Psyllid ID: psy8844

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCNCFRRDSDLQLGPTVSMPVDSLSCDQLSMEEYEQVMEVLMVPRTR
ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccHHHEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEHEEEEEEEEHHHcccccHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEcccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHEEEccccc
MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNkynispddFKLLETLIlksephkagqqwkFAGSFYYATTVLTTigyghstpntiggkLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAkrlsgcteieATEINLICVVTTLSSLTIAVGAAAFsryegwtyfdSVYYCFITlttigfgdmvalqkdnaldtkpeYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRlegdvitadgsilsgqlgennavyhnistttsmctctcncfrrdsdlqlgptvsmpvdslscdqLSMEEYEQVMEVLMVPRTR
MKKQNIRTLSLIVCTFTYLLIGASVFdalesqtenrrwTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKakrlsgcteieaTEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCNCFRRDSDLQLGPTVSMPVDSLSCDQLSMEEYEQVMEVLMVPRTR
MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNIstttsmctctcncFRRDSDLQLGPTVSMPVDSLSCDQLSMEEYEQVMEVLMVPRTR
*****IRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMN****************GAVRLEGDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCNCFRRDSDLQLGPTVS*****************************
*KKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTED****************************************************************************************************
MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCNCFRRDSDLQLGPTVSMPVDSLSCDQLSMEEYEQVMEVLMVPRTR
MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVIT*****************HNISTTTSMCTCTCNCFRRDSDLQLGPTVSMPVDSLSCDQLSMEEYEQVMEVLMVPR*R
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCNCFRRDSDLQLGPTVSMPVDSLSCDQLSMEEYEQVMEVLMVPRTR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
O17185329 Two pore potassium channe yes N/A 0.835 0.896 0.574 2e-95
Q63ZI0374 Potassium channel subfami N/A N/A 0.736 0.695 0.576 1e-86
O14649394 Potassium channel subfami yes N/A 0.934 0.837 0.488 2e-86
O35111409 Potassium channel subfami yes N/A 0.798 0.689 0.551 3e-86
O54912411 Potassium channel subfami yes N/A 0.801 0.688 0.542 6e-86
Q9NPC2374 Potassium channel subfami no N/A 0.852 0.804 0.516 1e-85
Q9ES08396 Potassium channel subfami no N/A 0.762 0.679 0.562 6e-82
Q3LS21402 Potassium channel subfami no N/A 0.719 0.631 0.574 9e-82
Q9JL58365 Potassium channel subfami yes N/A 0.912 0.882 0.483 2e-81
Q8R5I0318 Potassium channel subfami no N/A 0.722 0.801 0.537 6e-74
>sp|O17185|SUP9_CAEEL Two pore potassium channel protein sup-9 OS=Caenorhabditis elegans GN=sup-9 PE=1 SV=2 Back     alignment and function desciption
 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/308 (57%), Positives = 226/308 (73%), Gaps = 13/308 (4%)

Query: 1   MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFK 60
           MK+QNIRTLSLIVCT TYLL+GA+VFDALE++ E  +   +  + + +  KYN+S  D++
Sbjct: 1   MKRQNIRTLSLIVCTLTYLLVGAAVFDALETENEILQRKLVQRVREKLKTKYNMSNADYE 60

Query: 61  LLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
           +LE  I+KS PHKAG QWKF+G+FY+ATTV+TTIGYGHSTP T  GK+F M YA+ GIPL
Sbjct: 61  ILEATIVKSVPHKAGYQWKFSGAFYFATTVITTIGYGHSTPMTDAGKVFCMLYALAGIPL 120

Query: 121 GLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSR 180
           GL+MFQSIGER+N  ++ ++R  +R +G   I  T  +LI   T    L I  GA  FS 
Sbjct: 121 GLIMFQSIGERMNTFAAKLLRFIRRAAGKQPI-VTSSDLIIFCTGWGGLLIFGGAFMFSS 179

Query: 181 YEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN 240
           YE WTYFD+VYYCF+TLTTIGFGD VALQK  +L T+PEYV F+L+FILFGL +++A++N
Sbjct: 180 YENWTYFDAVYYCFVTLTTIGFGDYVALQKRGSLQTQPEYVFFSLVFILFGLTVISAAMN 239

Query: 241 LLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTT 300
           LLVLRF+TMNTEDERRDE EA+ AAQG VR+ GD  TAD     G+L         +S  
Sbjct: 240 LLVLRFLTMNTEDERRDEQEAILAAQGLVRV-GDP-TADDDF--GRL--------PLSDN 287

Query: 301 TSMCTCTC 308
            S+ +C+C
Sbjct: 288 VSLASCSC 295
Potassium channel involved in coordination of muscle contraction.
Caenorhabditis elegans (taxid: 6239)
>sp|Q63ZI0|KCNK9_XENLA Potassium channel subfamily K member 9 OS=Xenopus laevis GN=kcnk9 PE=2 SV=1 Back     alignment and function description
>sp|O14649|KCNK3_HUMAN Potassium channel subfamily K member 3 OS=Homo sapiens GN=KCNK3 PE=1 SV=1 Back     alignment and function description
>sp|O35111|KCNK3_MOUSE Potassium channel subfamily K member 3 OS=Mus musculus GN=Kcnk3 PE=2 SV=2 Back     alignment and function description
>sp|O54912|KCNK3_RAT Potassium channel subfamily K member 3 OS=Rattus norvegicus GN=Kcnk3 PE=2 SV=1 Back     alignment and function description
>sp|Q9NPC2|KCNK9_HUMAN Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1 Back     alignment and function description
>sp|Q9ES08|KCNK9_RAT Potassium channel subfamily K member 9 OS=Rattus norvegicus GN=Kcnk9 PE=1 SV=2 Back     alignment and function description
>sp|Q3LS21|KCNK9_MOUSE Potassium channel subfamily K member 9 OS=Mus musculus GN=Kcnk9 PE=2 SV=1 Back     alignment and function description
>sp|Q9JL58|KCNK9_CAVPO Potassium channel subfamily K member 9 OS=Cavia porcellus GN=KCNK9 PE=1 SV=1 Back     alignment and function description
>sp|Q8R5I0|KCNKF_RAT Potassium channel subfamily K member 15 OS=Rattus norvegicus GN=Kcnk15 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
156552037408 PREDICTED: two pore potassium channel pr 0.883 0.764 0.808 1e-147
307209929369 Two pore potassium channel protein sup-9 0.883 0.845 0.801 1e-146
383856812367 PREDICTED: two pore potassium channel pr 0.883 0.850 0.798 1e-146
350415827366 PREDICTED: two pore potassium channel pr 0.883 0.852 0.798 1e-146
350415830367 PREDICTED: two pore potassium channel pr 0.883 0.850 0.798 1e-146
380021451368 PREDICTED: two pore potassium channel pr 0.883 0.847 0.795 1e-145
48095690367 PREDICTED: two pore potassium channel pr 0.883 0.850 0.795 1e-145
242007150347 acid-sensitive two pore domain K+ channe 0.830 0.844 0.843 1e-143
307169084367 Two pore potassium channel protein sup-9 0.883 0.850 0.785 1e-142
332028291367 Two pore potassium channel protein sup-9 0.883 0.850 0.779 1e-141
>gi|156552037|ref|XP_001603975.1| PREDICTED: two pore potassium channel protein sup-9-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/313 (80%), Positives = 280/313 (89%), Gaps = 1/313 (0%)

Query: 1   MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFK 60
           MKKQN+RTLSLIVCTFTYLL+GA++FD LES+TE RR   L  IE+M++ KYNIS DDFK
Sbjct: 1   MKKQNVRTLSLIVCTFTYLLVGAAIFDVLESETEKRRKEALDAIERMVIRKYNISEDDFK 60

Query: 61  LLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
           ++ET++LK+EPHKAGQQWKFAG+FYYATTVLTTIGYGHSTPNTI GKLFTMFYA+VGIPL
Sbjct: 61  IMETVVLKTEPHKAGQQWKFAGAFYYATTVLTTIGYGHSTPNTISGKLFTMFYAIVGIPL 120

Query: 121 GLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSR 180
           GLVMFQSIGERLNK SSVVIR  KRL  C +I+A+EINLICVVTTLS LTIA GAAAFSR
Sbjct: 121 GLVMFQSIGERLNKFSSVVIRNVKRLLNCKDIQASEINLICVVTTLSILTIAGGAAAFSR 180

Query: 181 YEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN 240
           YEGW+YFDSVYYCFITLTTIGFGDMVALQKDNALD KPEYV+FALIFILFGLAIVAASLN
Sbjct: 181 YEGWSYFDSVYYCFITLTTIGFGDMVALQKDNALDNKPEYVMFALIFILFGLAIVAASLN 240

Query: 241 LLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTT 300
           LLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITA+GSILSGQLG       ++   
Sbjct: 241 LLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITANGSILSGQLGTQGDTI-SLDDD 299

Query: 301 TSMCTCTCNCFRR 313
            S+C+C C+ F +
Sbjct: 300 ASVCSCRCSGFYK 312

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307209929|gb|EFN86707.1| Two pore potassium channel protein sup-9 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383856812|ref|XP_003703901.1| PREDICTED: two pore potassium channel protein sup-9-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350415827|ref|XP_003490760.1| PREDICTED: two pore potassium channel protein sup-9-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350415830|ref|XP_003490761.1| PREDICTED: two pore potassium channel protein sup-9-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|380021451|ref|XP_003694578.1| PREDICTED: two pore potassium channel protein sup-9-like [Apis florea] Back     alignment and taxonomy information
>gi|48095690|ref|XP_394509.1| PREDICTED: two pore potassium channel protein sup-9-like [Apis mellifera] Back     alignment and taxonomy information
>gi|242007150|ref|XP_002424405.1| acid-sensitive two pore domain K+ channel dTASK-6, putative [Pediculus humanus corporis] gi|212507805|gb|EEB11667.1| acid-sensitive two pore domain K+ channel dTASK-6, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307169084|gb|EFN61928.1| Two pore potassium channel protein sup-9 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332028291|gb|EGI68338.1| Two pore potassium channel protein sup-9 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
FB|FBgn0038165408 Task6 "TWIK-related acid-sensi 0.821 0.710 0.782 3.2e-120
FB|FBgn0037690340 Task7 "TWIK-related acid-sensi 0.832 0.864 0.614 4.8e-94
WB|WBGene00006318329 sup-9 [Caenorhabditis elegans 0.813 0.872 0.596 2.3e-87
UNIPROTKB|O17185329 sup-9 "Two pore potassium chan 0.813 0.872 0.596 2.3e-87
ZFIN|ZDB-GENE-040724-171390 kcnk3 "potassium channel, subf 0.728 0.658 0.591 1.5e-81
ZFIN|ZDB-GENE-070705-260490 kcnk9 "potassium channel, subf 0.750 0.540 0.588 2.5e-81
MGI|MGI:1100509409 Kcnk3 "potassium channel, subf 0.796 0.687 0.552 2.6e-79
RGD|61997411 Kcnk3 "potassium channel, subf 0.798 0.686 0.544 5.4e-79
UNIPROTKB|E1BYI0374 LOC100859545 "Uncharacterized 0.750 0.708 0.566 3.8e-78
UNIPROTKB|G3N1D1374 KCNK9 "Uncharacterized protein 0.750 0.708 0.581 4.8e-78
FB|FBgn0038165 Task6 "TWIK-related acid-sensitive K[+] channel 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 227/290 (78%), Positives = 261/290 (90%)

Query:     1 MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFK 60
             MKKQN+RT+SLIVCTFTYLL+GA+VFDALES+TE RRW  L D E MI+ KYNIS +DFK
Sbjct:     1 MKKQNVRTISLIVCTFTYLLVGAAVFDALESETEKRRWEALQDAEDMIIRKYNISQEDFK 60

Query:    61 LLETLILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
             ++ET++LKSE HKAGQQWKF G+FYYATTVLTTIGYGHSTP+T+GGKLFTM YA+VGIPL
Sbjct:    61 VMETVVLKSESHKAGQQWKFTGAFYYATTVLTTIGYGHSTPSTVGGKLFTMCYAIVGIPL 120

Query:   121 GLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSR 180
             GLVMFQSIGER+N+LSS VI+  +    C    A+E++LICVVTTLSSLTIA GAAAFS+
Sbjct:   121 GLVMFQSIGERVNRLSSYVIKAVRSSLRCKRTVASEVDLICVVTTLSSLTIAGGAAAFSK 180

Query:   181 YEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN 240
             +EGW+YFDSVYYCFITLTTIGFGDMVALQ+DNAL+ KPEYV+FALIFILFGLAIVAASLN
Sbjct:   181 FEGWSYFDSVYYCFITLTTIGFGDMVALQRDNALNRKPEYVMFALIFILFGLAIVAASLN 240

Query:   241 LLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGEN 290
             LLVLRFVTMNTEDERRDEA+A+QA Q AV+LEGDVIT++GSILSG  G +
Sbjct:   241 LLVLRFVTMNTEDERRDEAQAMQALQVAVKLEGDVITSNGSILSGYEGHD 290
GO:0005267 "potassium channel activity" evidence=ISS;IDA
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0071805 "potassium ion transmembrane transport" evidence=IDA
FB|FBgn0037690 Task7 "TWIK-related acid-sensitive K[+] channel 7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00006318 sup-9 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O17185 sup-9 "Two pore potassium channel protein sup-9" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040724-171 kcnk3 "potassium channel, subfamily K, member 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-260 kcnk9 "potassium channel, subfamily K, member 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1100509 Kcnk3 "potassium channel, subfamily K, member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|61997 Kcnk3 "potassium channel, subfamily K, member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYI0 LOC100859545 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3N1D1 KCNK9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JL58KCNK9_CAVPONo assigned EC number0.48340.91210.8821yesN/A
Q9NPC2KCNK9_HUMANNo assigned EC number0.51620.85260.8048noN/A
O17185SUP9_CAEELNo assigned EC number0.57460.83560.8966yesN/A
O14649KCNK3_HUMANNo assigned EC number0.48820.93480.8375yesN/A
O35111KCNK3_MOUSENo assigned EC number0.55100.79880.6894yesN/A
O54912KCNK3_RATNo assigned EC number0.54260.80160.6885yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
pfam0788574 pfam07885, Ion_trans_2, Ion channel 2e-13
pfam0788574 pfam07885, Ion_trans_2, Ion channel 1e-10
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information 
 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 73  KAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIG 129
           + G  W F  + Y++   LTTIGYG   P T  G+LFT+ Y ++GIPL L+    +G
Sbjct: 18  EEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
KOG4404|consensus350 100.0
KOG1418|consensus433 100.0
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.51
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.44
PRK10537393 voltage-gated potassium channel; Provisional 99.44
KOG3713|consensus477 99.32
KOG4404|consensus350 99.11
KOG1545|consensus507 99.1
KOG3713|consensus477 99.06
PRK10537393 voltage-gated potassium channel; Provisional 98.88
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.84
KOG1420|consensus 1103 98.83
KOG4390|consensus 632 98.8
KOG1419|consensus 654 98.78
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.71
KOG1418|consensus 433 98.63
KOG1420|consensus 1103 98.56
KOG1419|consensus 654 98.43
KOG1545|consensus507 98.39
KOG0498|consensus 727 98.25
KOG0501|consensus 971 98.24
KOG0498|consensus 727 98.16
KOG3193|consensus 1087 98.16
KOG3684|consensus489 98.03
KOG4390|consensus632 98.01
KOG3684|consensus489 97.65
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.62
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.1
PRK05482559 potassium-transporting ATPase subunit A; Provision 96.9
KOG0501|consensus 971 96.76
KOG3193|consensus 1087 95.95
PRK10750483 potassium transporter; Provisional 95.85
TIGR00933390 2a38 potassium uptake protein, TrkH family. The pr 95.72
KOG0500|consensus536 95.54
PF00520200 Ion_trans: Ion transport protein calcium channel s 95.0
KOG3827|consensus400 94.94
KOG0500|consensus 536 94.66
TIGR00933390 2a38 potassium uptake protein, TrkH family. The pr 93.81
KOG3827|consensus 400 92.98
PF02386354 TrkH: Cation transport protein; InterPro: IPR00344 92.21
COG0168499 TrkG Trk-type K+ transport systems, membrane compo 91.07
TIGR00934800 2a38euk potassium uptake protein, Trk family. The 90.41
PF00520200 Ion_trans: Ion transport protein calcium channel s 89.42
KOG0499|consensus 815 86.24
COG0168 499 TrkG Trk-type K+ transport systems, membrane compo 84.35
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 81.04
KOG0499|consensus 815 81.02
>KOG4404|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.9e-75  Score=548.30  Aligned_cols=317  Identities=56%  Similarity=0.883  Sum_probs=284.0

Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccc
Q psy8844           1 MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKF   80 (353)
Q Consensus         1 mk~~~vr~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~   80 (353)
                      ||+||+|+++|++|+++|+++||+||++||+++|.++++.+++.++++++|||+|++|++.+|+++.+++||+++++|+|
T Consensus         2 m~~qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF   81 (350)
T KOG4404|consen    2 MKRQNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKF   81 (350)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCcccccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhHHH
Q psy8844          81 AGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLI  160 (353)
Q Consensus        81 ~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~l~  160 (353)
                      .+||||++|++|||||||.+|.|.+||+|||+|+++|||+++++|+++|++++++.+.++++.|+....++.+++..+++
T Consensus        82 ~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r~~~~S~~~l~  161 (350)
T KOG4404|consen   82 AGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRRRWDVSVYNLV  161 (350)
T ss_pred             CcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888889999999


Q ss_pred             HHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHH
Q psy8844         161 CVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN  240 (353)
Q Consensus       161 l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~  240 (353)
                      ++.+....++++.||++|+.+|+|||+||+||||||+|||||||+|+.|++++++++|.|+.+++++|++|+++++.++|
T Consensus       162 ~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~N  241 (350)
T KOG4404|consen  162 LILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLN  241 (350)
T ss_pred             HHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhCCCEEEe-cccCCCCCcccccccCCCCccccccCCCCCceeeeecCCCCCCCCC
Q psy8844         241 LLVLRFVTMNTEDERRDEAEALQAAQGAVRLE-GDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCNCFRRDSDLQ  318 (353)
Q Consensus       241 ~i~~~~~~~~~~~~~r~~~~~~~~l~~hviv~-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~csc~c~~~~~~~~~~  318 (353)
                      +++.+|++++.++++|++++......+..-+. |++....+...+...++.+ ..-.-....+.|||.|.+.+.++.++
T Consensus       242 llvLrf~t~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~  319 (350)
T KOG4404|consen  242 LLVLRFMTMNAEDERRDEQEACSAAQNARGLGGGDSPRRNNAAASFGCGRRR-SSMRDSVTSSLASCHLRQKQLSECLN  319 (350)
T ss_pred             HHHHHHHHhhhHHHHHHHhhhHHHhcccccCCCCCCCCcCccccccccccCC-ccccccccccceeeeeeccccccccc
Confidence            99999999999999999988655544443333 2444444432222222222 11122457789999999877766666

>KOG1418|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PRK05482 potassium-transporting ATPase subunit A; Provisional Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>PRK10750 potassium transporter; Provisional Back     alignment and domain information
>TIGR00933 2a38 potassium uptake protein, TrkH family Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>TIGR00933 2a38 potassium uptake protein, TrkH family Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3 Back     alignment and domain information
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00934 2a38euk potassium uptake protein, Trk family Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
3um7_A309 Crystal Structure Of The Human Two Pore Domain K+ I 1e-19
3ukm_A280 Crystal Structure Of The Human Two Pore Domain Pota 3e-16
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309 Back     alignment and structure 
Iteration: 1

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 22  GASVFDALESQTENRRWTTLSDI-EKMIMNKYNISPDDFKLL-----ETLILKSEPHKAG 75
           GA VF ALE   E +    L ++ EK +     +S  +  LL     + L   ++P    
Sbjct: 46  GALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQS 105
Query: 76  Q------QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIG 129
                   W    +F+++ T++TTIGYG+    T  G+LF +FYA+VGIPL  ++   +G
Sbjct: 106 TSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVG 165
Query: 130 ERLNKLSSVVIRKAKRLSGCTEIEA------TEINLICVVTTLSSLTIAV------GAAA 177
           +RL          +    G   IEA          L+ V++ +  L I            
Sbjct: 166 DRLG---------SSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFV 216
Query: 178 FSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAA 237
           F   E W+  +++Y+  +TLTT+GFGD VA   D   D+ P Y      +IL GLA  A+
Sbjct: 217 FCYMEDWSKLEAIYFVIVTLTTVGFGDYVA-GADPRQDS-PAYQPLVWFWILLGLAYFAS 274
Query: 238 SLNLL--VLRFVTMNTEDE 254
            L  +   LR V+  T  E
Sbjct: 275 VLTTIGNWLRVVSRRTRAE 293
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
3um7_A309 Potassium channel subfamily K member 4; potassium 5e-62
3ukm_A280 Potassium channel subfamily K member 1; membrane p 6e-56
3ukm_A280 Potassium channel subfamily K member 1; membrane p 2e-05
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 3e-15
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 1e-08
2q67_A114 Potassium channel protein; inverted teepee, helix 1e-13
2q67_A114 Potassium channel protein; inverted teepee, helix 6e-09
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 2e-13
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 2e-08
3ouf_A97 Potassium channel protein; ION channel, membrane, 7e-13
3ouf_A97 Potassium channel protein; ION channel, membrane, 1e-08
1lnq_A 336 MTHK channels, potassium channel related protein; 5e-10
1lnq_A336 MTHK channels, potassium channel related protein; 1e-07
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 1e-05
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 5e-05
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 1e-05
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 3e-05
1p7b_A333 Integral membrane channel and cytosolic domains; t 2e-05
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2a9h_A155 Voltage-gated potassium channel; potassium channel 5e-05
2a9h_A155 Voltage-gated potassium channel; potassium channel 4e-04
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 6e-05
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 7e-05
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 7e-05
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 7e-05
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 8e-05
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 5e-04
1xl4_A301 Inward rectifier potassium channel; integral membr 1e-04
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 3e-04
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309 Back     alignment and structure
 Score =  200 bits (508), Expect = 5e-62
 Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 19/286 (6%)

Query: 2   KKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDI-EKMIMNKYNISPDDFK 60
             ++   L+L+     YL+ GA VF ALE   E +    L ++ EK +     +S  +  
Sbjct: 26  AMRSTTLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELG 85

Query: 61  LLETLILK-----------SEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLF 109
           LL   +             S    +   W    +F+++ T++TTIGYG+    T  G+LF
Sbjct: 86  LLIKEVADALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLF 145

Query: 110 TMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTL--- 166
            +FYA+VGIPL  ++   +G+RL       I   + +     +    + ++  +  L   
Sbjct: 146 CIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIG 205

Query: 167 SSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALI 226
             L +      F   E W+  +++Y+  +TLTT+GFGD VA    +     P Y      
Sbjct: 206 CLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVA--GADPRQDSPAYQPLVWF 263

Query: 227 FILFGLAIVAASLNLL--VLRFVTMNTEDERRDEAEALQAAQGAVR 270
           +IL GLA  A+ L  +   LR V+  T  E         + +   +
Sbjct: 264 WILLGLAYFASVLTTIGNWLRVVSRRTRAEMGGLTAQSNSLEVLFQ 309
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
3um7_A309 Potassium channel subfamily K member 4; potassium 100.0
3ukm_A280 Potassium channel subfamily K member 1; membrane p 100.0
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.68
2q67_A114 Potassium channel protein; inverted teepee, helix 99.66
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.65
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.64
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.64
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.63
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.63
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.63
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.62
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.6
2q67_A114 Potassium channel protein; inverted teepee, helix 99.59
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.59
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.58
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.58
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.57
1lnq_A 336 MTHK channels, potassium channel related protein; 99.53
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.5
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 99.5
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.5
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.47
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.43
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.36
1xl4_A301 Inward rectifier potassium channel; integral membr 99.35
3um7_A309 Potassium channel subfamily K member 4; potassium 99.34
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.34
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.33
1p7b_A333 Integral membrane channel and cytosolic domains; t 99.32
3ukm_A280 Potassium channel subfamily K member 1; membrane p 99.31
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.26
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.22
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.21
1lnq_A336 MTHK channels, potassium channel related protein; 99.12
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 99.02
1xl4_A301 Inward rectifier potassium channel; integral membr 98.97
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 98.96
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.88
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.84
3sya_A340 G protein-activated inward rectifier potassium CH; 98.82
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.71
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.58
3rvy_A285 ION transport protein; tetrameric ION channel, vol 98.32
3sya_A340 G protein-activated inward rectifier potassium CH; 98.3
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.16
3rvy_A285 ION transport protein; tetrameric ION channel, vol 96.89
3pjz_A494 Potassium uptake protein TRKH; structural genomics 95.89
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 94.97
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 86.92
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-46  Score=361.08  Aligned_cols=241  Identities=27%  Similarity=0.490  Sum_probs=189.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhh-cCCChHHHHHHHHHHhh-----cC------CCCC
Q psy8844           7 RTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNK-YNISPDDFKLLETLILK-----SE------PHKA   74 (353)
Q Consensus         7 r~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~-~n~s~~~~~~~e~~~~~-----~~------~~~~   74 (353)
                      ..+.|++++++|+++||++|++||+|+|.+.++.+++.++++.++ +|++++|++.+...+.+     .+      ++..
T Consensus        31 ~~l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~  110 (309)
T 3um7_A           31 TLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSS  110 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCC
Confidence            356788999999999999999999999999888888888776554 56899998876654432     12      2334


Q ss_pred             CCCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy8844          75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEA  154 (353)
Q Consensus        75 ~~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~~i~~~~~~~~~~~~~~~  154 (353)
                      +++|+|.+|+||+++|+|||||||++|.|+.||+|+++|+++|||+++++++.+++.+.+..+...++.++....++...
T Consensus       111 ~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~  190 (309)
T 3um7_A          111 HSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPP  190 (309)
T ss_dssp             --CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--C
T ss_pred             CCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccch
Confidence            56899999999999999999999999999999999999999999999999999999998877666665554433222222


Q ss_pred             chhHH---HHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHH
Q psy8844         155 TEINL---ICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFG  231 (353)
Q Consensus       155 ~~~~l---~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~G  231 (353)
                      ....+   ++.+.+...+++++|+++|+..|+|+|+||+||+++|+|||||||++|.++.+.  .+|.|++++++++++|
T Consensus       191 ~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~--~~~~y~~~~~~~il~G  268 (309)
T 3um7_A          191 ELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQ--DSPAYQPLVWFWILLG  268 (309)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTC--CCSTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCcccc--ccchHHHHHHHHHHHH
Confidence            22221   222222234567889999999999999999999999999999999999875432  2578999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy8844         232 LAIVAASLNLLVLRFVTM  249 (353)
Q Consensus       232 l~~~a~~~~~i~~~~~~~  249 (353)
                      +++++++++.+...+...
T Consensus       269 l~~~a~~~~~i~~~~~~~  286 (309)
T 3um7_A          269 LAYFASVLTTIGNWLRVV  286 (309)
T ss_dssp             HHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999877665443
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus} Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 353
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 7e-13
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 6e-10
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 1e-07
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 3e-04
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 4e-07
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 4e-06
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 5e-06
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 0.001
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 61.3 bits (149), Expect = 7e-13
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 166 LSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFAL 225
           L    I  G A F   EG ++  S+Y+ F+T+ T+G+GD           + P  + F +
Sbjct: 8   LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP--------STPLGMYFTV 59

Query: 226 IFILFGLAIVAASLNLLV 243
             I+ G+   A ++  L+
Sbjct: 60  TLIVLGIGTFAVAVERLL 77
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.62
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.54
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.51
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.48
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.33
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.33
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.17
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.15
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.98
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 96.62
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.62  E-value=2.5e-16  Score=126.11  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=63.1

Q ss_pred             HHHHHhhhHHHhhhcC-------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHH
Q psy8844         168 SLTIAVGAAAFSRYEG-------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN  240 (353)
Q Consensus       168 ~~~i~~ga~~f~~~E~-------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~  240 (353)
                      ++.+++++.++...|+       .+|.||+||+++|+|||||||++|.        ++.+|+++.+++++|+.+++..++
T Consensus        16 ~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~--------t~~gr~~~~~~~~~Gi~~~~~~~~   87 (103)
T d1r3jc_          16 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV--------TLWGRCVAVVVMVAGITSFGLVTA   87 (103)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCC--------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccC--------ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777776664       4789999999999999999999994        478999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy8844         241 LLVLRFVTM  249 (353)
Q Consensus       241 ~i~~~~~~~  249 (353)
                      .+...+.+.
T Consensus        88 ~i~~~~~~~   96 (103)
T d1r3jc_          88 ALATWFVGR   96 (103)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure