-c-
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ----PMFTLIGGGMK----KLS-D-SRRP---MKSV-L-   94 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~----p~~~~~~~~~~----~~~-~-~~~~---~~~~-~-   94 (706)
                      .+||||||||+||+.||.+++|.  +.++.||+++......    |.......+..    ... . ...+   .++. . 
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~--G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~   79 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK--GVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG   79 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC--CCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence            58999999999999999999999  9999999987421111    11111111100    000 0 0001   1111 1 


Q ss_pred             CCCcEEEEceeEEEEcCCCE---EEeCCCeEEEecEEEEccccccc
Q psy8791          95 PSGATWVKDKIVSFDPENNR---VRTQAGSEISYEYMIVASGIQMY  137 (706)
Q Consensus        95 ~~~v~~i~~~v~~id~~~~~---v~~~~g~~~~yd~lviAtG~~~~  137 (706)
                      ..++++++++|+++..+++.   |.+.+|.++.++.|||+||.-.+
T Consensus        80 ~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             hcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence            25889999999998776653   56788989999999999997543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.67  E-value=7.6e-08  Score=83.35  Aligned_cols=78  Identities=13%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             HHHHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCC--CCEEEEEeCCCceEEeec
Q psy8791         239 DEYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLA--NKEAVFKSEDKTERLPYA  313 (706)
Q Consensus       239 ~~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~v~~~~~~~g~~i~~D  313 (706)
                      +..+++.|.    +|+++++.+++++   ++.+.+.+++.++++||++++++.+++++..  +..+..+.+++|+++++|
T Consensus        51 A~~l~~~g~----~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D  126 (133)
T d1q1ra2          51 AATAIKANM----HVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPAD  126 (133)
T ss_dssp             HHHHHHTTC----EEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECS
T ss_pred             HHHHHhhCc----ceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECC
Confidence            345666664    5999999999886   6789999999999999999999999999753  334555667799999999


Q ss_pred             EEEECCC
Q psy8791         314 IMHVTPP  320 (706)
Q Consensus       314 ~vI~a~G  320 (706)
                      +||+|+|
T Consensus       127 ~vi~a~G  133 (133)
T d1q1ra2         127 LVIAGIG  133 (133)
T ss_dssp             EEEECCC
T ss_pred             EEEEeeC
Confidence            9999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.66  E-value=2.8e-08  Score=83.98  Aligned_cols=90  Identities=11%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccc-cccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK-SVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~-~~v~~  107 (706)
                      .++|+|||||+.|+.+|..|++.  |.+||||++.+...  |.        .+ ..+...+. .+.+.+++++. .+|++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~~il--~~--------~d-~~~~~~~~~~l~~~gV~i~~~~~v~~   88 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRL--GIDSYIFARGNRIL--RK--------FD-ESVINVLENDMKKNNINIVTFADVVE   88 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSSSC--TT--------SC-HHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhc--cccceeeehhcccc--cc--------cc-HHHHHHHHHHHHhCCCEEEECCEEEE
Confidence            57899999999999999999998  99999999998632  11        11 11222222 33447899986 67888


Q ss_pred             EEcCC-C--EEEeCCCeEE-EecEEEEcc
Q psy8791         108 FDPEN-N--RVRTQAGSEI-SYEYMIVAS  132 (706)
Q Consensus       108 id~~~-~--~v~~~~g~~~-~yd~lviAt  132 (706)
                      ++... +  ++.+++|+.+ .||.+++|.
T Consensus        89 i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          89 IKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             EEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            87433 2  5788999877 589999983

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.64  E-value=1.1e-08  Score=87.34  Aligned_cols=87  Identities=16%  Similarity=0.251  Sum_probs=64.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccc-ccccCCCcEEEE-ceeEEE
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVK-DKIVSF  108 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~-~~v~~i  108 (706)
                      ++++|||||+.|+.+|..|+++  |.+|||+++++...  +         .+ ..+...+ +.+.+.+++++. .+++++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~~l~--~---------~d-~~~~~~~~~~l~~~GV~~~~~~~v~~~   98 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGAMFL--G---------LD-EELSNMIKDMLEETGVKFFLNSELLEA   98 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT--TCEEEEECSSSCCT--T---------CC-HHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred             CcEEEECCcHHHHHHHHHhhcc--cceEEEEecccccc--C---------CC-HHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence            6899999999999999999999  99999999998532  1         11 1111122 223347999987 578888


Q ss_pred             EcCCCEEEeCCCeEEEecEEEEcccc
Q psy8791         109 DPENNRVRTQAGSEISYEYMIVASGI  134 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~yd~lviAtG~  134 (706)
                      +.+  .+ +.++..+++|.+|+|+|.
T Consensus        99 ~~~--~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          99 NEE--GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             CSS--EE-EETTEEEECSCEEEECCE
T ss_pred             eCC--EE-EeCCCEEECCEEEEEEEe
Confidence            643  33 456778999999999994

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.62  E-value=1.3e-07  Score=80.05  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeCCCceEE
Q psy8791         235 VLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSEDKTERL  310 (706)
Q Consensus       235 ~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g~~i  310 (706)
                      ++..+..+++.|.    +|+++++.+++++  ++++.+.+++.|++.||++++++++++++.+++.  +++...++++++
T Consensus        34 g~E~A~~l~~~G~----~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~  109 (119)
T d3lada2          34 GLELGSVWARLGA----EVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQ  109 (119)
T ss_dssp             HHHHHHHHHHTTC----EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEE
T ss_pred             HHHHHHHHHHcCC----ceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEE
Confidence            3344456777875    4999999999987  7999999999999999999999999999877664  444444445789


Q ss_pred             eecEEEECCC
Q psy8791         311 PYAIMHVTPP  320 (706)
Q Consensus       311 ~~D~vI~a~G  320 (706)
                      +||.|++|+|
T Consensus       110 ~~D~vlvAvG  119 (119)
T d3lada2         110 AFDKLIVAVG  119 (119)
T ss_dssp             EESEEEECSC
T ss_pred             ECCEEEEeeC
Confidence            9999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.62  E-value=2.4e-07  Score=78.90  Aligned_cols=76  Identities=9%  Similarity=0.100  Sum_probs=61.4

Q ss_pred             HHHHHHHcCCCCCcEEEEEeCCCcCCC---chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecE
Q psy8791         238 GDEYLRKHKKRDAAKLTYCTGMGVLFP---SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAI  314 (706)
Q Consensus       238 ~~~~l~~~g~~~~~~v~l~~~~~~~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~  314 (706)
                      .+..+.+.|.    +|+++++.+++++   ++++.+.+++.|+++||++++++.+++++.++. +..+ ..+|++++||+
T Consensus        45 ~A~~l~~~g~----~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~v-~~dg~~i~~D~  118 (123)
T d1nhpa2          45 AAEAFAKAGK----KVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR-VQKV-VTDKNAYDADL  118 (123)
T ss_dssp             HHHHHHHTTC----EEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSB-CCEE-EESSCEEECSE
T ss_pred             HHHHhhccce----EEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCC-EEEE-EeCCCEEECCE
Confidence            3445667764    5999999998875   688999999999999999999999999987653 2222 23788999999


Q ss_pred             EEECC
Q psy8791         315 MHVTP  319 (706)
Q Consensus       315 vI~a~  319 (706)
                      ||+|.
T Consensus       119 vi~aI  123 (123)
T d1nhpa2         119 VVVAV  123 (123)
T ss_dssp             EEECS
T ss_pred             EEEEC
Confidence            99984

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.62  E-value=8.2e-08  Score=80.93  Aligned_cols=88  Identities=15%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             eeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEe
Q psy8791         226 KCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKS  303 (706)
Q Consensus       226 ~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~  303 (706)
                      .++|++.  ++..+..+++.|.    +|+++++.+++++  ++++.+.+++.|+++||+++++++|++++.+. .+....
T Consensus        26 IiGgG~~--G~E~A~~l~~~g~----~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~~~~~   98 (115)
T d1lvla2          26 VVGGGYI--GLELGIAYRKLGA----QVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGC-LLANDG   98 (115)
T ss_dssp             EECCSHH--HHHHHHHHHHHTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTE-EEEECS
T ss_pred             EECCCHH--HHHHHHHHhhccc----ceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcCCe-EEEEEc
Confidence            3455533  2223345677774    5999999999988  78899999999999999999999999997533 233332


Q ss_pred             CCCceEEeecEEEECCC
Q psy8791         304 EDKTERLPYAIMHVTPP  320 (706)
Q Consensus       304 ~~~g~~i~~D~vI~a~G  320 (706)
                      .+++++++||.||+|+|
T Consensus        99 ~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          99 KGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             SSCCCEECCSCEEECCC
T ss_pred             CCCeEEEEcCEEEEecC
Confidence            33456899999999998

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.61  E-value=1.5e-06  Score=86.82  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +.+||||||||++||+||.+|+++  |.+|+||||.+.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~~   50 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPV   50 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            468999999999999999999999  899999999874

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.61  E-value=1.7e-09  Score=103.36  Aligned_cols=150  Identities=18%  Similarity=0.164  Sum_probs=78.5

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .|||+|||||+||++||..+++.  +.+|+|||+++..          ||.|....+ .|.+.+...+..+.....  ..
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~--G~kV~vie~~~~~----------GG~~~~~~~-~~~~~~~~~a~~~~~~~~--~~   67 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGAL----------GGTCLNVGC-IPSKALLHSSHMYHEAKH--SF   67 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSS----------CCSHHHHSH-HHHHHHHHHHHHHHHHHH--TH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCCC----------CCeeecchh-hhhhhhhHhHHHHHHHhh--hh
Confidence            58999999999999999999998  8999999986643          444433222 222222111100000000  00


Q ss_pred             CCceEEEeeecceecCCCcccccCcccccc-cccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEc--CCCcEE
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIG-GGMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRT--QAGSEI  622 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~--~~g~~i  622 (706)
                      ....+         ......   ..+.... ........+...+..++. .+++++..++..+++....+..  .+...+
T Consensus        68 ~~~g~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~  135 (221)
T d1dxla1          68 ANHGV---------KVSNVE---IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVV  135 (221)
T ss_dssp             HHHTE---------EESCEE---ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEE
T ss_pred             hhcCe---------ecccce---ecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEecccccccccccccccccccccc
Confidence            00000         000000   0000000 000000111122222333 5899999998888876544332  344678


Q ss_pred             eeCEEEEecCccc--CccCCCCc
Q psy8791         623 SYEYMIVASGIQM--YYDRVKGG  643 (706)
Q Consensus       623 ~yd~lViAtGs~~--~~p~i~G~  643 (706)
                      .+|++|||||++|  +.|..+++
T Consensus       136 ~a~~VIiATGs~~~gr~p~~~~l  158 (221)
T d1dxla1         136 KGKHIIIATGSDVKGRTPFTSGL  158 (221)
T ss_dssp             ECSEEEECCCEEECCEEECCTTS
T ss_pred             ccceEEEeECCCccCccccCCCC
Confidence            9999999999976  35655544

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=5.8e-09  Score=100.55  Aligned_cols=148  Identities=18%  Similarity=0.216  Sum_probs=81.6

Q ss_pred             cccccccCcchhHHHHHHHHHhhcC-CCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccc-ccc
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLG-KGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDK-IVS  544 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~-~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  544 (706)
                      |.+|+|||+|+||++||..+.+... ..+|++||++.           .||.|. +..|.|.|.|+.+........ ...
T Consensus         1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~-----------~GG~cl-n~GciPsK~ll~~a~~~~~~~~~~~   68 (233)
T d1xdia1           1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-----------IGGAAV-LDDCVPSKTFIASTGLRTELRRAPH   68 (233)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-----------TTHHHH-HTSHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC-----------CCceee-cccccccEEEEeecchhhhhhhhhh
Confidence            4689999999999999999887632 36899999843           133332 334458887766653322211 111


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccccc-ccccccchhhhcc-CCcEEEeceEEEEEcCC----C--eEEc
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKK-LSDSRRPMKSVLP-SGATWVKDKIVSFDPEN----N--RVRT  616 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~----~--~V~~  616 (706)
                      +...+...        +.  .    ..++.+...... ...........+. .+|+++.++...++...    .  .+..
T Consensus        69 ~G~~i~~~--------~~--~----~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~  134 (233)
T d1xdia1          69 LGFHIDFD--------DA--K----ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATA  134 (233)
T ss_dssp             TTBC----------------C----BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEEC
T ss_pred             cCCccccc--------Cc--e----eeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEe
Confidence            11000000        00  0    000000000000 0011112223333 79999999988887643    2  3445


Q ss_pred             CCCc--EEeeCEEEEecCcccCccCC
Q psy8791         617 QAGS--EISYEYMIVASGIQMYYDRV  640 (706)
Q Consensus       617 ~~g~--~i~yd~lViAtGs~~~~p~i  640 (706)
                      .+|+  ++++|.+|+|||++|..++.
T Consensus       135 ~dg~~~~i~ad~viiAtG~~p~~~~~  160 (233)
T d1xdia1         135 ADGSTSEHEADVVLVATGASPRILPS  160 (233)
T ss_dssp             TTSCEEEEEESEEEECCCEEECCCGG
T ss_pred             cCCceeeeecceeeeecCcccccccc
Confidence            5664  68999999999999976543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=5e-09  Score=100.08  Aligned_cols=144  Identities=14%  Similarity=0.121  Sum_probs=81.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      ..||+||||||+||++||..+++.  +.+|+|||++..           ||.|. +..+.|.+.+++.+...........
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~--G~kV~vIEk~~~-----------GG~c~-n~g~~~~k~l~~~a~~~~~~~~~~~   67 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAEL--GARAAVVESHKL-----------GGTCV-NVGCVPKKVMWNTAVHSEFMHDHAD   67 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-----------THHHH-HHSHHHHHHHHHHHHHHHHHHTTGG
T ss_pred             CccCEEEECCCHHHHHHHHHHHHC--CCEEEEEeccCC-----------CCccc-cchhhhhhhhhhHHHHHHHHhhhhh
Confidence            579999999999999999999998  889999998542           33332 3334566665554321111000000


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCcEEe
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGSEIS  623 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~~i~  623 (706)
                         ..        ........    .+...... ......+.......++ .+|+++.++..+.+....++... ...+.
T Consensus        68 ---~~--------~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~-~~~~~  131 (221)
T d3grsa1          68 ---YG--------FPSCEGKF----NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVS-GKKYT  131 (221)
T ss_dssp             ---GT--------SCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEET-TEEEE
T ss_pred             ---cc--------ccccccch----hhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeee-ccccc
Confidence               00        00000000    00000000 0000111111222223 68999999988887776666543 35889


Q ss_pred             eCEEEEecCcccCccC
Q psy8791         624 YEYMIVASGIQMYYDR  639 (706)
Q Consensus       624 yd~lViAtGs~~~~p~  639 (706)
                      .+.++||||+.|..|.
T Consensus       132 ~~~~~iatG~~p~vp~  147 (221)
T d3grsa1         132 APHILIATGGMPSTPH  147 (221)
T ss_dssp             CSCEEECCCEEECCCC
T ss_pred             cceeEEecCccccCCC
Confidence            9999999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.56  E-value=1.1e-07  Score=80.48  Aligned_cols=92  Identities=17%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhc-CCCeEEEEcCCCCcccCcccccccCccccCccccccc-ccccCCCcEEEE-ceeE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKL-GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVK-DKIV  106 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~-~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~-~~v~  106 (706)
                      .++++|||||+.|+-+|..|++.. .+.+||||++.+...  |.        .+ ..+...+ +.+.+.|++++. .+++
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL--~~--------~d-~~~~~~l~~~l~~~GV~v~~~~~v~   88 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL--RG--------FD-HTLREELTKQLTANGIQILTKENPA   88 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS--TT--------SC-HHHHHHHHHHHHHTTCEEEESCCEE
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh--cc--------cc-hHHHHHHHHHHHhcCcEEEcCCEEE
Confidence            468999999999999998887763 256899999988532  11        11 1122222 233347999987 5788


Q ss_pred             EEEcCC---CEEEeCCCeEEEecEEEEcc
Q psy8791         107 SFDPEN---NRVRTQAGSEISYEYMIVAS  132 (706)
Q Consensus       107 ~id~~~---~~v~~~~g~~~~yd~lviAt  132 (706)
                      +++...   ..+++++|+++++|.+++|.
T Consensus        89 ~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          89 KVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            897543   25889999999999999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.55  E-value=2e-07  Score=85.77  Aligned_cols=110  Identities=13%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEE--cCCCCcccC--cccccccCccccCcccccccccc-cCCCcEEEE-c
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIV--EPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVK-D  103 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtli--e~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~-~  103 (706)
                      ..+|||||||++|+.+|..|+++  +.+++++  ++.+...+.  +.......+.............. ......+.. .
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGT   80 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHc--CCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccc
Confidence            56899999999999999999998  5555554  544432222  11111111111111111111111 113444444 5


Q ss_pred             eeEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCC
Q psy8791         104 KIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV  141 (706)
Q Consensus       104 ~v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~  141 (706)
                      .+..++.+...+...++.++.+|.+++++|..+..+.+
T Consensus        81 ~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~  118 (185)
T d1q1ra1          81 QVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNC  118 (185)
T ss_dssp             CEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECC
T ss_pred             eeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCc
Confidence            67778888889999999999999999999988765443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.53  E-value=4.7e-07  Score=76.92  Aligned_cols=78  Identities=9%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             HHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-E---EEEEeCCCceEEee
Q psy8791         239 DEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-E---AVFKSEDKTERLPY  312 (706)
Q Consensus       239 ~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~---v~~~~~~~g~~i~~  312 (706)
                      +..+++.|.    +++++++.+.+++  ++.+++.+++.++++||++++++.+.+++.+++ .   +.....++++++++
T Consensus        38 A~~l~~~g~----~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~  113 (121)
T d1mo9a2          38 GCFFNATGR----RTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET  113 (121)
T ss_dssp             HHHHHHTTC----EEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEEC
T ss_pred             HHHHHhcch----hheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEc
Confidence            345666664    5999999998876  789999999999999999999999999987543 1   33334556788999


Q ss_pred             cEEEECCC
Q psy8791         313 AIMHVTPP  320 (706)
Q Consensus       313 D~vI~a~G  320 (706)
                      |+||+|+|
T Consensus       114 D~Vi~a~G  121 (121)
T d1mo9a2         114 DFVFLGLG  121 (121)
T ss_dssp             SCEEECCC
T ss_pred             CEEEEEEC
Confidence            99999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.53  E-value=6.9e-08  Score=82.32  Aligned_cols=91  Identities=13%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccc-cccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK-SVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~-~~v~~  107 (706)
                      .++|+|||||+.|+-+|..|++.  +.+|++|++.+...  |.+        ++ .+...+. .+...+++++. .+++.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~--g~~vt~i~~~~~~l--~~~--------d~-~~~~~~~~~l~~~gI~v~~~~~v~~   88 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTEPLK--LIK--------DN-ETRAYVLDRMKEQGMEIISGSNVTR   88 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTT--TCC--------SH-HHHHHHHHHHHHTTCEEESSCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--chhheEeeccchhh--ccc--------cc-chhhhhhhhhhccccEEEcCCEEEE
Confidence            47999999999999999999998  89999999998532  111        11 1111122 23347899876 67888


Q ss_pred             EEcCCC--E--E---EeCCCeEEEecEEEEccc
Q psy8791         108 FDPENN--R--V---RTQAGSEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~~--~--v---~~~~g~~~~yd~lviAtG  133 (706)
                      |+.+.+  .  +   ...+++++++|++++|+|
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          89 IEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             EEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            876543  1  1   123456799999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.53  E-value=8.9e-08  Score=81.02  Aligned_cols=89  Identities=19%  Similarity=0.300  Sum_probs=63.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccc-cccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK-SVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~-~~v~~  107 (706)
                      .++++|||||+.|+.+|..|++.  |.+||||++.+...  |.        .+. ++...+. .+.+.+++++. .+|++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~il--~~--------~d~-~~~~~l~~~l~~~GI~i~~~~~v~~   88 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANF--GTKVTILEGAGEIL--SG--------FEK-QMAAIIKKRLKKKGVEVVTNALAKG   88 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSS--TT--------SCH-HHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred             CCeEEEECCCccceeeeeeeccc--ccEEEEEEecceec--cc--------ccc-hhHHHHHHHHHhcCCEEEcCCEEEE
Confidence            46899999999999999999999  99999999999632  11        111 1222223 33347899887 68888


Q ss_pred             EEcCCCE--EEe-CCC--eEEEecEEEEc
Q psy8791         108 FDPENNR--VRT-QAG--SEISYEYMIVA  131 (706)
Q Consensus       108 id~~~~~--v~~-~~g--~~~~yd~lviA  131 (706)
                      ++.....  +.+ .+|  +++++|.+++.
T Consensus        89 i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          89 AEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            8765543  333 334  46899999873

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=7.9e-09  Score=99.71  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=84.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDS  547 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (706)
                      |||+|||||+||++||.++++.  +.+|+|||+.+.....  .....||.|. +..+.|.+.|..+.......... ...
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~--G~kV~viE~~~~~~~~--~~~~~GG~c~-~~g~~~~k~l~~~~~~~~~~~~~-~~~   77 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFVTPTPLG--TNWGLGGTCV-NVGCIPKKLMHQAALLGQALKDS-RNY   77 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG--CCCEEEECCCCCCTTC--CCCCTTHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCcc--cccccccccc-cccccchhhhhhhhhhhhHhhhh-hcc
Confidence            7999999999999999999998  8999999986643210  0111233332 23334544443332111110000 000


Q ss_pred             CceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCCc--EEe
Q psy8791         548 SYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAGS--EIS  623 (706)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g~--~i~  623 (706)
                      +..+         +....    ..+..+.... ...+.+...+...++ .+|+++.++....+.....+...+++  .+.
T Consensus        78 gi~~---------~~~~~----~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~  144 (235)
T d1h6va1          78 GWKL---------EDTVK----HDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYS  144 (235)
T ss_dssp             TBCC---------CSCCC----BCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEE
T ss_pred             cccc---------cccee----echhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccc
Confidence            0000         00000    0000000000 000111112222333 68999999999988876666666654  589


Q ss_pred             eCEEEEecCcccCccCCC
Q psy8791         624 YEYMIVASGIQMYYDRVK  641 (706)
Q Consensus       624 yd~lViAtGs~~~~p~i~  641 (706)
                      ++.+++++|++|+.++++
T Consensus       145 a~~ivi~~G~~p~~~~i~  162 (235)
T d1h6va1         145 AERFLIATGERPRYLGIR  162 (235)
T ss_dssp             EEEEEECCCEEECCCSSE
T ss_pred             cccceeecCCCceeEEEe
Confidence            999999999999877653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.51  E-value=2.5e-07  Score=77.97  Aligned_cols=76  Identities=5%  Similarity=-0.011  Sum_probs=60.5

Q ss_pred             HHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC-CEEEEEeCCCceEE-eecE
Q psy8791         239 DEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN-KEAVFKSEDKTERL-PYAI  314 (706)
Q Consensus       239 ~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~v~~~~~~~g~~i-~~D~  314 (706)
                      +..+.+.|.    +|+++++.+++++  ++++++.+++.|+++||++++++.|++++..+ +.++. .+++|+.+ ++|.
T Consensus        38 A~~l~~~g~----~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v-~~~~G~~~~~~D~  112 (117)
T d1onfa2          38 INVIKRLGI----DSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSI-HLSDGRIYEHFDH  112 (117)
T ss_dssp             HHHHHTTTC----EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEE-EETTSCEEEEESE
T ss_pred             HHHHHhccc----cceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEE-EECCCCEEEeCCE
Confidence            345666664    5999999999987  79999999999999999999999999997443 33433 44578777 5799


Q ss_pred             EEECC
Q psy8791         315 MHVTP  319 (706)
Q Consensus       315 vI~a~  319 (706)
                      ||||.
T Consensus       113 Vi~AI  117 (117)
T d1onfa2         113 VIYCV  117 (117)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99985

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.49  E-value=4.5e-06  Score=84.36  Aligned_cols=118  Identities=8%  Similarity=0.039  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEE---EEeCCCce--EEeecEEEECCCCCchh---------------
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAV---FKSEDKTE--RLPYAIMHVTPPMGPVP---------------  325 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~---~~~~~~g~--~i~~D~vI~a~G~~~~~---------------  325 (706)
                      ..+...+.+..++.||+++.++.+.++..+++.+.   .....+|+  .+.++.||+|||--...               
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~  237 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT  237 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhh
Confidence            45666777888889999999999988776655443   22233554  57899999999754321               


Q ss_pred             -hhhcCCC--CCCCCceeeCccccccCCCCCEEEccccCCCCCC-------chHHHHHHhHHHHHHHHHH
Q psy8791         326 -ELATSRL--VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTS-------KTAAAVAGQCKVVYDNLSA  385 (706)
Q Consensus       326 -~~~~~~l--~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~-------~~~~~a~~qg~~~a~ni~~  385 (706)
                       .....|.  +.+-++|.+++ +.+ ++.|++|++||+......       .+...+...+...++.+..
T Consensus       238 ~~~~~~G~~~l~~~~~iq~~~-~~~-t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~  305 (336)
T d2bs2a2         238 AIALETGIAQLGNMGGIRTDY-RGE-AKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE  305 (336)
T ss_dssp             HHHHTTSSSCEECCCEEECCT-TSB-CSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccceeech-hhc-ccCCcceeccccccccccccccchhhccchhhhhcchhHHHHHh
Confidence             1112343  34678899998 554 889999999998654221       1233344445555555544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.49  E-value=1e-07  Score=93.17  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+||+|||||++||+||..|+++  |++|+|||+++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            356899999999999999999999  999999999764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.47  E-value=1e-07  Score=81.32  Aligned_cols=92  Identities=22%  Similarity=0.321  Sum_probs=65.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccc-cccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK-SVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~-~~v~~  107 (706)
                      .++++|||||+.|+-+|..+++.  |.+||++++.+...  |.        .++ ++...+. .+...++++.. .++++
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~~il--~~--------~d~-~~~~~l~~~l~~~gv~~~~~~~v~~   92 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMDGLM--QG--------ADR-DLVKVWQKQNEYRFDNIMVNTKTVA   92 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSSSSS--TT--------SCH-HHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeecccc--cc--------chh-hHHHHHHHHHHHcCcccccCcEEEE
Confidence            46899999999999999999999  99999999998532  11        111 1222222 33346888876 67778


Q ss_pred             EEcCCC--EEEeCC--C--eEEEecEEEEcccc
Q psy8791         108 FDPENN--RVRTQA--G--SEISYEYMIVASGI  134 (706)
Q Consensus       108 id~~~~--~v~~~~--g--~~~~yd~lviAtG~  134 (706)
                      +..+..  .+.+++  |  +++++|.+++|+|.
T Consensus        93 v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          93 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            876554  344432  2  47999999999993

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=7.3e-09  Score=100.08  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhc-----CCCeEEEEcCCCCcccCcccccccCccccCccccccc-ccccCCCcEEEEce
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKL-----GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVKDK  104 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~-----~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~  104 (706)
                      ++|+|||||+|||+||++|+++.     .+++|+|+|+.+.....- ...++........+.... ..+...++++....
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~-~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV-RSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH-HHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee-eeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            58999999999999999999982     346899999998633210 011111112222222222 22334677776643


Q ss_pred             eEEEEcCCCEEEeCCCeEEEecEEEEccccccccCCCCC
Q psy8791         105 IVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG  143 (706)
Q Consensus       105 v~~id~~~~~v~~~~g~~~~yd~lviAtG~~~~~~~~~g  143 (706)
                      ..  .   ..+..++ ....||.+++|||+.......+|
T Consensus        82 ~v--~---~~~~~~~-~~~~~~~v~~atGa~~~~~~~~g  114 (239)
T d1lqta2          82 VV--G---EHVQPGE-LSERYDAVIYAVGAQSRGVPTPG  114 (239)
T ss_dssp             CB--T---TTBCHHH-HHHHSSEEEECCCCCEECCCCTT
T ss_pred             Ee--c---cccchhh-hhccccceeeecCCCcccccccc
Confidence            21  1   1111111 12369999999999877666666

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.2e-07  Score=81.02  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=63.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccc-cccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK-SVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~-~~v~~  107 (706)
                      .++++|||||+.|+-+|..|++.  |.+||+++++++..  |.        .+++ +...+. .+.+.+++++. .++++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~--G~~Vtlv~~~~~~l--~~--------~d~~-~~~~~~~~l~~~Gv~i~~~~~v~~   88 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHDKVL--RS--------FDSM-ISTNCTEELENAGVEVLKFSQVKE   88 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSC--TT--------SCHH-HHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhcC--CcEEEEEeeccccc--cc--------hhhH-HHHHHHHHHHHCCCEEEeCCEEEE
Confidence            36899999999999999999999  99999999998632  11        1111 222222 33347899987 67888


Q ss_pred             EEcCCCE--EEe---CCC------eEEEecEEEEccc
Q psy8791         108 FDPENNR--VRT---QAG------SEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~~~--v~~---~~g------~~~~yd~lviAtG  133 (706)
                      |......  +.+   .+|      ...++|++++|+|
T Consensus        89 i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          89 VKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            8655442  221   223      2467999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1.9e-07  Score=79.35  Aligned_cols=89  Identities=19%  Similarity=0.302  Sum_probs=62.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccc-ccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~-~~v~~  107 (706)
                      .++++|||||+.|+-+|..|++.  |.+||||++++...  |.        .++ .+...+.+ +.+.++++.. .+|++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~~~l--~~--------~d~-ei~~~l~~~l~~~GV~i~~~~~v~~   89 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQPQIG--AS--------MDG-EVAKATQKFLKKQGLDFKLSTKVIS   89 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSS--SS--------SCH-HHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHhh--CcceeEEEeccccc--hh--------hhh-hhHHHHHHHHHhccceEEeCCEEEE
Confidence            46899999999999999999999  99999999999632  11        111 12222223 3347899887 57888


Q ss_pred             EEcC--CCEE--EeCCC-----eEEEecEEEEc
Q psy8791         108 FDPE--NNRV--RTQAG-----SEISYEYMIVA  131 (706)
Q Consensus       108 id~~--~~~v--~~~~g-----~~~~yd~lviA  131 (706)
                      ++..  ...+  ++.++     .++++|+|++|
T Consensus        90 v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          90 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            7653  2233  33332     47899999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.38  E-value=9.2e-07  Score=74.53  Aligned_cols=77  Identities=17%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             HHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEE--EeCCCceEEeec
Q psy8791         238 GDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVF--KSEDKTERLPYA  313 (706)
Q Consensus       238 ~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~--~~~~~g~~i~~D  313 (706)
                      .+..+.+.|.    +|+++++.+++++  ++++++.+++.|+++||++++++.+++++.+++.+.+  ...++++++++|
T Consensus        37 ~A~~l~~~G~----~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D  112 (117)
T d1ebda2          37 LGTAYANFGT----KVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDAD  112 (117)
T ss_dssp             HHHHHHHTTC----EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEES
T ss_pred             eeeeeccccc----EEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeE
Confidence            3456777774    4999999999987  7889999999999999999999999999876554433  322234679999


Q ss_pred             EEEEC
Q psy8791         314 IMHVT  318 (706)
Q Consensus       314 ~vI~a  318 (706)
                      .||++
T Consensus       113 ~Vlvs  117 (117)
T d1ebda2         113 YVLVT  117 (117)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99874

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.3e-06  Score=74.40  Aligned_cols=81  Identities=10%  Similarity=-0.025  Sum_probs=63.2

Q ss_pred             HHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeCCCc----
Q psy8791         236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSEDKT----  307 (706)
Q Consensus       236 ~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g----  307 (706)
                      +..+..+.+.|.    +|+++++.+++++  ++++.+.+++.|+++||++++++++++|+.++..  +..+...+|    
T Consensus        35 ~E~A~~l~~~G~----~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~  110 (125)
T d3grsa2          35 VEMAGILSALGS----KTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPV  110 (125)
T ss_dssp             HHHHHHHHHTTC----EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCE
T ss_pred             HHHHHHHhcCCc----EEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcC
Confidence            334456777774    5999999999987  7899999999999999999999999999765443  333333333    


Q ss_pred             --eEEeecEEEECCC
Q psy8791         308 --ERLPYAIMHVTPP  320 (706)
Q Consensus       308 --~~i~~D~vI~a~G  320 (706)
                        ..+++|.|+||+|
T Consensus       111 ~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         111 MTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEEEEESEEEECSC
T ss_pred             ccccccCCEEEEEeC
Confidence              3578999999998

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.38  E-value=1.9e-08  Score=96.30  Aligned_cols=153  Identities=16%  Similarity=0.123  Sum_probs=78.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  545 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  545 (706)
                      +.|||+|||||+||++||.++++.  +.+|+|||+.....-..   .+ ||.+. +..+.|.+.+.............  
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~--G~~V~viE~~~~~~~~~---~~-gg~~~-~~g~~~~~~~~~~~~~~~~~~~~--   72 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEGKT---AL-GGTCL-NVGCIPSKALLDSSYKFHEAHES--   72 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTSSB---CC-SHHHH-HHSHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecccCCCccc---cc-ccccc-ccccchhhhhhhhhhhhhhhhhh--
Confidence            579999999999999999999998  89999999865322111   11 22221 12222332222211000000000  


Q ss_pred             CCCceEEEeeecceecCCCcccccCcccccccccc-cccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcCCC--cE
Q psy8791         546 DSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMK-KLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQAG--SE  621 (706)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~~g--~~  621 (706)
                      .....+.        ......    .+........ ....+......++. .+|+++.++....+.....+...++  ..
T Consensus        73 ~~~~gi~--------~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~  140 (229)
T d3lada1          73 FKLHGIS--------TGEVAI----DVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQV  140 (229)
T ss_dssp             SGGGTEE--------CSCCEE----CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEE
T ss_pred             hhhcccc--------cCccee----ecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCcccee
Confidence            0000000        000000    0000000000 00111112222333 5899999988887776655555443  46


Q ss_pred             EeeCEEEEecCcccCccC
Q psy8791         622 ISYEYMIVASGIQMYYDR  639 (706)
Q Consensus       622 i~yd~lViAtGs~~~~p~  639 (706)
                      +..+.+++|||++|..++
T Consensus       141 ~~~~~~i~atG~~~~~~~  158 (229)
T d3lada1         141 LDTENVILASGSKPVEIP  158 (229)
T ss_dssp             ECCSCEEECCCEEECCCT
T ss_pred             eecccccccCCccccccc
Confidence            889999999999987653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.37  E-value=6.1e-07  Score=76.35  Aligned_cols=81  Identities=10%  Similarity=-0.025  Sum_probs=64.8

Q ss_pred             HHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEE-eCCCc--eEEe
Q psy8791         237 IGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFK-SEDKT--ERLP  311 (706)
Q Consensus       237 ~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~-~~~~g--~~i~  311 (706)
                      ..+..+++.|.    +++++++.+++++  ++++.+.+++.|+++||++++++.+.+++.+++.+.+. ...+|  ++++
T Consensus        40 E~A~~~~~~G~----~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~  115 (125)
T d1ojta2          40 EMGTVYSTLGS----RLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQR  115 (125)
T ss_dssp             HHHHHHHHHTC----EEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEE
T ss_pred             HHHHHhhcCCC----EEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEE
Confidence            33456777875    4999999999987  89999999999999999999999999998665544332 22233  4799


Q ss_pred             ecEEEECCCC
Q psy8791         312 YAIMHVTPPM  321 (706)
Q Consensus       312 ~D~vI~a~G~  321 (706)
                      +|.|++|+|.
T Consensus       116 ~D~vl~A~GR  125 (125)
T d1ojta2         116 YDAVLVAAGR  125 (125)
T ss_dssp             ESCEEECCCE
T ss_pred             cCEEEEecCC
Confidence            9999999983

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3.4e-07  Score=84.68  Aligned_cols=113  Identities=18%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      .+++||+|||||++|++||..+++.  +.+++|||+.+..          |.+.....+                     
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~--g~~v~iie~~~~~----------g~~~~~~~i---------------------   49 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKG----------GQLTTTTEV---------------------   49 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTT--TCCCEEECCSSTT----------GGGGGCSBC---------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEEeeccc----------ccccccchh---------------------
Confidence            4678999999999999999999998  8899999975431          111110000                     


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccccccccccccchhh-hccCCcEEEeceEEEEEcCCCeEE-cCCCcEE
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNRVR-TQAGSEI  622 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~~~~~~v~~id~~~~~V~-~~~g~~i  622 (706)
                                      +.     + +.++.    .....++...... ....++++..++|+.++....... ......+
T Consensus        50 ----------------~~-----~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~  103 (190)
T d1trba1          50 ----------------EN-----W-PGDPN----DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEY  103 (190)
T ss_dssp             ----------------CC-----S-TTCCS----SCBHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEE
T ss_pred             ----------------hh-----h-hcccc----ccchHHHHHHHHHHHHhcCcEEecceeEEEecCCCcEEEEEeeeeE
Confidence                            00     0 00000    0001111121221 222578888889999998776432 2344589


Q ss_pred             eeCEEEEecCcccC
Q psy8791         623 SYEYMIVASGIQMY  636 (706)
Q Consensus       623 ~yd~lViAtGs~~~  636 (706)
                      ..+.+++|+|..++
T Consensus       104 ~~~~viva~G~~~~  117 (190)
T d1trba1         104 TCDALIIATGASAR  117 (190)
T ss_dssp             EEEEEEECCCEEEC
T ss_pred             eeeeeeeecceeee
Confidence            99999999998765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.30  E-value=1.5e-07  Score=93.08  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.9

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+|||||||||.+|+++|+.|+++  +.+|+|||+.+.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~--G~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            479999999999999999999998  899999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=5.6e-07  Score=76.36  Aligned_cols=90  Identities=14%  Similarity=0.136  Sum_probs=59.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccc-ccccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~-~~v~~  107 (706)
                      .++++|||||+.|+-+|..|++.  |.+|||+++++..   |.        .++ .+...+ +.+.+.+++++. .+|++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~~~l---~~--------~D~-~~~~~l~~~l~~~Gv~i~~~~~v~~   85 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGI--GLDVTVMVRSILL---RG--------FDQ-DMANKIGEHMEEHGIKFIRQFVPTK   85 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS---TT--------SCH-HHHHHHHHHHHHTTEEEEESCEEEE
T ss_pred             CCeEEEECCCccHHHHHHHHhhc--CCeEEEEEechhh---cc--------CCH-HHHHHHHHHHHHCCCEEEECCEEEE
Confidence            35899999999999999999999  9999999975411   11        111 122222 333447999987 46666


Q ss_pred             EEcC----CC--EEEeCC---C--eEEEecEEEEccc
Q psy8791         108 FDPE----NN--RVRTQA---G--SEISYEYMIVASG  133 (706)
Q Consensus       108 id~~----~~--~v~~~~---g--~~~~yd~lviAtG  133 (706)
                      +...    ..  .+++..   +  ...++|.|++|+|
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          86 IEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            6431    11  233322   2  2457999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.30  E-value=4.9e-07  Score=76.94  Aligned_cols=90  Identities=22%  Similarity=0.416  Sum_probs=63.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccc-ccccCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM-KSVLPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~-~~v~~  107 (706)
                      .++++|||||+.|+-+|..+++.  |.+|||++++++..  |.        .++ ++...+ +.+.+.++++.. .++++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~--G~~Vtvi~~~~~~l--~~--------~d~-~~~~~l~~~l~~~GI~i~~~~~v~~   91 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFASEIV--PT--------MDA-EIRKQFQRSLEKQGMKFKLKTKVVG   91 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSSSSS--TT--------SCH-HHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred             CCeEEEEccchHHHHHHHHHHhc--CCeEEEEEEccccC--ch--------hhh-cchhhhhhhhhcccceEEcCCceEE
Confidence            46899999999999999999999  99999999999632  11        111 122222 233347899986 67888


Q ss_pred             EEcCCC--EEEe--C-CC--eEEEecEEEEcc
Q psy8791         108 FDPENN--RVRT--Q-AG--SEISYEYMIVAS  132 (706)
Q Consensus       108 id~~~~--~v~~--~-~g--~~~~yd~lviAt  132 (706)
                      |+..+.  ++.+  . +|  +++++|++++|.
T Consensus        92 i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          92 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            986544  3333  2 33  458999999873

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=5.4e-08  Score=93.37  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=34.6

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |.+.|||+|||||+||++||.++++.  +.+|+|||+.+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~--G~kV~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCC
Confidence            56789999999999999999999998  899999998654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.6e-06  Score=73.44  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=64.2

Q ss_pred             eeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCC--CEEEE
Q psy8791         226 KCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLAN--KEAVF  301 (706)
Q Consensus       226 ~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~~v~~  301 (706)
                      .++|++.  ++..+..+.++|.    +|+++++.+++++  ++++.+.+++.|+++||++++++.+++++.++  ..+.+
T Consensus        28 IiG~G~i--g~E~A~~l~~lG~----~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~  101 (122)
T d1v59a2          28 IIGGGII--GLEMGSVYSRLGS----KVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEI  101 (122)
T ss_dssp             EECCSHH--HHHHHHHHHHTTC----EEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEE
T ss_pred             EECCCch--HHHHHHHHHhhCc----ceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEE
Confidence            3455432  3334456777775    4999999999988  88999999999999999999999999997543  23332


Q ss_pred             E--e--CCCceEEeecEEEEC
Q psy8791         302 K--S--EDKTERLPYAIMHVT  318 (706)
Q Consensus       302 ~--~--~~~g~~i~~D~vI~a  318 (706)
                      .  .  +++++++++|.|++|
T Consensus       102 ~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         102 VVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEETTTTEEEEEEESEEEEC
T ss_pred             EEEeCCCCCeEEEEeCEEEEC
Confidence            2  1  123468999999976

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.25  E-value=2.9e-06  Score=71.96  Aligned_cols=79  Identities=9%  Similarity=0.086  Sum_probs=62.4

Q ss_pred             HHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE--EEEEeCCCc--eEE
Q psy8791         237 IGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE--AVFKSEDKT--ERL  310 (706)
Q Consensus       237 ~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--v~~~~~~~g--~~i  310 (706)
                      ..+..+.++|.    +|+++++.+++++  ++++.+.+.+.|++.||++++++.+.+++.+++.  +.+...++|  +++
T Consensus        39 E~A~~~~~~G~----~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i  114 (123)
T d1dxla2          39 EMGSVWGRIGS----EVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTII  114 (123)
T ss_dssp             HHHHHHHHHTC----EEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEE
T ss_pred             HHHHHHHhcCC----eEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEE
Confidence            33456777874    5999999999987  7899999999999999999999999999865543  344433333  468


Q ss_pred             eecEEEECC
Q psy8791         311 PYAIMHVTP  319 (706)
Q Consensus       311 ~~D~vI~a~  319 (706)
                      ++|.|++|.
T Consensus       115 ~~D~vLvAA  123 (123)
T d1dxla2         115 EADVVLVSA  123 (123)
T ss_dssp             EESEEECCC
T ss_pred             EcCEEEEcC
Confidence            999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.24  E-value=4.4e-07  Score=89.23  Aligned_cols=36  Identities=19%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++.+||||||||.+|+++|..|.++  +.+|+|||+++
T Consensus         2 ~~~~DvvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~   37 (276)
T d1ryia1           2 KRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   37 (276)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            4578999999999999999999998  78999999965

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.24  E-value=8.9e-08  Score=91.13  Aligned_cols=141  Identities=18%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccccC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFD  546 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (706)
                      .+|+||||||+||++||..+++.  +.+|+|||+...           ||.|.. ..+.|.+.+............   .
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~--G~kV~vIEk~~~-----------GG~~~~-~~~~~~~~~~~~~~~~~~~~~---~   65 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKGNL-----------GGVCLN-VGCIPSKALISASHRYEQAKH---S   65 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT-----------THHHHH-TSHHHHHHHHHHHHHHHHHHT---C
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCEEEEEecCCC-----------Ccceec-cccccccccccccchhhhhhh---h
Confidence            47999999999999999999998  889999998542           343332 222333333222110000000   0


Q ss_pred             CCceEEEeeecceecCCCcccccCccccccc-ccccccccccchhhhcc-CCcEEEeceEEEEEcCCCeEEcC-CCcEEe
Q psy8791         547 SSYTFTILILHSIVEPTDDHYYQPMFTLIGG-GMKKLSDSRRPMKSVLP-SGATWVKDKIVSFDPENNRVRTQ-AGSEIS  623 (706)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~gv~~~~~~v~~id~~~~~V~~~-~g~~i~  623 (706)
                      ......        .....    ..+..... .....+.+...+..... .+++++.+++.+.+.....+... +..++.
T Consensus        66 ~~~~~~--------~~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~  133 (223)
T d1ebda1          66 EEMGIK--------AENVT----IDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYT  133 (223)
T ss_dssp             GGGTEE--------CCSCE----ECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEE
T ss_pred             hhhccc--------chhhe----eeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEe
Confidence            000000        00000    00000000 00001111122222333 68999999999888776666544 346799


Q ss_pred             eCEEEEecCcccC
Q psy8791         624 YEYMIVASGIQMY  636 (706)
Q Consensus       624 yd~lViAtGs~~~  636 (706)
                      .|.+|||+|+.|.
T Consensus       134 ~~~iiIa~g~~p~  146 (223)
T d1ebda1         134 FKNAIIATGSRPI  146 (223)
T ss_dssp             CSEEEECCCEEEC
T ss_pred             cccEEEEcCCCcc
Confidence            9999999987654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=4.2e-07  Score=88.04  Aligned_cols=59  Identities=8%  Similarity=-0.073  Sum_probs=46.8

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEe--CCCCEEEEEeCCCceEEeecEEEECCCCCch
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEID--LANKEAVFKSEDKTERLPYAIMHVTPPMGPV  324 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~  324 (706)
                      ...+.+.+.+.+++.|++|+++++|++|.  .++++++.+. .+|++++||.||..+..-|+
T Consensus       235 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         235 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhccC
Confidence            35788899999999999999999999984  4555666544 37899999999987555554

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.22  E-value=1.1e-07  Score=91.03  Aligned_cols=37  Identities=27%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+|+|||||+||++||.+|++...+.+|+|+|+.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            3799999999999999999987667899999987654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.15  E-value=1.4e-06  Score=80.61  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..+||+|||||++|++||..+++.  +.+++|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~--g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc--CCcEEEEEeecc
Confidence            468999999999999999999998  889999997544

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.14  E-value=1.9e-07  Score=90.09  Aligned_cols=156  Identities=15%  Similarity=0.178  Sum_probs=81.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCcccccccccc
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVS  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (706)
                      +.|||||||+|+||++||.++++.  + .+|+|+|+......  ......||.| ++..+.|.|.++............ 
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~--g~k~V~vie~~~~~~~--~~~~~iGGtc-~~~gcip~K~l~~~a~~~~~~~~~-   75 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL--HKKRVAVIDLQKHHGP--PHYAALGGTC-VNVGCVPKKLMVTGANYMDTIRES-   75 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH--HCCCEEEEESCSSSBT--TTBSCTTCHH-HHHSHHHHHHHHHHHHHHHHHHHG-
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc--CCCEEEEEEEeccCCc--cccccccccc-ccccchhhhhcccccccccccccc-
Confidence            579999999999999999999887  4 46899998664321  1112234444 344456766655544222111000 


Q ss_pred             cCCCceEEEeeecceecCCCcccccCcccccccc-cccccccccchhhhcc--CCcEEEeceEEEEEcCCCeEEcC----
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGG-MKKLSDSRRPMKSVLP--SGATWVKDKIVSFDPENNRVRTQ----  617 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~gv~~~~~~v~~id~~~~~V~~~----  617 (706)
                        ..+.+.       +.....   .+.|+.+... ......+...+...+.  .+++++++.....+.........    
T Consensus        76 --~~~Gi~-------~~~~~v---~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~  143 (240)
T d1feca1          76 --AGFGWE-------LDRESV---RPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPN  143 (240)
T ss_dssp             --GGGTEE-------CCGGGC---EECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTT
T ss_pred             --cccccc-------cccccc---ccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeecccccccccccccccccc
Confidence              001110       000000   0001100000 0001111122233332  47889999888877654332221    


Q ss_pred             --CCcEEeeCEEEEecCcccCccC
Q psy8791         618 --AGSEISYEYMIVASGIQMYYDR  639 (706)
Q Consensus       618 --~g~~i~yd~lViAtGs~~~~p~  639 (706)
                        ..+.+..|.++||||++|....
T Consensus       144 ~~~~e~i~~~~i~ia~G~~p~~~~  167 (240)
T d1feca1         144 SAVLETLDTEYILLATGSWPQHLG  167 (240)
T ss_dssp             SCEEEEEEEEEEEECCCEEECCCC
T ss_pred             ccceEEEecceEEEecCCceeEcc
Confidence              2257899999999999987553

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.13  E-value=1.2e-06  Score=85.41  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=32.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..||+|||||+||+++|..|++.  +.+|+|+|+++..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~~~   39 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQP   39 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            45899999999999999999998  8999999987653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=1.2e-07  Score=91.16  Aligned_cols=38  Identities=18%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhc-----CCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRL-----GKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~-----~~~~i~vid~~~~~  504 (706)
                      +++|+|||||+|||+||..|+++.     .+.+|+|+|+.+..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            468999999999999999999872     23689999997754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.2e-06  Score=89.28  Aligned_cols=40  Identities=23%  Similarity=0.402  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      +..+.||||||||+|||+||++|+++  |++|+|+|++++..
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVG   41 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSSB
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCc
Confidence            44567899999999999999999999  99999999998743

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.02  E-value=2.4e-05  Score=65.92  Aligned_cols=79  Identities=13%  Similarity=0.081  Sum_probs=57.9

Q ss_pred             HHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCC----CCE--EEEEeCCCc-
Q psy8791         237 IGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLA----NKE--AVFKSEDKT-  307 (706)
Q Consensus       237 ~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~~~--v~~~~~~~g-  307 (706)
                      ..+..+++.|..    |+++.+. .+++  ++++++.+++.|+++||++++++.|++++..    ...  ++....+++ 
T Consensus        34 E~A~~l~~lG~~----Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  108 (122)
T d1h6va2          34 ECAGFLAGIGLD----VTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEE  108 (122)
T ss_dssp             HHHHHHHHTTCC----EEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCE
T ss_pred             HHHHHHhhcCCe----EEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCc
Confidence            334467888854    8888864 5666  8899999999999999999999999888532    122  333333233 


Q ss_pred             -eEEeecEEEECCC
Q psy8791         308 -ERLPYAIMHVTPP  320 (706)
Q Consensus       308 -~~i~~D~vI~a~G  320 (706)
                       ..+++|.|++|+|
T Consensus       109 ~~~~~~D~vl~AiG  122 (122)
T d1h6va2         109 TIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEESEEECCCC
T ss_pred             EEEEECCEEEEEeC
Confidence             3567999999998

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.00  E-value=4.6e-07  Score=86.93  Aligned_cols=156  Identities=17%  Similarity=0.214  Sum_probs=80.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCCcCCcceEEeeccccccccccccccccCCCCccccccccc-c
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV-S  544 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~l~~~~~~~~~~~~~-~  544 (706)
                      +||||+|||||+||++||.++++.. ..+|+|+|+.....+. ....+ ||.| ++..+.|.|.++..++........ .
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g-~k~V~iie~~~~~~~~-~~~~l-GG~c-~n~g~ip~k~l~~~a~~~~~~~~~~~   77 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLY-KKRVAVIDVQMVHGPP-FFSAL-GGTC-VNVGCVPKKLMVTGAQYMEHLRESAG   77 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTS-CCCEEEEESCSSSBTT-TBCCT-THHH-HHHSHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEeecccCcc-ccccc-cccc-cccccccchhhhhhHHHHHHHHHHHh
Confidence            6899999999999999999999871 2468888875432211 11122 3333 344455766666554322111110 0


Q ss_pred             cCCCceEEEeeecceecCCCcccccCccccccccc-ccccccccchhhhc--cCCcEEEeceEEEEEcCCCeEEcCC---
Q psy8791         545 FDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGM-KKLSDSRRPMKSVL--PSGATWVKDKIVSFDPENNRVRTQA---  618 (706)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~gv~~~~~~v~~id~~~~~V~~~~---  618 (706)
                      +.  ..+         +...   ....+..+.... .............+  ..+++++.+.....+..........   
T Consensus        78 ~G--~~~---------~~~~---~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~  143 (238)
T d1aoga1          78 FG--WEF---------DRTT---LRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPA  143 (238)
T ss_dssp             GT--EEC---------CGGG---CEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTT
T ss_pred             cC--Ccc---------cCcc---ccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeecccccccccccccccc
Confidence            00  000         0000   000010000000 00011111222232  2689999998877766533332211   


Q ss_pred             ---CcEEeeCEEEEecCcccCccC
Q psy8791         619 ---GSEISYEYMIVASGIQMYYDR  639 (706)
Q Consensus       619 ---g~~i~yd~lViAtGs~~~~p~  639 (706)
                         .+.++.|.+++++|..|..+.
T Consensus       144 ~~~~~~~~a~~v~i~~~~~~~~~~  167 (238)
T d1aoga1         144 SAVKERLETEHILLASGSWPHMPN  167 (238)
T ss_dssp             SCEEEEEEBSCEEECCCEEECCCC
T ss_pred             ccccccccccceeeeccccccccc
Confidence               246899999999999987653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.98  E-value=2.5e-06  Score=82.71  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++||||||||++||++|++|+++  |++|+|||++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            3467999999999999999999999  89999999975

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.94  E-value=2.8e-06  Score=78.52  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             EeecEEEECCCCCchhh----hhc-CCC-CCCCCceeeCccccccCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHH
Q psy8791         310 LPYAIMHVTPPMGPVPE----LAT-SRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL  383 (706)
Q Consensus       310 i~~D~vI~a~G~~~~~~----~~~-~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni  383 (706)
                      ..+|.+++++|......    ... ... ....+....+..+++ ++.+.||+.||++...  .++..|..+|+.+|..+
T Consensus        91 ~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~g~vigg~--~~av~a~~~g~~~a~~v  167 (196)
T d1gtea4          91 EGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQ-TSEPWVFAGGDIVGMA--NTTVESVNDGKQASWYI  167 (196)
T ss_dssp             TTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCB-CSSTTEEECSGGGCSC--CCHHHHHHHHHHHHHHH
T ss_pred             cccceeeEEeccccCCccccccccccccccccccceeccccccC-CCcccccccccccCCc--chHHHHHHHHhhhehhH
Confidence            45677777877654321    111 122 444566666664455 8899999999998764  36777888888888888


Q ss_pred             HHHHcCC
Q psy8791         384 SAVMKNR  390 (706)
Q Consensus       384 ~~~l~g~  390 (706)
                      .+.+.+.
T Consensus       168 ~r~~~~~  174 (196)
T d1gtea4         168 HKYIQAQ  174 (196)
T ss_dssp             HHHHHHH
T ss_pred             hhccHhh
Confidence            7776554

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.94  E-value=1.8e-06  Score=86.18  Aligned_cols=32  Identities=16%  Similarity=0.484  Sum_probs=29.0

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCC-cEEEECCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTD  502 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~  502 (706)
                      ||||||||.+|+++|..|.++  +. +|+|||+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~--G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTR--GWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCCcEEEEeCCC
Confidence            899999999999999999987  64 799999874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.3e-06  Score=83.82  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      ++||||||||++||+||++|++.  |.+|+|||++++..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECCCCcc
Confidence            46899999999999999999998  89999999999743

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.89  E-value=4.1e-06  Score=83.78  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhcC--CCCCCCCceeeCc
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATS--RLVDQSGYVNVDK  343 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~~--~l~~~~G~i~vd~  343 (706)
                      ....+.++..|...+|++.+++.+.               +++...+|.||++.   |.+.+-+-  |-+...+....-+
T Consensus       195 ~Gyt~~~e~mL~~~~i~v~ln~~~~---------------~~~~~~~d~vI~Tg---piD~~f~~~~g~l~~~~~~~~~~  256 (314)
T d2bi7a1         195 CGYTQMIKSILNHENIKVDLQREFI---------------VEERTHYDHVFYSG---PLDAFYGYQYGRLRQMGEMALLE  256 (314)
T ss_dssp             THHHHHHHHHHCSTTEEEEESCCCC---------------GGGGGGSSEEEECS---CHHHHTTTTTCCCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHhCCCCeeecccccc---------------ccccccceeEEEec---cHHHHhccCceecCccCcHHHHH
Confidence            3455667777777889988876531               34456789999873   33333331  2222222111111


Q ss_pred             cccc-cCCCCCEEEccccCCCCCCchHHHHHHhHHHHHHHHHHHHcCCC
Q psy8791         344 ATLQ-HVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRA  391 (706)
Q Consensus       344 ~~l~-~~~~~~Ifa~GD~~~~~~~~~~~~a~~qg~~~a~ni~~~l~g~~  391 (706)
                      .+.+ ....+||+.+|-++.+.. -....|+.+|-.+++++.+.++...
T Consensus       257 ~y~~~~~~~~~~~~~grl~~y~y-~~m~~~i~~al~~~~~~~~~~~~~~  304 (314)
T d2bi7a1         257 KYLSLAENETNITFVGRLGTYRY-LDMDVTIAEALKTAEVYLNSLTENQ  304 (314)
T ss_dssp             HHHHHHTTCSSEEECHHHHTTCC-CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCcEEeecCcccee-cCHHHHHHHHHHHHHHHHHhhhcCC
Confidence            1111 235689999999998754 3456889999999999988887653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.88  E-value=2.8e-05  Score=68.81  Aligned_cols=83  Identities=11%  Similarity=-0.062  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHcCCCCCcEEEEEeCCCcCCC--chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEee
Q psy8791         235 VLIGDEYLRKHKKRDAAKLTYCTGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPY  312 (706)
Q Consensus       235 ~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~  312 (706)
                      ++..++.+.++|.    +|+++++.+.+++  ++.....+.+.|++.||++++++.+.+|+.++  +....   ......
T Consensus        53 g~e~A~~la~~G~----~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--v~l~~---~~~~~~  123 (156)
T d1djqa2          53 APSLAEKLATAGH----EVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR--MEIYN---IWGDGS  123 (156)
T ss_dssp             HHHHHHHHHHTTC----EEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTE--EEEEE---TTCSCS
T ss_pred             HHHHHHHHHHcCC----eEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcc--eEEEe---eecccc
Confidence            4455677888885    4999999988875  56777889999999999999999999998765  44432   223345


Q ss_pred             cEEEECCCCCchhh
Q psy8791         313 AIMHVTPPMGPVPE  326 (706)
Q Consensus       313 D~vI~a~G~~~~~~  326 (706)
                      +.++..+|..|+..
T Consensus       124 ~~v~~~~g~~~~~~  137 (156)
T d1djqa2         124 KRTYRGPGVSPRDA  137 (156)
T ss_dssp             CCCCCCTTSCSSCC
T ss_pred             ceeeeeeEEEeccc
Confidence            66677777766633

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.79  E-value=2.2e-05  Score=69.48  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             CCcEEEE--CCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEE-ceeE
Q psy8791          30 SCKLLVV--GGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVK-DKIV  106 (706)
Q Consensus        30 ~~~VvII--GgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~v~  106 (706)
                      ...++|+  |||+.|+.+|..|+++  |.+|||+++.+....          .........-.+.+.+.+++++. .++.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~--G~~Vtlv~~~~~~~~----------~~~~~~~~~~~~~l~~~GV~i~~~~~v~  106 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATA--GHEVTIVSGVHLANY----------MHFTLEYPNMMRRLHELHVEELGDHFCS  106 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSCTTTH----------HHHTTCHHHHHHHHHHTTCEEEETEEEE
T ss_pred             CCceEEEecCCChHHHHHHHHHHHc--CCeEEEEecCCcccc----------ccchhHHHHHHHHHhhccceEEeccEEE
Confidence            3456665  9999999999999999  999999999885211          11111111223344457899887 5778


Q ss_pred             EEEcCCCEEEeC---------------------CCeEEEecEEEEcccc
Q psy8791         107 SFDPENNRVRTQ---------------------AGSEISYEYMIVASGI  134 (706)
Q Consensus       107 ~id~~~~~v~~~---------------------~g~~~~yd~lviAtG~  134 (706)
                      +|+.+...+...                     +...+++|.+++++|.
T Consensus       107 ~i~~~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtgR  155 (156)
T d1djqa2         107 RIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR  155 (156)
T ss_dssp             EEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred             EecCcceEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEecC
Confidence            887654333211                     1245788888888874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.74  E-value=1.2e-05  Score=78.65  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=32.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCC-cEEEECCCCCCc
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHY  505 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~~~~  505 (706)
                      +||+|||||+||+++|..|++.  +. +|+|+|+++...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCCCCC
Confidence            5899999999999999999997  74 899999987654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=7.2e-06  Score=81.32  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |+||||||||++|+++|+.|++.  +.+|+|+|++++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~~i   36 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHI   36 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECCCCc
Confidence            78999999999999999999987  7899999998875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=9.4e-06  Score=78.06  Aligned_cols=39  Identities=15%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |.+.|||||||||++|++||..|++.  +.+|+|||++++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~--G~~V~vlE~~~~~   40 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD--GKKVLHIDKQDHY   40 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC--CCCEEEEcCCCCC
Confidence            55689999999999999999999998  8899999998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.67  E-value=1.4e-05  Score=78.72  Aligned_cols=34  Identities=15%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++|+|||||++||++|..|+++  |++|+|||+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            45899999999999999999999  99999999987

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.59  E-value=2.2e-05  Score=76.64  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=58.5

Q ss_pred             hCCceEEcCCceEEEeCCCCEEEEEeC--C-CceEEeecEEEECCCCCch--hhhhcCCCCCCCCceeeCccccccCCCC
Q psy8791         278 GRGVDVHKGKALVEIDLANKEAVFKSE--D-KTERLPYAIMHVTPPMGPV--PELATSRLVDQSGYVNVDKATLQHVKYS  352 (706)
Q Consensus       278 ~~gV~v~~~~~v~~i~~~~~~v~~~~~--~-~g~~i~~D~vI~a~G~~~~--~~~~~~~l~~~~G~i~vd~~~l~~~~~~  352 (706)
                      ..++.+..++.++.+..+++.+.+...  + +.+++.+|++|.|-|....  ........       .... .+......
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~~-------~~~~-~~~~~~~~  189 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQR-------PLRD-PLPHWGRG  189 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCC-------CCCC-CCSCCCBT
T ss_pred             ccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccceeeeeeccccc-------cccc-cccccccC
Confidence            357888888888888766555543321  1 2257999999999998765  22211110       0011 11224457


Q ss_pred             CEEEccccCCCCCCch---HHHHHHhHHHHHHHH
Q psy8791         353 NVFAIGDCSNLPTSKT---AAAVAGQCKVVYDNL  383 (706)
Q Consensus       353 ~Ifa~GD~~~~~~~~~---~~~a~~qg~~~a~ni  383 (706)
                      ++..+||++....|..   +..+...+..++..+
T Consensus       190 ~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l  223 (288)
T d3c96a1         190 RITLLGDAAHLMYPMGANGASQAILDGIELAAAL  223 (288)
T ss_dssp             TEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHH
T ss_pred             cceecccccceeCCccccchhhhhhhHHHHHHHH
Confidence            8999999987655532   334555666666555

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.54  E-value=2.2e-05  Score=76.90  Aligned_cols=36  Identities=33%  Similarity=0.482  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+||+|||||+|||+||.+|+++ .|++|+|||+++.
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~   68 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCC
Confidence            46899999999999999999763 2899999999985

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.3e-05  Score=78.10  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY   68 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~   68 (706)
                      ..+||+|||||+|||+||++|+++.++++|+|+|++++..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            3578999999999999999999876689999999998643

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=8.5e-05  Score=67.37  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      |||+|||||++|+.||..+.+.  +.+++|||++
T Consensus         2 yDViIIGgGpaGl~AAi~aar~--G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARK--GIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHc--CCeEEEEEEe
Confidence            7999999999999999999998  8899999974

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=5.7e-05  Score=67.15  Aligned_cols=39  Identities=10%  Similarity=0.229  Sum_probs=27.7

Q ss_pred             CCcEEEE-ceeEEEEcCCCEEEeCCC-eEEEecEEEEcccc
Q psy8791          96 SGATWVK-DKIVSFDPENNRVRTQAG-SEISYEYMIVASGI  134 (706)
Q Consensus        96 ~~v~~i~-~~v~~id~~~~~v~~~~g-~~~~yd~lviAtG~  134 (706)
                      .+++++. .++..|+.+...+...+. +.+++|.+|+|+|-
T Consensus       121 ~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         121 RGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             TTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             CCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            6788775 678888866544444332 35799999999994

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=0.00019  Score=62.71  Aligned_cols=38  Identities=16%  Similarity=0.090  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCCcc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHY   68 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~~~   68 (706)
                      ...+|||||||..|+-||..+.|.  +. +|+++.+.+...
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~--GA~~V~vi~rr~~~~   82 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRC--GARRVFLVFRKGFVN   82 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHT--TCSEEEEECSSCGGG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHc--CCcceeEEEeCChhh
Confidence            345899999999999999999998  64 588999887543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.42  E-value=3.6e-05  Score=76.86  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...||||||||+|||+||.+|++.  |.+|+||||.+.
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~~   53 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPF   53 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            457999999999999999999999  899999999874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.42  E-value=4.4e-05  Score=77.25  Aligned_cols=41  Identities=27%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhh---cCCCeEEEEcCCCCccc
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSK---LGKGQVSIVEPTDDHYY   69 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~---~~~~~Vtlie~~~~~~~   69 (706)
                      +.+||+|||||++||++|..|++.   ..|++|+|||+++....
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~   49 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY   49 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence            358999999999999999999742   23899999999886444

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.32  E-value=7.7e-05  Score=76.04  Aligned_cols=109  Identities=14%  Similarity=0.145  Sum_probs=65.9

Q ss_pred             hCCceEEcCCceEEEeCC--CCEE---EEEeCCCce--EEeecEEEECCCCCch-hhhhcCCCC----------------
Q psy8791         278 GRGVDVHKGKALVEIDLA--NKEA---VFKSEDKTE--RLPYAIMHVTPPMGPV-PELATSRLV----------------  333 (706)
Q Consensus       278 ~~gV~v~~~~~v~~i~~~--~~~v---~~~~~~~g~--~i~~D~vI~a~G~~~~-~~~~~~~l~----------------  333 (706)
                      +.|+++++++.|.+|.-+  +.++   .+....+|+  ++.++.||++.|..-. ..+..+++.                
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~  309 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS  309 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTT
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccc
Confidence            457999999999998653  2333   333344554  5789999999997655 333333220                


Q ss_pred             --------CCC-CceeeCccccccCCCCCEEEccccCCCCCCc---hHHHHHHhHHHHHHHHHHHHc
Q psy8791         334 --------DQS-GYVNVDKATLQHVKYSNVFAIGDCSNLPTSK---TAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       334 --------~~~-G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~~~---~~~~a~~qg~~~a~ni~~~l~  388 (706)
                              +.. ..-.||+ .+++-+.+|+|++| +..+|...   ....+..-|..+|+.|.+.++
T Consensus       310 ~g~h~mG~~~~~~~~vvd~-~~~v~g~~nlyv~d-~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~  374 (379)
T d2f5va1         310 LGSHRMGFDEKEDNCCVNT-DSRVFGFKNLFLGG-CGNIPTAYGANPTLTAMSLAIKSCEYIKQNFT  374 (379)
T ss_dssp             TTBTCBCSCTTTTTCSBCT-TCBBTTCSSEEECS-GGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cceeecccCCCCCCccCCC-CCcccccCCEEEeC-CcccCCccccCcHHHHHHHHHHHHHHHHHhhc
Confidence                    000 0126787 67877899999865 44444321   123445556677788876543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.27  E-value=5.8e-05  Score=75.09  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=33.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +++|+|||||++|++||..|++.  +.+|+|+|++++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~~i   37 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHI   37 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCCCC
Confidence            56899999999999999999987  7999999998875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.26  E-value=6.2e-05  Score=74.51  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||+||++||..|++.  +.+|+|+|+++..
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~   36 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKA   36 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--SCEEEEECSSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            4799999999999999999998  8999999997754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.26  E-value=0.0007  Score=55.06  Aligned_cols=76  Identities=18%  Similarity=0.238  Sum_probs=54.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccCCCcEEEEceeEEE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSF  108 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~i  108 (706)
                      ..++|+|||+|.+|+-.|..|++.  .-+++++.+.+.....                        ..++.. ...+..+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~--ak~v~~~~~r~~~~~~------------------------~~~~~~-~~~i~~~   83 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPV--AKHPIYQSLLGGGDIQ------------------------NESLQQ-VPEITKF   83 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTT--SCSSEEEECTTCCSCB------------------------CSSEEE-ECCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHh--cCEEEEEEecCccccc------------------------ccccee-cCCeeEE
Confidence            458999999999999999999987  5566666665532110                        011111 2346678


Q ss_pred             EcCCCEEEeCCCeEEE-ecEEEEc
Q psy8791         109 DPENNRVRTQAGSEIS-YEYMIVA  131 (706)
Q Consensus       109 d~~~~~v~~~~g~~~~-yd~lviA  131 (706)
                      ++..+.+.+.||..+. .|.+|+|
T Consensus        84 ~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          84 DPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             ETTTTEEEETTTEEECCCSEEEEC
T ss_pred             ecCCCEEEEcCCCEEeCCCEEEEC
Confidence            8888899999998876 6999986

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.25  E-value=6.7e-05  Score=73.95  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=32.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +||+|||||+||++||..|+++  +.+|+|+|+++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~   35 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSR--GTDAVLLESSARL   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCC
Confidence            4899999999999999999998  8999999998764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=7.6e-05  Score=73.93  Aligned_cols=92  Identities=15%  Similarity=0.119  Sum_probs=62.0

Q ss_pred             HHHHHHHHhCCceEEcCCceEEEeCCCC-------EE---EEEeCCCce--EEeecEEEECCCCCchh------------
Q psy8791         270 EKIHDILIGRGVDVHKGKALVEIDLANK-------EA---VFKSEDKTE--RLPYAIMHVTPPMGPVP------------  325 (706)
Q Consensus       270 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~-------~v---~~~~~~~g~--~i~~D~vI~a~G~~~~~------------  325 (706)
                      ..+.+.+++.+++++.++.+.++..+++       ++   ......+++  .+.++-||+|+|--...            
T Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TG  221 (305)
T d1chua2         142 TLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSG  221 (305)
T ss_dssp             CCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSC
T ss_pred             HHHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceec
Confidence            3345677889999999999888764322       23   222233343  47899999999853320            


Q ss_pred             ----hhhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCC
Q psy8791         326 ----ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNL  363 (706)
Q Consensus       326 ----~~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~  363 (706)
                          .....|. +.+-+++.+++ +.+ |+.|++||+|+++..
T Consensus       222 DG~~mA~~aGa~l~~m~~iq~~~-~g~-t~~~g~~a~G~~~~~  262 (305)
T d1chua2         222 DGIAMAWRAGCRVANCGGVMVDD-HGR-TDVEGLYAIGEVSYT  262 (305)
T ss_dssp             HHHHHHHHTTCCEECSCEEECCT-TCB-CSSBTEEECGGGEEC
T ss_pred             ccEeeccccceeeEecceeEECC-ccc-CCCCCceecccEEEe
Confidence                1223454 56678899999 555 889999999997543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=7.7e-05  Score=75.20  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=33.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +..||||||||.|||+||..|++.  +.+|+|+|+++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            456899999999999999999998  8899999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.21  E-value=7e-05  Score=70.78  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..|||+|||||+||++||..+++.  +.+|+|||+++.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~--G~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccCC
Confidence            469999999999999999999998  889999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.20  E-value=8.9e-05  Score=74.29  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      +.++|+|||||+||++||..|+++  +.+|+|+|+++..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~~~   65 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERP   65 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            456899999999999999999998  8999999997754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.18  E-value=9e-05  Score=71.60  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCC-cEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~-~i~vid~~~~~  504 (706)
                      .||+|||||+||++||..|+++  +. +|+|+|+++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA--GITDLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCCCC
Confidence            3799999999999999999998  64 79999998753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.18  E-value=8.5e-05  Score=71.35  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ..+||||||||.+|+++|..|+++  +.+|+|||++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            345899999999999999999998  78999999864

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00014  Score=72.14  Aligned_cols=119  Identities=9%  Similarity=0.097  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEE---EeCCCce--EEeecEEEECCCCCchh----------------h
Q psy8791         268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVF---KSEDKTE--RLPYAIMHVTPPMGPVP----------------E  326 (706)
Q Consensus       268 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~---~~~~~g~--~i~~D~vI~a~G~~~~~----------------~  326 (706)
                      +...+++..+..+|+++.++.+.++..+++.+..   ....+|+  .+.++.||+|||--...                .
T Consensus       137 ~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~m  216 (311)
T d1kf6a2         137 LHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGM  216 (311)
T ss_dssp             HHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHH
T ss_pred             HHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHH
Confidence            3344455566679999999999998776665543   2344665  45789999999843221                1


Q ss_pred             hhcCCC-CCCCCceeeCccccccCCCCCEEEccccCCCCC-------CchHHHHHHhHHHHHHHHHHHHc
Q psy8791         327 LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT-------SKTAAAVAGQCKVVYDNLSAVMK  388 (706)
Q Consensus       327 ~~~~~l-~~~~G~i~vd~~~l~~~~~~~Ifa~GD~~~~~~-------~~~~~~a~~qg~~~a~ni~~~l~  388 (706)
                      ....|. +-+-+++.+++ +.. +..+++|+.|++.....       ..........++.+++++.....
T Consensus       217 A~~aGa~l~dme~iq~~p-~~~-~~~~~~~~~~~~~~~g~~g~n~~~~~~~~e~~~~~~~~~~~~~~~~~  284 (311)
T d1kf6a2         217 ALSHGVPLRDMGGIETDQ-NCE-TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAA  284 (311)
T ss_dssp             HHTTTCCEESCCEEECCT-TSB-CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccceeecccccccc-cch-hcccCCCcCcceeeeeeEeccccccccccceeecChHHHHHHHHhhc
Confidence            122333 33446788888 544 67899999999865321       11223344456666666655543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=9.6e-05  Score=74.11  Aligned_cols=123  Identities=7%  Similarity=-0.012  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHhCCceEEcCCceEEEeC-CCCEE---EEEeCCCce--EEeecEEEECCCCCchhh-------------
Q psy8791         266 PFYAEKIHDILIGRGVDVHKGKALVEIDL-ANKEA---VFKSEDKTE--RLPYAIMHVTPPMGPVPE-------------  326 (706)
Q Consensus       266 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~~v---~~~~~~~g~--~i~~D~vI~a~G~~~~~~-------------  326 (706)
                      ..+...+.+..++.+++++.+..+..+.. +++.+   ......+|+  .+.++.||+|+|--..-+             
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG  222 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDG  222 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHH
Confidence            45666677778889999999988877643 33322   222333444  578999999999554311             


Q ss_pred             ---hhcCCC--CCCCCceeeCcc--------ccccCCCCCEEEccccCCCC-------CCchHHHHHHhHHHHHHHHHHH
Q psy8791         327 ---LATSRL--VDQSGYVNVDKA--------TLQHVKYSNVFAIGDCSNLP-------TSKTAAAVAGQCKVVYDNLSAV  386 (706)
Q Consensus       327 ---~~~~~l--~~~~G~i~vd~~--------~l~~~~~~~Ifa~GD~~~~~-------~~~~~~~a~~qg~~~a~ni~~~  386 (706)
                         ....|.  .|..|.++.+..        .-.-.-.|++||+|+|+...       .+.+...+.-.|+.+++.+...
T Consensus       223 ~~~a~~aGa~l~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~ag~~~~~~  302 (330)
T d1neka2         223 VGMAIRAGVPVQDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES  302 (330)
T ss_dssp             HHHHHTTTCCEESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccccccccccccccceeecccCCCceecccccccCcccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence               111222  344444444320        00001257999999997531       1123445666788888888766


Q ss_pred             Hc
Q psy8791         387 MK  388 (706)
Q Consensus       387 l~  388 (706)
                      ++
T Consensus       303 ~~  304 (330)
T d1neka2         303 IA  304 (330)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.08  E-value=0.00018  Score=72.77  Aligned_cols=37  Identities=32%  Similarity=0.559  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh--cCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSK--LGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~--~~~~~Vtlie~~~~   66 (706)
                      ..||||||||+|||+||.+|++.  ..|.+|+||||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            47999999999999999999863  24899999999873

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.07  E-value=0.00014  Score=74.20  Aligned_cols=39  Identities=26%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             ccccccCcchhHHHHHHHHHhh----cCCCcEEEECCCCCCcC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSR----LGKGQVSIVEPTDDHYY  506 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~----~~~~~i~vid~~~~~~~  506 (706)
                      +||||||||+||++||+.|++.    ..+.+|+|||+...+.+
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~   75 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA   75 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCC
Confidence            7999999999999999999872    24799999999887654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.04  E-value=0.00033  Score=71.22  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +..||||||+|+||+.+|.+|++.  |.+|+|+|+...
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~~   41 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMGRS   41 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence            457999999999999999999998  899999999754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.0025  Score=57.75  Aligned_cols=61  Identities=15%  Similarity=0.113  Sum_probs=39.2

Q ss_pred             eeeCChhHHHHHHHHHHHHHcCCCCCcEEEEEeCCCcCCC-----------chhHHHHHHHHHHhCCceEEcCCceE
Q psy8791         225 IKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFP-----------SPFYAEKIHDILIGRGVDVHKGKALV  290 (706)
Q Consensus       225 v~~~g~~~~~~~~~~~~l~~~g~~~~~~v~l~~~~~~~~~-----------~~~~~~~~~~~l~~~gV~v~~~~~v~  290 (706)
                      +.++|+|.  ++.++.++.++|..   .|++++..+.+.+           ...........+.+.+..+.....+.
T Consensus         8 aIIGaGpa--Gl~aA~~l~~~G~~---~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (196)
T d1gtea4           8 ALLGAGPA--SISCASFLARLGYS---DITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLS   79 (196)
T ss_dssp             EEECCSHH--HHHHHHHHHHTTCC---CEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred             EEECChHH--HHHHHHHHHHCCCC---eEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEec
Confidence            33455543  44556678888863   2899999888753           23344455556677788888876654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0023  Score=56.23  Aligned_cols=55  Identities=16%  Similarity=0.106  Sum_probs=43.8

Q ss_pred             chhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCC
Q psy8791         265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPM  321 (706)
Q Consensus       265 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~  321 (706)
                      .......+...++..||++++++.+.+|+.++  +.+...++..+++||+||+|+|.
T Consensus       107 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~g--v~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         107 GKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG--LHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             CTTTHHHHHHHHHHTTCEEECSCEEEEEETTE--EEEEETTEEEEECCSEEEECCCE
T ss_pred             chhhhHHHHHHHhhCCeEEEeeeEEEEEcCCC--CEEecCCeEEEEECCEEEECCCC
Confidence            34566777889999999999999999998765  55544444456999999999995

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.96  E-value=6.1e-05  Score=71.68  Aligned_cols=53  Identities=11%  Similarity=0.045  Sum_probs=38.0

Q ss_pred             CchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCEEEEEeCCCceEEeecEEEECCCCCchhhhhc
Q psy8791         264 PSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELAT  329 (706)
Q Consensus       264 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~~~~g~~i~~D~vI~a~G~~~~~~~~~  329 (706)
                      .++.+...+.+.++++|++++.+ +|++++            +.....+|.||.|+|..+.....+
T Consensus       140 d~~~~~~~L~~~~~~~G~~~~~~-~v~~l~------------~~~~~~~d~vVnctG~~a~~l~~d  192 (246)
T d1kifa1         140 EGRKYLQWLTERLTERGVKFFLR-KVESFE------------EVARGGADVIINCTGVWAGVLQPD  192 (246)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEC-CCCCHH------------HHHHTTCSEEEECCGGGHHHHSCC
T ss_pred             cHHHHHHHHHHHHHHCCCEEEEe-EeCCHH------------HhccCCCCEEEECCcccccccCCC
Confidence            35678888999999999998865 343322            123456899999999998765543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.95  E-value=0.00026  Score=71.88  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+|||||+|+||+.+|.+|++.  |++|+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC--cCeEEEEecCCC
Confidence            3799999999999999999998  899999999764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0002  Score=72.16  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ||+|||||++|++||..|+++  +.+|+|+|+++..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~--G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT--TCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCC
Confidence            799999999999999999998  8899999997753

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.89  E-value=0.00037  Score=71.40  Aligned_cols=51  Identities=27%  Similarity=0.420  Sum_probs=39.0

Q ss_pred             cccccccCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          15 LSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++++.+.+..-....+|+||||||.||+.+|.+|++. ++.+|.|||+++.
T Consensus         9 ~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~-~~~~VLlLEaG~~   59 (391)
T d1gpea1           9 VQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY   59 (391)
T ss_dssp             CGGGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred             ccccccCCcccccCCeeeEEEECcCHHHHHHHHHHHHC-CCCeEEEEcCCCC
Confidence            34444443333334469999999999999999999987 3489999999975

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.82  E-value=0.00029  Score=68.92  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             cccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       469 ~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +|+|||||++|+++|..|++.  +.+|+|||+.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            899999999999999999998  899999999763

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.77  E-value=0.00035  Score=71.43  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...+|+||||||.||+..|.+|++. ++++|.|||++++
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCCC
Confidence            3458999999999999999999986 4589999999975

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.004  Score=52.00  Aligned_cols=69  Identities=12%  Similarity=0.123  Sum_probs=54.8

Q ss_pred             EEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCCE---EEEEeCCC---ceEEeecEEEECCC
Q psy8791         252 KLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKE---AVFKSEDK---TERLPYAIMHVTPP  320 (706)
Q Consensus       252 ~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~---v~~~~~~~---g~~i~~D~vI~a~G  320 (706)
                      +|+++++.+.+-..+...+.+++.....+|.++.++.+.++..++..   +++....+   -+++++|-++++.|
T Consensus        52 ~V~li~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          52 EVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             cEEEEeecccccchhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            59999999887667788888888888899999999999999987653   34433222   25699999999987

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.76  E-value=0.00037  Score=70.09  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=36.2

Q ss_pred             ccccccccccCcchhHHHHHHHHHhh---cCCCcEEEECCCCCCcCCc
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSR---LGKGQVSIVEPTDDHYYQP  508 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~---~~~~~i~vid~~~~~~~~~  508 (706)
                      +...|||+|||||++|+++|..|++.   ..+.+|+|+|+++.+.+.+
T Consensus         4 ~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~   51 (360)
T d1pn0a1           4 SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG   51 (360)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCC
Confidence            44579999999999999999999752   2378999999987665433

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.0004  Score=68.69  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||+||++||..|+++.++.+|+|+|+++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            46999999999999999999987678999999997764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.71  E-value=0.00036  Score=68.84  Aligned_cols=36  Identities=31%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||||||+|.+|+++|..|+++  +.+|+|||+.+..
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~~~   51 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPVI   51 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            58999999999999999999998  8999999997653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.70  E-value=0.00036  Score=69.75  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=31.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      -+||||||+|+||++||..+++.  +.+|+|||+.+.
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~--G~~V~liEK~~~   39 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQK--GLSTIVLSLIPV   39 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCG
T ss_pred             ecCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCC
Confidence            47999999999999999999988  889999999653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.70  E-value=0.00036  Score=67.85  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      .+||+|||||+||++||..|+++ .+.+|+|+|+++..
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSP   69 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCC
Confidence            46999999999999999999752 37999999997754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=96.68  E-value=0.00055  Score=69.24  Aligned_cols=35  Identities=20%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+||||||.||+.+|.+|++.  +.+|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC--CCeEEEEEccCC
Confidence            58999999999999999999998  889999999864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0037  Score=52.22  Aligned_cols=89  Identities=15%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccc-cCCCcEEEE-ceeEE
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV-LPSGATWVK-DKIVS  107 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~-~~v~~  107 (706)
                      .++|+|||||.+++-.|..|.+.  .-+|++|-|.+.+...+..             ...+.+. ...++.+.. .++.+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~--a~~V~li~r~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~v~~   91 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRDGFRAEKIL-------------IKRLMDKVENGNIILHTNRTLEE   91 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT--SSEEEEECSSSSCCCCHHH-------------HHHHHHHHHTSSEEEECSCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc--CCcEEEEeecccccchhHH-------------HHHHHHhhcccceeEecceEEEE
Confidence            57999999999999999999998  7789999998854322111             0001111 123455443 46666


Q ss_pred             EEcCCC---EEEeCCC------eEEEecEEEEccc
Q psy8791         108 FDPENN---RVRTQAG------SEISYEYMIVASG  133 (706)
Q Consensus       108 id~~~~---~v~~~~g------~~~~yd~lviAtG  133 (706)
                      |..++.   .|.+.+.      ++++.|.|+++.|
T Consensus        92 i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          92 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            666543   2344331      4688999999987

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.59  E-value=0.00054  Score=68.99  Aligned_cols=36  Identities=33%  Similarity=0.609  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...+|+||||||.||+.+|.+|++.   ++|+|||+.+.
T Consensus        24 ~~~YD~IIVGsG~aG~vlA~rLae~---~kVLvLEaG~~   59 (351)
T d1ju2a1          24 EGSYDYVIVGGGTSGCPLAATLSEK---YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTTT---SCEEEECSSBC
T ss_pred             cCCccEEEECccHHHHHHHHHhcCC---CCEEEEecCCC
Confidence            3458999999999999999999875   79999999975

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0031  Score=52.71  Aligned_cols=87  Identities=14%  Similarity=0.272  Sum_probs=60.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEE-ceeE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVK-DKIV  106 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~-~~v~  106 (706)
                      ..++|+|||||.+.+-.|..|.+.  .-+|+||-+.+.+.-.+.                ..+++.. .+++++. .+++
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~--a~~V~li~r~~~~~~~~~----------------~~~~~~~~~~I~v~~~~~v~   90 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGI--VEHVTLLEFAPEMKADQV----------------LQDKLRSLKNVDIILNAQTT   90 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTT--BSEEEEECSSSSCCSCHH----------------HHHHHHTCTTEEEESSEEEE
T ss_pred             CCceEEEEeCCHHHHHHHHhhhcc--CCceEEEecccccccccc----------------cccccccccceeEEcCcceE
Confidence            357999999999999999999998  678999999875321111                0112222 4677774 5677


Q ss_pred             EEEcCCCE---EEeC---CC--eEEEecEEEEccc
Q psy8791         107 SFDPENNR---VRTQ---AG--SEISYEYMIVASG  133 (706)
Q Consensus       107 ~id~~~~~---v~~~---~g--~~~~yd~lviAtG  133 (706)
                      +|..+...   +.+.   +|  ++++.|.|+++.|
T Consensus        91 ~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          91 EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             EEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            77765332   3332   23  4688999999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00057  Score=68.19  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=32.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.+||+|||+|.||++||.++.++  +.+|+|+|+.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~--G~~V~lleK~~~   41 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVFP   41 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHT--TCCCEEECSSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHc--CCeEEEEeCCCC
Confidence            468999999999999999999988  789999999654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.49  E-value=0.00085  Score=60.10  Aligned_cols=35  Identities=17%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .++|+|||+|..|..+|.+|.+.  |++|+|+|++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChH
Confidence            47899999999999999999999  899999999873

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0014  Score=51.64  Aligned_cols=36  Identities=14%  Similarity=0.260  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|+|.|-+|+++|..|.++  +.+|+++|.++.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcC
Confidence            357899999999999999999999  999999998763

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.38  E-value=0.00084  Score=67.93  Aligned_cols=36  Identities=19%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..||+||||+|+||+.+|.+|.+.  +.+|+|+|+...
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~--G~kVlvLEaG~~   38 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGA--GYKVAMFDIGEI   38 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhC--CCeEEEEecCCC
Confidence            468999999999999999999996  899999998643

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.37  E-value=0.0009  Score=66.25  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      ..+||||||+|.||++||..+++.  +.+|+|||+.+..
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~~~   54 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFS   54 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            357999999999999999999998  8999999997643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.33  E-value=0.00086  Score=66.52  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..||||||+|.||+++|..|++.  +.+|+|||+.+.
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~~   57 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPI   57 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTT--TCCEEEECSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            46999999999999999999988  899999999765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.00089  Score=66.10  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .+||||||+|.||++||.++++..++.+|+|+|+.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            479999999999999999999987778999999865

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.27  E-value=0.0071  Score=48.78  Aligned_cols=31  Identities=16%  Similarity=0.127  Sum_probs=24.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEEC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE  499 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid  499 (706)
                      -++|+|||+|.+|+-.|..|.+.  ..+++++.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~--ak~v~~~~   62 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPV--AKHPIYQS   62 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT--SCSSEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHHh--cCEEEEEE
Confidence            46899999999999999999876  34555553

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.001  Score=65.34  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .+||||||+|+||++||.++++.  . +|+|||+.+.
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~--g-~V~llEK~~~   40 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQ--H-QVIVLSKGPV   40 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTT--S-CEEEECSSCT
T ss_pred             cCCEEEECccHHHHHHHHHhhcC--C-CEEEEECCCC
Confidence            58999999999999999998765  4 8999999764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.01  E-value=0.0017  Score=65.20  Aligned_cols=37  Identities=30%  Similarity=0.465  Sum_probs=31.3

Q ss_pred             cccccccCcchhHHHHHHHHHhh--cCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSR--LGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~--~~~~~i~vid~~~~  503 (706)
                      -+||||||+|+||++||.++++.  .++.+|+|||+.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            36999999999999999999763  34789999999654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.94  E-value=0.0027  Score=56.94  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|.|||+|..|++.|..|++.  |++|+++++++.
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHH
Confidence            36899999999999999999999  999999999863

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.90  E-value=0.0055  Score=53.02  Aligned_cols=33  Identities=18%  Similarity=0.088  Sum_probs=27.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCC-CcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGK-GQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~-~~i~vid~~~  502 (706)
                      .+|||||||..|+-+|..+.+.  + .+|+++.+.+
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~--GA~~V~vi~rr~   79 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRC--GARRVFLVFRKG   79 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT--TCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHc--CCcceeEEEeCC
Confidence            4799999999999999998887  4 4588886543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.77  E-value=0.016  Score=53.75  Aligned_cols=36  Identities=14%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|||+|-.|+-+|..|++.  +.+++++-+.+.
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~--~~~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhh--hccccccccccc
Confidence            468999999999999999999998  677777765543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.72  E-value=0.019  Score=47.91  Aligned_cols=86  Identities=17%  Similarity=0.251  Sum_probs=57.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCcccccccccccC-CCcEEEE-ceeE
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLP-SGATWVK-DKIV  106 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~-~~v~  106 (706)
                      ..++|+|||||-+.+-.|..|++.  --+|+||-|.+.+.-.+.+                ..++.. .+++++. .++.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~--a~~V~li~r~~~~ra~~~~----------------~~~l~~~~nI~v~~~~~v~   94 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDAFRASKIM----------------QQRALSNPKIDVIWNSSVV   94 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTT--SSEEEEECSSSSCCSCHHH----------------HHHHHTCTTEEEECSEEEE
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCC--CCcEEEEEeccccccchhh----------------hhccccCCceEEEeccEEE
Confidence            357999999999999999999998  6789999999864321111                112222 4566654 5666


Q ss_pred             EEEcCCC-----EEEeC---CC--eEEEecEEEEcc
Q psy8791         107 SFDPENN-----RVRTQ---AG--SEISYEYMIVAS  132 (706)
Q Consensus       107 ~id~~~~-----~v~~~---~g--~~~~yd~lviAt  132 (706)
                      .|.-+.+     .+.+.   ++  .++..|.|+||.
T Consensus        95 ~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          95 EAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            6665432     23322   22  578899998873

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.68  E-value=0.004  Score=52.47  Aligned_cols=34  Identities=18%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|+|+|+|.-|...|..|.+.  |++|++||+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChh
Confidence            5899999999999999999998  899999999873

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.63  E-value=0.0055  Score=53.90  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .-+|+|||||.+|+.||..+.+.  |.+|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHH
Confidence            35899999999999999999999  999999999874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=95.60  E-value=0.0032  Score=63.53  Aligned_cols=35  Identities=26%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      ..++|+||||+|++|+.+|.+|.+.  +.+|+|+|+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaea--G~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            3578999999999999999999987  8999999975

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.58  E-value=0.0064  Score=52.71  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..-+|+|||+|.+|+.|+..+.+.  |.+|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcH
Confidence            346899999999999999999999  99999999886

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0062  Score=53.44  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||+|||+|.-|...|..|++.  |++|+++++++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHH
Confidence            6899999999999999999999  999999999874

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.36  E-value=0.004  Score=62.59  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .||+||||+|+||+.+|.+|.+.  +.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC--CCeEEEEEccC
Confidence            48999999999999999999986  68999999863

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=95.34  E-value=0.0038  Score=63.52  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.||+||||+|+||+.+|.+|.+. ++.+|+|||..+.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~-~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHC-CCCeEEEEcCCCC
Confidence            469999999999999999999875 5589999998753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=95.25  E-value=0.004  Score=63.23  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +.||+||||+|+||+.+|.+|.+. ++.+|+|||..+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCC
Confidence            459999999999999999999874 468999999874

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.043  Score=45.38  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=46.4

Q ss_pred             EEEEEeCCCcCCCchhHHHHHHHHHHh-CCceEEcCCceEEEeCCCCE---EEEEeCC--CceEEeecEEEECCCC
Q psy8791         252 KLTYCTGMGVLFPSPFYAEKIHDILIG-RGVDVHKGKALVEIDLANKE---AVFKSED--KTERLPYAIMHVTPPM  321 (706)
Q Consensus       252 ~v~l~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~---v~~~~~~--~g~~i~~D~vI~a~G~  321 (706)
                      +|+++++.+.+-..+.    +.+.+++ .+|++++++.+.++..++..   +.+....  +.+++++|-++++.|.
T Consensus        55 ~V~li~r~~~~~~~~~----~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          55 HVTLLEFAPEMKADQV----LQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EEEEECSSSSCCSCHH----HHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             ceEEEecccccccccc----cccccccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            5999999887654333    3334444 57999999999999986543   3444332  3357999999999883

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0068  Score=52.29  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|||||..|+.-|..|.+.  |.+||||++..
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~~   46 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDL   46 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCC
Confidence            467999999999999999999999  99999997653

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.03  E-value=0.0048  Score=62.00  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=29.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT  501 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~  501 (706)
                      .||||||+|+||+.+|.+|.+.  +.+|+|+|+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea--G~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC--cCeEEEEecC
Confidence            4899999999999999999987  8999999985

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.92  E-value=0.0018  Score=60.89  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=26.4

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCC----CcEEEECCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGK----GQVSIVEPT  501 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~----~~i~vid~~  501 (706)
                      ++|+|||||.+|+++|..|+++..+    .+++++++.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            3699999999999999999998433    245666543

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=94.89  E-value=0.0052  Score=61.45  Aligned_cols=37  Identities=27%  Similarity=0.601  Sum_probs=31.4

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .....||+||||+|+||+.+|.+|.+.   .+|+|||+.+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae~---~kVLvLEaG~   58 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSEK---YKVLVLERGS   58 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTTT---SCEEEECSSB
T ss_pred             cccCCccEEEECccHHHHHHHHHhcCC---CCEEEEecCC
Confidence            344568999999999999999999763   7899999875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.02  Score=46.30  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCC-----------HHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGG-----------AAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG-----------~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++.++|+|||+|           +++..|+..|++.  |+++++|..|+.
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~--g~~~IliN~NPe   49 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED--GYETIMVNCNPE   49 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT--TCEEEEECCCTT
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhc--CCeEEEEecChh
Confidence            456899999998           7999999999999  999999999985

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.80  E-value=0.017  Score=49.29  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++||.|||+|..|.++|+.|..+.-..++.|+|.++.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            346799999999999999999999832358999998763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.80  E-value=0.0088  Score=50.34  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++++|+|+|..|...|..|.+.  |++|++||+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHH
Confidence            5799999999999999999999  999999999873

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.78  E-value=0.01  Score=54.08  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      |+|.|||.|+.|+..|..|++.  |++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHH
Confidence            5799999999999999999998  999999998763

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.77  E-value=0.015  Score=47.28  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|||||..|..-|..|.+.  |.+|+++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEA--GARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence            357999999999999999999999  89999998866

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.012  Score=45.87  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=31.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      -++|+|+|.|-+|+++|+.|.+.  +.+|+++|.++.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcC
Confidence            34799999999999999999998  899999998654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.016  Score=52.03  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      -++|.|||+|.-|.+-|..+++.  |++|+++|+++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChH
Confidence            36899999999999999999998  999999999874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.12  E-value=0.017  Score=51.66  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +-++|.|||+|..|.+-|..+++.  |++|+++|+++.
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~   38 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEH   38 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence            457899999999999999999998  999999999864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.05  Score=44.44  Aligned_cols=37  Identities=16%  Similarity=0.277  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCC-----------HHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGG-----------AAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG-----------~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++.++|+|||+|           +++..|+..|++.  |+++++|..|+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~--g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREE--GYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH--TCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc--CCeEEEecCchH
Confidence            456899999998           5899999999999  999999999986

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.66  E-value=0.047  Score=46.90  Aligned_cols=39  Identities=15%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        27 ~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ...++||.|||+|..|.++|+.|.... =.+++|+|.++.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~-~~el~L~D~~~~   42 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRE-LADVVLYDVVKG   42 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCC-CceEEEEEeccc
Confidence            345689999999999999998888772 248999998874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.62  E-value=0.015  Score=51.31  Aligned_cols=33  Identities=15%  Similarity=0.057  Sum_probs=30.1

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++|+|||||..|..+|..|.+.  +.+|+|+|++.
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCh
Confidence            5799999999999999999988  78999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.56  E-value=0.016  Score=48.65  Aligned_cols=34  Identities=15%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      |+|+|+|+|.-|...|+.|.+.  +.+|++||+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChh
Confidence            4799999999999999999987  889999998664

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.51  E-value=0.026  Score=48.08  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             ccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         464 FRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       464 ~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      |.+++||.|||+|.-|.++|..|....--.++.++|.++
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            445679999999999999999999873336899999754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.47  E-value=0.042  Score=46.89  Aligned_cols=39  Identities=13%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        28 ~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +...||.|||+|..|.++|+.|....-..++.|+|.++.
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            445799999999999999999998833348999998763

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.24  E-value=0.02  Score=51.34  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             cccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         463 VFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       463 ~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .++.|.+|.|||+|.-|.+.|..|.+.  +.+|++.++++
T Consensus         3 ~~~~m~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~~   40 (189)
T d1n1ea2           3 ELLYLNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNE   40 (189)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHHTT--EEEEEEECSCH
T ss_pred             ccceeceEEEECCCHHHHHHHHHHHHc--CCeEEEEEecH
Confidence            356788999999999999999999887  67999998754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.12  E-value=0.023  Score=50.81  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+++|.|||+|.-|.+.|..|++.  +++|+|.++++.
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~~~   41 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEE   41 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT--EEEEEEECSCHH
T ss_pred             eeceEEEECCCHHHHHHHHHHHHc--CCeEEEEEecHH
Confidence            346899999999999999999998  889999998763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.05  E-value=0.045  Score=47.60  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|.|||.|.-|.+.|..|++.  +++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCc
Confidence            5799999999999999999998  89999999986

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.01  E-value=0.057  Score=46.20  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVG-GGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIG-gG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|.||| .|.-|.+.|..|++.  |++|+++|+++.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHc--CCCcEecccccc
Confidence            457999999 599999999999999  999999999763

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.66  E-value=0.044  Score=47.06  Aligned_cols=41  Identities=15%  Similarity=0.255  Sum_probs=32.2

Q ss_pred             CcccccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         462 GVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       462 ~~~~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +.+++++||.|||+|.-|.++|..+.... -.+++++|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~-~~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRE-LADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCC-CceEEEEEeccc
Confidence            34556789999999999999998887762 258999997654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.64  E-value=0.1  Score=44.81  Aligned_cols=40  Identities=23%  Similarity=0.319  Sum_probs=32.8

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        26 ~~~~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ....++||.|||+|..|-++|+.|..+.---++.|+|.++
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3344679999999999999999999883224899999985

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.58  E-value=0.067  Score=45.36  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +||.|||+|..|.++|+.|..+.--.++.|+|.++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999998873235899999876

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.40  E-value=0.041  Score=48.15  Aligned_cols=35  Identities=20%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .-+|+|||+|-+|+.|++.+++.  +.+|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHH
Confidence            35899999999999999999998  899999998654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.39  E-value=0.38  Score=39.50  Aligned_cols=65  Identities=14%  Similarity=0.037  Sum_probs=45.1

Q ss_pred             EEEEEeCCCcCCCchhHHHHHHHHHHhCCceEEcCCceEEEeCCCC-----EEEEEeC--CCceEEeecEEEECC
Q psy8791         252 KLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANK-----EAVFKSE--DKTERLPYAIMHVTP  319 (706)
Q Consensus       252 ~v~l~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-----~v~~~~~--~~g~~i~~D~vI~a~  319 (706)
                      +|+++++.+.+-..+..   +++.++..+|++++++.+.++..++.     .+.+...  ++.+++++|-+++++
T Consensus        59 ~V~li~r~~~~ra~~~~---~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          59 KVYIIHRRDAFRASKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEECSSSSCCSCHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             cEEEEEeccccccchhh---hhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            59999999887543332   24444557899999999999987642     2334333  245689999998864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.36  E-value=0.063  Score=47.46  Aligned_cols=32  Identities=19%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT   64 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~   64 (706)
                      ++|.|||+|.-|.+.|..|++.  +++|++..+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEec
Confidence            5899999999999999999998  8999999764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.32  E-value=0.076  Score=44.81  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +++|.|||+|..|.++|+.|.... -.++.++|.++.
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~~   36 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVEG   36 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-cceEEEEeeccc
Confidence            358999999999999999998872 248999998774

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.16  E-value=0.055  Score=46.62  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.6

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +.-+++|||+|-+|+.++..+++.  +.+|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcH
Confidence            456899999999999999999998  89999999854

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.15  E-value=0.049  Score=48.90  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      |+|.|||.|+.||.+|..++ +  +++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~--g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-L--QNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T--TSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHH-C--CCcEEEEECCHH
Confidence            57999999999999998775 4  799999998864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.05  E-value=0.087  Score=44.40  Aligned_cols=36  Identities=17%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||.|||+|..|.++|+.|..+.-..++.|+|.++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            589999999999999999988733348999998774

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=91.58  E-value=0.1  Score=43.95  Aligned_cols=36  Identities=19%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||.|||+|..|.++|..|.....-.++.|+|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            479999999999999999988733359999998874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.061  Score=46.61  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=31.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |||+|||+|.-|...|..|.+.  +.+|+++++++..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHH
Confidence            4799999999999999999987  8999999987653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=91.36  E-value=0.046  Score=48.33  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++|.|||+|..|..+|..|.+.  +.+|+++|+++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCH
Confidence            4799999999999999999998  89999999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.13  Score=44.82  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|+|+|-++-++++.|.+.  +.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSL--DCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhccc--ceEEEeccchH
Confidence            357899999999999999999998  78999999886

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.95  E-value=0.17  Score=43.26  Aligned_cols=37  Identities=27%  Similarity=0.410  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .+.+|.|||+|..|.++|+.|....-..++.|+|.++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3458999999999999999999883335899999876

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.16  Score=37.45  Aligned_cols=34  Identities=18%  Similarity=0.085  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++|.|+|||.=|-..+...++.  |+++.++|+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGG--TEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCCCC
Confidence            6899999999999999999999  999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.85  E-value=0.048  Score=45.50  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ++++|+|+|.-|..+|..|.+.  +.+|++||.++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHH
Confidence            3689999999999999999998  899999998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.46  E-value=0.13  Score=43.33  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||.|||+|..|.++|+.|..+..-.++.|+|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            589999999999999999988732248999998763

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=90.40  E-value=0.13  Score=43.28  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .||.|||+|..|.++|+.|..+.--.++.|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            47999999999999999998873335899999876

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.20  E-value=0.17  Score=43.90  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  |.+|+++|+++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhc--cccccccccchh
Confidence            45799999999999988877777  899999999874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.25  Score=39.35  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|.|||||.=|...|...++.  |+++.++|+++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCCC
Confidence            345899999999999999999998  999999999875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.02  E-value=0.11  Score=46.09  Aligned_cols=34  Identities=12%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             CcEEEE-CCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVV-GGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvII-GgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||.|| |+|--|.+.|..|++.  |++|++.+|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~--G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCHH
Confidence            579999 5699999999999999  999999999863

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.92  E-value=0.15  Score=42.79  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +||.|||+|..|.++|..|..+.-..++.|+|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            58999999999999999998873335899999876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.86  E-value=0.17  Score=43.82  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|.|||.|.-|-+.|..|++.....+|+.+|+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            57999999999999999999984446899999986

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.73  E-value=0.099  Score=42.06  Aligned_cols=34  Identities=18%  Similarity=0.111  Sum_probs=30.2

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .++|+|||+|..|..-|+.|.+.  +.+|+++++..
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA--GARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence            45899999999999999999998  89999998644

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.16  Score=44.09  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      ..+|+|+|+|+.|+.++..++..  |. +|+++|+++.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSAT   62 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHH
T ss_pred             CCEEEEECCCccHHHHHHHHHHc--CCceEEeccCCHH
Confidence            34799999999999999888877  66 7999998874

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.68  E-value=0.29  Score=40.92  Aligned_cols=78  Identities=17%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             HHHHHHhhcCCCeEEEEcCCCCcccCcccccccCccccCccccccccccc-CCCcEEEEc---eeEEEEcCCCEEEeCCC
Q psy8791          45 MAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKD---KIVSFDPENNRVRTQAG  120 (706)
Q Consensus        45 aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~---~v~~id~~~~~v~~~~g  120 (706)
                      ++.+|+++....+|.|+...+...-.+.+.         ..+...+..++ ..+|++...   .+.++|...+++.+.+|
T Consensus        58 ~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~G  128 (141)
T d1fcda2          58 VAYYLKAHKPMSKVIILDSSQTFSKQSQFS---------KGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFG  128 (141)
T ss_dssp             HHHHHGGGCSCCCEEEECSCSSCTTHHHHH---------HHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTC
T ss_pred             HHHHHHHcCCCCcEEEEecCCCCccCCccc---------HHHHHHHHHHHHhcCceeeecCCceEEeecCCcEEEEeCCC
Confidence            345566665556788887776421111100         00111133333 367888763   58899999999999999


Q ss_pred             eEEEecEEEEc
Q psy8791         121 SEISYEYMIVA  131 (706)
Q Consensus       121 ~~~~yd~lviA  131 (706)
                      +++.||.|.+-
T Consensus       129 e~v~yD~l~vv  139 (141)
T d1fcda2         129 DEFKADVINLI  139 (141)
T ss_dssp             CEEECSEEEEC
T ss_pred             cEEeeeEEEeC
Confidence            99999999873

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.34  E-value=0.14  Score=43.51  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=33.0

Q ss_pred             ccccccccccC-cchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         464 FRQMFHLGVVG-GGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       464 ~~~~~~ivIIG-aG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ...|++|.||| .|.-|.+.|+.|++.  +++|+++|.+..
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~~   44 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDW   44 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCG
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHc--CCCcEecccccc
Confidence            34578999999 799999999999988  899999998653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.29  E-value=0.12  Score=45.02  Aligned_cols=36  Identities=25%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      |++|.|||.|.-|.+.|+.|++.....+|..+|+++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            567999999999999999999885556899999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.26  E-value=0.17  Score=43.91  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  |.+|+++|+++.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~   61 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPR   61 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred             CCEEEEEcccccchhhHhhHhhh--cccccccchHHH
Confidence            45799999999999998877766  889999999874

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.02  E-value=0.08  Score=45.13  Aligned_cols=32  Identities=22%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEP  500 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~  500 (706)
                      .++++|||||..|+.-|+.|.+.  +.+|+||++
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeC
Confidence            35799999999999999999998  899999975

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.86  E-value=0.21  Score=43.13  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  |.+|+++|+++.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~   62 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDA   62 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred             CCEEEEeeccccHHHHHHHHHHc--CCccceecchhh
Confidence            45799999999999988777666  799999998863

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.76  E-value=0.11  Score=46.62  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      |+|.|||.|+-|+.+|..+++.  +.+|+.+|.++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCH
Confidence            4699999999999999999988  88999999864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.21  Score=44.76  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .+++|+|+|| |+.|-..+.+|.++  |++|+++.|++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcCh
Confidence            3578999996 99999999999998  89999999876

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.71  E-value=0.13  Score=43.64  Aligned_cols=37  Identities=14%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ...||.|||+|.-|.++|..|....--.++.++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            3458999999999999999998873335899999754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=88.66  E-value=0.21  Score=43.27  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~   65 (706)
                      +++|+|+|+|-++-++++.|.+.  +. +|+|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~--g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEecccH
Confidence            56899999999999999999998  64 799999876

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=0.25  Score=41.91  Aligned_cols=33  Identities=9%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      -+|||+|.|--|...+..|.+.  +.+|++||.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCEEEEeccc
Confidence            3799999999999999999998  89999999886

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.23  E-value=0.31  Score=41.15  Aligned_cols=36  Identities=28%  Similarity=0.437  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +.||.|||+|..|-++|..|....- .++.|+|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCC
Confidence            4689999999999999988777632 48999998774

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.20  E-value=0.81  Score=41.16  Aligned_cols=37  Identities=22%  Similarity=0.333  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-------------------hcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTS-------------------KLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~-------------------~~~~~~Vtlie~~~~   66 (706)
                      .++|||||||-.+|=||..|.+                   +..--+|+++.|...
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            4799999999999999998873                   122347999998764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.59  E-value=0.25  Score=41.59  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +||.|||| |..|.++|+.|..+.--.++.|+|.++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            57999996 999999999998872224899999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.21  E-value=0.23  Score=47.32  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      .+.||+|+|| |+.|...+.+|.++  |++|+++.|++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCc
Confidence            4578999998 99999999999998  899999998763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.12  E-value=0.23  Score=42.49  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++.||.|||+|.-|.++|..|....--.++.++|.++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3458999999999999999998873335899999754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.10  E-value=0.24  Score=39.66  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             cccccccCcc-----------hhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGG-----------AAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG-----------~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .++|+|||+|           +++..|++.|++.  +.++++|..||.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~--g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALRED--GYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT--TCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhc--CCeEEEEecChh
Confidence            4589999998           5789999999998  899999988764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=87.04  E-value=0.43  Score=40.76  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~   65 (706)
                      ..++|+|||+|-.|-.+|..|..+  +. +++++.|+.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCcH
Confidence            567999999999999999999998  66 699999875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=0.16  Score=45.61  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             cccccccccCc-chhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         465 RQMFHLGVVGG-GAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       465 ~~~~~ivIIGa-G~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      |.|++|+|+|| |+-|-+++.+|.+.  +++|+++.+++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcCh
Confidence            56889999995 89999999999988  79999998754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.93  E-value=0.26  Score=42.36  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      +++|-|||-|..|...|.+|.+.  +++|+++|+++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~~   34 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQ   34 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHC--CCeEEEEECch
Confidence            35799999999999999999998  99999999886

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.88  E-value=0.21  Score=42.91  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|-|||-|..|...|..|.+.  |++|+++|+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCc
Confidence            4799999999999999999998  99999999986

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.50  E-value=0.24  Score=41.48  Aligned_cols=36  Identities=14%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      +||.|||+|.-|.++|..+....--.++.++|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            379999999999999999988733368999997654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.49  E-value=0.17  Score=44.76  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             cccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       465 ~~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ++..+|.|||+|.-|...|..+.+.  +.+|+++|.++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~   37 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINE   37 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence            3466899999999999999888887  89999999865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=86.37  E-value=0.24  Score=43.42  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  |. +|+++|+++.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHH
T ss_pred             CCEEEEECCCccchhheeccccc--ccccccccccccc
Confidence            35799999999999998888777  76 7999999874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=86.15  E-value=0.22  Score=42.88  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      |+|.|||+|.-|.+.|+.|++.  +.+|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCc
Confidence            3699999999999999999887  88999999854

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.00  E-value=0.38  Score=47.26  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=31.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++++|+|.|| |+-|-..+.+|.++  +++|+++|+..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHE--GHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCC
Confidence            5678999997 99999999999998  89999998765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.91  E-value=0.2  Score=44.50  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=30.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .++|.|||+|.-|...|..+++.  +++|+++|.++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChH
Confidence            46899999999999999999887  899999998653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=85.86  E-value=0.26  Score=41.54  Aligned_cols=35  Identities=14%  Similarity=0.354  Sum_probs=29.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +||.|||+|.-|.++|..|..+.--.++.++|.++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            47999999999999999998873335899999743

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.82  E-value=0.27  Score=36.22  Aligned_cols=36  Identities=19%  Similarity=0.097  Sum_probs=31.9

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH  504 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~~  504 (706)
                      |++|.|||+|--|...+...++.  +.++.++|+++..
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~~~~   36 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLDAEP   36 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGG--TEEEEEECTTSCG
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCCCCC
Confidence            56899999999999999999998  8999999986653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=85.60  E-value=0.3  Score=46.20  Aligned_cols=35  Identities=14%  Similarity=0.225  Sum_probs=32.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ++||+|+|| |+-|-..+..|.+.  |++|++++|++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCCc
Confidence            679999998 99999999999998  899999999864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=85.53  E-value=0.31  Score=42.32  Aligned_cols=35  Identities=14%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|+|+|-++-++++.|.+.  +.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~--~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQA--QQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc--CceeeeccchH
Confidence            457899999999999999999876  67999999986

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.47  E-value=0.33  Score=40.72  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          32 KLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        32 ~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ||+|||| |..|.++|+.|..+.---++.|+|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 999999999998872224799999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.39  E-value=0.38  Score=41.77  Aligned_cols=35  Identities=20%  Similarity=0.164  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  |. +|+++|+++.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~--Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLR--GAGRIIGVGSRPI   63 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT--TCSCEEEECCCHH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcc--cccccccccchhh
Confidence            45799999999999999888876  65 7999998864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.37  E-value=0.38  Score=40.70  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +||-|||.|..|.+.|..|++.  +++|+++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~--g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC--CCeEEEEcCchh
Confidence            5799999999999999999998  899999987763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=0.46  Score=40.91  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  |+++++++.++.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~   65 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEA   65 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGG
T ss_pred             CCEEEEeccchHHHHHHHHhhcc--cccchhhccchh
Confidence            45799999999999988777766  889999988763

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=84.92  E-value=0.43  Score=41.46  Aligned_cols=35  Identities=11%  Similarity=0.143  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      +.+|-|||-|..|...|..|.+.  |++|+++|+++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHH
Confidence            45799999999999999999998  999999999873

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=84.91  E-value=0.38  Score=41.05  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=30.3

Q ss_pred             cccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       467 ~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      ..||.|||+|.-|.++|..|....--.++.++|.++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            469999999999999999999873335899999754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.89  E-value=0.48  Score=41.42  Aligned_cols=37  Identities=14%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..++|+|+|+|-+|-+++..|.+.. ..++++++|++.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcC-CceEeeeccchH
Confidence            3479999999999999999999982 248999999863

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.70  E-value=0.31  Score=40.74  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=28.9

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +||.|||+|.-|.++|..+....--.++.++|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            47999999999999999998773235899999754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=84.45  E-value=0.34  Score=40.53  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .||.|||+|.-|.++|..+....--.++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            379999999999999999988733358999997553

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.43  E-value=0.29  Score=42.87  Aligned_cols=31  Identities=19%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEP  500 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~  500 (706)
                      |+|.|||+|..|.+.|..|.+.  +.+|++..+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH--CCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEe
Confidence            4799999999999999999987  789999865

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.99  E-value=0.29  Score=41.00  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=29.0

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      .||.|||+|.-|.++|..+..+.--.++.++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            47999999999999999998773335899999643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.99  E-value=0.66  Score=38.78  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=28.1

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHhhc-CCCeEEEEcCCC
Q psy8791          31 CKLLVVG-GGAAGCSMAAKFTSKL-GKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIG-gG~aGl~aA~~L~~~~-~~~~Vtlie~~~   65 (706)
                      +||.||| +|..|-++|+.|..+. -..++.|+|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            5899999 5999999999886542 246899999754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.46  E-value=0.52  Score=40.95  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|-|||-|.-|...|.+|.+.  +++|.++|+++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECCH
Confidence            5799999999999999999998  99999999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=82.81  E-value=0.69  Score=40.05  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCC-eEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~Vtlie~~~~   66 (706)
                      ..+|+|+|+|.-|+.++..++..  |. .|++.|.++.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGE   64 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHHh--CCceeeeeccchH
Confidence            35799999999999999888877  65 6888898874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.48  E-value=0.58  Score=40.66  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|+|+|-++-++++.|.+.  + +|+|+.|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~--~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKD--N-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc--c-ceeeehhhh
Confidence            457899999999999999999775  4 899999975

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.48  E-value=0.4  Score=43.48  Aligned_cols=49  Identities=4%  Similarity=0.016  Sum_probs=33.0

Q ss_pred             cCccCCCCchhhhcccccccccccC-ccchhhhccCccEEEE-----cHHHHHHHHHHHh
Q psy8791         635 MYYDRVKGGTTSLEDRGKMRGVSDG-FSTVTWEQKHKQYQLV-----SPEIRAKAYDLTK  688 (706)
Q Consensus       635 ~~~p~i~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~vvVi-----G~E~A~~l~~~~~  688 (706)
                      |++|.+||.+.+.+.+     ++++ +........+|+|+||     |+++|.+++..+.
T Consensus         2 P~iP~~pG~e~F~G~v-----~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~   56 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNL-----YHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAA   56 (235)
T ss_dssp             CCCCCCTTGGGCCSEE-----EEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBS
T ss_pred             CCCCCCCChhhCCCcE-----EecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhc
Confidence            7899999998765532     2232 2222234578999999     7888888766554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.45  E-value=0.71  Score=40.05  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~~   66 (706)
                      ...|+|+|+|..|+.++..++..  + .+|+++|.++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHc--CCceEEEecCcHH
Confidence            44799999999999999999877  6 58999999874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.22  E-value=0.51  Score=40.45  Aligned_cols=35  Identities=17%  Similarity=0.098  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  +.+|++++.++.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~   62 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDE   62 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred             CCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHH
Confidence            45899999999999988777776  889999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=0.57  Score=37.17  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=32.0

Q ss_pred             ccccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ...+|.|||||--|...|..+++.  +.++.++|+++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCCC
Confidence            345899999999999999999998  899999998765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.08  E-value=0.46  Score=39.54  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=28.7

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD  502 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~  502 (706)
                      +||.|||+|.-|.++|..+..+.--.++.++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            47999999999999999988773335899999654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=81.92  E-value=0.48  Score=39.54  Aligned_cols=35  Identities=14%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             ccccccCcchhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       468 ~~ivIIGaG~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      .||.|||+|.-|.++|..|.... -.++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-cceEEEEeeccc
Confidence            37999999999999999998762 258999997553

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=81.73  E-value=0.64  Score=39.19  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++|.+||+|.-|-+.|..|.+.. +++|.+++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCCh
Confidence            57999999999999999998872 48999999987

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.65  E-value=0.67  Score=39.38  Aligned_cols=35  Identities=23%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      .-++|+|+|=|.-|-.+|..|+..  +.+|++.|..|
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGF--GARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhC--CCeeEeeeccc
Confidence            457899999999999999999999  99999999987

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.63  E-value=0.67  Score=41.00  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|+.|+.++..++.. ....|+++|.++.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~   61 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPA   61 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhh-cccceeeecccch
Confidence            45899999999999998887766 2348999998763

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=81.47  E-value=0.71  Score=44.88  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ++++|+|+|| |+-|-+.+..|.++  |++|+++.|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~--G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhC--CCeEEEEECCc
Confidence            5789999997 99999999999998  89999998875

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.34  E-value=0.65  Score=37.56  Aligned_cols=36  Identities=14%  Similarity=0.223  Sum_probs=30.6

Q ss_pred             ccccccccCcc-----------hhHHHHHHHHHhhcCCCcEEEECCCCC
Q psy8791         466 QMFHLGVVGGG-----------AAGCSMAAKFTSRLGKGQVSIVEPTDD  503 (706)
Q Consensus       466 ~~~~ivIIGaG-----------~aG~~~a~~l~~~~~~~~i~vid~~~~  503 (706)
                      ..++|+|||+|           +++..+++.|++.  +.++++|+.|+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~--g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREE--GYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH--TCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc--CCeEEEecCchH
Confidence            34689999997           4689999999998  899999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.53  E-value=0.52  Score=44.04  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          31 CKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        31 ~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      |+|+|.|| |+.|-..+.+|.++  |++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGK--NVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCEEEEeechh
Confidence            67999998 99999999999988  89999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.17  E-value=0.9  Score=39.87  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhcCCCeEEEEcCCC
Q psy8791          29 HSCKLLVVGG-GAAGCSMAAKFTSKLGKGQVSIVEPTD   65 (706)
Q Consensus        29 ~~~~VvIIGg-G~aGl~aA~~L~~~~~~~~Vtlie~~~   65 (706)
                      ..++|+|.|| |-.|..+|..|.++  |.+|++++++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccch
Confidence            4578999995 89999999999999  89999999986

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=80.13  E-value=1.1  Score=38.67  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCC-CeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGK-GQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~-~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++..  + .+|+++|.++.
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~--G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKD   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHc--CCceeeccCChHH
Confidence            34799999999999999999887  5 47999998874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=80.12  E-value=0.99  Score=38.83  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCeEEEEcCCCC
Q psy8791          30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD   66 (706)
Q Consensus        30 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~Vtlie~~~~   66 (706)
                      ..+|+|+|+|..|+.++..++.. ...+|+.+|+++.
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPD   64 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGG
T ss_pred             CCEEEEEecCCccchHHHHHHHH-hhchheeecchHH
Confidence            45799999999999999998887 3457999998874