Psyllid ID: psy8849

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccEEEEEccccHHccccHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccEcccccccEEEEEcccEEEEEEcHHHHHHHcHHHHHcccccccc
Coil and Loop (DISEMBL)
MNINKRQIIVIKILKDikaqdikvydtsnltnlfdritiasgssKRQINALAVSIRKNIKNINNNIVniegkksseWLLLDLGDIIIHIMNPYirnmynleeiwgekeikfn
Flexible Loop (DISEMBL)
MNINKRQIIVIKilkdikaqdikvydtsnltnLFDRitiasgsskrQINALAVSIRKNIKNINNNIvniegkksseWLLLDLGDIIIHIMNPYIRNMYNLEeiwgekeikfn
Low Complexity Region (SEG)
MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRknikninnnivniegkkSSEWllldlgdiiihiMNPYIRNMYNLEEIWGEKEIKFN
Disordered region (IsUnstruct)
*****RQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGE******
Disordered Region (DISOPRED)
***NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEK*****
Disordered Region (DISEMBL)
MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN
Disordered Region (DISPRO)
*NINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKE****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q7P0P8	122	Ribosomal silencing facto	yes	N/A	0.991	0.909	0.423	3e-23
Q5NLX3	133	Ribosomal silencing facto	yes	N/A	0.866	0.729	0.391	3e-16
Q97P97	117	Ribosomal silencing facto	yes	N/A	0.928	0.888	0.330	1e-14
P0AAT8	105	Ribosomal silencing facto	yes	N/A	0.928	0.990	0.307	1e-12
P0AAT6	105	Ribosomal silencing facto	N/A	N/A	0.928	0.990	0.307	1e-12
P0AAT7	105	Ribosomal silencing facto	yes	N/A	0.928	0.990	0.307	1e-12
Q96EH3	234	Mitochondrial assembly of	yes	N/A	0.857	0.410	0.343	2e-12
P44471	102	Ribosomal silencing facto	yes	N/A	0.857	0.941	0.322	2e-12
Q9CWV0	228	Mitochondrial assembly of	yes	N/A	0.857	0.421	0.333	2e-12
Q9KD89	117	Ribosomal silencing facto	yes	N/A	0.875	0.837	0.285	6e-11

>sp|Q7P0P8|IOJAP_CHRVO Ribosomal silencing factor RsfS OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rsfS PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 75/111 (67%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M I +   + I+ L+DIK +DI   DTS LT+LF R+ +A+G S RQ+ ALA S++  +K
Sbjct: 1   MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
               +IV  EG +S EW+L+D GD+++H+M P +R+ Y++E +WG ++  F
Sbjct: 61  EAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPSF 111

Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

>sp|Q5NLX3|IOJAP_ZYMMO Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rsfS PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
           +V   L D +A +I     +  +++ D + IASG S RQ+ A+A  +   IK     +  
Sbjct: 22  LVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAATGYVSK 81

Query: 69  IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWG 105
           IEG  +++W+LLD GDIIIH+  P +R+ YNLE +WG
Sbjct: 82  IEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWG 118

Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.

Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

>sp|Q97P97|IOJAP_STRPN Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 3   INKRQII--VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           +N+++++  V+K   + +A+DI   D  +LT++ D + I S  + RQ++A+A +IR+ + 
Sbjct: 1   MNEKELLELVVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVA 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGE 106
                  ++EG  +  W+LLDLG +++HI +  +R  YNLE++W E
Sbjct: 61  QAGFKGSHVEGDAAGGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHE 106

Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.

Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (taxid: 170187)

>sp|P0AAT8|IOJAP_SHIFL Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 60/104 (57%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M     Q  VI  + D+K QDI   D    +++ D + I +G+S R + ++A  + +  +
Sbjct: 1   MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
                 + +EG+ S++W+++DLGD+I+H+M    R +Y LE++W
Sbjct: 61  AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104

Shigella flexneri (taxid: 623)

>sp|P0AAT6|IOJAP_ECOLI Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) GN=rsfS PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 60/104 (57%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M     Q  VI  + D+K QDI   D    +++ D + I +G+S R + ++A  + +  +
Sbjct: 1   MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
                 + +EG+ S++W+++DLGD+I+H+M    R +Y LE++W
Sbjct: 61  AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AAT7|IOJAP_ECOL6 Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsfS PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 60/104 (57%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M     Q  VI  + D+K QDI   D    +++ D + I +G+S R + ++A  + +  +
Sbjct: 1   MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
                 + +EG+ S++W+++DLGD+I+H+M    R +Y LE++W
Sbjct: 61  AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|Q96EH3|MASU1_HUMAN Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo sapiens GN=MALSU1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALA---VSIRKNIKNINNN 65
           +++ +L+   A+DI V          D   I SG+S R ++A+A   V + K++K   + 
Sbjct: 96  MMVSLLRQENARDICVIQVPPEMRYTDYFVIVSGTSTRHLHAMAFYVVKMYKHLKCKRDP 155

Query: 66  IVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
            V IEGK + +WL +D G ++IH+M P  R +Y LE++W
Sbjct: 156 HVKIEGKDTDDWLCVDFGSMVIHLMLPETREIYELEKLW 194

Participates in the assembly and/or regulation of the stability of the large subunit of the mitochondrial ribosome.

Homo sapiens (taxid: 9606)

>sp|P44471|IOJAP_HAEIN Ribosomal silencing factor RsfS OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsfS PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 56/96 (58%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
            +++ L  +K  DI  +D    +++ D + I +G+S RQ++A+A ++    K        
Sbjct: 6   FLMETLDGLKGTDIVHFDVRGKSSITDNMIICTGTSSRQVSAMADNLITECKKAGFETFG 65

Query: 69  IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
            EGK +++W+++DLG  I+HIM    R MY LE++W
Sbjct: 66  EEGKNTADWIVVDLGQAIVHIMQRDAREMYQLEKLW 101

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q9CWV0|MASU1_MOUSE Mitochondrial assembly of ribosomal large subunit protein 1 OS=Mus musculus GN=Malsu1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALA---VSIRKNIKNINNN 65
           +++ +L+   A+DI V          D   I SG+S R ++A+    V + K++K  ++ 
Sbjct: 90  MLVSLLRQENARDICVIQVPPEMRYTDYFVIGSGTSTRHLHAMVHYLVKMYKHLKCRSDP 149

Query: 66  IVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
            V IEGK + +WL +D G ++IH+M P  R  Y LE++W
Sbjct: 150 YVKIEGKDADDWLCVDFGSMVIHLMLPETRETYELEKLW 188

Participates in the assembly and/or regulation of the stability of the large subunit of the mitochondrial ribosome.

Mus musculus (taxid: 10090)

>sp|Q9KD89|IOJAP_BACHD Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsfS PE=1 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 58/98 (59%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
           + +  + D KA+ +   +   ++ + D   I  G+S++Q+ A+A  ++K  +     I  
Sbjct: 9   LAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKR 68

Query: 69  IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGE 106
           +EG + + W+L+DLGD+++H+ +   R  YNLE++WG+
Sbjct: 69  LEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGD 106

Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
152982104	220	hypothetical protein mma_0540 [Janthinob	1.0	0.509	0.607	3e-36
134093812	218	hypothetical protein HEAR0554 [Herminiim	1.0	0.513	0.589	2e-35
398835771	277	iojap-like ribosome-associated protein [	1.0	0.404	0.544	5e-35
399017846	245	iojap-like ribosome-associated protein [	1.0	0.457	0.553	5e-35
409407310	254	hypothetical protein GWL_29150 [Herbaspi	1.0	0.440	0.544	6e-35
300312856	256	hypothetical protein Hsero_3561 [Herbasp	1.0	0.437	0.544	8e-35
329911388	226	Iojap-like protein [Oxalobacteraceae bac	1.0	0.495	0.562	5e-34
340786239	208	hypothetical protein CFU_1049 [Collimona	1.0	0.538	0.562	5e-34
415944506	111	Iojap-like protein, partial [Herbaspiril	0.991	1.0	0.558	2e-33
374366985	252	hypothetical protein OR16_13814 [Cupriav	0.991	0.440	0.531	2e-32

>gi|152982104|ref|YP_001352230.1| hypothetical protein mma_0540 [Janthinobacterium sp. Marseille] gi|151282181|gb|ABR90591.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 87/112 (77%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q +VI  L+D+KAQDIKV+DT +LT+LFDRI +ASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQALVIDALEDVKAQDIKVFDTVHLTSLFDRIAVASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
               NIV+IEG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWGEKE+KF 
Sbjct: 61  AAGGNIVSIEGEDTGEWVLVDLGDMIVHIMQPAIRAYYRLEEIWGEKEVKFG 112

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134093812|ref|YP_001098887.1| hypothetical protein HEAR0554 [Herminiimonas arsenicoxydans] gi|133737715|emb|CAL60760.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 87/112 (77%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q +VI  L+D+KAQDIKV+DT +LT+LFDRI +ASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQALVIDALEDVKAQDIKVFDTVHLTSLFDRIAVASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
               N+++IEG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWGEKE+KF 
Sbjct: 61  ANGGNVLSIEGEDTGEWVLVDLGDMIVHIMQPAIRAYYRLEEIWGEKEVKFG 112

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398835771|ref|ZP_10593128.1| iojap-like ribosome-associated protein [Herbaspirillum sp. YR522] gi|398215209|gb|EJN01774.1| iojap-like ribosome-associated protein [Herbaspirillum sp. YR522]

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 88/112 (78%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q +V+  L+D+KAQ+I+V+DT++LT+LFDR+ IASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQTLVVDALEDVKAQEIRVFDTTHLTSLFDRVAIASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
           +   N+V++EG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWG+KE+K  
Sbjct: 61  SKGGNVVSVEGEDTGEWVLVDLGDMIVHIMQPAIRTYYRLEEIWGDKEVKMG 112

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399017846|ref|ZP_10720035.1| iojap-like ribosome-associated protein [Herbaspirillum sp. CF444] gi|398102613|gb|EJL92793.1| iojap-like ribosome-associated protein [Herbaspirillum sp. CF444]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 86/112 (76%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q  V+  L+D+KAQDIK+YDT++LT+LFDR+ IASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQTAVVDALEDVKAQDIKIYDTTHLTSLFDRVAIASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
               ++V++EG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWG+KE+K  
Sbjct: 61  AKGGHVVSVEGEDTGEWVLVDLGDMIVHIMQPAIRAYYRLEEIWGDKEVKMG 112

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|409407310|ref|ZP_11255761.1| hypothetical protein GWL_29150 [Herbaspirillum sp. GW103] gi|386433061|gb|EIJ45887.1| hypothetical protein GWL_29150 [Herbaspirillum sp. GW103]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 87/112 (77%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q +V+  L+D+KAQ+I+++DTS+LT+LFDR+ IASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQTLVVDALEDVKAQEIRIFDTSHLTSLFDRVAIASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
               N+V++EG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWG+KE+K  
Sbjct: 61  AKGGNVVSVEGEDTGEWVLVDLGDMIVHIMQPAIRTYYRLEEIWGDKEVKLG 112

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300312856|ref|YP_003776948.1| hypothetical protein Hsero_3561 [Herbaspirillum seropedicae SmR1] gi|300075641|gb|ADJ65040.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 87/112 (77%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q +V+  L+D+KAQ+I++YDT++LT+LFDR+ IASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQTLVVDALEDVKAQEIRIYDTTHLTSLFDRVAIASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
               N+V++EG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWG+KE+K  
Sbjct: 61  AKGGNVVSVEGEDTGEWVLVDLGDMIVHIMQPAIRTYYRLEEIWGDKEVKLG 112

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329911388|ref|ZP_08275494.1| Iojap-like protein [Oxalobacteraceae bacterium IMCC9480] gi|327545940|gb|EGF31038.1| Iojap-like protein [Oxalobacteraceae bacterium IMCC9480]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 87/112 (77%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I + Q +VI  L+D+KAQ+IKV+DT +LT+LFDRI +ASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKQLQALVIDALEDVKAQEIKVFDTVHLTSLFDRIVVASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
           +    I+++EG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWGEKE+KF 
Sbjct: 61  DNGGTILSVEGETTGEWVLVDLGDMIVHIMQPAIRAYYRLEEIWGEKEVKFG 112

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340786239|ref|YP_004751704.1| hypothetical protein CFU_1049 [Collimonas fungivorans Ter331] gi|340551506|gb|AEK60881.1| hypothetical protein CFU_1049 [Collimonas fungivorans Ter331]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 85/112 (75%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q +VI  L+D+KAQDI+VYDT +LT LFDRI IASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQSLVIDALEDVKAQDIRVYDTVHLTGLFDRIAIASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKFN 112
                I+++EG+ + EW+L+D+GD+++HIM P IR  Y LEEIWG+KE+KF 
Sbjct: 61  ENGGTILSVEGEDTGEWVLVDMGDMVVHIMQPAIRAYYRLEEIWGDKEVKFG 112

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|415944506|ref|ZP_11556245.1| Iojap-like protein, partial [Herbaspirillum frisingense GSF30] gi|407758488|gb|EKF68306.1| Iojap-like protein, partial [Herbaspirillum frisingense GSF30]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 87/111 (78%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q +V+  L+D+KAQ+I++YDT++LT+LFDR+ IASG+S RQ  ALA S+R  +K
Sbjct: 1   MDIKKLQTLVVDALEDVKAQEIRIYDTTHLTSLFDRVAIASGTSNRQTKALAASVRDKVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
               N+V+IEG+ + EW+L+DLGD+I+HIM P IR  Y LEEIWG+KE+K 
Sbjct: 61  AKGGNVVSIEGEDTGEWVLVDLGDMIVHIMQPAIRTYYRLEEIWGDKEVKL 111

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|374366985|ref|ZP_09625056.1| hypothetical protein OR16_13814 [Cupriavidus basilensis OR16] gi|373101432|gb|EHP42482.1| hypothetical protein OR16_13814 [Cupriavidus basilensis OR16]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 82/111 (73%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+I K Q  ++  L+D+KAQDIKVYDT++LT LFDR+ IASGSS RQ  ALA S+R  +K
Sbjct: 1   MDIRKLQRAIVDGLEDVKAQDIKVYDTTHLTELFDRVVIASGSSNRQTKALAASVRDTVK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
               +IV +EG ++ EW+L+D GD ++HIM P +R  YNLEE+WG+K ++ 
Sbjct: 61  EAGGHIVAVEGLETGEWVLVDCGDAVVHIMQPQLRMYYNLEELWGDKPVRL 111

Source: Cupriavidus basilensis OR16

Species: Cupriavidus basilensis

Genus: Cupriavidus

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
UNIPROTKB|Q8EHP7	109	SO_1170 "Iojap-like ribosome-a	0.910	0.935	0.320	4.1e-10
TIGR_CMR|SO_1170	109	SO_1170 "iojap domain protein"	0.910	0.935	0.320	4.1e-10
UNIPROTKB|Q606I9	114	MCA2027 "Iojap-related protein	0.875	0.859	0.265	8.7e-08
UNIPROTKB|Q83DY7	116	CBU_0552 "Iojap protein family	0.892	0.862	0.29	2.3e-07
TIGR_CMR|CBU_0552	116	CBU_0552 "iojap-related protei	0.892	0.862	0.29	2.3e-07
UNIPROTKB|Q97P97	117	rsfS "Ribosomal silencing fact	0.928	0.888	0.245	3.8e-07
UNIPROTKB|Q484R0	106	CPS_1717 "Iojap-related protei	0.946	1.0	0.254	1.6e-06
TIGR_CMR|CPS_1717	106	CPS_1717 "iojap-related protei	0.946	1.0	0.254	1.6e-06
UNIPROTKB|Q5LX03	128	SPO0219 "Iojap-related protein	0.848	0.742	0.252	5.5e-06
TIGR_CMR|SPO_0219	128	SPO_0219 "iojap-related protei	0.848	0.742	0.252	5.5e-06

UNIPROTKB|Q8EHP7 SO_1170 "Iojap-like ribosome-associated protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/103 (32%), Positives = 50/103 (48%)

Query:     6 RQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXX 65
             +Q +V KI  D+KA+D+ V D SN +N+ D + I SG+SK  + A+A ++          
Sbjct:     7 KQFVVDKI-DDLKARDVVVIDVSNQSNITDYMVICSGTSKTHVKAIAENLVIEAKAAGIP 65

Query:    66 XXXXXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGEKE 108
                     SSEW            M    R+ Y LE++W EK+
Sbjct:    66 PIGIEGRDSSEWVLVDMGNVILHVMQDQTRDFYQLEKLWSEKQ 108

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1170 SO_1170 "iojap domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/103 (32%), Positives = 50/103 (48%)

Query:     6 RQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXX 65
             +Q +V KI  D+KA+D+ V D SN +N+ D + I SG+SK  + A+A ++          
Sbjct:     7 KQFVVDKI-DDLKARDVVVIDVSNQSNITDYMVICSGTSKTHVKAIAENLVIEAKAAGIP 65

Query:    66 XXXXXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGEKE 108
                     SSEW            M    R+ Y LE++W EK+
Sbjct:    66 PIGIEGRDSSEWVLVDMGNVILHVMQDQTRDFYQLEKLWSEKQ 108

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q606I9 MCA2027 "Iojap-related protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 26/98 (26%), Positives = 42/98 (42%)

Query:     9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXXXXX 68
             IV+  L + K +D+K+ D    T + +   IASG+S R + +LA ++             
Sbjct:    11 IVVAALDEGKGRDVKIIDLRGKTTIAEFFVIASGTSDRHVRSLAGNVEASAKAHALQPFG 70

Query:    69 XXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGE 106
                  + EW            M P +R  Y LE++W E
Sbjct:    71 LEGEDAGEWVVVDLGDVVVHVMKPPVREFYQLEKLWAE 108

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83DY7 CBU_0552 "Iojap protein family" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 29/100 (29%), Positives = 44/100 (44%)

Query:     9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXXXXX 68
             +VI  L + KA  I   D + LT+L DR+ + S +SKR  +ALA  +             
Sbjct:     9 LVINTLDEHKALQITDLDVTTLTDLMDRMIVCSATSKRHASALADKVIRRAKENGIRPLG 68

Query:    69 XXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGEKE 108
                   +EW            M P +R+ Y+LE++W   E
Sbjct:    69 VEGEAEAEWILIDLYDVIVHIMLPEVRDFYSLEKLWSVTE 108

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0552 CBU_0552 "iojap-related protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 29/100 (29%), Positives = 44/100 (44%)

Query:     9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXXXXX 68
             +VI  L + KA  I   D + LT+L DR+ + S +SKR  +ALA  +             
Sbjct:     9 LVINTLDEHKALQITDLDVTTLTDLMDRMIVCSATSKRHASALADKVIRRAKENGIRPLG 68

Query:    69 XXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGEKE 108
                   +EW            M P +R+ Y+LE++W   E
Sbjct:    69 VEGEAEAEWILIDLYDVIVHIMLPEVRDFYSLEKLWSVTE 108

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q97P97 rsfS "Ribosomal silencing factor RsfS" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 26/106 (24%), Positives = 50/106 (47%)

Query:     3 INKRQII--VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXX 60
             +N+++++  V+K   + +A+DI   D  +LT++ D + I S  + RQ++A+A +IR    
Sbjct:     1 MNEKELLELVVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVA 60

Query:    61 XXXXXXXXXXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGE 106
                          +  W             +  +R  YNLE++W E
Sbjct:    61 QAGFKGSHVEGDAAGGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHE 106

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q484R0 CPS_1717 "Iojap-related protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 27/106 (25%), Positives = 45/106 (42%)

Query:     1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXX 60
             M   + +  VI+ L+D+K +DI   + S+  +  D + I SG+S R + ++A S+     
Sbjct:     1 MQTEQLKAFVIEKLEDMKGRDIIALNISDKASFADYMIICSGNSNRHVKSIAQSVAMECR 60

Query:    61 XXXXXXXXXXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGE 106
                            EW            M    R+ YNLE++W E
Sbjct:    61 AQGTEPRGMEGNDVGEWALVDLADIIVHVMTDEQRDKYNLEQLWAE 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1717 CPS_1717 "iojap-related protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 27/106 (25%), Positives = 45/106 (42%)

Query:     1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXX 60
             M   + +  VI+ L+D+K +DI   + S+  +  D + I SG+S R + ++A S+     
Sbjct:     1 MQTEQLKAFVIEKLEDMKGRDIIALNISDKASFADYMIICSGNSNRHVKSIAQSVAMECR 60

Query:    61 XXXXXXXXXXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGE 106
                            EW            M    R+ YNLE++W E
Sbjct:    61 AQGTEPRGMEGNDVGEWALVDLADIIVHVMTDEQRDKYNLEQLWAE 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LX03 SPO0219 "Iojap-related protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 24/95 (25%), Positives = 40/95 (42%)

Query:    10 VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXXXXXX 69
             ++  L D KA+D+   D    T++ D + IASG S RQ++A+A  +              
Sbjct:    24 ILTSLNDDKAEDLVQIDLRGKTSMGDYMVIASGRSTRQVSAMAEKLVQRLKDEFGLNSKI 83

Query:    70 XXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIW 104
                 + +W              P +R  Y LE++W
Sbjct:    84 EGKDAGDWVLIDTGDVIVHIFRPEVREFYQLEKMW 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0219 SPO_0219 "iojap-related protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 24/95 (25%), Positives = 40/95 (42%)

Query:    10 VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXXXXXX 69
             ++  L D KA+D+   D    T++ D + IASG S RQ++A+A  +              
Sbjct:    24 ILTSLNDDKAEDLVQIDLRGKTSMGDYMVIASGRSTRQVSAMAEKLVQRLKDEFGLNSKI 83

Query:    70 XXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIW 104
                 + +W              P +R  Y LE++W
Sbjct:    84 EGKDAGDWVLIDTGDVIVHIFRPEVREFYQLEKMW 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9KD89	IOJAP_BACHD	No assigned EC number	0.2857	0.875	0.8376	yes	N/A
Q5NLX3	IOJAP_ZYMMO	No assigned EC number	0.3917	0.8660	0.7293	yes	N/A
P0AAT7	IOJAP_ECOL6	No assigned EC number	0.3076	0.9285	0.9904	yes	N/A
P0AAT8	IOJAP_SHIFL	No assigned EC number	0.3076	0.9285	0.9904	yes	N/A
Q7P0P8	IOJAP_CHRVO	No assigned EC number	0.4234	0.9910	0.9098	yes	N/A
O83720	IOJAP_TREPA	No assigned EC number	0.2477	0.8839	0.8918	yes	N/A
Q97P97	IOJAP_STRPN	No assigned EC number	0.3301	0.9285	0.8888	yes	N/A
P44471	IOJAP_HAEIN	No assigned EC number	0.3229	0.8571	0.9411	yes	N/A
P54457	IOJAP_BACSU	No assigned EC number	0.2935	0.9553	0.9067	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
COG0799	115	COG0799, COG0799, Uncharacterized homolog of plant	2e-34
pfam02410	99	pfam02410, Oligomerisation, Oligomerisation domain	1e-33
TIGR00090	99	TIGR00090, iojap_ybeB, iojap-like ribosome-associa	4e-33
PRK11538	105	PRK11538, PRK11538, ribosome-associated protein; P	3e-17

>gnl|CDD|223870 COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]

 Score =  114 bits (288), Expect = 2e-34
 Identities = 40/109 (36%), Positives = 69/109 (63%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M++ +   ++++ L D KA+DI V D S  ++L D   IA+G+S R + A+A ++++ +K
Sbjct: 1   MSMEELLEVIVEALDDKKAEDIVVLDVSGKSSLTDYFVIATGNSSRHVKAIADNVKEELK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109
                 + IEG    EW+L+DLGDI++H+  P  R  YNLE++WG+  +
Sbjct: 61  EAGEVPLRIEGLSEGEWVLIDLGDIVVHVFTPEEREFYNLEKLWGDAPV 109

Length = 115

>gnl|CDD|217021 pfam02410, Oligomerisation, Oligomerisation domain

 Score =  111 bits (281), Expect = 1e-33
 Identities = 35/96 (36%), Positives = 60/96 (62%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
           +++K L D KA+DI V D S  +++ D   IA+G+S R + A+A ++ + +K      + 
Sbjct: 4   LIVKALDDKKAEDIVVLDVSKKSSIADYFVIATGTSTRHVKAIADNVEEELKEAGLKPLG 63

Query: 69  IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
           +EG    +W+LLD GD+++HI  P  R  Y+LE++W
Sbjct: 64  VEGLDEGDWVLLDYGDVVVHIFTPEAREFYDLEKLW 99

In yeasts, this domain is required for the oligomerisation of ATP synthase subunit 9 into a ring structure. Length = 99

>gnl|CDD|161702 TIGR00090, iojap_ybeB, iojap-like ribosome-associated protein

 Score =  110 bits (278), Expect = 4e-33
 Identities = 34/96 (35%), Positives = 61/96 (63%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
           ++++ L D KA+DI V D    +++ D   IASG+S R + A+A ++ + +K      + 
Sbjct: 4   LIVEALDDKKAEDIVVLDVRGKSSIADYFVIASGTSSRHVKAIADNVEEELKEAGLKPLG 63

Query: 69  IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
           +EG +  +W+L+DLGD+++HI  P  R  Y+LE++W
Sbjct: 64  VEGLEEGDWVLVDLGDVVVHIFQPEAREFYDLEKLW 99

This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown [Unknown function, General]. Length = 99

>gnl|CDD|183184 PRK11538, PRK11538, ribosome-associated protein; Provisional

 Score = 70.6 bits (173), Expect = 3e-17
 Identities = 30/99 (30%), Positives = 59/99 (59%)

Query: 7   QIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNI 66
           Q  VI  + D+K QDI   D    +++ D + I +G+S R + ++A  + +  +      
Sbjct: 7   QDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESRAAGLLP 66

Query: 67  VNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWG 105
           + +EG+ +++W+++DLGD+I+H+M    R +Y LE++W 
Sbjct: 67  LGVEGENAADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
COG0799	115	Uncharacterized homolog of plant Iojap protein [Fu	100.0
PRK11538	105	ribosome-associated protein; Provisional	100.0
TIGR00090	99	iojap_ybeB iojap-like ribosome-associated protein.	100.0
PF02410	100	Oligomerisation: Oligomerisation domain; InterPro:	100.0
KOG3212|consensus	208		99.98
PRK10678	150	moaE molybdopterin guanine dinucleotide biosynthes	85.35
PRK05568	142	flavodoxin; Provisional	84.51
COG0314	149	MoaE Molybdopterin converting factor, large subuni	81.03
PRK09271	160	flavodoxin; Provisional	80.67

>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]

Probab=100.00  E-value=4.5e-48  Score=267.49  Aligned_cols=110  Identities=36%  Similarity=0.709  Sum_probs=107.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849           1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL   80 (112)
Q Consensus         1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll   80 (112)
                      |+..++++.++++|+|+||+||++||++++|++|||||||||+|.||++|+|+++.+.+|+.|..+.++||..+++|+|+
T Consensus         1 ~~~~~l~~~i~~alddkKAeDIv~lDv~~~s~~tDyfVIatg~s~rhv~Aiad~i~~~~k~~g~~~~~~EG~~~~~Wvli   80 (115)
T COG0799           1 MSMEELLEVIVEALDDKKAEDIVVLDVSGKSSLTDYFVIATGNSSRHVKAIADNVKEELKEAGEVPLRIEGLSEGEWVLI   80 (115)
T ss_pred             CcHHHHHHHHHHHHHhccCCCeEEEEccCCcccccEEEEEEeCchHHHHHHHHHHHHHHHHcCCCcccccCCCcCCEEEE
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCEEEEeeChhhhhhcchhhhccccccc
Q psy8849          81 DLGDIIIHIMNPYIRNMYNLEEIWGEKEIK  110 (112)
Q Consensus        81 D~g~vvVHif~~e~R~~Y~LE~LW~~~~~~  110 (112)
                      |+|+||||||+|+.|+|||||+||+++|..
T Consensus        81 D~GdivVHvf~~e~R~~Y~LEklW~d~~~~  110 (115)
T COG0799          81 DLGDIVVHVFTPEEREFYNLEKLWGDAPVV  110 (115)
T ss_pred             ecCcEEEEecCHHHHHHccHHHHhccCCcc
Confidence            999999999999999999999999999853

>PRK11538 ribosome-associated protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=257.08  Aligned_cols=105  Identities=30%  Similarity=0.589  Sum_probs=102.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849           1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL   80 (112)
Q Consensus         1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll   80 (112)
                      |+++++++.++++|+++||+||+++||++.|+++||||||||+|.||++|+|++|.+.+|+.|.+++++||.++++|+++
T Consensus         1 ~~~~~~~~~i~~~l~dkKa~DI~vlDv~~~~~~~Dy~VIatg~S~rh~~aia~~v~~~~k~~~~~~~~~eG~~~~~Will   80 (105)
T PRK11538          1 MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESRAAGLLPLGVEGENAADWIVV   80 (105)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCcccCCCCCCEEEE
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCEEEEeeChhhhhhcchhhhcc
Q psy8849          81 DLGDIIIHIMNPYIRNMYNLEEIWG  105 (112)
Q Consensus        81 D~g~vvVHif~~e~R~~Y~LE~LW~  105 (112)
                      |||+||||||+|+.|+|||||+||+
T Consensus        81 D~g~ivVHif~~e~Re~Y~LE~LW~  105 (105)
T PRK11538         81 DLGDVIVHVMQEESRRLYELEKLWS  105 (105)
T ss_pred             eCCCEEEEcCCHHHHhhcCHHhhhC
Confidence            9999999999999999999999996

>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein

Probab=100.00  E-value=3.5e-45  Score=247.44  Aligned_cols=98  Identities=35%  Similarity=0.713  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEEEcCCEE
Q psy8849           7 QIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDII   86 (112)
Q Consensus         7 ~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~WvllD~g~vv   86 (112)
                      ++.++++|+++||+||+++|+++.++++||||||||+|.||++|+|+++.+.+|+.|.+|+++||.++++|+++|||+|+
T Consensus         2 ~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VI~Tg~S~rh~~aia~~v~~~~k~~~~~~~~~EG~~~~~WillD~g~iv   81 (99)
T TIGR00090         2 LELIVEALDDKKAEDIVVLDVRGKSSIADYFVIASGTSSRHVKAIADNVEEELKEAGLKPLGVEGLEEGDWVLVDLGDVV   81 (99)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCEEEEECCCEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeChhhhhhcchhhhc
Q psy8849          87 IHIMNPYIRNMYNLEEIW  104 (112)
Q Consensus        87 VHif~~e~R~~Y~LE~LW  104 (112)
                      ||||+||.|+|||||+||
T Consensus        82 VHif~~e~R~~Y~LE~LW   99 (99)
T TIGR00090        82 VHIFQPEAREFYDLEKLW   99 (99)
T ss_pred             EEeCChHHhhhcCHhhcC
Confidence            999999999999999999

This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.

>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells

Probab=100.00  E-value=2.6e-43  Score=238.13  Aligned_cols=99  Identities=36%  Similarity=0.664  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHH-HhcCCCcccccccCCCCEEEEEcCC
Q psy8849           6 RQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNI-KNINNNIVNIEGKKSSEWLLLDLGD   84 (112)
Q Consensus         6 l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~l-k~~~~~~~~~EG~~~~~WvllD~g~   84 (112)
                      .++.++++|+++||+||+++|+++.++++||||||||+|+||++|+|+++.+.+ |+.+..++++||.++++|+++|||+
T Consensus         1 ~~~~i~~~l~~~k~~dI~v~dv~~~~~~~dy~II~T~~S~rh~~aia~~v~~~~~k~~~~~~~~~eG~~~~~W~lvD~g~   80 (100)
T PF02410_consen    1 MLEEIVEALEDKKAEDIVVLDVREKSSWADYFIIATGRSERHVRAIADEVEKALKKEYGERPLRIEGLDESDWVLVDYGD   80 (100)
T ss_dssp             -HHHHHHHHHHTT-EEEEEEEGCTTBSS-SEEEEEEESSHHHHHHHHHHHHHHH-HHTT----EEESTTTTSEEEEEESS
T ss_pred             CHHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCEEEEcccE
Confidence            368999999999999999999999999999999999999999999999999999 6778889999999999999999999


Q ss_pred             EEEEeeChhhhhhcchhhhc
Q psy8849          85 IIIHIMNPYIRNMYNLEEIW  104 (112)
Q Consensus        85 vvVHif~~e~R~~Y~LE~LW  104 (112)
                      |+||||+||.|+|||||+||
T Consensus        81 ivVHif~~e~R~~Y~LE~LW  100 (100)
T PF02410_consen   81 IVVHIFTPEAREYYDLESLW  100 (100)
T ss_dssp             EEEEEEEHHHHHHHCHHHHT
T ss_pred             EEEEcCCHHHHhHcCHhhcC
Confidence            99999999999999999999

Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.

>KOG3212|consensus

Probab=99.98  E-value=5e-32  Score=200.32  Aligned_cols=102  Identities=32%  Similarity=0.547  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhc---CCCcccccccCCCCEEEEEc
Q psy8849           6 RQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNI---NNNIVNIEGKKSSEWLLLDL   82 (112)
Q Consensus         6 l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~---~~~~~~~EG~~~~~WvllD~   82 (112)
                      .++.++++|.+.+|.||+|+-+.+.+.|+||+|||||+|.||++|+|++|+..+|..   |-+..++||.++++|+++|+
T Consensus        70 ~ve~vv~lLrdenadDVfVi~vpeem~y~dh~VIcSgrs~rhl~aiAe~lv~m~Kik~~kgd~hvriegk~s~dW~v~D~  149 (208)
T KOG3212|consen   70 TVEEVVKLLRDENADDVFVIPVPEEMFYADHTVICSGRSDRHLRAIAEALVYMAKIKSQKGDKHVRIEGKQSSDWIVIDY  149 (208)
T ss_pred             hHHHHHHHHHhcccCceEEEeccccceeeeeEEEEecCchHHHHHHHHHHHHHHHHhhcCCCcccccccccCCCeEEEEe
Confidence            368899999999999999999999999999999999999999999999999998853   55678999999999999999


Q ss_pred             CCEEEEeeChhhhhhcchhhhcccc
Q psy8849          83 GDIIIHIMNPYIRNMYNLEEIWGEK  107 (112)
Q Consensus        83 g~vvVHif~~e~R~~Y~LE~LW~~~  107 (112)
                      |.++||+|+||+|++||||+||+..
T Consensus       150 g~~vvH~mseeaRe~YdLEsLWa~~  174 (208)
T KOG3212|consen  150 GKFVVHAMSEEAREYYDLESLWAAE  174 (208)
T ss_pred             ceEEEEecCHHHhhhccHHHHhccc
Confidence            9999999999999999999999873

>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional

Probab=85.35  E-value=10  Score=27.42  Aligned_cols=75  Identities=9%  Similarity=-0.039  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEecCCCCCcc--CEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCccccccc-CCCCEEE
Q psy8849           4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLF--DRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGK-KSSEWLL   79 (112)
Q Consensus         4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~--dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~-~~~~Wvl   79 (112)
                      +++.+...++.......++.+..--+.-...  -.+|.+++...+..-..++.+.+.+|.. .|..+.|=. +++.|+-
T Consensus        61 k~l~~I~~ea~~~~~~~~v~i~HR~G~l~~Ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~-vPIWKkE~~~dG~~Wv~  138 (150)
T PRK10678         61 KALAEIVDEARSRWPLGRVTVIHRVGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTR-APFWKREATPEGDRWVE  138 (150)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEeEecccCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhc-CCeEEeEEcCCCCEEec
Confidence            3444444455555667888888666544333  3556666666666777888999999874 455555422 2246874

>PRK05568 flavodoxin; Provisional

Probab=84.51  E-value=4.3  Score=27.60  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=38.5

Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcCCH------HHHHHHHHHHH
Q psy8849           2 NINKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGSSK------RQINALAVSIR   56 (112)
Q Consensus         2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~S~------rh~~aia~~v~   56 (112)
                      +++++++.|++.+.+.+ .++.++|+....    .-+|.+|++|..-.      ..+....+.+.
T Consensus        14 nT~~~a~~i~~~~~~~g-~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~   77 (142)
T PRK05568         14 NTEAMANLIAEGAKENG-AEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESIS   77 (142)
T ss_pred             hHHHHHHHHHHHHHHCC-CeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhh
Confidence            47889999999886544 589999998754    24699999998643      34555555443

>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]

Probab=81.03  E-value=18  Score=26.10  Aligned_cols=79  Identities=8%  Similarity=0.033  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEecCCCCCccC--EEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccc-cCCCCEEE
Q psy8849           3 INKRQIIVIKILKDIKAQDIKVYDTSNLTNLFD--RITIASGSSKRQINALAVSIRKNIKNINNNIVNIEG-KKSSEWLL   79 (112)
Q Consensus         3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~d--y~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG-~~~~~Wvl   79 (112)
                      .+++.+.+.++.+.-...++.++.-.+.-...|  ++|.++|...+-.-..++.+.+.+|.. .|..+.|= .++..|+-
T Consensus        60 ~k~l~~I~~e~~~k~~~~~v~i~HriG~l~~Ge~~v~v~v~s~HR~~Af~a~~~~id~lK~~-aPiWKkE~~~dg~~Wv~  138 (149)
T COG0314          60 EKELEEIAAEAKEKWGLLRVAIIHRIGELKIGEAIVLVGVASAHRKEAFEACEYIIDRLKHR-APIWKKEHTEDGERWVG  138 (149)
T ss_pred             HHHHHHHHHHHHHhCCceeEEEEEeeccccCCCcEEEEEEecccHHHHHHHHHHHHHHHHhh-CCceEEEecCCCCeEEe
Confidence            344555555555555678988887777544443  445555555555667788888888874 44444441 23345876


Q ss_pred             EEc
Q psy8849          80 LDL   82 (112)
Q Consensus        80 lD~   82 (112)
                      -+.
T Consensus       139 ~~~  141 (149)
T COG0314         139 DRE  141 (149)
T ss_pred             ccc
Confidence            544

>PRK09271 flavodoxin; Provisional

Probab=80.67  E-value=16  Score=25.69  Aligned_cols=73  Identities=11%  Similarity=0.202  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEecCCCC------C--ccCEEEEEEcC-----CHHHHHHHHHHHHHHHHhcCCCccc
Q psy8849           2 NINKRQIIVIKILKDIKAQDIKVYDTSNLT------N--LFDRITIASGS-----SKRQINALAVSIRKNIKNINNNIVN   68 (112)
Q Consensus         2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~------~--~~dy~VIaT~~-----S~rh~~aia~~v~~~lk~~~~~~~~   68 (112)
                      +++++++.|++.|...+. ++.+.++....      .  -+|.+||+|.+     -+..++...+.+.....+ + ++..
T Consensus        13 nTe~~A~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~-~-k~~a   89 (160)
T PRK09271         13 NTREVAREIEERCEEAGH-EVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGK-P-PNVA   89 (160)
T ss_pred             hHHHHHHHHHHHHHhCCC-eeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhcc-C-CeEE
Confidence            478899999999987554 67667664321      1  24889999942     344566666666543221 1 2233


Q ss_pred             ccccCCCCE
Q psy8849          69 IEGKKSSEW   77 (112)
Q Consensus        69 ~EG~~~~~W   77 (112)
                      +=|..+..|
T Consensus        90 vfgsgd~~~   98 (160)
T PRK09271         90 VFGTGETQW   98 (160)
T ss_pred             EEecCCCCc
Confidence            434444566

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
2id1_A	130	X-Ray Crystal Structure Of Protein Cv0518 From Chro		5e-12
3ups_A	136	Crystal Structure Of Iojap-Like Protein From Zymomo		6e-04

>pdb|2ID1|A Chain A, X-Ray Crystal Structure Of Protein Cv0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target Cvr5. Length = 130

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%)
Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXXXXX 68
           + I+ L+DIK +DI   DTS LT+LF R  +A+G S RQ+ ALA S++            
Sbjct: 9   LAIEALEDIKGKDIIELDTSKLTSLFQRXIVATGDSNRQVKALANSVQVKLKEAGVDIVG 68
Query: 69  XXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWGEKEIKF 111
                S EW              P +R+ Y++E +WG ++  F
Sbjct: 69  SEGHESGEWVLVDAGDVVVHVXLPAVRDYYDIEALWGGQKPSF 111

>pdb|3UPS|A Chain A, Crystal Structure Of Iojap-Like Protein From Zymomonas Mobilis Length = 136

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 38/97 (39%)
Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRXXXXXXXXXXXX 68
           +V   L D +A +I     +  +++ D   IASG S RQ+ A A  +             
Sbjct: 25  LVTDSLDDDQALEIATIPLAGKSSIADYXVIASGRSSRQVTAXAQKLADRIKAATGYVSK 84
Query: 69  XXXXXSSEWXXXXXXXXXXXXMNPYIRNMYNLEEIWG 105
                +++W              P +R+ YNLE  WG
Sbjct: 85  IEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERXWG 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
2id1_A	130	Hypothetical protein; alpha-beta protein, structur	2e-41
3ups_A	136	Iojap-like protein; PSI-biology, MCSG, midwest cen	9e-40
2o5a_A	125	BH1328 protein; BHR21, NESG, structural genomics,	1e-36

>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12 Length = 130

 Score =  131 bits (333), Expect = 2e-41
 Identities = 47/111 (42%), Positives = 75/111 (67%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M I +   + I+ L+DIK +DI   DTS LT+LF R+ +A+G S RQ+ ALA S++  +K
Sbjct: 1   MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
               +IV  EG +S EW+L+D GD+++H+M P +R+ Y++E +WG ++  F
Sbjct: 61  EAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPSF 111

>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp} Length = 136

 Score =  128 bits (323), Expect = 9e-40
 Identities = 38/108 (35%), Positives = 60/108 (55%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
            +      +V   L D +A +I     +  +++ D + IASG S RQ+ A+A  +   IK
Sbjct: 17  FDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIK 76

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKE 108
                +  IEG  +++W+LLD GDIIIH+  P +R+ YNLE +WG  +
Sbjct: 77  AATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGFGD 124

>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12 Length = 125

 Score =  119 bits (301), Expect = 1e-36
 Identities = 29/109 (26%), Positives = 61/109 (55%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M+  +   + +  + D KA+ +   +   ++ + D   I  G+S++Q+ A+A  ++K  +
Sbjct: 1   MSNQELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQ 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109
                I  +EG + + W+L+DLGD+++H+ +   R  YNLE++WG+   
Sbjct: 61  EQGIEIKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
2o5a_A	125	BH1328 protein; BHR21, NESG, structural genomics,	100.0
2id1_A	130	Hypothetical protein; alpha-beta protein, structur	100.0
3ups_A	136	Iojap-like protein; PSI-biology, MCSG, midwest cen	100.0
3fni_A	159	Putative diflavin flavoprotein A 3; alpha-beta pro	83.91

>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12

Probab=100.00  E-value=2e-49  Score=277.21  Aligned_cols=109  Identities=27%  Similarity=0.560  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849           1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL   80 (112)
Q Consensus         1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll   80 (112)
                      |+++++++.++++|+++||+||++|||++.+++|||||||||+|+||++|+|++|.+.+|+.|.+|+++||.++++|+|+
T Consensus         1 M~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLl   80 (125)
T 2o5a_A            1 MSNQELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLI   80 (125)
T ss_dssp             -CCHHHHHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCEEESTTTTSEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCccccccCCCCCCEEEE
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCEEEEeeChhhhhhcchhhhcccccc
Q psy8849          81 DLGDIIIHIMNPYIRNMYNLEEIWGEKEI  109 (112)
Q Consensus        81 D~g~vvVHif~~e~R~~Y~LE~LW~~~~~  109 (112)
                      ||||||||||+||.|+|||||+||+++|.
T Consensus        81 D~GdVvVHif~~e~RefY~LE~LW~da~~  109 (125)
T 2o5a_A           81 DLGDVVVHVFHKDERAYYNLEKLWGDAPT  109 (125)
T ss_dssp             ECSSEEEEEEETTCGGGTSTTTCC---CB
T ss_pred             eCCCEEEEeCCHHHHhHcCHHHHhCCCCc
Confidence            99999999999999999999999999975

>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12

Probab=100.00  E-value=9.1e-49  Score=275.39  Aligned_cols=110  Identities=43%  Similarity=0.777  Sum_probs=107.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849           1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL   80 (112)
Q Consensus         1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll   80 (112)
                      |+++++++.++++|+++||+||++|||++.++++||||||||+|+||++|+|++|.+.+|+.|..|+++||.++++|+|+
T Consensus         1 m~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLl   80 (130)
T 2id1_A            1 MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHESGEWVLV   80 (130)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCBCCSTTTSSEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCcCccccCCCCCCEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCEEEEeeChhhhhhcchhhhc-cccccc
Q psy8849          81 DLGDIIIHIMNPYIRNMYNLEEIW-GEKEIK  110 (112)
Q Consensus        81 D~g~vvVHif~~e~R~~Y~LE~LW-~~~~~~  110 (112)
                      ||||||||||+||.|+|||||+|| +++|..
T Consensus        81 D~GdVvVHIf~~e~RefY~LE~LW~~da~~~  111 (130)
T 2id1_A           81 DAGDVVVHVMLPAVRDYYDIEALWGGQKPSF  111 (130)
T ss_dssp             EETTEEEEEECHHHHHHHCHHHHTTCCCCCC
T ss_pred             ecCCEEEEcCCHHHHhHcCHHHHhcCCCccc
Confidence            999999999999999999999999 898753

>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}

Probab=100.00  E-value=2.2e-48  Score=275.24  Aligned_cols=109  Identities=35%  Similarity=0.597  Sum_probs=105.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849           1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL   80 (112)
Q Consensus         1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll   80 (112)
                      |+++++++.|+++|+++||+||++|||++.++++||||||||+|.||++|+|++|.+.+|+.|..++++||.++++|+|+
T Consensus        17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLl   96 (136)
T 3ups_A           17 FDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAATGYVSKIEGLPAADWVLL   96 (136)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEEEEECTTTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHHHCCCCEEESCSSCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCccCcccCCCCCCEEEE
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCEEEEeeChhhhhhcchhhhcccccc
Q psy8849          81 DLGDIIIHIMNPYIRNMYNLEEIWGEKEI  109 (112)
Q Consensus        81 D~g~vvVHif~~e~R~~Y~LE~LW~~~~~  109 (112)
                      ||||||||||+||.|+|||||+||+++|.
T Consensus        97 D~GdVvVHIf~~e~RefY~LE~LW~d~~~  125 (136)
T 3ups_A           97 DAGDIIIHLFRPEVRSFYNLERMWGFGDE  125 (136)
T ss_dssp             ECSSEEEEEECHHHHHHHHHHHHTTTTC-
T ss_pred             eCCCEEEEeCCHHHHHHcCHHHHhCcCCc
Confidence            99999999999999999999999999975

>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A

Probab=83.91  E-value=3.6  Score=27.89  Aligned_cols=47  Identities=9%  Similarity=0.063  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEecCCC-CC--------ccCEEEEEEcCCHHHHH
Q psy8849           2 NINKRQIIVIKILKDIKAQDIKVYDTSNL-TN--------LFDRITIASGSSKRQIN   49 (112)
Q Consensus         2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~-~~--------~~dy~VIaT~~S~rh~~   49 (112)
                      +++++++.|++.|.+.+ .++.++|++.. ..        -+|.+||+|..-.-.+.
T Consensus        17 nT~~iA~~ia~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~p   72 (159)
T 3fni_A           17 YSDRLAQAIINGITKTG-VGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASAAS   72 (159)
T ss_dssp             THHHHHHHHHHHHHHTT-CEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSHHH
T ss_pred             HHHHHHHHHHHHHHHCC-CeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCCcc
Confidence            47899999999998865 47999999875 31        16889999876543333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d2id1a1	120	d.218.1.12 (A:1-120) Hypothetical protein CV0518 {	2e-29
d2o5aa1	113	d.218.1.12 (A:2-114) Uncharacterized protein BH132	1e-26

>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Hypothetical protein CV0518
species: Chromobacterium violaceum [TaxId: 536]

 Score =  100 bits (250), Expect = 2e-29
 Identities = 47/111 (42%), Positives = 75/111 (67%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M I +   + I+ L+DIK +DI   DTS LT+LF R+ +A+G S RQ+ ALA S++  +K
Sbjct: 1   MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
               +IV  EG +S EW+L+D GD+++H+M P +R+ Y++E +WG ++  F
Sbjct: 61  EAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPSF 111

>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Uncharacterized protein BH1328
species: Bacillus halodurans [TaxId: 86665]

 Score = 93.0 bits (231), Expect = 1e-26
 Identities = 28/101 (27%), Positives = 58/101 (57%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
           + +  + D KA+ +   +   ++ + D   I  G+S++Q+ A+A  ++K  +     I  
Sbjct: 8   LAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKR 67

Query: 69  IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109
           +EG + + W+L+DLGD+++H+ +   R  YNLE++WG+   
Sbjct: 68  LEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d2o5aa1	113	Uncharacterized protein BH1328 {Bacillus haloduran	100.0
d2id1a1	120	Hypothetical protein CV0518 {Chromobacterium viola	100.0

>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Uncharacterized protein BH1328
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=5.6e-48  Score=264.12  Aligned_cols=108  Identities=26%  Similarity=0.552  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEEE
Q psy8849           2 NINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLD   81 (112)
Q Consensus         2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~WvllD   81 (112)
                      +++++++.++++|+++||+||++||+++.++++||||||||+|.||++|+|+.|.+.+|+.|.+++++||.++++|+|+|
T Consensus         1 s~~el~~~i~~~l~dkKa~dI~vldv~~~~~~~D~~VIatg~S~rh~~aia~~v~~~~k~~~~~~~~~eG~~~~~WvliD   80 (113)
T d2o5aa1           1 SNQELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLID   80 (113)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCEEESTTTTSEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHHHhccccccccCCCCCCEEEee
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEeeChhhhhhcchhhhcccccc
Q psy8849          82 LGDIIIHIMNPYIRNMYNLEEIWGEKEI  109 (112)
Q Consensus        82 ~g~vvVHif~~e~R~~Y~LE~LW~~~~~  109 (112)
                      ||+||||||+||.|+||+||+||+++|.
T Consensus        81 ~gdvvVHif~~e~Re~Y~LE~LW~da~~  108 (113)
T d2o5aa1          81 LGDVVVHVFHKDERAYYNLEKLWGDAPT  108 (113)
T ss_dssp             CSSEEEEEEETTCGGGTSTTTCC---CB
T ss_pred             CCCEEEEcCCHHHHhHcCHHHHhCcCCc
Confidence            9999999999999999999999999985

>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Hypothetical protein CV0518
species: Chromobacterium violaceum [TaxId: 536]

Probab=100.00  E-value=2.4e-47  Score=263.28  Aligned_cols=109  Identities=42%  Similarity=0.784  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849           1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL   80 (112)
Q Consensus         1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll   80 (112)
                      |+++++++.|+++|+++||+||+++|+++.++++||||||||+|.||++|++++|.+.+|+.|.+++++||.++++|+|+
T Consensus         1 m~~~~l~~~i~~~l~d~Ka~DI~vldv~~~~~~~D~~VI~Tg~S~rh~~aia~~i~~~lk~~~~~~~~~eG~~~~~Will   80 (120)
T d2id1a1           1 MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHESGEWVLV   80 (120)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCBCCSTTTSSEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCccccEEEEEEecCHHHHHHHHHHHHHHHHHcCCccccccCCCCCCEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCEEEEeeChhhhhhcchhhhcccccc
Q psy8849          81 DLGDIIIHIMNPYIRNMYNLEEIWGEKEI  109 (112)
Q Consensus        81 D~g~vvVHif~~e~R~~Y~LE~LW~~~~~  109 (112)
                      |||+||||||+||.|+||+||+||+++++
T Consensus        81 D~gdivVHif~~e~R~~Y~LE~LW~d~~p  109 (120)
T d2id1a1          81 DAGDVVVHVMLPAVRDYYDIEALWGGQKP  109 (120)
T ss_dssp             EETTEEEEEECHHHHHHHCHHHHTTCCCC
T ss_pred             ecCceEEEeCCHHHHHHcCHHHHhCCCCC
Confidence            99999999999999999999999999854